BLASTP 2.2.10 [Oct-19-2004]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

RID: 1111079854-30366-210763114855.BLASTQ2

Query= hg16_dna_2|geneid_v1.2_predicted_protein_2|282_AA
         (281 letters)


Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples 
           2,367,365 sequences; 802,797,248 total letters

 
If you have any problems or questions with the results of this search 
please refer to the BLAST FAQs

Taxonomy reports

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|12052951|emb|CAB66650.1|  hypothetical protein [Homo sapi...   426   e-119 
gi|38014067|gb|AAH13292.2|  NT5C3 protein [Homo sapiens]          422   e-118 
gi|47940472|gb|AAH71652.1|  NT5C3 protein [Homo sapiens]          422   e-118 
gi|44890746|gb|AAH66914.1|  NT5C3 protein [Homo sapiens]          389   e-108 
gi|16198395|gb|AAH15856.1|  5'-nucleotidase, cytosolic III [...   387   e-107 
gi|51105879|gb|EAL24463.1|  5'-nucleotidase, cytosolic III [...   385   e-107 
gi|54035066|gb|AAH13742.2|  Hypothetical protein MGC20781 [H...   230   3e-60 
gi|1911526|gb|AAB50705.1|  p36=interferon-alpha-induced prot...    39   0.014 
gi|1911525|gb|AAB50704.1|  p36=interferon-alpha-induced prot...    38   0.019 
gi|1911524|gb|AAB50703.1|  p36=interferon-alpha-induced prot...    35   0.12  
gi|1911523|gb|AAB50702.1|  p36=interferon-alpha-induced prot...    34   0.36  
gi|55665464|emb|CAH73671.1|  microtubule-actin crosslinking ...    31   3.0   
gi|55665463|emb|CAH73669.1|  microtubule-actin crosslinking ...    31   3.0   
gi|55665462|emb|CAH73668.1|  microtubule-actin crosslinking ...    31   3.0   
gi|15824727|gb|AAL09459.1|  macrophin 1 isoform 4 [Homo sapi...    31   3.0   
gi|17426164|gb|AAL39000.1|  macrophin 1 isoform 2 [Homo sapi...    31   3.0   
gi|17426161|gb|AAL38997.1|  macrophin 1 isoform 4 [Homo sapi...    31   3.0   
gi|6273778|gb|AAF06360.1|  trabeculin-alpha [Homo sapiens]         31   3.0   
gi|5821434|dbj|BAA83821.1|  actin binding protein ABP620 [Ho...    31   3.0   


Alignments

>gi|12052951|emb|CAB66650.1|   hypothetical protein [Homo sapiens]
 gi|49065462|emb|CAG38549.1|   NT5C3 [Homo sapiens]
          Length = 336

 Score =  426 bits (1096), Expect = e-119
 Identities = 229/336 (68%), Positives = 239/336 (71%), Gaps = 55/336 (16%)

Query: 1   MRARSMDXXXXXXXXXXXXXXXXXXXXXXXXXQYIFTLKRKTGRKTKIIEMMPEFQKSSV 60
           MRA SMD                         QYIFTLKRKTGRKTKIIEMMPEFQKSSV
Sbjct: 1   MRAPSMDRAAVARVGAVASASVCALVAGVVLAQYIFTLKRKTGRKTKIIEMMPEFQKSSV 60

Query: 61  RIKNLTRVEEMICGLIKGGAAKLQIITDFDMTLSRFSYKGKRCPTCHNSIDNCQLITDEC 120
           RIKN TRVEE+ICGLIKGGAAKLQIITDFDMTLSRFSYKGKRCPTCHN IDNC+L+TDEC
Sbjct: 61  RIKNPTRVEEIICGLIKGGAAKLQIITDFDMTLSRFSYKGKRCPTCHNIIDNCKLVTDEC 120

Query: 121 RXXXXXXXXXYYAIEVDPVLTVEEKYPYMVECDV---------------LEEVIRQA--- 162
           R         YYAIEVDPVLTVEEKYPYMVE                  L+E++ ++   
Sbjct: 121 RKKLLQLKEKYYAIEVDPVLTVEEKYPYMVEWYTKSHGLLVQQALPKAKLKEIVAESDVM 180

Query: 163 -------------------------------------GVYHPNVKVVSNFMDFDETGVLK 185
                                                GVYHPNVKVVSNFMDFDETGVLK
Sbjct: 181 LKEGYENFFDKLQQHSIPVFIFSAGIGDVLEEVIRQAGVYHPNVKVVSNFMDFDETGVLK 240

Query: 186 GFKGVLIHIFNKHDGALRNTEYFNQLKDNSNIILLGDSQGDLRMADGVANVEHILKVGYL 245
           GFKG LIH+FNKHDGALRNTEYFNQLKDNSNIILLGDSQGDLRMADGVANVEHILK+GYL
Sbjct: 241 GFKGELIHVFNKHDGALRNTEYFNQLKDNSNIILLGDSQGDLRMADGVANVEHILKIGYL 300

Query: 246 NDRVDELLEKYMDSYDIVLVQDESLEVANSILQKIL 281
           NDRVDELLEKYMDSYDIVLVQDESLEVANSILQKIL
Sbjct: 301 NDRVDELLEKYMDSYDIVLVQDESLEVANSILQKIL 336



>gi|38014067|gb|AAH13292.2|   NT5C3 protein [Homo sapiens]
          Length = 322

 Score =  422 bits (1084), Expect = e-118
 Identities = 223/304 (73%), Positives = 233/304 (76%), Gaps = 55/304 (18%)

Query: 33  QYIFTLKRKTGRKTKIIEMMPEFQKSSVRIKNLTRVEEMICGLIKGGAAKLQIITDFDMT 92
           QYIFTLKRKTGRKTKIIEMMPEFQKSSVRIKN TRVEE+ICGLIKGGAAKLQIITDFDMT
Sbjct: 19  QYIFTLKRKTGRKTKIIEMMPEFQKSSVRIKNPTRVEEIICGLIKGGAAKLQIITDFDMT 78

Query: 93  LSRFSYKGKRCPTCHNSIDNCQLITDECRXXXXXXXXXYYAIEVDPVLTVEEKYPYMVEC 152
           LSRFSYKGKRCPTCHN IDNC+L+TDECR         YYAIEVDPVLTVEEKYPYMVE 
Sbjct: 79  LSRFSYKGKRCPTCHNIIDNCKLVTDECRKKLLQLKEKYYAIEVDPVLTVEEKYPYMVEW 138

Query: 153 DV---------------LEEVIRQA----------------------------------- 162
                            L+E++ ++                                   
Sbjct: 139 YTKSHGLLVQQALPKAKLKEIVAESDVMLKEGYENFFDKLQQHSIPVFIFSAGIGDVLEE 198

Query: 163 -----GVYHPNVKVVSNFMDFDETGVLKGFKGVLIHIFNKHDGALRNTEYFNQLKDNSNI 217
                GVYHPNVKVVSNFMDFDETGVLKGFKG LIH+FNKHDGALRNTEYFNQLKDNSNI
Sbjct: 199 VIRQAGVYHPNVKVVSNFMDFDETGVLKGFKGELIHVFNKHDGALRNTEYFNQLKDNSNI 258

Query: 218 ILLGDSQGDLRMADGVANVEHILKVGYLNDRVDELLEKYMDSYDIVLVQDESLEVANSIL 277
           ILLGDSQGDLRMADGVANVEHILK+GYLNDRVDELLEKYMDSYDIVLVQDESLEVANSIL
Sbjct: 259 ILLGDSQGDLRMADGVANVEHILKIGYLNDRVDELLEKYMDSYDIVLVQDESLEVANSIL 318

Query: 278 QKIL 281
           QKIL
Sbjct: 319 QKIL 322



>gi|47940472|gb|AAH71652.1|   NT5C3 protein [Homo sapiens]
          Length = 331

 Score =  422 bits (1084), Expect = e-118
 Identities = 223/304 (73%), Positives = 233/304 (76%), Gaps = 55/304 (18%)

Query: 33  QYIFTLKRKTGRKTKIIEMMPEFQKSSVRIKNLTRVEEMICGLIKGGAAKLQIITDFDMT 92
           QYIFTLKRKTGRKTKIIEMMPEFQKSSVRIKN TRVEE+ICGLIKGGAAKLQIITDFDMT
Sbjct: 28  QYIFTLKRKTGRKTKIIEMMPEFQKSSVRIKNPTRVEEIICGLIKGGAAKLQIITDFDMT 87

Query: 93  LSRFSYKGKRCPTCHNSIDNCQLITDECRXXXXXXXXXYYAIEVDPVLTVEEKYPYMVEC 152
           LSRFSYKGKRCPTCHN IDNC+L+TDECR         YYAIEVDPVLTVEEKYPYMVE 
Sbjct: 88  LSRFSYKGKRCPTCHNIIDNCKLVTDECRKKLLQLKEKYYAIEVDPVLTVEEKYPYMVEW 147

Query: 153 DV---------------LEEVIRQA----------------------------------- 162
                            L+E++ ++                                   
Sbjct: 148 YTKSHGLLVQQALPKAKLKEIVAESDVMLKEGYENFFDKLQQHSIPVFIFSAGIGDVLEE 207

Query: 163 -----GVYHPNVKVVSNFMDFDETGVLKGFKGVLIHIFNKHDGALRNTEYFNQLKDNSNI 217
                GVYHPNVKVVSNFMDFDETGVLKGFKG LIH+FNKHDGALRNTEYFNQLKDNSNI
Sbjct: 208 VIRQAGVYHPNVKVVSNFMDFDETGVLKGFKGELIHVFNKHDGALRNTEYFNQLKDNSNI 267

Query: 218 ILLGDSQGDLRMADGVANVEHILKVGYLNDRVDELLEKYMDSYDIVLVQDESLEVANSIL 277
           ILLGDSQGDLRMADGVANVEHILK+GYLNDRVDELLEKYMDSYDIVLVQDESLEVANSIL
Sbjct: 268 ILLGDSQGDLRMADGVANVEHILKIGYLNDRVDELLEKYMDSYDIVLVQDESLEVANSIL 327

Query: 278 QKIL 281
           QKIL
Sbjct: 328 QKIL 331



>gi|44890746|gb|AAH66914.1|   NT5C3 protein [Homo sapiens]
          Length = 297

 Score =  389 bits (998), Expect = e-108
 Identities = 205/288 (71%), Positives = 217/288 (75%), Gaps = 55/288 (19%)

Query: 49  IEMMPEFQKSSVRIKNLTRVEEMICGLIKGGAAKLQIITDFDMTLSRFSYKGKRCPTCHN 108
           ++MMPEFQKSSVRIKN TRVEE+ICGLIKGGAAKLQIITDFDMTLSRFSYKGKRCPTCHN
Sbjct: 10  VKMMPEFQKSSVRIKNPTRVEEIICGLIKGGAAKLQIITDFDMTLSRFSYKGKRCPTCHN 69

Query: 109 SIDNCQLITDECRXXXXXXXXXYYAIEVDPVLTVEEKYPYMVECDV-------------- 154
            IDNC+L+TDECR         YYAIEVDPVLTVEEKYPYMVE                 
Sbjct: 70  IIDNCKLVTDECRKKLLQLKEKYYAIEVDPVLTVEEKYPYMVEWYTKSHGLLVQQALPKA 129

Query: 155 -LEEVIRQA----------------------------------------GVYHPNVKVVS 173
            L+E++ ++                                        GVYHPNVKVVS
Sbjct: 130 KLKEIVAESDVMLKEGYENFFDKLQQHSIPVFIFSAGIGDVLEEVIRQAGVYHPNVKVVS 189

Query: 174 NFMDFDETGVLKGFKGVLIHIFNKHDGALRNTEYFNQLKDNSNIILLGDSQGDLRMADGV 233
           NFMDFDETGVLKGFKG LIH+FNKHDGALRNTEYFNQLKDNSNIILLGDSQGDLRMADGV
Sbjct: 190 NFMDFDETGVLKGFKGELIHVFNKHDGALRNTEYFNQLKDNSNIILLGDSQGDLRMADGV 249

Query: 234 ANVEHILKVGYLNDRVDELLEKYMDSYDIVLVQDESLEVANSILQKIL 281
           ANVEHILK+GYLNDRVDELLEKYMDSYDIVLVQDESLEVANSILQKIL
Sbjct: 250 ANVEHILKIGYLNDRVDELLEKYMDSYDIVLVQDESLEVANSILQKIL 297



>gi|16198395|gb|AAH15856.1|   5'-nucleotidase, cytosolic III [Homo sapiens]
 gi|7106856|gb|AAF36153.1|   HSPC233 [Homo sapiens]
 gi|11245474|gb|AAG33630.1|   pyrimidine 5'-nucleotidase [Homo sapiens]
 gi|7706031|ref|NP_057573.1|   5'-nucleotidase, cytosolic III; uridine 5' monophosphate hydrolase
           1; pyrimidine 5'-nucleotidase [Homo sapiens]
          Length = 286

 Score =  387 bits (994), Expect = e-107
 Identities = 205/286 (71%), Positives = 215/286 (75%), Gaps = 55/286 (19%)

Query: 51  MMPEFQKSSVRIKNLTRVEEMICGLIKGGAAKLQIITDFDMTLSRFSYKGKRCPTCHNSI 110
           MMPEFQKSSVRIKN TRVEE+ICGLIKGGAAKLQIITDFDMTLSRFSYKGKRCPTCHN I
Sbjct: 1   MMPEFQKSSVRIKNPTRVEEIICGLIKGGAAKLQIITDFDMTLSRFSYKGKRCPTCHNII 60

Query: 111 DNCQLITDECRXXXXXXXXXYYAIEVDPVLTVEEKYPYMVECDV---------------L 155
           DNC+L+TDECR         YYAIEVDPVLTVEEKYPYMVE                  L
Sbjct: 61  DNCKLVTDECRKKLLQLKEKYYAIEVDPVLTVEEKYPYMVEWYTKSHGLLVQQALPKAKL 120

Query: 156 EEVIRQA----------------------------------------GVYHPNVKVVSNF 175
           +E++ ++                                        GVYHPNVKVVSNF
Sbjct: 121 KEIVAESDVMLKEGYENFFDKLQQHSIPVFIFSAGIGDVLEEVIRQAGVYHPNVKVVSNF 180

Query: 176 MDFDETGVLKGFKGVLIHIFNKHDGALRNTEYFNQLKDNSNIILLGDSQGDLRMADGVAN 235
           MDFDETGVLKGFKG LIH+FNKHDGALRNTEYFNQLKDNSNIILLGDSQGDLRMADGVAN
Sbjct: 181 MDFDETGVLKGFKGELIHVFNKHDGALRNTEYFNQLKDNSNIILLGDSQGDLRMADGVAN 240

Query: 236 VEHILKVGYLNDRVDELLEKYMDSYDIVLVQDESLEVANSILQKIL 281
           VEHILK+GYLNDRVDELLEKYMDSYDIVLVQDESLEVANSILQKIL
Sbjct: 241 VEHILKIGYLNDRVDELLEKYMDSYDIVLVQDESLEVANSILQKIL 286



>gi|51105879|gb|EAL24463.1|   5'-nucleotidase, cytosolic III [Homo sapiens]
          Length = 285

 Score =  385 bits (989), Expect = e-107
 Identities = 204/285 (71%), Positives = 214/285 (75%), Gaps = 55/285 (19%)

Query: 52  MPEFQKSSVRIKNLTRVEEMICGLIKGGAAKLQIITDFDMTLSRFSYKGKRCPTCHNSID 111
           MPEFQKSSVRIKN TRVEE+ICGLIKGGAAKLQIITDFDMTLSRFSYKGKRCPTCHN ID
Sbjct: 1   MPEFQKSSVRIKNPTRVEEIICGLIKGGAAKLQIITDFDMTLSRFSYKGKRCPTCHNIID 60

Query: 112 NCQLITDECRXXXXXXXXXYYAIEVDPVLTVEEKYPYMVECDV---------------LE 156
           NC+L+TDECR         YYAIEVDPVLTVEEKYPYMVE                  L+
Sbjct: 61  NCKLVTDECRKKLLQLKEKYYAIEVDPVLTVEEKYPYMVEWYTKSHGLLVQQALPKAKLK 120

Query: 157 EVIRQA----------------------------------------GVYHPNVKVVSNFM 176
           E++ ++                                        GVYHPNVKVVSNFM
Sbjct: 121 EIVAESDVMLKEGYENFFDKLQQHSIPVFIFSAGIGDVLEEVIRQAGVYHPNVKVVSNFM 180

Query: 177 DFDETGVLKGFKGVLIHIFNKHDGALRNTEYFNQLKDNSNIILLGDSQGDLRMADGVANV 236
           DFDETGVLKGFKG LIH+FNKHDGALRNTEYFNQLKDNSNIILLGDSQGDLRMADGVANV
Sbjct: 181 DFDETGVLKGFKGELIHVFNKHDGALRNTEYFNQLKDNSNIILLGDSQGDLRMADGVANV 240

Query: 237 EHILKVGYLNDRVDELLEKYMDSYDIVLVQDESLEVANSILQKIL 281
           EHILK+GYLNDRVDELLEKYMDSYDIVLVQDESLEVANSILQKIL
Sbjct: 241 EHILKIGYLNDRVDELLEKYMDSYDIVLVQDESLEVANSILQKIL 285



>gi|54035066|gb|AAH13742.2|   Hypothetical protein MGC20781 [Homo sapiens]
 gi|54035055|gb|AAH16971.2|   Hypothetical protein MGC20781 [Homo sapiens]
 gi|34147472|ref|NP_443167.2|   hypothetical protein MGC20781 [Homo sapiens]
 gi|45709994|gb|AAH67788.1|   Hypothetical protein MGC20781 [Homo sapiens]
 gi|33874205|gb|AAH14132.2|   Hypothetical protein MGC20781 [Homo sapiens]
          Length = 292

 Score =  230 bits (586), Expect = 3e-60
 Identities = 122/280 (43%), Positives = 170/280 (60%), Gaps = 55/280 (19%)

Query: 57  KSSVRIKNLTRVEEMICGLIKGGAAKLQIITDFDMTLSRFSYKGKRCPTCHNSIDNCQLI 116
           K++V ++   RV+E++  L KGG  +LQ+I+DFDMTLSRF+Y GKRCP+ +N +DN ++I
Sbjct: 2   KATVLMRQPGRVQEIVGALRKGGGDRLQVISDFDMTLSRFAYNGKRCPSSYNILDNSKII 61

Query: 117 TDECRXXXXXXXXXYYAIEVDPVLTVEEKYPYMVE---------CD------VLEEVIRQ 161
           ++ECR         YY IE+DP  TV+EK P+MVE         C        + +V+R+
Sbjct: 62  SEECRKELTALLHHYYPIEIDPHRTVKEKLPHMVEWWTKAHNLLCQQKIQKFQIAQVVRE 121

Query: 162 AG----------------------------------------VYHPNVKVVSNFMDFDET 181
           +                                         V+HPN+ +VSN+MDF+E 
Sbjct: 122 SNAMLREGYKTFFNTLYHNNIPLFIFSAGIGDILEEIIRQMKVFHPNIHIVSNYMDFNED 181

Query: 182 GVLKGFKGVLIHIFNKHDGALRNTEYFNQLKDNSNIILLGDSQGDLRMADGVANVEHILK 241
           G L+GFKG LIH +NK+     N  YF QL+  +N+ILLGDS GDL MADGV  V++ILK
Sbjct: 182 GFLQGFKGQLIHTYNKNSSVCENCGYFQQLEGKTNVILLGDSIGDLTMADGVPGVQNILK 241

Query: 242 VGYLNDRVDELLEKYMDSYDIVLVQDESLEVANSILQKIL 281
           +G+LND+V+E  E+YMDSYDIVL +DE+L+V N +LQ IL
Sbjct: 242 IGFLNDKVEERRERYMDSYDIVLEKDETLDVVNGLLQHIL 281



>gi|1911526|gb|AAB50705.1|   p36=interferon-alpha-induced protein associated with lupus
           inclusions {trypsin fragment T50(1/2)} [human, B
           lymphoblastoid cell line Raji, Peptide Partial, 19 aa]
          Length = 19

 Score = 38.5 bits (88), Expect = 0.014
 Identities = 18/18 (100%), Positives = 18/18 (100%)

Query: 256 YMDSYDIVLVQDESLEVA 273
           YMDSYDIVLVQDESLEVA
Sbjct: 1   YMDSYDIVLVQDESLEVA 18



>gi|1911525|gb|AAB50704.1|   p36=interferon-alpha-induced protein associated with lupus
           inclusions {trypsin fragment T48} [human, B
           lymphoblastoid cell line Raji, Peptide Partial, 17 aa]
          Length = 17

 Score = 38.1 bits (87), Expect = 0.019
 Identities = 16/17 (94%), Positives = 17/17 (100%)

Query: 131 YYAIEVDPVLTVEEKYP 147
           YYAIEVDPVLTVE+KYP
Sbjct: 1   YYAIEVDPVLTVEQKYP 17



>gi|1911524|gb|AAB50703.1|   p36=interferon-alpha-induced protein associated with lupus
           inclusions {trypsin fragment T29} [human, B
           lymphoblastoid cell line Raji, Peptide Partial, 16 aa]
          Length = 16

 Score = 35.4 bits (80), Expect = 0.12
 Identities = 16/16 (100%), Positives = 16/16 (100%)

Query: 213 DNSNIILLGDSQGDLR 228
           DNSNIILLGDSQGDLR
Sbjct: 1   DNSNIILLGDSQGDLR 16



>gi|1911523|gb|AAB50702.1|   p36=interferon-alpha-induced protein associated with lupus
           inclusions {trypsin fragment T37.8} [human, B
           lymphoblastoid cell line Raji, Peptide Partial, 15 aa]
          Length = 15

 Score = 33.9 bits (76), Expect = 0.36
 Identities = 15/15 (100%), Positives = 15/15 (100%)

Query: 171 VVSNFMDFDETGVLK 185
           VVSNFMDFDETGVLK
Sbjct: 1   VVSNFMDFDETGVLK 15



>gi|55665464|emb|CAH73671.1|   microtubule-actin crosslinking factor 1 [Homo sapiens]
 gi|55959647|emb|CAI16422.1|   microtubule-actin crosslinking factor 1 [Homo sapiens]
 gi|56204531|emb|CAI21816.1|   microtubule-actin crosslinking factor 1 [Homo sapiens]
 gi|33188443|ref|NP_149033.2|   microfilament and actin filament cross-linker protein isoform b [Homo
            sapiens]
          Length = 5938

 Score = 30.8 bits (68), Expect = 3.0
 Identities = 19/87 (21%), Positives = 38/87 (43%)

Query: 184  LKGFKGVLIHIFNKHDGALRNTEYFNQLKDNSNIILLGDSQGDLRMADGVANVEHILKVG 243
            L+G + +     N+   AL +T+ F Q+ D     L        +     A +E +    
Sbjct: 3214 LQGLEDLAADRINRLQAALASTQQFQQMFDELRTWLDDKQSQQAKNCPISAKLERLQSQL 3273

Query: 244  YLNDRVDELLEKYMDSYDIVLVQDESL 270
              N+   + L ++  SY++++ + ESL
Sbjct: 3274 QENEEFQKSLNQHSGSYEVIVAEGESL 3300



>gi|55665463|emb|CAH73669.1|   microtubule-actin crosslinking factor 1 [Homo sapiens]
 gi|55959646|emb|CAI16420.1|   microtubule-actin crosslinking factor 1 [Homo sapiens]
 gi|56204530|emb|CAI21815.1|   microtubule-actin crosslinking factor 1 [Homo sapiens]
 gi|34328014|dbj|BAA32310.3|   KIAA0465 protein [Homo sapiens]
          Length = 4433

 Score = 30.8 bits (68), Expect = 3.0
 Identities = 19/87 (21%), Positives = 38/87 (43%)

Query: 184  LKGFKGVLIHIFNKHDGALRNTEYFNQLKDNSNIILLGDSQGDLRMADGVANVEHILKVG 243
            L+G + +     N+   AL +T+ F Q+ D     L        +     A +E +    
Sbjct: 1824 LQGLEDLAADRINRLQAALASTQQFQQMFDELRTWLDDKQSQQAKNCPISAKLERLQSQL 1883

Query: 244  YLNDRVDELLEKYMDSYDIVLVQDESL 270
              N+   + L ++  SY++++ + ESL
Sbjct: 1884 QENEEFQKSLNQHSGSYEVIVAEGESL 1910



>gi|55665462|emb|CAH73668.1|   microtubule-actin crosslinking factor 1 [Homo sapiens]
 gi|55959644|emb|CAI16417.1|   microtubule-actin crosslinking factor 1 [Homo sapiens]
 gi|56204529|emb|CAI21814.1|   microtubule-actin crosslinking factor 1 [Homo sapiens]
 gi|55662923|emb|CAH70156.1|   microtubule-actin crosslinking factor 1 [Homo sapiens]
 gi|33188445|ref|NP_036222.3|   microfilament and actin filament cross-linker protein isoform a [Homo
            sapiens]
 gi|56405387|sp|Q9UPN3|MACF1_HUMAN   Microtubule-actin crosslinking factor 1, isoforms 1/2/3/5 (Actin
            cross-linking family protein 7) (Macrophin 1)
            (Trabeculin-alpha) (620 kDa actin-binding protein)
            (ABP620)
          Length = 5430

 Score = 30.8 bits (68), Expect = 3.0
 Identities = 19/87 (21%), Positives = 38/87 (43%)

Query: 184  LKGFKGVLIHIFNKHDGALRNTEYFNQLKDNSNIILLGDSQGDLRMADGVANVEHILKVG 243
            L+G + +     N+   AL +T+ F Q+ D     L        +     A +E +    
Sbjct: 2712 LQGLEDLAADRINRLQAALASTQQFQQMFDELRTWLDDKQSQQAKNCPISAKLERLQSQL 2771

Query: 244  YLNDRVDELLEKYMDSYDIVLVQDESL 270
              N+   + L ++  SY++++ + ESL
Sbjct: 2772 QENEEFQKSLNQHSGSYEVIVAEGESL 2798



>gi|15824727|gb|AAL09459.1|   macrophin 1 isoform 4 [Homo sapiens]
 gi|30316105|sp|Q96PK2|MAC4_HUMAN   Microtubule-actin crosslinking factor 1, isoform 4
          Length = 5938

 Score = 30.8 bits (68), Expect = 3.0
 Identities = 19/87 (21%), Positives = 38/87 (43%)

Query: 184  LKGFKGVLIHIFNKHDGALRNTEYFNQLKDNSNIILLGDSQGDLRMADGVANVEHILKVG 243
            L+G + +     N+   AL +T+ F Q+ D     L        +     A +E +    
Sbjct: 3214 LQGLEDLAADRINRLQAALASTQQFQQMFDELRTWLDDKQSQQAKNCPISAKLERLQSQL 3273

Query: 244  YLNDRVDELLEKYMDSYDIVLVQDESL 270
              N+   + L ++  SY++++ + ESL
Sbjct: 3274 QENEEFQKSLNQHSGSYEVIVAEGESL 3300



>gi|17426164|gb|AAL39000.1|   macrophin 1 isoform 2 [Homo sapiens]
          Length = 4631

 Score = 30.8 bits (68), Expect = 3.0
 Identities = 19/87 (21%), Positives = 38/87 (43%)

Query: 184  LKGFKGVLIHIFNKHDGALRNTEYFNQLKDNSNIILLGDSQGDLRMADGVANVEHILKVG 243
            L+G + +     N+   AL +T+ F Q+ D     L        +     A +E +    
Sbjct: 2531 LQGLEDLAADRINRLQAALASTQQFQQMFDELRTWLDDKQSQQAKNCPISAKLERLQSQL 2590

Query: 244  YLNDRVDELLEKYMDSYDIVLVQDESL 270
              N+   + L ++  SY++++ + ESL
Sbjct: 2591 QENEEFQKSLNQHSGSYEVIVAEGESL 2617



>gi|17426161|gb|AAL38997.1|   macrophin 1 isoform 4 [Homo sapiens]
          Length = 5314

 Score = 30.8 bits (68), Expect = 3.0
 Identities = 19/87 (21%), Positives = 38/87 (43%)

Query: 184  LKGFKGVLIHIFNKHDGALRNTEYFNQLKDNSNIILLGDSQGDLRMADGVANVEHILKVG 243
            L+G + +     N+   AL +T+ F Q+ D     L        +     A +E +    
Sbjct: 3214 LQGLEDLAADRINRLQAALASTQQFQQMFDELRTWLDDKQSQQAKNCPISAKLERLQSQL 3273

Query: 244  YLNDRVDELLEKYMDSYDIVLVQDESL 270
              N+   + L ++  SY++++ + ESL
Sbjct: 3274 QENEEFQKSLNQHSGSYEVIVAEGESL 3300



>gi|6273778|gb|AAF06360.1|   trabeculin-alpha [Homo sapiens]
          Length = 5373

 Score = 30.8 bits (68), Expect = 3.0
 Identities = 19/87 (21%), Positives = 38/87 (43%)

Query: 184  LKGFKGVLIHIFNKHDGALRNTEYFNQLKDNSNIILLGDSQGDLRMADGVANVEHILKVG 243
            L+G + +     N+   AL +T+ F Q+ D     L        +     A +E +    
Sbjct: 2656 LQGLEDLAADRINRLQAALASTQQFQQMFDELRTWLDDKQSQQAKNCPISAKLERLQSQL 2715

Query: 244  YLNDRVDELLEKYMDSYDIVLVQDESL 270
              N+   + L ++  SY++++ + ESL
Sbjct: 2716 QENEEFQKSLNQHSGSYEVIVAEGESL 2742



>gi|5821434|dbj|BAA83821.1|   actin binding protein ABP620 [Homo sapiens]
          Length = 5430

 Score = 30.8 bits (68), Expect = 3.0
 Identities = 19/87 (21%), Positives = 38/87 (43%)

Query: 184  LKGFKGVLIHIFNKHDGALRNTEYFNQLKDNSNIILLGDSQGDLRMADGVANVEHILKVG 243
            L+G + +     N+   AL +T+ F Q+ D     L        +     A +E +    
Sbjct: 2712 LQGLEDLAADRINRLQAALASTQQFQQMFDELRTWLDDKQSQQAKNCPISAKLERLQSQL 2771

Query: 244  YLNDRVDELLEKYMDSYDIVLVQDESL 270
              N+   + L ++  SY++++ + ESL
Sbjct: 2772 QENEEFQKSLNQHSGSYEVIVAEGESL 2798






  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF excluding environmental samples
    Posted date:  Mar 15, 2005 10:11 AM
  Number of letters in database: 802,797,248
  Number of sequences in database:  2,367,365
  
Lambda     K      H
   0.322    0.139    0.398 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,990,958
Number of Sequences: 2367365
Number of extensions: 152022
Number of successful extensions: 300
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 297
Number of HSP's gapped (non-prelim): 3
length of query: 281
length of database: 46,038,991
effective HSP length: 106
effective length of query: 175
effective length of database: 32,244,045
effective search space: 5642707875
effective search space used: 5642707875
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 64 (29.3 bits)







 


 
Format
  


 


 
Show
  Graphical OverviewLinkoutSequence RetrievalNCBI-giAlignmentPSSMBioseq in HTMLPlain textASN.1XMLformat


 


 
Use new formatter
  Masking CharacterDefault(X for protein, n for nucleotide)Lower Case
Masking ColorBlackGreyRed



 


 
Number of:
  Descriptions01050100250500
Alignments01050100250500



 


 
Alignment view
  PairwisePairwise with identitiesquery-anchored with identitiesquery-anchored without identitiesflat query-anchored with identitiesflat query-anchored without identitiesHit Table


 


 
Format for PSI-BLAST
  with inclusion threshold:


 


 
Limit results by entrez query
   or select from:All organismsViruses [ORGN]Archaea [ORGN]Bacteria [ORGN]Eukaryota [ORGN]Viridiplantae [ORGN]Fungi [ORGN]Metazoa [ORGN]Arthropoda [ORGN]Vertebrata [ORGN]Mammalia [ORGN]Rodentia [ORGN]Primates [ORGN]-------------------Aeropyrum pernix [ORGN]Aquifex aeolicus [ORGN]Arabidopsis thaliana [ORGN]Bacillus subtilis [ORGN]Bos taurus [ORGN]Caenorhabditis elegans [ORGN]Canis familiaris[ORGN]Danio rerio [ORGN]Dictyostelium discoideum [ORGN]Drosophila melanogaster [ORGN]Escherichia coli [ORGN]Gallus gallus [ORGN]Homo sapiens [ORGN]Human immunodeficiency virus type 1 [ORGN]Methanococcus jannaschii [ORGN]Mus musculus [ORGN]Oryctolagus cuniculus [ORGN]Oryza sativa [ORGN]Ovis aries [ORGN]Plasmodium falciparum [ORGN]Rattus norvegicus [ORGN]Saccharomyces cerevisiae [ORGN]Schizosaccharomyces pombe [ORGN]Xenopus tropicalis[ORGN]Simian immunodeficiency virus [ORGN]Sus scrofa[ORGN]Synechocystis PCC6803 [ORGN]Takifugu rubripes [ORGN]Xenopus laevis [ORGN]Zea mays [ORGN]


 


 
Expect value range:
    







 or