BLASTP 2.2.10 [Oct-19-2004]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

RID: 1111057335-5883-92157478742.BLASTQ2

Query= hg16_dna_1|geneid_v1.2_predicted_protein_1|165_AA
         (164 letters)


Database: Non-redundant SwissProt sequences 
           164,271 sequences; 60,490,055 total letters

 
If you have any problems or questions with the results of this search 
please refer to the BLAST FAQs

Taxonomy reports

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|28558155|sp|Q8WXW3|PIBF_HUMAN  Progesterone-induced block...    29   0.89  
gi|3913957|sp|O14782|KF3C_HUMAN  Kinesin-like protein KIF3C        28   1.2   
gi|25008854|sp|Q99567|NU88_HUMAN  Nuclear pore complex prote...    27   2.6   
gi|55976668|sp|Q645U6|T2R41_PONPY  Taste receptor type 2 mem...    27   2.6   
gi|2495344|sp|Q92598|HS105_HUMAN  Heat-shock protein 105 kDa...    27   3.4   
gi|29839474|sp|P59536|T2R41_HUMAN  Taste receptor type 2 mem...    26   7.5   
gi|47117318|sp|Q9HAB8|PPCS_HUMAN  Phosphopantothenate--cyste...    25   9.9   
gi|544350|sp|P23945|FSHR_HUMAN  Follicle stimulating hormone...    25   9.9   
gi|20141240|sp|P49761|CLK3_HUMAN  Dual specificity protein k...    25   9.9   
gi|1718189|sp|P35916|VGFR3_HUMAN  Vascular endothelial growt...    25   9.9   
gi|34395670|sp|Q8IV61|GRP3_HUMAN  RAS guanyl releasing prote...    25   9.9   
gi|24212017|sp|Q9NU22|MDN1_HUMAN  Midasin (MIDAS-containing ...    25   9.9   


Alignments

>gi|28558155|sp|Q8WXW3|PIBF_HUMAN   Progesterone-induced blocking factor 1
          Length = 757

 Score = 28.9 bits (63), Expect = 0.89
 Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 2/57 (3%)

Query: 83  LKTDYILKKIEINEKVFENLHNMHYHYAYIQDDIFCSEKRLDLCKPGELWKQKFEIL 139
           LK DY+ K  E+ EK+ + LH        + + +   +K  D  K  EL KQ+ E +
Sbjct: 77  LKVDYLTKIEELEEKLNDALHQKQLLTLRLDNQLAFQQK--DASKYQELMKQEMETI 131



>gi|3913957|sp|O14782|KF3C_HUMAN   Kinesin-like protein KIF3C
          Length = 793

 Score = 28.5 bits (62), Expect = 1.2
 Identities = 32/150 (21%), Positives = 56/150 (37%), Gaps = 21/150 (14%)

Query: 10  GRESPDHKFHCQKFITKNCSKVTRRAERAKNETRFTLARFNFVFEVVTELDGYVQLEEGR 69
           GR   DH    QK +     ++  +  R +   +  + R     E+        Q  E +
Sbjct: 525 GRNIMDHTNEQQKMLELKRQEIAEQKRREREMQQEMMLRDEETMELRGTYTSLQQEVEVK 584

Query: 70  NNTLDKFIPKLVILKT-------DYILKKIEINEKVFENLHNMHYHYAYIQDDIFCSEKR 122
              L K   KL  +K        +YI  + ++ E   E    +   Y  I++ I      
Sbjct: 585 TKKLKKLYAKLQAVKAEIQDQHDEYIRVRQDLEEAQNEQTRELKLKYLIIENFI------ 638

Query: 123 LDLCKPGELWKQKFEILKWKYVDCKEKQEK 152
                P E   +K +I+   ++DC+E+Q K
Sbjct: 639 -----PPE---EKNKIMNRLFLDCEEEQWK 660



>gi|25008854|sp|Q99567|NU88_HUMAN   Nuclear pore complex protein Nup88 (Nucleoporin Nup88) (88 kDa
           nuclear pore complex protein)
          Length = 741

 Score = 27.3 bits (59), Expect = 2.6
 Identities = 21/78 (26%), Positives = 36/78 (46%), Gaps = 8/78 (10%)

Query: 82  ILKTDYILKKIEINEKVFENLHNM-HYHYAYIQDDIFCSEKRLDLCKPGELWKQKFEILK 140
           + +  YILK+    E++   +  +       ++D  +C E+R  L       ++  E L 
Sbjct: 571 VFREQYILKQDLAKEEIQRRVKLLCDQKKKQLEDLSYCREERKSL-------REMAERLA 623

Query: 141 WKYVDCKEKQEKTMLNME 158
            KY + KEKQE  M  M+
Sbjct: 624 DKYEEAKEKQEDIMNRMK 641



>gi|55976668|sp|Q645U6|T2R41_PONPY   Taste receptor type 2 member 41 (T2R41)
          Length = 307

 Score = 27.3 bits (59), Expect = 2.6
 Identities = 14/58 (24%), Positives = 26/58 (44%), Gaps = 1/58 (1%)

Query: 87  YILKKIEINEKVFENLHNMHYHYAYIQDDIFCSEKRLDLC-KPGELWKQKFEILKWKY 143
           Y   K+E +  +     ++H+H+  +    FCS   +  C K   +    F  LKW++
Sbjct: 69  YSAHKVEYSGGLSRQFFHLHWHFLNLATFXFCSWLSVLFCVKXANITHPTFLWLKWRF 126



>gi|2495344|sp|Q92598|HS105_HUMAN   Heat-shock protein 105 kDa (Heat shock 110 kDa protein) (Antigen
           NY-CO-25)
          Length = 858

 Score = 26.9 bits (58), Expect = 3.4
 Identities = 25/100 (25%), Positives = 46/100 (46%), Gaps = 10/100 (10%)

Query: 50  NFVFEVVTELDGYVQLEEGRNNTLDKFIPKLVILKTDYILKKIEINE-----KVFENLHN 104
           NF+  ++TE + ++  EEG +     ++ KL  L       K+   E     K+FE L  
Sbjct: 664 NFL-RLLTETEDWLY-EEGEDQAKQAYVDKLEELMKIGTPVKVRFQEAEERPKMFEELGQ 721

Query: 105 MHYHYAYIQDDIFCSEKR---LDLCKPGELWKQKFEILKW 141
              HYA I  D    +++   +D  +  ++ K   E+++W
Sbjct: 722 RLQHYAKIAADFRNKDEKYNHIDESEMKKVEKSVNEVMEW 761



>gi|29839474|sp|P59536|T2R41_HUMAN   Taste receptor type 2 member 41 (T2R41) (T2R59)
          Length = 307

 Score = 25.8 bits (55), Expect = 7.5
 Identities = 14/59 (23%), Positives = 27/59 (45%), Gaps = 1/59 (1%)

Query: 87  YILKKIEINEKVFENLHNMHYHYAYIQDDIFCSEKRLDLC-KPGELWKQKFEILKWKYV 144
           Y  +K+E +  +     ++H+H+       FCS   +  C K   +    F  LKW+++
Sbjct: 69  YSAQKVEYSGGLGRQFFHLHWHFLNSATFWFCSWLSVLFCVKIANITHSTFLWLKWRFL 127



>gi|47117318|sp|Q9HAB8|PPCS_HUMAN   Phosphopantothenate--cysteine ligase (Phosphopantothenoylcysteine
           synthetase) (PPC synthetase)
          Length = 311

 Score = 25.4 bits (54), Expect = 9.9
 Identities = 10/26 (38%), Positives = 17/26 (65%)

Query: 81  VILKTDYILKKIEINEKVFENLHNMH 106
           ++L  + I K +EI EK+ +NL + H
Sbjct: 278 LLLSEEEIEKGVEIEEKIVDNLQSRH 303



>gi|544350|sp|P23945|FSHR_HUMAN   Follicle stimulating hormone receptor precursor (FSH-R)
           (Follitropin receptor)
          Length = 695

 Score = 25.4 bits (54), Expect = 9.9
 Identities = 29/115 (25%), Positives = 51/115 (44%), Gaps = 23/115 (20%)

Query: 2   NCINRVQSGRESPDHKFHCQKF-ITKNCSKVTRRAERAKNETRFTLARFNFVFEVVTELD 60
           +C NRV          F CQ+  +T+  S + R A     E RF L +   + +      
Sbjct: 24  HCSNRV----------FLCQESKVTEIPSDLPRNAI----ELRFVLTKLRVIQKGAFSGF 69

Query: 61  GYVQ-LEEGRNNTLDKF-------IPKLVILKTDYILKKIEINEKVFENLHNMHY 107
           G ++ +E  +N+ L+         +PKL  ++ +     + IN + F+NL N+ Y
Sbjct: 70  GDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQY 124



>gi|20141240|sp|P49761|CLK3_HUMAN   Dual specificity protein kinase CLK3 (CDC like kinase 3)
          Length = 490

 Score = 25.4 bits (54), Expect = 9.9
 Identities = 8/27 (29%), Positives = 16/27 (59%)

Query: 16  HKFHCQKFITKNCSKVTRRAERAKNET 42
           H  HC K  T++CS  + R++++   +
Sbjct: 106 HAHHCHKRRTRSCSSASSRSQQSSKRS 132



>gi|1718189|sp|P35916|VGFR3_HUMAN   Vascular endothelial growth factor receptor 3 precursor (VEGFR-3)
           (Tyrosine-protein kinase receptor FLT4)
          Length = 1298

 Score = 25.4 bits (54), Expect = 9.9
 Identities = 19/93 (20%), Positives = 39/93 (41%), Gaps = 10/93 (10%)

Query: 56  VTELDGYVQLEEGRNNTLDKFIPKLVILKTDYILKKIEINEKVFENLHNMHYHYAYIQDD 115
           +  LD + +  EG+N T+ K + +   +   Y   K  ++ KV ++   ++++   I D 
Sbjct: 501 IESLDTWTEFVEGKNKTVSKLVIQNANVSAMY---KCVVSNKVGQDERLIYFYVTTIPDG 557

Query: 116 IFCSEKRLDLCKPG-------ELWKQKFEILKW 141
                K  +    G       +    K+E L+W
Sbjct: 558 FTIESKPSEELLEGQPVLLSCQADSYKYEHLRW 590



>gi|34395670|sp|Q8IV61|GRP3_HUMAN   RAS guanyl releasing protein 3 (Calcium and DAG-regulated guanine
           nucleotide exchange factor III) (Guanine nucleotide
           exchange factor for Rap1)
          Length = 690

 Score = 25.4 bits (54), Expect = 9.9
 Identities = 19/68 (27%), Positives = 29/68 (42%), Gaps = 9/68 (13%)

Query: 70  NNTLDK-FIPKLVILKTDYILKKIEINEKVFENLHNMHYHYAYIQDDIFCSEKRLDLCKP 128
           N  LD  ++P++V+L   + L   E+ EK+     N             C+E RL +C  
Sbjct: 26  NGELDNSYLPRIVLLMHRWYLSSTELAEKLLCMYRN--------ATGESCNEFRLKICYF 77

Query: 129 GELWKQKF 136
              W  KF
Sbjct: 78  MRYWILKF 85



>gi|24212017|sp|Q9NU22|MDN1_HUMAN   Midasin (MIDAS-containing protein)
          Length = 5596

 Score = 25.4 bits (54), Expect = 9.9
 Identities = 10/24 (41%), Positives = 14/24 (58%)

Query: 20   CQKFITKNCSKVTRRAERAKNETR 43
            C KF+ K  +K+ R  E  KNE +
Sbjct: 1664 CLKFLIKRLAKIVRLTEYQKNELK 1687






  Database: Non-redundant SwissProt sequences
    Posted date:  Mar 15, 2005 10:11 AM
  Number of letters in database: 60,490,055
  Number of sequences in database:  164,271
  
Lambda     K      H
   0.323    0.138    0.422 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 446,286
Number of Sequences: 164271
Number of extensions: 17793
Number of successful extensions: 52
Number of sequences better than 10.0: 0
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 52
Number of HSP's gapped (non-prelim): 0
length of query: 164
length of database: 6,971,665
effective HSP length: 88
effective length of query: 76
effective length of database: 5,777,945
effective search space: 439123820
effective search space used: 439123820
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 54 (25.4 bits)







 


 
Format
  


 


 
Show
  Graphical OverviewLinkoutSequence RetrievalNCBI-giAlignmentPSSMBioseq in HTMLPlain textASN.1XMLformat


 


 
Use new formatter
  Masking CharacterDefault(X for protein, n for nucleotide)Lower Case
Masking ColorBlackGreyRed



 


 
Number of:
  Descriptions01050100250500
Alignments01050100250500



 


 
Alignment view
  PairwisePairwise with identitiesquery-anchored with identitiesquery-anchored without identitiesflat query-anchored with identitiesflat query-anchored without identitiesHit Table


 


 
Format for PSI-BLAST
  with inclusion threshold:


 


 
Limit results by entrez query
   or select from:All organismsViruses [ORGN]Archaea [ORGN]Bacteria [ORGN]Eukaryota [ORGN]Viridiplantae [ORGN]Fungi [ORGN]Metazoa [ORGN]Arthropoda [ORGN]Vertebrata [ORGN]Mammalia [ORGN]Rodentia [ORGN]Primates [ORGN]-------------------Aeropyrum pernix [ORGN]Aquifex aeolicus [ORGN]Arabidopsis thaliana [ORGN]Bacillus subtilis [ORGN]Bos taurus [ORGN]Caenorhabditis elegans [ORGN]Canis familiaris[ORGN]Danio rerio [ORGN]Dictyostelium discoideum [ORGN]Drosophila melanogaster [ORGN]Escherichia coli [ORGN]Gallus gallus [ORGN]Homo sapiens [ORGN]Human immunodeficiency virus type 1 [ORGN]Methanococcus jannaschii [ORGN]Mus musculus [ORGN]Oryctolagus cuniculus [ORGN]Oryza sativa [ORGN]Ovis aries [ORGN]Plasmodium falciparum [ORGN]Rattus norvegicus [ORGN]Saccharomyces cerevisiae [ORGN]Schizosaccharomyces pombe [ORGN]Xenopus tropicalis[ORGN]Simian immunodeficiency virus [ORGN]Sus scrofa[ORGN]Synechocystis PCC6803 [ORGN]Takifugu rubripes [ORGN]Xenopus laevis [ORGN]Zea mays [ORGN]


 


 
Expect value range:
    







 or