BLASTP 2.2.10 [Oct-19-2004]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. RID: 1111069221-17602-92877994567.BLASTQ2 Query= FGENESH: 28 8 exon (s) 468052 - 495628 293 aa, chain + (293 letters) Database: Non-redundant SwissProt sequences 164,271 sequences; 60,490,055 total letters If you have any problems or questions with the results of this search please refer to the BLAST FAQs Taxonomy reports
RID: 1111069221-17602-92877994567.BLASTQ2
Query= FGENESH: 28 8 exon (s) 468052 - 495628 293 aa, chain + (293 letters)
Database: Non-redundant SwissProt sequences 164,271 sequences; 60,490,055 total letters
If you have any problems or questions with the results of this search please refer to the BLAST FAQs
Taxonomy reports
Score E Sequences producing significant alignments: (bits) Value gi|14424221|sp|O75154|EFER_HUMAN Rab11 family-interacting p... 328 1e-89 gi|1171755|sp|P46076|NPII_ASPOR Neutral protease II precurs... 33 0.84 gi|55583951|sp|Q8MR62|VIAF_DROME Viral IAP-associated facto... 33 1.1 gi|23822294|sp|Q8PJB1|UVRB_XANAC UvrABC system protein B (U... 32 2.5 gi|25453060|sp|Q9ESN9|JIP3_MOUSE C-jun-amino-terminal kinas... 31 4.2 gi|60389817|sp|Q9KLQ5|FBPC_VIBCH Ferric cations import ATP-... 31 4.2 gi|1708232|sp|P54961|HMC1_BLAGE Hydroxymethylglutaryl-CoA s... 30 5.5 gi|13959710|sp|P12613|TCPA_DROME T-complex protein 1, alpha... 30 7.1 gi|13431563|sp|O75146|HIPR_HUMAN Huntingtin interacting pro... 30 9.3 gi|22095453|sp|Q97HJ4|ACPH_CLOAB Acyl carrier protein homol... 30 9.3 gi|17375622|sp|Q9EQ28|DPOD3_MOUSE DNA polymerase delta subu... 30 9.3 gi|25453064|sp|Q9UPT6|JIP3_HUMAN C-jun-amino-terminal kinas... 30 9.3 Alignments
Score E Sequences producing significant alignments: (bits) Value gi|14424221|sp|O75154|EFER_HUMAN Rab11 family-interacting p... 328 1e-89 gi|1171755|sp|P46076|NPII_ASPOR Neutral protease II precurs... 33 0.84 gi|55583951|sp|Q8MR62|VIAF_DROME Viral IAP-associated facto... 33 1.1 gi|23822294|sp|Q8PJB1|UVRB_XANAC UvrABC system protein B (U... 32 2.5 gi|25453060|sp|Q9ESN9|JIP3_MOUSE C-jun-amino-terminal kinas... 31 4.2 gi|60389817|sp|Q9KLQ5|FBPC_VIBCH Ferric cations import ATP-... 31 4.2 gi|1708232|sp|P54961|HMC1_BLAGE Hydroxymethylglutaryl-CoA s... 30 5.5 gi|13959710|sp|P12613|TCPA_DROME T-complex protein 1, alpha... 30 7.1 gi|13431563|sp|O75146|HIPR_HUMAN Huntingtin interacting pro... 30 9.3 gi|22095453|sp|Q97HJ4|ACPH_CLOAB Acyl carrier protein homol... 30 9.3 gi|17375622|sp|Q9EQ28|DPOD3_MOUSE DNA polymerase delta subu... 30 9.3 gi|25453064|sp|Q9UPT6|JIP3_HUMAN C-jun-amino-terminal kinas... 30 9.3
>gi|14424221|sp|O75154|EFER_HUMAN Rab11 family-interacting protein 3 (Rab11-FIP3) (EF hands-containing Rab-interacting protein) (Eferin) Length = 756 Score = 328 bits (841), Expect = 1e-89 Identities = 183/267 (68%), Positives = 184/267 (68%), Gaps = 68/267 (25%) Query: 27 QANEVTDSAYMGSESTYSECETFTDEDTSTLVHPELQPEGDADSAGGSAVPSECLDAMEE 86 +ANEVTDSAYMGSESTYSECETFTDEDTSTLVHPELQPEGDADSAGGSAVPSECLDAMEE Sbjct: 301 EANEVTDSAYMGSESTYSECETFTDEDTSTLVHPELQPEGDADSAGGSAVPSECLDAMEE 360 Query: 87 PDXXXXXXXXXXXXXXXQSVITVIGGEEHFEDYGEGSEAELSPETLCNGQLGCSDPAFLT 146 PD QSVITVIGGEEHFEDYGEGSEAELSPETLCNGQLGCSDPAFLT Sbjct: 361 PDHGALLLLPGRPHPHGQSVITVIGGEEHFEDYGEGSEAELSPETLCNGQLGCSDPAFLT 420 Query: 147 PSTDPLAAKLHSILTDEAFEFYCSQCHKQINRLEDLSARLSDLEMNSPTKRLSSKKVARY 206 P SPTKRLSSKKVARY Sbjct: 421 P---------------------------------------------SPTKRLSSKKVARY 435 Query: 207 LHQSGALTMEALEDPSPELMEGPEEDIADKVSDSHLGPSASGCLTLKPGLIAKVVFLERR 266 LHQSGALTMEALEDPSPELMEGPEEDIAD KVVFLERR Sbjct: 436 LHQSGALTMEALEDPSPELMEGPEEDIAD-----------------------KVVFLERR 472 Query: 267 VLELEKDTAATGEQHSRLRQENLQLVH 293 VLELEKDTAATGEQHSRLRQENLQLVH Sbjct: 473 VLELEKDTAATGEQHSRLRQENLQLVH 499
>gi|1171755|sp|P46076|NPII_ASPOR Neutral protease II precursor (Deuterolysin) (NPII) Length = 352 Score = 33.1 bits (74), Expect = 0.84 Identities = 21/73 (28%), Positives = 33/73 (45%), Gaps = 1/73 (1%) Query: 11 GSWQLGLALHVSSSEAQANEVTDSAYMGSESTYSECETFTDEDTSTLVHPELQPEG-DAD 69 G + L +S++ AN+ ++A G ES + E TD+ T T V L+ +A Sbjct: 183 GDAESSLTTALSNAAKLANQAAEAAESGDESKFEEYFKTTDQQTRTTVAERLRAVAKEAG 242 Query: 70 SAGGSAVPSECLD 82 S G + C D Sbjct: 243 STSGGSTTYHCND 255
>gi|55583951|sp|Q8MR62|VIAF_DROME Viral IAP-associated factor 1 homolog Length = 240 Score = 32.7 bits (73), Expect = 1.1 Identities = 15/43 (34%), Positives = 27/43 (62%) Query: 197 RLSSKKVARYLHQSGALTMEALEDPSPELMEGPEEDIADKVSD 239 +L+++++ L Q+GA+ E EDP P++ + D+ DK SD Sbjct: 196 KLTAEELEFMLGQAGAVPTEITEDPRPQIRDKMLADLEDKSSD 238
>gi|23822294|sp|Q8PJB1|UVRB_XANAC UvrABC system protein B (UvrB protein) (Excinuclease ABC subunit B) Length = 673 Score = 31.6 bits (70), Expect = 2.5 Identities = 25/86 (29%), Positives = 41/86 (47%), Gaps = 9/86 (10%) Query: 195 TKRLSSKKVARYLHQSGALTMEALEDPSPELMEGPEEDIADKVS------DSHLGPSASG 248 T R K+V L +T +++E P ++MEG +D A+K S H+ Sbjct: 568 TDRRREKQVEYNLEHG--ITPKSVERPIADIMEGARDDAAEKKSGKGRSKSRHVAEETPD 625 Query: 249 CLTLKPGLIA-KVVFLERRVLELEKD 273 +KP IA K+ LE+++ + KD Sbjct: 626 YRAMKPAEIAGKLKSLEQKMYQHAKD 651
>gi|25453060|sp|Q9ESN9|JIP3_MOUSE C-jun-amino-terminal kinase interacting protein 3 (JNK-interacting protein 3) (JIP-3) (JNK MAP kinase scaffold protein 3) (Mitogen-activated protein kinase 8-interacting protein 3) (JNK/SAPK-associated protein 1) (JSAP1) (Sunday driver 2) Length = 1337 Score = 30.8 bits (68), Expect = 4.2 Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 1/52 (1%) Query: 32 TDSAYMGSESTYSECETFTDEDTSTLVHPELQPEGDADSAGGSAVPSECLDA 83 TD A S ST E + E T+V P+++P G+ + SA P+ L A Sbjct: 926 TDPAPTPSSSTQPASENGS-ESNGTIVQPQVEPSGELSTTTSSAAPTMWLGA 976
>gi|60389817|sp|Q9KLQ5|FBPC_VIBCH Ferric cations import ATP-binding protein fbpC Length = 351 Score = 30.8 bits (68), Expect = 4.2 Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 5/34 (14%) Query: 11 GSWQLG-----LALHVSSSEAQANEVTDSAYMGS 39 G +Q+G + LH SE+QA ++ SAYMGS Sbjct: 272 GEYQIGVRPEAITLHTQGSESQACQILKSAYMGS 305
>gi|1708232|sp|P54961|HMC1_BLAGE Hydroxymethylglutaryl-CoA synthase 1 (HMG-CoA synthase 1) (3-hydroxy-3-methylglutaryl coenzyme A synthase 1) Length = 453 Score = 30.4 bits (67), Expect = 5.5 Identities = 19/66 (28%), Positives = 34/66 (51%), Gaps = 2/66 (3%) Query: 141 DPAFLTPSTD-PLAAKLHSILTDEAFEFYCSQCHKQINRLEDLSARLSDLEMNSPTKRLS 199 D + L P+ D L+ + + D ++ YCS+ KQ+ D+ RL + ++P +L Sbjct: 195 DLSSLYPTVDGKLSIQCYLSALDHCYQLYCSKIQKQLGEKFDIE-RLDAVLFHAPYCKLV 253 Query: 200 SKKVAR 205 K +AR Sbjct: 254 QKSLAR 259
>gi|13959710|sp|P12613|TCPA_DROME T-complex protein 1, alpha subunit (TCP-1-alpha) (CCT-alpha) Length = 557 Score = 30.0 bits (66), Expect = 7.1 Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 8/71 (11%) Query: 107 ITVIGGEEHFEDYGEGSEAELSPETLCNGQLGCSDPAFLTPSTDPLAAKLHSILTDEAFE 166 +T + GEE F+ G AE++ E +C+ +L L T AA SI+ + Sbjct: 334 LTNMDGEESFDASMVGEAAEVAQERICDDEL------ILIKGTKARAAA--SIILRGPND 385 Query: 167 FYCSQCHKQIN 177 FYC + + ++ Sbjct: 386 FYCDEMERSVH 396
>gi|13431563|sp|O75146|HIPR_HUMAN Huntingtin interacting protein 1 related (Hip1-related) (Hip 12) Length = 1068 Score = 29.6 bits (65), Expect = 9.3 Identities = 30/122 (24%), Positives = 47/122 (38%), Gaps = 18/122 (14%) Query: 141 DPAFLTPSTDPLAAKLHSILTDEAFEFYCSQCHKQINRLEDLSARLSDLEM--------- 191 D + L T L KLHS L + + + + H+Q + L + R SD+ Sbjct: 222 DCSHLYHYTVKLLFKLHSCLPADTLQGHRDRFHEQFHSLRNFFRRASDMLYFKRLIQIPR 281 Query: 192 --NSPTKRLSSKKVARYLHQSGALTMEALEDPSP----ELMEGP---EEDIADKVSDSHL 242 P L + +A ++ + EA ED P E+ GP E + + D Sbjct: 282 LPEGPPNFLRASALAEHIKPVVVIPEEAPEDEEPENLIEISTGPPAGEPVVVADLFDQTF 341 Query: 243 GP 244 GP Sbjct: 342 GP 343
>gi|22095453|sp|Q97HJ4|ACPH_CLOAB Acyl carrier protein homolog (ACP) Length = 103 Score = 29.6 bits (65), Expect = 9.3 Identities = 20/91 (21%), Positives = 45/91 (49%), Gaps = 5/91 (5%) Query: 152 LAAKLHSILTDEAFEFYCSQCHKQINRLEDLSARLSDLEMNSPTKRLSSKKVARYLHQSG 211 L +++ + D ++F+ +C IN L D ++ + DL+ +S L ++ L + Sbjct: 4 LTSEIKKEIRDIVYDFFSEECEVDINELNDNTSVVDDLDGDS----LMLIELVDILKKKY 59 Query: 212 ALTMEALEDPSPELMEGPEEDIADKVSDSHL 242 +L ++ L+ L++ P E + V ++L Sbjct: 60 SLNIQ-LQSIGKYLLKNPAETLEKVVQTTYL 89
>gi|17375622|sp|Q9EQ28|DPOD3_MOUSE DNA polymerase delta subunit 3 (DNA polymerase delta subunit p66) Length = 462 Score = 29.6 bits (65), Expect = 9.3 Identities = 26/85 (30%), Positives = 39/85 (45%), Gaps = 14/85 (16%) Query: 4 RPPASAPGSWQLGLALHVSSSEAQANEVTDSAYMGSES-------------TYSECETFT 50 R PA +P S + + ++SEAQA+E+T + + S S+ T T Sbjct: 143 RAPAESPSSRKYEQSNLQAASEAQASELTTNGHGPPASKQASQQPKGIMGMLISKAATKT 202 Query: 51 DEDTSTLVHPELQPEGDADSAGGSA 75 +DT+ PE + A SAGG A Sbjct: 203 -QDTNKETKPEAREVTSASSAGGKA 226
>gi|25453064|sp|Q9UPT6|JIP3_HUMAN C-jun-amino-terminal kinase interacting protein 3 (JNK-interacting protein 3) (JIP-3) (JNK MAP kinase scaffold protein 3) (Mitogen-activated protein kinase 8-interacting protein 3) Length = 1334 Score = 29.6 bits (65), Expect = 9.3 Identities = 19/52 (36%), Positives = 24/52 (46%), Gaps = 1/52 (1%) Query: 32 TDSAYMGSESTYSECETFTDEDTSTLVHPELQPEGDADSAGGSAVPSECLDA 83 TD A S E + D+S+ PE +P GD AG SA P+ L A Sbjct: 923 TDPAPTPSSGPQPGSENGPEPDSSS-TRPEPEPSGDPTGAGSSAAPTMWLGA 973
Database: Non-redundant SwissProt sequences Posted date: Mar 15, 2005 10:11 AM Number of letters in database: 60,490,055 Number of sequences in database: 164,271 Lambda K H 0.309 0.127 0.361 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 6,287,822 Number of Sequences: 164271 Number of extensions: 252614 Number of successful extensions: 617 Number of sequences better than 10.0: 3 Number of HSP's better than 10.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 3 Number of HSP's that attempted gapping in prelim test: 614 Number of HSP's gapped (non-prelim): 5 length of query: 293 length of database: 60,490,055 effective HSP length: 109 effective length of query: 184 effective length of database: 42,584,516 effective search space: 7835550944 effective search space used: 7835550944 T: 11 A: 40 X1: 16 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.7 bits) S2: 65 (29.6 bits)
