RID=1111064676-6234-84139863418.BLASTQ2, hg16_dna_2|geneid_v1.2_predicted_protein_2|109

BLASTP 2.2.10 [Oct-19-2004]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
RID: 1111064676-6234-84139863418.BLASTQ2
Query= hg16_dna_2|geneid_v1.2_predicted_protein_2|109_AA (108 letters)
Database: Non-redundant SwissProt sequences 164,271 sequences; 60,490,055 total letters
If you have any problems or questions with the results of this search
please refer to the BLAST FAQs
Taxonomy reports
Distribution of 58 Blast Hits on the Query Sequence


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|17380294|sp|Q9Y2Y1|RPC11_HUMAN  DNA-directed RNA polymera...   242   1e-64 
gi|46397018|sp|Q9CQZ7|RPC11_MOUSE  DNA-directed RNA polymera...   240   5e-64 
gi|3334319|sp|Q04307|RPC11_YEAST  DNA-directed RNA polymeras...   109   1e-24 
gi|3334318|sp|O13896|RPC11_SCHPO  DNA-directed RNA polymeras...   102   3e-22 
gi|3024570|sp|Q58548|RPOM_METJA  DNA-directed RNA polymerase...    71   5e-13 
gi|3024569|sp|Q56254|RPOM_THECE  DNA-directed RNA polymerase...    67   1e-11 
gi|586083|sp|Q07271|RPOM_SULAC  DNA-directed RNA polymerase ...    66   2e-11 
gi|548819|sp|P36958|RPB9_DROME  DNA-directed RNA polymerase ...    61   5e-10 
gi|3287901|sp|O27369|RPOM_METTH  DNA-directed RNA polymerase...    60   2e-09 
gi|46396717|sp|P60898|RPB9_MOUSE  DNA-directed RNA polymeras...    53   1e-07 
gi|1351227|sp|P49373|TFS2_SCHPO  Transcription elongation fa...    51   7e-07 
gi|135660|sp|P20232|TFS2_DROME  Transcription elongation fac...    50   1e-06 
gi|1729915|sp|P07273|TFS2_YEAST  Transcription elongation fa...    50   2e-06 
gi|28380825|sp|P10711|TCEA1_MOUSE  Transcription elongation ...    49   2e-06 
gi|1174652|sp|P23193|TCEA1_HUMAN  Transcription elongation f...    49   2e-06 
gi|28380172|sp|O75764|TCEA3_HUMAN  Transcription elongation ...    49   3e-06 
gi|28381402|sp|P23881|TCEA3_MOUSE  Transcription elongation ...    49   3e-06 
gi|9297043|sp|O94703|RPA9_SCHPO  DNA-directed RNA polymerase...    49   4e-06 
gi|1729914|sp|P52652|TFS2_CAEEL  Putative transcription elon...    48   6e-06 
gi|28380177|sp|Q15560|TCEA2_HUMAN  Transcription elongation ...    48   6e-06 
gi|28380169|sp|Q63799|TCEA2_RAT  Transcription elongation fa...    47   1e-05 
gi|28380213|sp|Q9QVN7|TCEA2_MOUSE  Transcription elongation ...    47   1e-05 
gi|133341|sp|P27999|RPB9_YEAST  DNA-directed RNA polymerase ...    46   2e-05 
gi|3287902|sp|O29033|RPOM_ARCFU  DNA-directed RNA polymerase...    45   3e-05 
gi|51701953|sp|Q6FS48|RPB9_CANGA  DNA-directed RNA polymeras...    45   5e-05 
gi|417695|sp|P32529|RPA9_YEAST  DNA-directed RNA polymerase ...    42   3e-04 
gi|51701975|sp|Q755B3|RPB9_ASHGO  DNA-directed RNA polymeras...    41   6e-04 
gi|15214253|sp|O74635|RPB9_SCHPO  DNA-directed RNA polymeras...    40   0.001 
gi|135659|sp|P27948|TFS2_ASFB7  Transcription factor S-II-re...    37   0.008 
gi|51702023|sp|Q8SQU1|RPB9_ENCCU  DNA-directed RNA polymeras...    37   0.014 
gi|54036247|sp|Q9WVS6|PRKN_MOUSE  Parkin (Ubiquitin E3 ligas...    34   0.094 
gi|54036214|sp|Q9JK66|PRKN_RAT  Parkin (Ubiquitin E3 ligase ...    33   0.12  
gi|27734543|sp|Q9AGG3|RUBY_PORGI  Rubrerythrin (RR)                32   0.46  
gi|54036217|sp|O60260|PRKN_HUMAN  Parkin (Ubiquitin E3 ligas...    31   0.79  
gi|56404700|sp|O57187|RPO5_VACCA  DNA-directed RNA polymeras...    30   1.4   
gi|133388|sp|P21603|RPO5_VACCV  DNA-directed RNA polymerase ...    30   1.4   
gi|464678|sp|P33796|RPO5_VARV  DNA-directed RNA polymerase 3...    30   1.4   
gi|133387|sp|P21082|RPO5_VACCC  DNA-directed RNA polymerase ...    30   1.4   
gi|47117282|sp|Q97BH4|RS27A_THEVO  30S ribosomal protein S27ae     30   1.8   
gi|47117320|sp|Q9HJ78|RS27A_THEAC  30S ribosomal protein S27ae     30   1.8   
gi|30915970|sp|Q50925|HAO_NITEU  Hydroxylamine oxidoreductas...    29   3.0   
gi|7388044|sp|O29152|RS27A_ARCFU  30S ribosomal protein S27ae      29   3.0   
gi|47606184|sp|Q8JHW2|TSP3_BRARE  Thrombospondin-3 precursor...    28   3.9   
gi|2500684|sp|Q58144|RUBY_METJA  Putative rubrerythrin             28   3.9   
gi|34395819|sp|Q97Z83|PRIS_SULSO  Probable DNA primase small...    28   3.9   
gi|48428570|sp|O75443|TECA_HUMAN  Alpha-tectorin precursor         28   3.9   
gi|2822109|sp|P14730|WDNM_RAT  WDNM1 protein precursor             28   3.9   
gi|48428565|sp|O08523|TECA_MOUSE  Alpha-tectorin precursor         28   5.1   
gi|14423964|sp|Q59046|TOP1_METJA  DNA topoisomerase I (Omega...    28   5.1   
gi|1176857|sp|P46494|Y656A_HAEIN  Hypothetical protein HI0656.1    28   6.7   
gi|51702194|sp|Q9JLM4|Z261_MOUSE  Zinc finger protein 261 (D...    28   6.7   
gi|2497126|sp|Q05123|ARP9_YEAST  Actin-like protein ARP9 (Ch...    28   6.7   
gi|12643811|sp|Q9NJ15|PCSK5_BRACL  Proprotein convertase sub...    28   6.7   
gi|20141761|sp|P51591|RUBY_CLOPE  Rubrerythrin (RR)                28   6.7   
gi|6225190|sp|Q91082|COLI_LEPOS  Corticotropin-lipotropin pr...    28   6.7   
gi|55583950|sp|Q8LE43|DOF21_ARATH  Dof zinc finger protein D...    27   8.8   
gi|14423978|sp|Q9PLZ2|TOP1_CAMJE  DNA topoisomerase I (Omega...    27   8.8   
gi|12229625|sp|O70467|ANM3_RAT  Protein arginine N-methyltra...    27   8.8   


Alignments

>gi|17380294|sp|Q9Y2Y1|RPC11_HUMAN   DNA-directed RNA polymerases III 12.5 kDa polypeptide (RNA
           polymerase III C11 subunit) (HsC11p) (hRPC11) (My010
           protein)
          Length = 108

 Score =  242 bits (618), Expect = 1e-64
 Identities = 107/108 (99%), Positives = 108/108 (100%)

Query: 1   MLLFCPGCGNGLIVEEGQRCHRFSCNTCPYVHNITRKVTNRKYPKLKEVDDVLGGAAAWE 60
           MLLFCPGCGNGLIVEEGQRCHRF+CNTCPYVHNITRKVTNRKYPKLKEVDDVLGGAAAWE
Sbjct: 1   MLLFCPGCGNGLIVEEGQRCHRFACNTCPYVHNITRKVTNRKYPKLKEVDDVLGGAAAWE 60

Query: 61  NVDSTAESCPKCEHPRAYFMQLQTRSADEPMTTFYKCCNAQCGHRWRD 108
           NVDSTAESCPKCEHPRAYFMQLQTRSADEPMTTFYKCCNAQCGHRWRD
Sbjct: 61  NVDSTAESCPKCEHPRAYFMQLQTRSADEPMTTFYKCCNAQCGHRWRD 108



>gi|46397018|sp|Q9CQZ7|RPC11_MOUSE   DNA-directed RNA polymerases III 12.5 kDa polypeptide (RNA
           polymerase III C11 subunit)
          Length = 108

 Score =  240 bits (613), Expect = 5e-64
 Identities = 106/108 (98%), Positives = 107/108 (99%)

Query: 1   MLLFCPGCGNGLIVEEGQRCHRFSCNTCPYVHNITRKVTNRKYPKLKEVDDVLGGAAAWE 60
           MLLFCPGCGNGLIVEEGQRCHRF+CNTCPYVHNITRKVTNRKYPKLKEVDDVLGGAAAWE
Sbjct: 1   MLLFCPGCGNGLIVEEGQRCHRFACNTCPYVHNITRKVTNRKYPKLKEVDDVLGGAAAWE 60

Query: 61  NVDSTAESCPKCEHPRAYFMQLQTRSADEPMTTFYKCCNAQCGHRWRD 108
           NVDSTAE CPKCEHPRAYFMQLQTRSADEPMTTFYKCCNAQCGHRWRD
Sbjct: 61  NVDSTAEPCPKCEHPRAYFMQLQTRSADEPMTTFYKCCNAQCGHRWRD 108



>gi|3334319|sp|Q04307|RPC11_YEAST   DNA-directed RNA polymerases III 12.5 kDa polypeptide
          Length = 110

 Score =  109 bits (273), Expect = 1e-24
 Identities = 58/113 (51%), Positives = 69/113 (61%), Gaps = 9/113 (7%)

Query: 1   MLLFCPGCGNGLIVEEGQR-CHRFSCNTCPYVHNITR-KVTNRKYPKLKEVDDVLGGAAA 58
           ML FCP C N L++  G    +  +C +CPY   I   ++ +RK    KEVDDVLGG   
Sbjct: 1   MLSFCPSCNNMLLITSGDSGVYTLACRSCPYEFPIEGIEIYDRKKLPRKEVDDVLGGG-- 58

Query: 59  WENVDSTAESCPK---CEHPRAYFMQLQTRSADEPMTTFYKCCNAQCGHRWRD 108
           W+NVD T   CP    C    AYF QLQ RSADEPMTTFYKC N  CGHRW++
Sbjct: 59  WDNVDQTKTQCPNYDTCGGESAYFFQLQIRSADEPMTTFYKCVN--CGHRWKE 109



>gi|3334318|sp|O13896|RPC11_SCHPO   DNA-directed RNA polymerases III 12.5 kDa polypeptide
          Length = 109

 Score =  102 bits (253), Expect = 3e-22
 Identities = 56/110 (50%), Positives = 70/110 (63%), Gaps = 9/110 (8%)

Query: 4   FCPGCGNGLIV---EEGQRCHRFSCNTCPYVHNITRKVTNRKYPKLKEVDDVLGGAAAWE 60
           FCP CGN LIV   EEG+    F C TCPY   I+  + +R     KEVDDVLGG  A+E
Sbjct: 3   FCPTCGNHLIVAVDEEGRNA--FDCRTCPYHFPISTFLYSRHEFAQKEVDDVLGGEEAFE 60

Query: 61  NVDSTAESCP--KCEHPRAYFMQLQTRSADEPMTTFYKCCNAQCGHRWRD 108
           +   T  +C   KC++ RAYF QLQ RSADEPM+TFY+C   +C  +WR+
Sbjct: 61  SNQQTEVTCENTKCDNNRAYFFQLQIRSADEPMSTFYRC--TKCKFQWRE 108



>gi|3024570|sp|Q58548|RPOM_METJA   DNA-directed RNA polymerase subunit M
          Length = 108

 Score = 71.2 bits (173), Expect = 5e-13
 Identities = 38/112 (33%), Positives = 58/112 (51%), Gaps = 10/112 (8%)

Query: 1   MLLFCPGCGNGLIVEEGQRCHRFSCNTCPYVHNIT----RKVTNRKYPKLKEVDDVLGGA 56
           M+ FCP C N ++ ++G    +  C  C Y    T    ++   +++ + K+    +  +
Sbjct: 1   MVKFCPKCNNLMLPKDG----KLKCAVCGYEEETTAEGSKEYEYKEHLENKKEKITVIES 56

Query: 57  AAWENVDSTAESCPKCEHPRAYFMQLQTRSADEPMTTFYKCCNAQCGHRWRD 108
              E + +T   CPKC H  AY+   QTR ADEP T FYKC   +CGH WR+
Sbjct: 57  EGLETLPTTRIECPKCGHNEAYWWLQQTRCADEPETRFYKC--KKCGHTWRE 106



>gi|3024569|sp|Q56254|RPOM_THECE   DNA-directed RNA polymerase subunit M
          Length = 110

 Score = 67.0 bits (162), Expect = 1e-11
 Identities = 35/109 (32%), Positives = 57/109 (52%), Gaps = 9/109 (8%)

Query: 4   FCPGCGNGLIVEEGQRCHRFSCNTCPYVHNITRKVTNRKYPKLKEV-----DDVLGGAAA 58
           FCP CGN ++ +  ++   + C +C Y      +    K    +EV     + ++     
Sbjct: 3   FCPKCGNLMLPDRKRKV--WVCRSCGYEEPFDEEKDREKTVIKQEVKHKPDEGIVVIEQD 60

Query: 59  WENVDSTAESCPKCEHPRAYFMQLQTRSADEPMTTFYKCCNAQCGHRWR 107
            + + +T  +CPKC +  AY+ ++QTR+ DEP T FYKC   +CGH WR
Sbjct: 61  LKTLPTTKITCPKCGNDTAYWWEMQTRAGDEPSTIFYKC--TKCGHTWR 107



>gi|586083|sp|Q07271|RPOM_SULAC   DNA-directed RNA polymerase subunit M
          Length = 202

 Score = 65.9 bits (159), Expect = 2e-11
 Identities = 40/112 (35%), Positives = 54/112 (48%), Gaps = 6/112 (5%)

Query: 1   MLLFCPGCGNGLIVEEGQRCHRFSCNTCPYVHNITRK---VTNRKYPKLKEVDDVLGGAA 57
           ++ FCP CG+ ++  +      + C+ C Y+    +K   +T       K    VL    
Sbjct: 91  VMKFCPKCGSMMMPRKENGKTVYKCSKCAYIDTENQKEAKITTVIKHSAKAKTLVLASDM 150

Query: 58  AWENVDSTAE-SCPKCEHPRAYFMQLQTRSADEPMTTFYKCCNAQCGHRWRD 108
               V  T   SCP C +  AYF  LQTRSADEP T FYKC   +CG  WR+
Sbjct: 151 PNPGVQLTRGISCPSCGNDEAYFWILQTRSADEPATRFYKC--TKCGKVWRE 200



>gi|548819|sp|P36958|RPB9_DROME   DNA-directed RNA polymerase II 15.1 kDa polypeptide
          Length = 129

 Score = 61.2 bits (147), Expect = 5e-10
 Identities = 32/110 (29%), Positives = 51/110 (46%), Gaps = 5/110 (4%)

Query: 4   FCPGCGNGLIVEEGQ--RCHRFSCNTCPYVHNITRKV--TNRKYPKLKEVDDVLGGAAAW 59
           FC  C N L  +E +  +   ++C  C Y           N+   ++ E+  ++    + 
Sbjct: 20  FCQECNNMLYPKEDKENKILLYACRNCDYKQKTNSNCIYVNKIMHEIDELTHIVPDVISD 79

Query: 60  ENVDSTAE-SCPKCEHPRAYFMQLQTRSADEPMTTFYKCCNAQCGHRWRD 108
             +  T + +CPKC H  A F + QTR A+E M  +Y C N  C HRW +
Sbjct: 80  PTLPRTEDHACPKCSHREAVFFKAQTRRAEEEMRLYYVCTNQNCTHRWTE 129



>gi|3287901|sp|O27369|RPOM_METTH   DNA-directed RNA polymerase subunit M
          Length = 136

 Score = 59.7 bits (143), Expect = 2e-09
 Identities = 37/108 (34%), Positives = 55/108 (50%), Gaps = 11/108 (10%)

Query: 4   FCPGCGNGLIVEEGQRCHRFSCNTCPYVHNITRKVTNRKYPKLKEVD---DVLGGAAAWE 60
           FCP CG  +   EG    +F C  C Y  +IT K+ + KY   +EV+    ++       
Sbjct: 35  FCPKCGAVMFPSEG----KFKCQ-CGYEKDITDKLKD-KYRVSEEVEAKETIIFTGDDVN 88

Query: 61  NVDSTAESCPKCEHPRAYFMQLQTRSADEPMTTFYKCCNAQCGHRWRD 108
            + +T   CPKC +  A++   QTR ADE  T F++C   +C H WR+
Sbjct: 89  TLPTTRVECPKCGNMEAFWWLQQTRRADESETRFFRC--TRCKHTWRE 134



>gi|46396717|sp|P60898|RPB9_MOUSE   DNA-directed RNA polymerase II 14.5 kDa polypeptide (RPB9)
           (RPB14.5)
 gi|548702|sp|P36954|RPB9_HUMAN   DNA-directed RNA polymerase II 14.5 kDa polypeptide (RPB9)
           (RPB14.5)
 gi|46396569|sp|P60899|RPB9_PIG   DNA-directed RNA polymerase II 14.5 kDa polypeptide (RPB9)
           (RPB14.5)
          Length = 125

 Score = 53.1 bits (126), Expect = 1e-07
 Identities = 29/110 (26%), Positives = 47/110 (42%), Gaps = 5/110 (4%)

Query: 4   FCPGCGNGLIVEEGQ--RCHRFSCNTCPYVHNITRKV--TNRKYPKLKEVDDVLGGAAAW 59
           FC  C N L  +E +  R   ++C  C Y           N+   ++ E+  ++   +  
Sbjct: 16  FCQECNNMLYPKEDKENRILLYACRNCDYQQEADNSCIYVNKITHEVDELTQIIADVSQD 75

Query: 60  ENVDSTAES-CPKCEHPRAYFMQLQTRSADEPMTTFYKCCNAQCGHRWRD 108
             +  T +  C KC H  A F Q  +  A++ M  +Y C    CGHRW +
Sbjct: 76  PTLPRTEDHPCQKCGHKEAVFFQSHSARAEDAMRLYYVCTAPHCGHRWTE 125



>gi|1351227|sp|P49373|TFS2_SCHPO   Transcription elongation factor S-II (TFIIS)
          Length = 293

 Score = 50.8 bits (120), Expect = 7e-07
 Identities = 21/40 (52%), Positives = 29/40 (72%), Gaps = 2/40 (5%)

Query: 68  SCPKCEHPRAYFMQLQTRSADEPMTTFYKCCNAQCGHRWR 107
           +C KC+  +  + Q+QTRSADEPMTTF +C    CG+RW+
Sbjct: 254 TCGKCKQKKVSYYQMQTRSADEPMTTFCEC--TVCGNRWK 291



>gi|135660|sp|P20232|TFS2_DROME   Transcription elongation factor S-II (RNA polymerase II elongation
           factor DMS-II) (TFIIS)
          Length = 313

 Score = 50.1 bits (118), Expect = 1e-06
 Identities = 22/39 (56%), Positives = 27/39 (69%), Gaps = 2/39 (5%)

Query: 69  CPKCEHPRAYFMQLQTRSADEPMTTFYKCCNAQCGHRWR 107
           C KC+     + QLQTRSADEPMTTF  C   +CG+RW+
Sbjct: 275 CAKCKKRNCTYNQLQTRSADEPMTTFVMC--NECGNRWK 311



>gi|1729915|sp|P07273|TFS2_YEAST   Transcription elongation factor S-II (DNA strand transfer protein
           alpha) (STP-alpha) (DNA strand transferase 1)
           (Pyrimidine pathway regulatory protein 2)
          Length = 309

 Score = 49.7 bits (117), Expect = 2e-06
 Identities = 21/40 (52%), Positives = 28/40 (70%), Gaps = 2/40 (5%)

Query: 68  SCPKCEHPRAYFMQLQTRSADEPMTTFYKCCNAQCGHRWR 107
           +C KC+  +  + QLQTRSADEP+TTF  C    CG+RW+
Sbjct: 270 TCGKCKEKKVSYYQLQTRSADEPLTTFCTC--EACGNRWK 307



>gi|28380825|sp|P10711|TCEA1_MOUSE   Transcription elongation factor A protein 1 (Transcription
           elongation factor S-II protein 1) (Transcription
           elongation factor TFIIS.o)
          Length = 301

 Score = 49.3 bits (116), Expect = 2e-06
 Identities = 21/40 (52%), Positives = 28/40 (70%), Gaps = 2/40 (5%)

Query: 68  SCPKCEHPRAYFMQLQTRSADEPMTTFYKCCNAQCGHRWR 107
           +C KC+     + Q+QTRSADEPMTTF  C   +CG+RW+
Sbjct: 262 TCGKCKKKNCTYTQVQTRSADEPMTTFVVC--NECGNRWK 299



>gi|1174652|sp|P23193|TCEA1_HUMAN   Transcription elongation factor A protein 1 (Transcription
           elongation factor S-II protein 1) (Transcription
           elongation factor TFIIS.o)
          Length = 301

 Score = 49.3 bits (116), Expect = 2e-06
 Identities = 21/40 (52%), Positives = 28/40 (70%), Gaps = 2/40 (5%)

Query: 68  SCPKCEHPRAYFMQLQTRSADEPMTTFYKCCNAQCGHRWR 107
           +C KC+     + Q+QTRSADEPMTTF  C   +CG+RW+
Sbjct: 262 TCGKCKKKNCTYTQVQTRSADEPMTTFVVC--NECGNRWK 299



>gi|28380172|sp|O75764|TCEA3_HUMAN   Transcription elongation factor A protein 3 (Transcription
           elongation factor S-II protein 3) (Transcription
           elongation factor TFIIS.h)
          Length = 348

 Score = 48.9 bits (115), Expect = 3e-06
 Identities = 21/39 (53%), Positives = 27/39 (69%), Gaps = 2/39 (5%)

Query: 69  CPKCEHPRAYFMQLQTRSADEPMTTFYKCCNAQCGHRWR 107
           C KC+     + Q+QTRSADEPMTTF  C   +CG+RW+
Sbjct: 310 CSKCKKKNCTYNQVQTRSADEPMTTFVLC--NECGNRWK 346



>gi|28381402|sp|P23881|TCEA3_MOUSE   Transcription elongation factor A protein 3 (Transcription
           elongation factor S-II protein 3) (Transcription
           elongation factor TFIIS.h)
          Length = 347

 Score = 48.9 bits (115), Expect = 3e-06
 Identities = 21/39 (53%), Positives = 27/39 (69%), Gaps = 2/39 (5%)

Query: 69  CPKCEHPRAYFMQLQTRSADEPMTTFYKCCNAQCGHRWR 107
           C KC+     + Q+QTRSADEPMTTF  C   +CG+RW+
Sbjct: 309 CSKCKKKNCTYNQVQTRSADEPMTTFVLC--NECGNRWK 345



>gi|9297043|sp|O94703|RPA9_SCHPO   DNA-directed RNA polymerase I 13.1 kDa polypeptide
          Length = 119

 Score = 48.5 bits (114), Expect = 4e-06
 Identities = 34/114 (29%), Positives = 51/114 (44%), Gaps = 14/114 (12%)

Query: 2   LLFCPGCGNGLIVEEGQRCHRFSCNTCPYVHN--------ITRKVTNRKYPK-LKEVDDV 52
           L+FC  CGN L   E       +C+ C  V+         +  K +   +P  LK    +
Sbjct: 7   LIFCSECGNLL---ESTTAQWTTCDQCQSVYPSEQFANLVVETKSSASAFPSALKLKHSI 63

Query: 53  LGGAAAWENVDSTAESCPKCEHPRAYFMQLQTRSADEPMTTFYKCCNAQCGHRW 106
           +   +  E   +  E CPKC +    F  LQ RSADE  T FY+C   +C +++
Sbjct: 64  VQVESQKEEAATIEEKCPKCGNDHMTFHTLQLRSADEGSTVFYEC--PRCAYKF 115



>gi|1729914|sp|P52652|TFS2_CAEEL   Putative transcription elongation factor S-II (TFIIS)
          Length = 308

 Score = 47.8 bits (112), Expect = 6e-06
 Identities = 21/39 (53%), Positives = 26/39 (66%), Gaps = 2/39 (5%)

Query: 69  CPKCEHPRAYFMQLQTRSADEPMTTFYKCCNAQCGHRWR 107
           C KC      + QLQTRS+DEPMTTF  C   +CG+RW+
Sbjct: 270 CGKCGKKNCTYTQLQTRSSDEPMTTFVFC--LECGNRWK 306



>gi|28380177|sp|Q15560|TCEA2_HUMAN   Transcription elongation factor A protein 2 (Transcription
           elongation factor S-II protein 2) (Testis-specific S-II)
           (Transcription elongation factor TFIIS.l)
          Length = 299

 Score = 47.8 bits (112), Expect = 6e-06
 Identities = 20/40 (50%), Positives = 27/40 (67%), Gaps = 2/40 (5%)

Query: 68  SCPKCEHPRAYFMQLQTRSADEPMTTFYKCCNAQCGHRWR 107
           +C KC      + Q+QTRS+DEPMTTF  C   +CG+RW+
Sbjct: 260 TCGKCRKKNCTYTQVQTRSSDEPMTTFVVC--NECGNRWK 297



>gi|28380169|sp|Q63799|TCEA2_RAT   Transcription elongation factor A protein 2 (Transcription
           elongation factor S-II protein 2) (Testis-specific S-II)
           (Protein S-II-T1) (Transcription elongation factor
           TFIIS.l)
          Length = 299

 Score = 47.0 bits (110), Expect = 1e-05
 Identities = 21/40 (52%), Positives = 28/40 (70%), Gaps = 2/40 (5%)

Query: 68  SCPKCEHPRAYFMQLQTRSADEPMTTFYKCCNAQCGHRWR 107
           +C KC      + Q+QTRS+DEPMTT Y  CN +CG+RW+
Sbjct: 260 TCNKCRKKNCTYTQVQTRSSDEPMTT-YVVCN-ECGNRWK 297



>gi|28380213|sp|Q9QVN7|TCEA2_MOUSE   Transcription elongation factor A protein 2 (Transcription
           elongation factor S-II protein 2) (Testis-specific S-II)
           (Protein S-II-T1) (Transcription elongation factor
           TFIIS.l)
          Length = 299

 Score = 47.0 bits (110), Expect = 1e-05
 Identities = 21/40 (52%), Positives = 28/40 (70%), Gaps = 2/40 (5%)

Query: 68  SCPKCEHPRAYFMQLQTRSADEPMTTFYKCCNAQCGHRWR 107
           +C KC      + Q+QTRS+DEPMTT Y  CN +CG+RW+
Sbjct: 260 TCNKCRKKNCTYTQVQTRSSDEPMTT-YVVCN-ECGNRWK 297



>gi|133341|sp|P27999|RPB9_YEAST   DNA-directed RNA polymerase II subunit 9 (DNA-directed RNA
           polymerase II 14.2 kDa polypeptide) (B12.6)
          Length = 122

 Score = 45.8 bits (107), Expect = 2e-05
 Identities = 30/105 (28%), Positives = 40/105 (38%), Gaps = 6/105 (5%)

Query: 4   FCPGCGNGLIVEEGQRCHR--FSCNTCPYVHNITRKVTNRK--YPKLKEVDDVLGGAAAW 59
           FC  C N L   E +  +R  F C TC YV      +  R      + E   V+    + 
Sbjct: 6   FCRDCNNMLYPREDKENNRLLFECRTCSYVEEAGSPLVYRHELITNIGETAGVVQDIGSD 65

Query: 60  ENVDSTAESCPKCEHPRAYFMQLQTRSADEPMTTFYKCCNAQCGH 104
             +  +   CPKC      F Q Q R  D  M  F+ C +  C H
Sbjct: 66  PTLPRSDRECPKCHSRENVFFQSQQRRKDTSMVLFFVCLS--CSH 108



>gi|3287902|sp|O29033|RPOM_ARCFU   DNA-directed RNA polymerase subunit M
          Length = 103

 Score = 45.4 bits (106), Expect = 3e-05
 Identities = 31/106 (29%), Positives = 48/106 (45%), Gaps = 8/106 (7%)

Query: 4   FCPGCGNGLIVEEGQRCHRFSCNTCPYVHNIT-RKVTNRKYPKLKEVDDVLGGAAAWENV 62
           FCP C   L++ +G +     C  C Y       +    K  + KE   V+ G    + +
Sbjct: 3   FCPKC-KSLMIYQGDK---LVCRKCGYEKEADDSEELVIKVERNKEDVPVIEGENL-KTL 57

Query: 63  DSTAESCPKCEHPRAYFMQLQTRSADEPMTTFYKCCNAQCGHRWRD 108
            +T   CP C H  A++   Q R+ADE    F++C   +CG  WR+
Sbjct: 58  PTTKAICPACGHNEAFWWLRQLRAADESEVRFFRC--TKCGKTWRE 101



>gi|51701953|sp|Q6FS48|RPB9_CANGA   DNA-directed RNA polymerase II subunit 9
          Length = 122

 Score = 44.7 bits (104), Expect = 5e-05
 Identities = 29/105 (27%), Positives = 39/105 (37%), Gaps = 6/105 (5%)

Query: 4   FCPGCGNGLIVEEGQRCHR--FSCNTCPYVHNITRKVTNRK--YPKLKEVDDVLGGAAAW 59
           FC  C N L   E +  +R  F C TC Y+      +  R      + E   V+    + 
Sbjct: 6   FCRDCNNMLYPREDKENNRLLFECRTCSYIEEAGSPLVYRHELITNIGETAGVVQDIGSD 65

Query: 60  ENVDSTAESCPKCEHPRAYFMQLQTRSADEPMTTFYKCCNAQCGH 104
             +  +   CPKC      F Q Q R  D  M  F+ C    C H
Sbjct: 66  PTLPRSDRECPKCHSRENVFFQSQQRRKDTSMVLFFVC--LACSH 108



>gi|417695|sp|P32529|RPA9_YEAST   DNA-directed RNA polymerase I 13.7 kDa polypeptide (A12.2)
          Length = 125

 Score = 42.4 bits (98), Expect = 3e-04
 Identities = 32/119 (26%), Positives = 49/119 (41%), Gaps = 16/119 (13%)

Query: 2   LLFCPGCGNGLIVEEGQRCHRFSCNTCPYVHNITRKVTNRKYPKLKEVDDVLGGAAAWEN 61
           L+FC  CG+ L            C+ C  ++  ++  +N K       D       A ++
Sbjct: 7   LIFCLDCGDLLENPNAVLGSNVECSQCKAIYPKSQ-FSNLKVVTTTADDAFPSSLRAKKS 65

Query: 62  VDSTA-------------ESCPKCEHPRAYFMQLQTRSADEPMTTFYKCCNAQCGHRWR 107
           V  T+             E CP+C +    +  LQ RSADE  T FY C    CG+++R
Sbjct: 66  VVKTSLKKNELKDGATIKEKCPQCGNEEMNYHTLQLRSADEGATVFYTC--TSCGYKFR 122



>gi|51701975|sp|Q755B3|RPB9_ASHGO   DNA-directed RNA polymerase II subunit 9
          Length = 122

 Score = 41.2 bits (95), Expect = 6e-04
 Identities = 28/105 (26%), Positives = 37/105 (35%), Gaps = 6/105 (5%)

Query: 4   FCPGCGNGLIVEEGQRCHR--FSCNTCPYVHNITRKVTNRK--YPKLKEVDDVLGGAAAW 59
           FC  C N L   E +   R  F C TC Y       +  R      + E   V+    + 
Sbjct: 6   FCRDCNNMLYPREDKEEQRLLFECRTCTYAEEAGTPLVYRHELITNIGETAGVVQDIGSD 65

Query: 60  ENVDSTAESCPKCEHPRAYFMQLQTRSADEPMTTFYKCCNAQCGH 104
             +  +   CP+C      F Q Q R  D  M  F+ C    C H
Sbjct: 66  PTLPRSDRECPRCHSHDNVFFQSQQRRRDTSMVLFFVCLG--CSH 108



>gi|15214253|sp|O74635|RPB9_SCHPO   DNA-directed RNA polymerase II subunit 9 (DNA-directed RNA
           polymerase II 13.2 kDa polypeptide)
          Length = 113

 Score = 40.4 bits (93), Expect = 0.001
 Identities = 28/109 (25%), Positives = 42/109 (38%), Gaps = 6/109 (5%)

Query: 4   FCPGCGNGLIVEEGQ--RCHRFSCNTCPYVHNITRKVTNRKYPKLKEVDD--VLGGAAAW 59
           +C  C N L   E +  R  R +C  C Y          R   +   V++  V   A+  
Sbjct: 6   YCIECNNMLYPREDKVDRVLRLACRNCDYSEIAATSKVYRHELQSSNVENTTVSHDASTD 65

Query: 60  ENVDSTAESCPKCEHPRAYFMQLQTRSADEPMTTFYKCCNAQCGHRWRD 108
             +  + + CP+C    A F Q  +R  D  MT  Y C    CG  + +
Sbjct: 66  PTLPRSDKECPRCHQHEAVFYQTHSRRGDTMMTLIYVC--VHCGFAFEE 112



>gi|135659|sp|P27948|TFS2_ASFB7   Transcription factor S-II-related protein
          Length = 243

 Score = 37.4 bits (85), Expect = 0.008
 Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 2/38 (5%)

Query: 69  CPKCEHPRAYFMQLQTRSADEPMTTFYKCCNAQCGHRW 106
           CP C+     + ++QTR+ DEP T F  C   +CGH +
Sbjct: 206 CPNCKQRMCTYREVQTRALDEPSTIFCTC--KKCGHEF 241



>gi|51702023|sp|Q8SQU1|RPB9_ENCCU   DNA-directed RNA polymerase II subunit 9
          Length = 108

 Score = 36.6 bits (83), Expect = 0.014
 Identities = 23/105 (21%), Positives = 37/105 (35%), Gaps = 4/105 (3%)

Query: 4   FCPGCGNGLIVEEGQRCHRFSCNTCPYVHNIT--RKVTNRKYPKLKEVDDVLGGAAAWEN 61
           FC  C N L  +E       +C  C ++      R       PK   ++           
Sbjct: 5   FCKECNNLLYPKEDDNTLFLACKNCEHIQEAKSHRLYVKNFRPKHASIELYARDLVQDPT 64

Query: 62  VDSTAESCPKCEHPRAYFMQLQTRSADEPMTTFYKCCNAQCGHRW 106
           + S   +C  C   +  + Q +    D  ++ FY CC  +C H W
Sbjct: 65  LPSVKINCGNCGFNKGLYFQPRGGEEDVALSIFYLCC--RCYHLW 107



>gi|54036247|sp|Q9WVS6|PRKN_MOUSE   Parkin (Ubiquitin E3 ligase PRKN)
          Length = 464

 Score = 33.9 bits (76), Expect = 0.094
 Identities = 31/125 (24%), Positives = 41/125 (32%), Gaps = 30/125 (24%)

Query: 6   PGCGNGLIVEEGQR-----------CHRFSCNTCPYVHN--------ITRKVTNRKYPKL 46
           PGCG GL+ E+GQR           C    C  C   ++             T++ Y   
Sbjct: 334 PGCGAGLLPEQGQRKVTCEGGNGLGCGFVFCRDCKEAYHEGDCDSLLEPSGATSQAY--- 390

Query: 47  KEVDDVLGGAAAW-----ENVDSTAESCPKCEHPRAYFMQLQTRSADEPMTTFYKCCNAQ 101
             VD      A W     E +  T + CP+C  P             +P      C N  
Sbjct: 391 -RVDKRAAEQARWEEASKETIKKTTKPCPRCNVPIEKNGGCMHMKCPQPQCKLEWCWN-- 447

Query: 102 CGHRW 106
           CG  W
Sbjct: 448 CGCEW 452



>gi|54036214|sp|Q9JK66|PRKN_RAT   Parkin (Ubiquitin E3 ligase PRKN)
          Length = 465

 Score = 33.5 bits (75), Expect = 0.12
 Identities = 30/125 (24%), Positives = 41/125 (32%), Gaps = 30/125 (24%)

Query: 6   PGCGNGLIVEEGQR-----------CHRFSCNTCPYVHN--------ITRKVTNRKYPKL 46
           PGCG GL+ E+GQ+           C    C  C   ++             T++ Y   
Sbjct: 335 PGCGAGLLPEQGQKKVTCEGGNGLGCGFVFCRDCKEAYHEGECDSMFEASGATSQAY--- 391

Query: 47  KEVDDVLGGAAAW-----ENVDSTAESCPKCEHPRAYFMQLQTRSADEPMTTFYKCCNAQ 101
             VD      A W     E +  T + CP+C  P             +P      C N  
Sbjct: 392 -RVDQRAAEQARWEEASKETIKKTTKPCPRCNVPIEKNGGCMHMKCPQPQCKLEWCWN-- 448

Query: 102 CGHRW 106
           CG  W
Sbjct: 449 CGCEW 453



>gi|27734543|sp|Q9AGG3|RUBY_PORGI   Rubrerythrin (RR)
          Length = 200

 Score = 31.6 bits (70), Expect = 0.46
 Identities = 22/76 (28%), Positives = 30/76 (39%), Gaps = 33/76 (43%)

Query: 14  VEEGQRCHR-----FSCNTCPYVHNITRKVTNRKYPKLKEVDDVLGGAAAWENVDSTAES 68
           VE+G    R     + C  C YV      +T++K PKL                      
Sbjct: 151 VEDGSVFERTEEIAWQCRNCGYV------ITSKKAPKL---------------------- 182

Query: 69  CPKCEHPRAYFMQLQT 84
           CP C HP+AYF  ++T
Sbjct: 183 CPACAHPQAYFEPMKT 198



>gi|54036217|sp|O60260|PRKN_HUMAN   Parkin (Ubiquitin E3 ligase PRKN) (Parkinson juvenile disease
           protein 2) (Parkinson disease protein 2)
          Length = 465

 Score = 30.8 bits (68), Expect = 0.79
 Identities = 30/125 (24%), Positives = 39/125 (31%), Gaps = 30/125 (24%)

Query: 6   PGCGNGLIVEEGQR-----------CHRFSCNTCPYVHN--------ITRKVTNRKYPKL 46
           PGCG GL+ E  QR           C    C  C   ++             T + Y   
Sbjct: 335 PGCGAGLLPEPDQRKVTCEGGNGLGCGFAFCRECKEAYHEGECSAVFEASGTTTQAY--- 391

Query: 47  KEVDDVLGGAAAW-----ENVDSTAESCPKCEHPRAYFMQLQTRSADEPMTTFYKCCNAQ 101
             VD+     A W     E +  T + CP+C  P             +P      C N  
Sbjct: 392 -RVDERAAEQARWEAASKETIKKTTKPCPRCHVPVEKNGGCMHMKCPQPQCRLEWCWN-- 448

Query: 102 CGHRW 106
           CG  W
Sbjct: 449 CGCEW 453



>gi|56404700|sp|O57187|RPO5_VACCA   DNA-directed RNA polymerase 30 kDa polypeptide
          Length = 259

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 12/29 (41%), Positives = 16/29 (55%)

Query: 69  CPKCEHPRAYFMQLQTRSADEPMTTFYKC 97
           CP C+      M +QTR+ADEP    + C
Sbjct: 159 CPNCKSRNTTPMMIQTRAADEPPLVRHAC 187



>gi|133388|sp|P21603|RPO5_VACCV   DNA-directed RNA polymerase 30 kDa polypeptide
          Length = 259

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 12/29 (41%), Positives = 16/29 (55%)

Query: 69  CPKCEHPRAYFMQLQTRSADEPMTTFYKC 97
           CP C+      M +QTR+ADEP    + C
Sbjct: 159 CPNCKSRNTTPMMIQTRAADEPPLVRHAC 187



>gi|464678|sp|P33796|RPO5_VARV   DNA-directed RNA polymerase 30 kDa polypeptide
          Length = 259

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 12/29 (41%), Positives = 16/29 (55%)

Query: 69  CPKCEHPRAYFMQLQTRSADEPMTTFYKC 97
           CP C+      M +QTR+ADEP    + C
Sbjct: 159 CPNCKSRNTTPMMIQTRAADEPPLVRHAC 187



>gi|133387|sp|P21082|RPO5_VACCC   DNA-directed RNA polymerase 30 kDa polypeptide
          Length = 259

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 12/29 (41%), Positives = 16/29 (55%)

Query: 69  CPKCEHPRAYFMQLQTRSADEPMTTFYKC 97
           CP C+      M +QTR+ADEP    + C
Sbjct: 159 CPNCKSRNTTPMMIQTRAADEPPLVRHAC 187



>gi|47117282|sp|Q97BH4|RS27A_THEVO   30S ribosomal protein S27ae
          Length = 55

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 12/27 (44%), Positives = 15/27 (55%), Gaps = 2/27 (7%)

Query: 4  FCPGCGNGLIVEEGQRCHRFSCNTCPY 30
          FCP CG G+ + E     RF+C  C Y
Sbjct: 20 FCPRCGPGVFLAE--HADRFTCGRCGY 44



>gi|47117320|sp|Q9HJ78|RS27A_THEAC   30S ribosomal protein S27ae
          Length = 55

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 12/27 (44%), Positives = 15/27 (55%), Gaps = 2/27 (7%)

Query: 4  FCPGCGNGLIVEEGQRCHRFSCNTCPY 30
          FCP CG G+ + E     R+SC  C Y
Sbjct: 20 FCPRCGPGVFLAE--HADRYSCGRCGY 44



>gi|30915970|sp|Q50925|HAO_NITEU   Hydroxylamine oxidoreductase precursor (HAO)
          Length = 570

 Score = 28.9 bits (63), Expect = 3.0
 Identities = 14/47 (29%), Positives = 22/47 (46%)

Query: 30  YVHNITRKVTNRKYPKLKEVDDVLGGAAAWENVDSTAESCPKCEHPR 76
           Y HNITRK     YP +  + + +    +   +DS   +C +C   R
Sbjct: 345 YTHNITRKTRWANYPFVPGIAENITSDWSEARLDSWVLTCTQCHSER 391



>gi|7388044|sp|O29152|RS27A_ARCFU   30S ribosomal protein S27ae
          Length = 55

 Score = 28.9 bits (63), Expect = 3.0
 Identities = 12/27 (44%), Positives = 15/27 (55%), Gaps = 2/27 (7%)

Query: 4  FCPGCGNGLIVEEGQRCHRFSCNTCPY 30
          FCP CG G+ + E +   R SC  C Y
Sbjct: 25 FCPRCGEGVFLAEHK--DRLSCGKCGY 49



>gi|47606184|sp|Q8JHW2|TSP3_BRARE   Thrombospondin-3 precursor (Thbs3)
          Length = 962

 Score = 28.5 bits (62), Expect = 3.9
 Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 5/52 (9%)

Query: 24  SCNTCPYVHNITRKVTNRKYPKLKEVDDVLGGAAAWENVDSTAESCPKCEHP 75
           +C+ CP V NI +K T+         DD+ G     + + +  ++CPK  +P
Sbjct: 540 ACDNCPTVPNIDQKDTDSNGEGDACDDDIDG-----DGIQNVLDNCPKVPNP 586



>gi|2500684|sp|Q58144|RUBY_METJA   Putative rubrerythrin
          Length = 204

 Score = 28.5 bits (62), Expect = 3.9
 Identities = 9/13 (69%), Positives = 9/13 (69%)

Query: 67  ESCPKCEHPRAYF 79
           E CP C HPR YF
Sbjct: 185 EKCPSCSHPRKYF 197



>gi|34395819|sp|Q97Z83|PRIS_SULSO   Probable DNA primase small subunit
          Length = 330

 Score = 28.5 bits (62), Expect = 3.9
 Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 4/50 (8%)

Query: 4   FCPGCGNGLIVEEGQRCHRFSCNTCPYVHNITRKVTNRKYPKLKEVDDVL 53
           FCP CGN ++ E   +C R +  T  YV  +T +   R   + + + ++L
Sbjct: 115 FCPVCGNAVVSE---KCERDNVETLEYV-EMTSECIKRGLEQTRNLVEIL 160



>gi|48428570|sp|O75443|TECA_HUMAN   Alpha-tectorin precursor
          Length = 2155

 Score = 28.5 bits (62), Expect = 3.9
 Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 11/53 (20%)

Query: 54  GGAAAWENVDSTAESC---PKCEHPRAYFMQLQTRSADEPMTTFYKCCNAQCG 103
           GG   + N +++ E C    KC    A F+        E  TTF + CN +CG
Sbjct: 846 GGLCGFYNANASDEFCLPNGKCTDNLAVFL--------ESWTTFEEICNGECG 890



>gi|2822109|sp|P14730|WDNM_RAT   WDNM1 protein precursor
          Length = 74

 Score = 28.5 bits (62), Expect = 3.9
 Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 1/36 (2%)

Query: 69  CPKCEHPRAYFMQLQTRSADEPMTTFYKCCNAQCGH 104
           CPK   PR+    ++  S D+      KCC+  CGH
Sbjct: 33  CPK-NPPRSIGTCVELCSGDQSCPNIQKCCSNGCGH 67



>gi|48428565|sp|O08523|TECA_MOUSE   Alpha-tectorin precursor
          Length = 2155

 Score = 28.1 bits (61), Expect = 5.1
 Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 11/53 (20%)

Query: 54  GGAAAWENVDSTAESC---PKCEHPRAYFMQLQTRSADEPMTTFYKCCNAQCG 103
           GG   + N +++ E C    KC    A F+        E  TTF + CN +CG
Sbjct: 846 GGLCGFFNANASDEFCLPNGKCTDNLAVFL--------ESWTTFEEICNGECG 890



>gi|14423964|sp|Q59046|TOP1_METJA   DNA topoisomerase I (Omega-protein) (Relaxing enzyme) (Untwisting
           enzyme) (Swivelase)
          Length = 761

 Score = 28.1 bits (61), Expect = 5.1
 Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 3/44 (6%)

Query: 5   CPGCGNGLIVEEGQRCHRFSCNT---CPYVHNITRKVTNRKYPK 45
           CP CG  LI+++G     + C+    C Y   I +K    K PK
Sbjct: 680 CPKCGAKLILKKGVYGAFYGCSNYPKCKYTEPINKKEVVGKCPK 723



>gi|1176857|sp|P46494|Y656A_HAEIN   Hypothetical protein HI0656.1
          Length = 178

 Score = 27.7 bits (60), Expect = 6.7
 Identities = 16/69 (23%), Positives = 30/69 (43%), Gaps = 17/69 (24%)

Query: 4  FCPGCGNGLIVEEGQRCHRFSCNTCPYVHNITRKVTNRKYPKLKEVDDVLGGAAAWENVD 63
          +CP CG  L +++G++     C+  P   +  R +   ++  LK +D++           
Sbjct: 14 YCPQCGAPLQIKQGKKGLFLGCSAYPEC-DYLRPLQRSEHKVLKTLDEI----------- 61

Query: 64 STAESCPKC 72
               CPKC
Sbjct: 62 -----CPKC 65



>gi|51702194|sp|Q9JLM4|Z261_MOUSE   Zinc finger protein 261 (DXHXS6673E protein)
          Length = 1370

 Score = 27.7 bits (60), Expect = 6.7
 Identities = 13/34 (38%), Positives = 17/34 (50%)

Query: 42  KYPKLKEVDDVLGGAAAWENVDSTAESCPKCEHP 75
           K P   EVD    G  AW++ + T E  P C+ P
Sbjct: 89  KAPSPPEVDHGPEGTLAWDSGEQTLEPGPGCQTP 122



>gi|2497126|sp|Q05123|ARP9_YEAST   Actin-like protein ARP9 (Chromatin structure remodeling complex
           protein ARP9) (SWI/SNF complex component ARP9)
          Length = 467

 Score = 27.7 bits (60), Expect = 6.7
 Identities = 10/31 (32%), Positives = 18/31 (58%)

Query: 32  HNITRKVTNRKYPKLKEVDDVLGGAAAWENV 62
           +N+ + ++NR    L  +DD+    A WEN+
Sbjct: 303 NNLIKNISNRVGLTLDNIDDINKAKAVWENI 333



>gi|12643811|sp|Q9NJ15|PCSK5_BRACL   Proprotein convertase subtilisin/kexin type 5 precursor (Proprotein
            convertase PC6-like) (aPC6)
          Length = 1696

 Score = 27.7 bits (60), Expect = 6.7
 Identities = 23/86 (26%), Positives = 31/86 (36%), Gaps = 13/86 (15%)

Query: 23   FSCNTCPYVHNITRKVTNRKYPKLKEVDDVLGGAAAWENVD--------STAESCPKCEH 74
            ++C +CPY   +   V    YP  +E +  +      E  D        STA  C  CE 
Sbjct: 1504 YNCLSCPYGSKLGEGVC---YPMCEEHEYYVEKTQICEECDNSCKTCRGSTAHDCLSCEA 1560

Query: 75   PRAY--FMQLQTRSADEPMTTFYKCC 98
            P  Y     L T   +E       CC
Sbjct: 1561 PYGYHAMKHLCTACCEEGSPENEYCC 1586



>gi|20141761|sp|P51591|RUBY_CLOPE   Rubrerythrin (RR)
          Length = 195

 Score = 27.7 bits (60), Expect = 6.7
 Identities = 10/21 (47%), Positives = 14/21 (66%), Gaps = 1/21 (4%)

Query: 59  WENVDSTAESCPKCEHPRAYF 79
           WE  ++  + CP C HP+AYF
Sbjct: 169 WEGAEAPLK-CPACLHPQAYF 188



>gi|6225190|sp|Q91082|COLI_LEPOS   Corticotropin-lipotropin precursor (Pro-opiomelanocortin) (POMC)
           [Contains: NPP; Gamma-melanotropin-like segment;
           Corticotropin (Adrenocorticotropic hormone) (ACTH);
           Melanotropin alpha (Alpha-MSH); Corticotropin-like
           intermediary peptide (CLIP); Melanotropin beta
           (Beta-MSH); Beta-endorphin; Met-enkephalin]
          Length = 259

 Score = 27.7 bits (60), Expect = 6.7
 Identities = 19/73 (26%), Positives = 31/73 (42%), Gaps = 10/73 (13%)

Query: 43  YPKLKEVDDVLGGAAAWENVDSTAESCPKCEHPR----------AYFMQLQTRSADEPMT 92
           YP L+EV++ LGG     N+    +   K  H R            FM+     + +P+ 
Sbjct: 183 YPLLEEVEEELGGENEVLNLQEKKDGSYKMHHFRWSRPPKDKRYGGFMKSWDERSQKPLL 242

Query: 93  TFYKCCNAQCGHR 105
           T +K    + GH+
Sbjct: 243 TLFKNVIIKDGHQ 255



>gi|55583950|sp|Q8LE43|DOF21_ARATH   Dof zinc finger protein DOF2.1 (AtDOF2.1)
          Length = 288

 Score = 27.3 bits (59), Expect = 8.8
 Identities = 13/52 (25%), Positives = 24/52 (46%), Gaps = 1/52 (1%)

Query: 47 KEVDDVLGGAAAWENVDSTAESCPKCEHPRAYFMQLQTRSADEPMTTFYKCC 98
          K++++ +    +   +   A++CP+CE P   F      S  +P   F K C
Sbjct: 28 KKMEEEMKKKVSRGELGGEAQNCPRCESPNTKFCYYNNYSLSQP-RYFCKSC 78



>gi|14423978|sp|Q9PLZ2|TOP1_CAMJE   DNA topoisomerase I (Omega-protein) (Relaxing enzyme) (Untwisting
           enzyme) (Swivelase)
          Length = 700

 Score = 27.3 bits (59), Expect = 8.8
 Identities = 17/72 (23%), Positives = 26/72 (36%), Gaps = 14/72 (19%)

Query: 5   CPGCGNGLIVEEGQRCHRFSC---NTCPYVHNITRKVTNRKYPKLKEVDDVLGGAAAWEN 61
           CP CG  L + +G+     +C     C Y  N+  +  N                AA   
Sbjct: 573 CPDCGGELAIRKGRFGEFVACLNFPKCKYSRNLKSESKNES-----------ENTAAKAK 621

Query: 62  VDSTAESCPKCE 73
            + T  +CP C+
Sbjct: 622 ANGTGITCPSCQ 633



>gi|12229625|sp|O70467|ANM3_RAT   Protein arginine N-methyltransferase 3 (Heterogeneous nuclear
          ribonucleoprotein methyltransferase-like protein 3)
          Length = 528

 Score = 27.3 bits (59), Expect = 8.8
 Identities = 19/54 (35%), Positives = 25/54 (46%), Gaps = 4/54 (7%)

Query: 44 PKLKEVDDVLGGAAAWENVDSTAESCPKCEHPRAYFMQLQTRSADEPMTTFYKC 97
          P+  E+ D  G  A WE+ D+ AE     +H    F     RSA+E   TF  C
Sbjct: 16 PEPLELSDS-GDDAGWEDEDADAEPAQGRQHTPCLFCDRLFRSAEE---TFSHC 65






  Database: Non-redundant SwissProt sequences
    Posted date:  Mar 15, 2005 10:11 AM
  Number of letters in database: 60,490,055
  Number of sequences in database:  164,271
  
Lambda     K      H
   0.324    0.137    0.476 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,085,301
Number of Sequences: 164271
Number of extensions: 217449
Number of successful extensions: 682
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 651
Number of HSP's gapped (non-prelim): 31
length of query: 108
length of database: 60,490,055
effective HSP length: 77
effective length of query: 31
effective length of database: 47,841,188
effective search space: 1483076828
effective search space used: 1483076828
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 59 (27.3 bits)