BLASTP 2.2.10 [Oct-19-2004]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

RID: 1111064559-20570-159232686565.BLASTQ2

Query= hg16_dna_3|geneid_v1.2_predicted_protein_3|108_AA
         (107 letters)


Database: Non-redundant SwissProt sequences 
           164,271 sequences; 60,490,055 total letters

 
If you have any problems or questions with the results of this search 
please refer to the BLAST FAQs

Taxonomy reports

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|115565|sp|P07872|ACOX1_RAT  Acyl-coenzyme A oxidase 1, pe...    32   0.27  
gi|17367267|sp|Q9Z1N0|ACOX1_CAVPO  Acyl-coenzyme A oxidase 1...    31   0.61  
gi|51338830|sp|Q9R0H0|ACOX1_MOUSE  Acyl-coenzyme A oxidase 1...    31   0.80  
gi|17380467|sp|Q15067|ACOX1_HUMAN  Acyl-coenzyme A oxidase 1...    30   1.8   
gi|124735|sp|P18175|INVO_PIG  Involucrin                           29   2.3   
gi|38604952|sp|Q8ZGV2|DUSC_YERPE  tRNA-dihydrouridine syntha...    29   2.3   
gi|549632|sp|P36154|YK54_YEAST  Hypothetical 18.4 kDa protei...    28   5.2   
gi|27805438|sp|Q9DA57|CTG5_MOUSE  Protein c20orf165 homolog        28   6.7   
gi|29337005|sp|Q9UQE7|SMC3_HUMAN  Structural maintenance of ...    27   8.8   
gi|29336525|sp|P97690|SMC3_RAT  Structural maintenance of ch...    27   8.8   
gi|29336931|sp|Q9CW03|SMC3_MOUSE  Structural maintenance of ...    27   8.8   
gi|29336596|sp|O97594|SMC3_BOVIN  Structural maintenance of ...    27   8.8   


Alignments

>gi|115565|sp|P07872|ACOX1_RAT   Acyl-coenzyme A oxidase 1, peroxisomal (Palmitoyl-CoA oxidase)
           (AOX)
          Length = 661

 Score = 32.3 bits (72), Expect = 0.27
 Identities = 15/45 (33%), Positives = 27/45 (60%)

Query: 60  QHISWSYVWRTYHLTSAGEKLTEDRKKLRDYGIRNRDEVSFIKKL 104
           QH  ++++ R+     A +K     KK+R+YGI + +E+ + KKL
Sbjct: 47  QHEDYNFLTRSQRYEVAVKKSATMVKKMREYGISDPEEIMWFKKL 91



>gi|17367267|sp|Q9Z1N0|ACOX1_CAVPO   Acyl-coenzyme A oxidase 1, peroxisomal (Palmitoyl-CoA oxidase)
           (AOX)
          Length = 661

 Score = 31.2 bits (69), Expect = 0.61
 Identities = 16/59 (27%), Positives = 34/59 (57%)

Query: 46  QRYVQLKQEREGGIQHISWSYVWRTYHLTSAGEKLTEDRKKLRDYGIRNRDEVSFIKKL 104
           +R ++ K   +   QH + +++ R+    +A +K     KK+R++GI + DE+ + K+L
Sbjct: 33  RREIENKILSDPDFQHENHNFLTRSERYEAAIKKSAVMVKKMREFGIADPDEIMWFKRL 91



>gi|51338830|sp|Q9R0H0|ACOX1_MOUSE   Acyl-coenzyme A oxidase 1, peroxisomal (Palmitoyl-CoA oxidase)
           (AOX)
          Length = 661

 Score = 30.8 bits (68), Expect = 0.80
 Identities = 14/45 (31%), Positives = 27/45 (60%)

Query: 60  QHISWSYVWRTYHLTSAGEKLTEDRKKLRDYGIRNRDEVSFIKKL 104
           QH  ++++ R+     A +K     KK+R++GI + +E+ + KKL
Sbjct: 47  QHEDYNFLTRSQRYEVAVKKSATMVKKMREFGIADPEEIMWFKKL 91



>gi|17380467|sp|Q15067|ACOX1_HUMAN   Acyl-coenzyme A oxidase 1, peroxisomal (Palmitoyl-CoA oxidase)
           (AOX)
          Length = 660

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 15/45 (33%), Positives = 25/45 (55%)

Query: 60  QHISWSYVWRTYHLTSAGEKLTEDRKKLRDYGIRNRDEVSFIKKL 104
           QH   +++ R+     A  K     KK+R++GI + DE+ + KKL
Sbjct: 47  QHEDLNFLTRSQRYEVAVRKSAIMVKKMREFGIADPDEIMWFKKL 91



>gi|124735|sp|P18175|INVO_PIG   Involucrin
          Length = 347

 Score = 29.3 bits (64), Expect = 2.3
 Identities = 14/38 (36%), Positives = 19/38 (50%)

Query: 50  QLKQEREGGIQHISWSYVWRTYHLTSAGEKLTEDRKKL 87
           QL+QE++G  QH+      R  HL   GE     R+ L
Sbjct: 310 QLEQEKKGVYQHLDQELTKRDEHLEKKGEHCWSSRRSL 347



>gi|38604952|sp|Q8ZGV2|DUSC_YERPE   tRNA-dihydrouridine synthase C
          Length = 312

 Score = 29.3 bits (64), Expect = 2.3
 Identities = 11/33 (33%), Positives = 22/33 (66%)

Query: 39  LDLKKAIQRYVQLKQEREGGIQHISWSYVWRTY 71
           L++ K +Q+YVQL+++ + G+ H++    W  Y
Sbjct: 247 LEVVKLLQKYVQLEKQGDTGLYHVARIKQWLGY 279



>gi|549632|sp|P36154|YK54_YEAST   Hypothetical 18.4 kDa protein in SIS2-MTD1 intergenic region
          Length = 155

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 11/24 (45%), Positives = 15/24 (62%)

Query: 80  LTEDRKKLRDYGIRNRDEVSFIKK 103
           +  D+KKL +YGI N  E+S   K
Sbjct: 118 IENDKKKLFEYGIENETEISLFNK 141



>gi|27805438|sp|Q9DA57|CTG5_MOUSE   Protein c20orf165 homolog
          Length = 226

 Score = 27.7 bits (60), Expect = 6.7
 Identities = 12/46 (26%), Positives = 20/46 (43%)

Query: 40  DLKKAIQRYVQLKQEREGGIQHISWSYVWRTYHLTSAGEKLTEDRK 85
           DL +A Q ++    E EG ++ + W       H+ S    L   R+
Sbjct: 177 DLIRAAQAFMMAHPEPEGAVEGVQWEQAHAHAHMASGQMPLVRSRR 222



>gi|29337005|sp|Q9UQE7|SMC3_HUMAN   Structural maintenance of chromosome 3 (Chondroitin sulfate
           proteoglycan 6) (Chromosome-associated polypeptide)
           (hCAP) (Bamacan) (Basement membrane-associated
           chondroitin proteoglycan)
          Length = 1217

 Score = 27.3 bits (59), Expect = 8.8
 Identities = 17/65 (26%), Positives = 29/65 (44%)

Query: 41  LKKAIQRYVQLKQEREGGIQHISWSYVWRTYHLTSAGEKLTEDRKKLRDYGIRNRDEVSF 100
           LK   +R   L++E+E   Q+  W  + R    T   ++L E R KL +   +       
Sbjct: 193 LKYIEERLHTLEEEKEELAQYQKWDKMRRALEYTIYNQELNETRAKLDELSAKRETSGEK 252

Query: 101 IKKLR 105
            ++LR
Sbjct: 253 SRQLR 257



>gi|29336525|sp|P97690|SMC3_RAT   Structural maintenance of chromosome 3 (Chondroitin sulfate
           proteoglycan 6) (Chromosome segregation protein SmcD)
           (Bamacan) (Basement membrane-associated chondroitin
           proteoglycan)
          Length = 1191

 Score = 27.3 bits (59), Expect = 8.8
 Identities = 17/65 (26%), Positives = 29/65 (44%)

Query: 41  LKKAIQRYVQLKQEREGGIQHISWSYVWRTYHLTSAGEKLTEDRKKLRDYGIRNRDEVSF 100
           LK   +R   L++E+E   Q+  W  + R    T   ++L E R KL +   +       
Sbjct: 193 LKYIEERLHTLEEEKEELAQYQKWDKMRRALEYTIYNQELNETRAKLDELSAKRETSGEK 252

Query: 101 IKKLR 105
            ++LR
Sbjct: 253 SRQLR 257



>gi|29336931|sp|Q9CW03|SMC3_MOUSE   Structural maintenance of chromosome 3 (Chondroitin sulfate
           proteoglycan 6) (Chromosome segregation protein SmcD)
           (Bamacan) (Basement membrane-associated chondroitin
           proteoglycan) (Mad member-interacting protein 1)
          Length = 1217

 Score = 27.3 bits (59), Expect = 8.8
 Identities = 17/65 (26%), Positives = 29/65 (44%)

Query: 41  LKKAIQRYVQLKQEREGGIQHISWSYVWRTYHLTSAGEKLTEDRKKLRDYGIRNRDEVSF 100
           LK   +R   L++E+E   Q+  W  + R    T   ++L E R KL +   +       
Sbjct: 193 LKYIEERLHTLEEEKEELAQYQKWDKMRRALEYTIYNQELNETRAKLDELSAKRETSGEK 252

Query: 101 IKKLR 105
            ++LR
Sbjct: 253 SRQLR 257



>gi|29336596|sp|O97594|SMC3_BOVIN   Structural maintenance of chromosome 3 (Chondroitin sulfate
           proteoglycan 6)
          Length = 1218

 Score = 27.3 bits (59), Expect = 8.8
 Identities = 17/65 (26%), Positives = 29/65 (44%)

Query: 41  LKKAIQRYVQLKQEREGGIQHISWSYVWRTYHLTSAGEKLTEDRKKLRDYGIRNRDEVSF 100
           LK   +R   L++E+E   Q+  W  + R    T   ++L E R KL +   +       
Sbjct: 193 LKYIEERLHTLEEEKEELAQYQKWDKMRRALEYTIYNQELNETRAKLDELSAKRETSGEK 252

Query: 101 IKKLR 105
            ++LR
Sbjct: 253 SRQLR 257






  Database: Non-redundant SwissProt sequences
    Posted date:  Mar 15, 2005 10:11 AM
  Number of letters in database: 60,490,055
  Number of sequences in database:  164,271
  
Lambda     K      H
   0.322    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,740,417
Number of Sequences: 164271
Number of extensions: 150639
Number of successful extensions: 378
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 370
Number of HSP's gapped (non-prelim): 8
length of query: 107
length of database: 60,490,055
effective HSP length: 76
effective length of query: 31
effective length of database: 48,005,459
effective search space: 1488169229
effective search space used: 1488169229
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (27.3 bits)