BLASTP 2.2.10 [Oct-19-2004]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. RID: 1111068906-3457-138131928850.BLASTQ2 Query= hg16_dna|GENSCAN_predicted_peptide_23|544_aa (544 letters) Database: Non-redundant SwissProt sequences 164,271 sequences; 60,490,055 total letters If you have any problems or questions with the results of this search please refer to the BLAST FAQs Taxonomy reports
RID: 1111068906-3457-138131928850.BLASTQ2
Query= hg16_dna|GENSCAN_predicted_peptide_23|544_aa (544 letters)
Database: Non-redundant SwissProt sequences 164,271 sequences; 60,490,055 total letters
If you have any problems or questions with the results of this search please refer to the BLAST FAQs
Taxonomy reports
Score E Sequences producing significant alignments: (bits) Value gi|14424221|sp|O75154|EFER_HUMAN Rab11 family-interacting p... 254 4e-67 gi|25453060|sp|Q9ESN9|JIP3_MOUSE C-jun-amino-terminal kinas... 37 0.10 gi|51316120|sp|Q9W596|FUTS_DROME Microtubule-associated pro... 33 1.5 gi|399982|sp|P31314|TLX1_HUMAN T-cell leukemia homeobox pro... 33 1.9 gi|1352321|sp|P48510|DSK2_YEAST Ubiquitin-like protein DSK2 33 1.9 gi|55583951|sp|Q8MR62|VIAF_DROME Viral IAP-associated facto... 33 2.5 gi|59802613|sp|P00520|ABL1_MOUSE Proto-oncogene tyrosine-pr... 33 2.5 gi|115312|sp|P02463|CA14_MOUSE Collagen alpha 1(IV) chain p... 32 3.3 gi|5915861|sp|Q01955|CA34_HUMAN Collagen alpha 3(IV) chain ... 32 3.3 gi|44888085|sp|Q7U9S3|KDSA_SYNPX 2-dehydro-3-deoxyphosphooc... 32 3.3 gi|51338769|sp|P30754|CAFF_RIFPA Fibril-forming collagen al... 32 3.3 gi|26006814|sp|Q9ULD8|KCH3_HUMAN Potassium voltage-gated ch... 32 4.3 gi|8039779|sp|P02465|CA21_BOVIN Collagen alpha 2(I) chain p... 32 4.3 gi|32469769|sp|Q96L73|NSD1_HUMAN Nuclear receptor binding S... 32 4.3 gi|18203571|sp|Q9WUB9|MRCO_MESAU Macrophage receptor MARCO ... 32 4.3 gi|24212084|sp|Q9QYX7|PCLO_MOUSE Piccolo protein (Presynapt... 32 4.3 gi|41688524|sp|Q9UMD9|CA1G_HUMAN Collagen alpha 1(XVII) cha... 32 4.3 gi|23822294|sp|Q8PJB1|UVRB_XANAC UvrABC system protein B (U... 32 5.6 gi|51338812|sp|Q92766|RREB1_HUMAN RAS-responsive element bi... 32 5.6 gi|125136|sp|P00521|ABL_MLVAB Tyrosine-protein kinase trans... 31 7.3 gi|1709685|sp|P54278|PMS2_HUMAN PMS1 protein homolog 2 (DNA... 31 7.3 gi|44888086|sp|Q7UQ25|KDSA_RHOBA 2-dehydro-3-deoxyphosphooc... 31 7.3 gi|401706|sp|P31629|ZEP2_HUMAN Human immunodeficiency virus... 31 9.5 gi|45644957|sp|P25067|CO8A2_HUMAN Collagen alpha 2(VIII) ch... 31 9.5 gi|1708084|sp|P50899|GUXB_CELFI Exoglucanase B precursor (E... 31 9.5 gi|19855071|sp|P02466|CA21_RAT Collagen alpha 2(I) chain pr... 31 9.5 gi|25453064|sp|Q9UPT6|JIP3_HUMAN C-jun-amino-terminal kinas... 31 9.5 gi|1706587|sp|P53787|EF1D_RABIT Elongation factor 1-delta (... 31 9.5 gi|129886|sp|P16112|PGCA_HUMAN Aggrecan core protein precur... 31 9.5 Alignments
Score E Sequences producing significant alignments: (bits) Value gi|14424221|sp|O75154|EFER_HUMAN Rab11 family-interacting p... 254 4e-67 gi|25453060|sp|Q9ESN9|JIP3_MOUSE C-jun-amino-terminal kinas... 37 0.10 gi|51316120|sp|Q9W596|FUTS_DROME Microtubule-associated pro... 33 1.5 gi|399982|sp|P31314|TLX1_HUMAN T-cell leukemia homeobox pro... 33 1.9 gi|1352321|sp|P48510|DSK2_YEAST Ubiquitin-like protein DSK2 33 1.9 gi|55583951|sp|Q8MR62|VIAF_DROME Viral IAP-associated facto... 33 2.5 gi|59802613|sp|P00520|ABL1_MOUSE Proto-oncogene tyrosine-pr... 33 2.5 gi|115312|sp|P02463|CA14_MOUSE Collagen alpha 1(IV) chain p... 32 3.3 gi|5915861|sp|Q01955|CA34_HUMAN Collagen alpha 3(IV) chain ... 32 3.3 gi|44888085|sp|Q7U9S3|KDSA_SYNPX 2-dehydro-3-deoxyphosphooc... 32 3.3 gi|51338769|sp|P30754|CAFF_RIFPA Fibril-forming collagen al... 32 3.3 gi|26006814|sp|Q9ULD8|KCH3_HUMAN Potassium voltage-gated ch... 32 4.3 gi|8039779|sp|P02465|CA21_BOVIN Collagen alpha 2(I) chain p... 32 4.3 gi|32469769|sp|Q96L73|NSD1_HUMAN Nuclear receptor binding S... 32 4.3 gi|18203571|sp|Q9WUB9|MRCO_MESAU Macrophage receptor MARCO ... 32 4.3 gi|24212084|sp|Q9QYX7|PCLO_MOUSE Piccolo protein (Presynapt... 32 4.3 gi|41688524|sp|Q9UMD9|CA1G_HUMAN Collagen alpha 1(XVII) cha... 32 4.3 gi|23822294|sp|Q8PJB1|UVRB_XANAC UvrABC system protein B (U... 32 5.6 gi|51338812|sp|Q92766|RREB1_HUMAN RAS-responsive element bi... 32 5.6 gi|125136|sp|P00521|ABL_MLVAB Tyrosine-protein kinase trans... 31 7.3 gi|1709685|sp|P54278|PMS2_HUMAN PMS1 protein homolog 2 (DNA... 31 7.3 gi|44888086|sp|Q7UQ25|KDSA_RHOBA 2-dehydro-3-deoxyphosphooc... 31 7.3 gi|401706|sp|P31629|ZEP2_HUMAN Human immunodeficiency virus... 31 9.5 gi|45644957|sp|P25067|CO8A2_HUMAN Collagen alpha 2(VIII) ch... 31 9.5 gi|1708084|sp|P50899|GUXB_CELFI Exoglucanase B precursor (E... 31 9.5 gi|19855071|sp|P02466|CA21_RAT Collagen alpha 2(I) chain pr... 31 9.5 gi|25453064|sp|Q9UPT6|JIP3_HUMAN C-jun-amino-terminal kinas... 31 9.5 gi|1706587|sp|P53787|EF1D_RABIT Elongation factor 1-delta (... 31 9.5 gi|129886|sp|P16112|PGCA_HUMAN Aggrecan core protein precur... 31 9.5
>gi|14424221|sp|O75154|EFER_HUMAN Rab11 family-interacting protein 3 (Rab11-FIP3) (EF hands-containing Rab-interacting protein) (Eferin) Length = 756 Score = 254 bits (649), Expect = 4e-67 Identities = 162/287 (56%), Positives = 166/287 (57%), Gaps = 90/287 (31%) Query: 232 EANEVTDSAYMGSESTYSECETFTDEDTSTLVHPELQPEGDADSAGGSAVPSECLDAMEE 291 EANEVTDSAYMGSESTYSECETFTDEDTSTLVHPELQPEGDADSAGGSAVPSECLDAMEE Sbjct: 301 EANEVTDSAYMGSESTYSECETFTDEDTSTLVHPELQPEGDADSAGGSAVPSECLDAMEE 360 Query: 292 PDXXXXXXXXXXXXXXXQSVITVIGGEEHFEDYGEGSEAELSPETLCNGQLGCSDPAFLT 351 PD QSVITVIGGEEHFEDYGEGSEAELSPETLCNGQLGCSDPAFLT Sbjct: 361 PDHGALLLLPGRPHPHGQSVITVIGGEEHFEDYGEGSEAELSPETLCNGQLGCSDPAFLT 420 Query: 352 PRRSTPASGPEALGGEVTGSTDPLAAKLH--SILTDEAFEFYCSQCHKQINRLEDLSARL 409 P + S + +A LH LT EA LED S Sbjct: 421 PSPTKRLSSKK------------VARYLHQSGALTMEA--------------LEDPSP-- 452 Query: 410 SDLEMNSPTKRLSSKKVARYLHQSGALTMEALEDPSPELMEGPEEDIADKVSDSHLGPSA 469 E +E P EEDIADK Sbjct: 453 -----------------------------ELMEGP--------EEDIADK---------- 465 Query: 470 SGCLTLKPGLIAKVVFLERRVLELEKDTAATGEQHSRLRQENLQLVH 516 VVFLERRVLELEKDTAATGEQHSRLRQENLQLVH Sbjct: 466 -------------VVFLERRVLELEKDTAATGEQHSRLRQENLQLVH 499
Score = 74.3 bits (181), Expect = 8e-13 Identities = 32/33 (96%), Positives = 33/33 (100%) Query: 7 PDGQCYGGVASAQDEEPLACPDEFDDFVTYEAS 39 PDGQCYGGVASAQDEEPLACPDEFDDFVTYEA+ Sbjct: 271 PDGQCYGGVASAQDEEPLACPDEFDDFVTYEAN 303
>gi|25453060|sp|Q9ESN9|JIP3_MOUSE C-jun-amino-terminal kinase interacting protein 3 (JNK-interacting protein 3) (JIP-3) (JNK MAP kinase scaffold protein 3) (Mitogen-activated protein kinase 8-interacting protein 3) (JNK/SAPK-associated protein 1) (JSAP1) (Sunday driver 2) Length = 1337 Score = 37.4 bits (85), Expect = 0.10 Identities = 26/77 (33%), Positives = 35/77 (45%), Gaps = 11/77 (14%) Query: 222 ELPRDGPCSSEANEV----------TDSAYMGSESTYSECETFTDEDTSTLVHPELQPEG 271 E+P GP SEA V TD A S ST E + E T+V P+++P G Sbjct: 901 EVPDPGPSESEATTVRPGPLTEHVFTDPAPTPSSSTQPASENGS-ESNGTIVQPQVEPSG 959 Query: 272 DADSAGGSAVPSECLDA 288 + + SA P+ L A Sbjct: 960 ELSTTTSSAAPTMWLGA 976
>gi|51316120|sp|Q9W596|FUTS_DROME Microtubule-associated protein futsch Length = 5412 Score = 33.5 bits (75), Expect = 1.5 Identities = 73/310 (23%), Positives = 114/310 (36%), Gaps = 28/310 (9%) Query: 249 SEC--ETFTDEDTSTLVHPEL-QPEGDADSAGGSAVPSECLDAMEEPDXXXXXXXXXXXX 305 +EC E +D S V E +P A+S +A ++ + P Sbjct: 2653 AECASEEIASQDKSPQVLKESSRPAWVAESKDDAAQLKSSVEDLRSPVASTEISRPASAG 2712 Query: 306 XXXQSVITVIGGEEHFEDYGEGSEAELS--PETL-CNGQLGC-SDPAFLT----PRRSTP 357 S I EE +D+ E +AE + P T+ G L S P + P+ STP Sbjct: 2713 ETASSPI-----EEAPKDFAEFEQAEKAVLPLTIELKGNLPTLSSPVDVAHGDFPQTSTP 2767 Query: 358 ASGPEALGGEVTGSTDPLAAKLHSILTDEAFEFY--CSQCHKQINRLEDLSARLSDLEMN 415 S P + + K S DEA + C + + E +E + Sbjct: 2768 TSSPTVASVQPAELSKVDIEKTASSPIDEAPKSLIGCPAEERPESPAESAKDAAESVEKS 2827 Query: 416 SPTKRLSSKKVARYLHQSGALTMEALEDPSPE-LMEGPEEDIADKVSDSHLGPSASGCLT 474 R S + + A + + PSPE ++EGP++D+ +K +S PS S +T Sbjct: 2828 KDASRPPS-----VVESTKADSTKGDISPSPESVLEGPKDDV-EKSKESSRPPSVSASIT 2881 Query: 475 LKPGLIAKVVFLERRVLELEKDTAATGEQHSRLRQENLQLVHSLWGPDVPSCQSQTRPGS 534 G K V V+E KD E + ++ D S ++ Sbjct: 2882 ---GDSTKDVSRPASVVESVKDEHDKAESRRESIAKVESVIDEAGKSDSKSSSQDSQKDE 2938 Query: 535 HVDLASQEAS 544 LAS+EAS Sbjct: 2939 KSTLASKEAS 2948
>gi|399982|sp|P31314|TLX1_HUMAN T-cell leukemia homeobox protein 1 (Homeobox protein Hox-11) (TCL-3 proto-oncogene) Length = 330 Score = 33.1 bits (74), Expect = 1.9 Identities = 24/68 (35%), Positives = 29/68 (42%), Gaps = 1/68 (1%) Query: 126 PLGAAGKVEVAAASPGQPAAEQGASSRPGALSIDGDGMEVDVHNPRANKGAQPLTDILGL 185 PL + V +A A P G+S GALS G + V H P A A P GL Sbjct: 96 PLTGSYNVNMALAGGPGPGGGGGSSGGAGALSAAG-VIRVPAHRPLAGAVAHPQPLATGL 154 Query: 186 PAFLATPA 193 P + PA Sbjct: 155 PTVPSVPA 162
>gi|1352321|sp|P48510|DSK2_YEAST Ubiquitin-like protein DSK2 Length = 373 Score = 33.1 bits (74), Expect = 1.9 Identities = 29/95 (30%), Positives = 43/95 (45%), Gaps = 14/95 (14%) Query: 127 LGAAGKVEVAAASPGQPAAEQGASSRPGALSIDGDGMEVDV-HNPRANKGAQPLTDILGL 185 +G+AG A +PG A E+G+++ + S G+ + N AN A P +L Sbjct: 226 MGSAGGAASAFPAPGGDAPEEGSNTNTTSSSNTGNNAGTNAGTNAGANTAANPFASLL-- 283 Query: 186 PAFLATPAFSCLAS--RRPSTGQPCPEWALGPAVL 218 PA + A+ R STG P A PA+L Sbjct: 284 -----NPALNPFANAGNRASTGMP----AFDPALL 309
>gi|55583951|sp|Q8MR62|VIAF_DROME Viral IAP-associated factor 1 homolog Length = 240 Score = 32.7 bits (73), Expect = 2.5 Identities = 15/43 (34%), Positives = 27/43 (62%) Query: 420 RLSSKKVARYLHQSGALTMEALEDPSPELMEGPEEDIADKVSD 462 +L+++++ L Q+GA+ E EDP P++ + D+ DK SD Sbjct: 196 KLTAEELEFMLGQAGAVPTEITEDPRPQIRDKMLADLEDKSSD 238
>gi|59802613|sp|P00520|ABL1_MOUSE Proto-oncogene tyrosine-protein kinase ABL1 (p150) (c-ABL) Length = 1123 Score = 32.7 bits (73), Expect = 2.5 Identities = 35/117 (29%), Positives = 43/117 (36%), Gaps = 17/117 (14%) Query: 63 PASGLSSVEAGVKE-----GPPALC--APWGEGLRAQPWSTERNHVRR------SGGLDS 109 P+SGLS E K G PA AP + S+E VRR S G D Sbjct: 824 PSSGLSHKEEATKGSASGMGTPATAEPAPPSNKVGLSKASSEEMRVRRHKHSSESPGRDK 883 Query: 110 RRATWLQQKMHEVELEPLGAAGKVEVAAASPGQPAAEQGASSRPGALSIDGDGMEVD 166 R K+ P GK A SP Q A E G ++ S+ D + D Sbjct: 884 GRLA----KLKPAPPPPPACTGKAGKPAQSPSQEAGEAGGPTKTKCTSLAMDAVNTD 936
>gi|115312|sp|P02463|CA14_MOUSE Collagen alpha 1(IV) chain precursor Length = 1669 Score = 32.3 bits (72), Expect = 3.3 Identities = 27/93 (29%), Positives = 33/93 (35%), Gaps = 16/93 (17%) Query: 126 PLGAAGKVEVAAASPGQPAAEQGASSRPGALSIDGDGMEVDVHNPRANKGAQPLTDILGL 185 P G G +V PG P G PG + G P KG Q +T +GL Sbjct: 1345 PPGPPGPYDVIKGEPGLP----GPEGPPGLKGLQG---------PPGPKGQQGVTGSVGL 1391 Query: 186 PAFLATPAFSCLASRRPST---GQPCPEWALGP 215 P P F ++ T G P P GP Sbjct: 1392 PGPPGVPGFDGAPGQKGETGPFGPPGPRGFPGP 1424
>gi|5915861|sp|Q01955|CA34_HUMAN Collagen alpha 3(IV) chain precursor (Goodpasture antigen) Length = 1670 Score = 32.3 bits (72), Expect = 3.3 Identities = 28/89 (31%), Positives = 31/89 (34%), Gaps = 3/89 (3%) Query: 127 LGAAGKVEVAAASPGQPAAEQGASSRPGALSIDGDGMEVDVHNPRANKGAQPLTDILGLP 186 LG GK+ PG+P GA P G G R N G + GLP Sbjct: 720 LGCPGKMGEPGL-PGKPGLP-GAKGEPAVAMPGGPGTP-GFPGERGNSGEHGEIGLPGLP 776 Query: 187 AFLATPAFSCLASRRPSTGQPCPEWALGP 215 TP L R GQP P GP Sbjct: 777 GLPGTPGNEGLDGPRGDPGQPGPPGEQGP 805
>gi|44888085|sp|Q7U9S3|KDSA_SYNPX 2-dehydro-3-deoxyphosphooctonate aldolase (Phospho-2-dehydro-3-deoxyoctonate aldolase) (3-deoxy-D-manno-octulosonic acid 8-phosphate synthetase) (KDO-8-phosphate synthetase) (KDO 8-P synthase) (KDOPS) Length = 283 Score = 32.3 bits (72), Expect = 3.3 Identities = 18/48 (37%), Positives = 22/48 (45%) Query: 143 PAAEQGASSRPGALSIDGDGMEVDVHNPRANKGAQPLTDILGLPAFLA 190 P E G G + DVH+P K A + DI+ LPAFLA Sbjct: 72 PGLEAGLQILQAVKDTLGIPVITDVHSPEEAKAAAKVADIIQLPAFLA 119
>gi|51338769|sp|P30754|CAFF_RIFPA Fibril-forming collagen alpha chain Length = 1027 Score = 32.3 bits (72), Expect = 3.3 Identities = 42/155 (27%), Positives = 56/155 (36%), Gaps = 22/155 (14%) Query: 63 PASGLSSVEAGVKEGPPALCAPWGEGLRAQPWSTERNHVRRSGGLDSRRATWLQQKMHEV 122 P S ++G+K G L P GL QP N G+D Sbjct: 180 PGSKGDRGQSGIK-GAQGLQGP--VGLSGQPGVAGENGHPGMPGMDGANG---------- 226 Query: 123 ELEPLGAAGKVEVAAAS--PGQPAAEQGASSRPGALSIDGDGMEVDVHNPRANKGAQPLT 180 EP GA+G+ + S PG P G + PG GDG + GA + Sbjct: 227 --EP-GASGESGLPGPSGFPG-PRGMPGTAGSPGQAGAKGDGGPT---GEQGRPGAPGVK 279 Query: 181 DILGLPAFLATPAFSCLASRRPSTGQPCPEWALGP 215 G P + P + A +R S G P P + GP Sbjct: 280 GSSGPPGDVGAPGHAGEAGKRGSPGSPGPAGSPGP 314
>gi|26006814|sp|Q9ULD8|KCH3_HUMAN Potassium voltage-gated channel subfamily H member 3 (Voltage-gated potassium channel subunit Kv12.2) (Ether-a-go-go like potassium channel 2) (ELK channel 2) (ELK2) (Brain-specific eag-like channel 1) (BEC1) Length = 1083 Score = 32.0 bits (71), Expect = 4.3 Identities = 34/110 (30%), Positives = 42/110 (38%), Gaps = 14/110 (12%) Query: 56 YALQLVPPA-SGLSSVEAGVKEGPPALCAPWGEG---LRAQPW--------STERNHVRR 103 Y LQ PPA S LS + GPP L APW G ++ PW ST + Sbjct: 947 YCLQ--PPAGSVLSGTWPHPRPGPPPLMAPWPWGPPASQSSPWPRATAFWTSTSDSEPPA 1004 Query: 104 SGGLDSRRATWLQQKMHEVELEPLGAAGKVEVAAASPGQPAAEQGASSRP 153 SG L S +T E A + A S G+P G + P Sbjct: 1005 SGDLCSEPSTPASPPPSEEGARTGPAEPVSQAEATSTGEPPPGSGGLALP 1054
>gi|8039779|sp|P02465|CA21_BOVIN Collagen alpha 2(I) chain precursor Length = 1364 Score = 32.0 bits (71), Expect = 4.3 Identities = 31/97 (31%), Positives = 35/97 (36%), Gaps = 10/97 (10%) Query: 126 PLGAAGKVEVAAA----SPGQPAAEQGASSRPGALSIDGDGMEVDVHNPRANKGAQPLTD 181 P G AGK + P + E GAS PG + G E P G Q L Sbjct: 807 PPGPAGKEGLRGPRGDQGPVGRSGETGASGPPGFVGEKGPSGEPGTAGPPGTPGPQGL-- 864 Query: 182 ILGLPAFLATPAF---SCLASRRPSTGQPCPEWALGP 215 LG P FL P L S G+P P GP Sbjct: 865 -LGAPGFLGLPGSRGERGLPGVAGSVGEPGPLGIAGP 900
>gi|32469769|sp|Q96L73|NSD1_HUMAN Nuclear receptor binding SET domain containing protein 1 (NR-binding SET domain containing protein) (Androgen receptor-associated coregulator 267) Length = 2696 Score = 32.0 bits (71), Expect = 4.3 Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 6/57 (10%) Query: 310 SVITVIGGEEH-FEDYGEGSEAELSP-----ETLCNGQLGCSDPAFLTPRRSTPASG 360 S + V GG H E G+G++ +P ++ +G+L S P L+ +R PASG Sbjct: 953 SKVLVSGGSTHNSEKKGDGTQNSANPSPSGGDSALSGELSASLPGLLSDKRDLPASG 1009
>gi|18203571|sp|Q9WUB9|MRCO_MESAU Macrophage receptor MARCO (Macrophage receptor with collagenous structure) Length = 483 Score = 32.0 bits (71), Expect = 4.3 Identities = 23/84 (27%), Positives = 31/84 (36%), Gaps = 7/84 (8%) Query: 128 GAAG----KVEVAAASPGQPAAEQGASSRPGALSIDGDGMEVDVHNPRANKGAQPLTDIL 183 GAAG K E P P QG S PGA + G + + + KG + + Sbjct: 278 GAAGPSGAKGEPGHPGPPGPTGPQGISGSPGAAGLKGSKGDTGIQGQKGTKGESGVPGLA 337 Query: 184 GLPAFLATPAFSCLASRRPSTGQP 207 G P LA + G+P Sbjct: 338 GRKGDTGNPG---LAGPKGEPGRP 358
>gi|24212084|sp|Q9QYX7|PCLO_MOUSE Piccolo protein (Presynaptic cytomatrix protein) (Aczonin) (Brain-derived HLMN protein) Length = 5038 Score = 32.0 bits (71), Expect = 4.3 Identities = 35/162 (21%), Positives = 57/162 (35%), Gaps = 20/162 (12%) Query: 142 QPAAEQGASSRPGALSIDGDGMEVDVHNPRANKGAQPLTDILGLPAFLATPAFSCLASRR 201 +PA++ S PG S D ++ +A P D +P TP + R Sbjct: 736 RPASDSKIVSHPGPTSESKDPVQKKEEPKKAQTKVTPKPDTKPVPKGSPTP-----SGTR 790 Query: 202 PSTGQPCPEWALGPAVLQE-----------WELPRDGPCSSEANEVTDSAYMGSESTYSE 250 P+TGQ P+ P ++ + P+ P + + VT + S +S+ Sbjct: 791 PTTGQATPQSQQPPKPPEQSRRFSLNLGGIADAPKSQPTTPQ-ETVTGKLFGFGASIFSQ 849 Query: 251 CETFTDEDTSTLVHPELQPEGDADSAGGSAVPSECLDAMEEP 292 HP+ P + A PS+ L A P Sbjct: 850 ASNLISTAGQQAPHPQTGPAAPSKQA---PPPSQTLAAQGPP 888
>gi|41688524|sp|Q9UMD9|CA1G_HUMAN Collagen alpha 1(XVII) chain (Bullous pemphigoid antigen 2) (180 kDa bullous pemphigoid antigen 2) Length = 1497 Score = 32.0 bits (71), Expect = 4.3 Identities = 56/221 (25%), Positives = 72/221 (32%), Gaps = 43/221 (19%) Query: 43 PGAWGKSGI--HLFLYALQLVPPASGLSSVEAGVKEGPPALCAPWGEGLRAQPWSTERNH 100 PG G +G+ H + LQ P G GPP P GEGL P Sbjct: 838 PGPAGPAGLPGHQEVLNLQGPPGPPGPRGPPGPSIPGPPGPRGPPGEGLPGPPGP----- 892 Query: 101 VRRSGGLDSRRATWLQQKMHEVELEPLGAAGKV-EVAAASPGQPAAEQGASSRPG----- 154 G S T+L P G G P P QG PG Sbjct: 893 ---PGSFLSNSETFL--------FGPPGPPGPPGPKGDQGPPGPRGHQGEQGLPGFSTSG 941 Query: 155 ----ALSIDGDGMEVDVHNPRANKGAQPLTDILGLPAFLATPAFSCLASRRPSTGQPCPE 210 L++ G P+ +KG + LG+P + P+ +S +G P P Sbjct: 942 SSSFGLNLQGPPGPPGPQGPKGDKGDPGVPGALGIP---SGPSEGGSSSTMYVSGPPGPP 998 Query: 211 WALGPAVLQEWELPRDGPCSSEANEVTD--SAYMGSESTYS 249 GP G SS E+ S YM S+S S Sbjct: 999 GPPGP----------PGSISSSGQEIQQYISEYMQSDSIRS 1029
>gi|23822294|sp|Q8PJB1|UVRB_XANAC UvrABC system protein B (UvrB protein) (Excinuclease ABC subunit B) Length = 673 Score = 31.6 bits (70), Expect = 5.6 Identities = 25/86 (29%), Positives = 41/86 (47%), Gaps = 9/86 (10%) Query: 418 TKRLSSKKVARYLHQSGALTMEALEDPSPELMEGPEEDIADKVS------DSHLGPSASG 471 T R K+V L +T +++E P ++MEG +D A+K S H+ Sbjct: 568 TDRRREKQVEYNLEHG--ITPKSVERPIADIMEGARDDAAEKKSGKGRSKSRHVAEETPD 625 Query: 472 CLTLKPGLIA-KVVFLERRVLELEKD 496 +KP IA K+ LE+++ + KD Sbjct: 626 YRAMKPAEIAGKLKSLEQKMYQHAKD 651
>gi|51338812|sp|Q92766|RREB1_HUMAN RAS-responsive element binding protein 1 (RREB-1) (Raf responsive zinc finger protein LZ321) Length = 755 Score = 31.6 bits (70), Expect = 5.6 Identities = 73/361 (20%), Positives = 114/361 (31%), Gaps = 55/361 (15%) Query: 125 EPLGAAGKVEVAAASPGQPAA-------EQGASSRP----GALSIDGDGMEVDVHNPRAN 173 EP A E A+ + PA ++G SRP G + +D G + A Sbjct: 197 EPPAPASSPEAASPTEQGPARTSKKRGRKRGMRSRPRANSGGVDLDSSGEFASIEKMLAT 256 Query: 174 KGAQPLTDILGLPAFLATPAFSCLASRRPSTGQPCPEWALGPAVLQEWELPRDGPCSSEA 233 TD FL T + ++ G P GP+ ++ P D ++ Sbjct: 257 ------TDTNKFSPFLQTAEDN---TQDEVAGAPADHH--GPSDEEQGSPPEDKLLRAKR 305 Query: 234 NEVTDSAYMGSESTYSECETFTDEDTST----LVHPELQPEGDADSAGGSAVPSECLDAM 289 N T+ + T C +S L H + Q + + +A G + D Sbjct: 306 NSYTNCL---QKITCPHCPRVFPWASSLQRHMLTHTDSQSDAETAAAAGEVLDLTSRDR- 361 Query: 290 EEPDXXXXXXXXXXXXXXXQSVITVIGGEEHFEDYGEGSEAELSPETLCNGQLGCSDPAF 349 E+P + H E++G G E E G +D Sbjct: 362 EQPSEGATELRQVAGDAPVEQATAETASPVHREEHGRGESHEPEEEHGTEESTGDADGGR 421 Query: 350 LTPRRSTP-------ASGPEALGGEVTGSTDPLAAKLHSILTDEAFEFYCSQCHKQINRL 402 + P A G +A GG G A++ + C C K L Sbjct: 422 GRVEQPEPGPGLRHQAHGLQAGGGRRRGRPGGAASQEQKLA--------CDTCGKSFKFL 473 Query: 403 EDLSARLSDLEMNSPTKRLSSKKVARYLHQSGALTMEALEDPSPELMEGPEEDIADKVSD 462 LS ++ ++ + GA T E P+PE E P E A+ V Sbjct: 474 GTLSRH----------RKAHGRQEPKDEKGDGATTAEEGPSPAPEQEEKPPETPAEVVES 523 Query: 463 S 463 + Sbjct: 524 A 524
>gi|125136|sp|P00521|ABL_MLVAB Tyrosine-protein kinase transforming protein Abl (V-abl) Length = 746 Score = 31.2 bits (69), Expect = 7.3 Identities = 34/117 (29%), Positives = 43/117 (36%), Gaps = 17/117 (14%) Query: 63 PASGLSSVEAGVKE-----GPPALC--APWGEGLRAQPWSTERNHVRR------SGGLDS 109 P+SGLS + K G PA AP + S+E VRR S G D Sbjct: 447 PSSGLSHKKEATKGSASGMGTPATAEPAPPSNKVGLSKASSEEMRVRRHKHSSESPGRDK 506 Query: 110 RRATWLQQKMHEVELEPLGAAGKVEVAAASPGQPAAEQGASSRPGALSIDGDGMEVD 166 R K+ P GK A SP Q A E G ++ S+ D + D Sbjct: 507 GRLA----KLKPAPPPPPACTGKAGKPAQSPSQEAGEAGGPTKTKCTSLAMDAVNTD 559
>gi|1709685|sp|P54278|PMS2_HUMAN PMS1 protein homolog 2 (DNA mismatch repair protein PMS2) Length = 862 Score = 31.2 bits (69), Expect = 7.3 Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 2/59 (3%) Query: 134 EVAAASPGQPAAEQGASSRPGALSIDGDGMEVDVHNPRANKGAQPLTDILGLPAFLATP 192 E AA+SPG +++ S+ A D +VD H+ + + G + +L P LATP Sbjct: 518 EYAASSPGDRGSQEHVDSQEKAPETDDSFSDVDCHSNQEDTGCK--FRVLPQPTNLATP 574
>gi|44888086|sp|Q7UQ25|KDSA_RHOBA 2-dehydro-3-deoxyphosphooctonate aldolase (Phospho-2-dehydro-3-deoxyoctonate aldolase) (3-deoxy-D-manno-octulosonic acid 8-phosphate synthetase) (KDO-8-phosphate synthetase) (KDO 8-P synthase) (KDOPS) Length = 281 Score = 31.2 bits (69), Expect = 7.3 Identities = 20/65 (30%), Positives = 29/65 (44%), Gaps = 2/65 (3%) Query: 143 PAAEQGASSRPGALSIDGDGMEVDVHNPRANKGAQPLTDILGLPAFLATPAFSCLASRRP 202 P EQG + G + D+H P + D+L +PAFLA +A+ Sbjct: 76 PGIEQGLGLLEAVRANTGLPVTTDIHLPEQAAAVGEVCDLLQIPAFLARQTDLLVAA--A 133 Query: 203 STGQP 207 STG+P Sbjct: 134 STGRP 138
>gi|401706|sp|P31629|ZEP2_HUMAN Human immunodeficiency virus type I enhancer-binding protein 2 (HIV-EP2) Length = 1833 Score = 30.8 bits (68), Expect = 9.5 Identities = 18/57 (31%), Positives = 24/57 (42%) Query: 228 PCSSEANEVTDSAYMGSESTYSECETFTDEDTSTLVHPELQPEGDADSAGGSAVPSE 284 P S E +E + + S ET E + V PE P GD +GG PS+ Sbjct: 198 PNSFERSESAELVACTQDKAPSPSETCDSEISEAPVSPEWAPPGDGAESGGKPSPSQ 254
>gi|45644957|sp|P25067|CO8A2_HUMAN Collagen alpha 2(VIII) chain precursor (Endothelial collagen) Length = 703 Score = 30.8 bits (68), Expect = 9.5 Identities = 42/160 (26%), Positives = 55/160 (34%), Gaps = 19/160 (11%) Query: 61 VPPASGLSSVE--AGVK-----EGPPALCAPWGEGLRAQPW-STERNHVRRSGGLDSRRA 112 VP A+GL + +G K GPP L P G G+ P +R G L R Sbjct: 282 VPGAAGLPGPQGPSGAKGEPGTRGPPGLIGPTGYGMPGLPGPKGDRGPAGVPGLLGDRGE 341 Query: 113 TWLQQKMHEVELEPLGAAGKVEVAAASPGQ-----PAAEQGASSRPGALSIDGDGMEVDV 167 + E + LG + +A PG+ P E G PG I GD Sbjct: 342 PGEDGEPGEQGPQGLGGPPGLPGSAGLPGRRGPPGPKGEAGPGGPPGVPGIRGD------ 395 Query: 168 HNPRANKGAQPLTDILGLPAFLATPAFSCLASRRPSTGQP 207 P G + GLP P + TG+P Sbjct: 396 QGPSGLAGKPGVPGERGLPGAHGPPGPTGPKGEPGFTGRP 435
>gi|1708084|sp|P50899|GUXB_CELFI Exoglucanase B precursor (Exocellobiohydrolase B) (1,4-beta-cellobiohydrolase B) (CBP120) Length = 1090 Score = 30.8 bits (68), Expect = 9.5 Identities = 13/35 (37%), Positives = 20/35 (57%) Query: 345 SDPAFLTPRRSTPASGPEALGGEVTGSTDPLAAKL 379 + PA P + P+S P L ++G TDP+ A+L Sbjct: 154 NSPATYAPEFNHPSSYPSQLNSGISGGTDPIGAEL 188
>gi|19855071|sp|P02466|CA21_RAT Collagen alpha 2(I) chain precursor Length = 1372 Score = 30.8 bits (68), Expect = 9.5 Identities = 31/93 (33%), Positives = 32/93 (34%), Gaps = 13/93 (13%) Query: 126 PLGAAGKVEVAAA----SPGQPAAEQGASSRPGALSIDGDGMEVDVHNPRANKGAQPLTD 181 P GAAGK + P E GAS PG G E P G Q L Sbjct: 815 PPGAAGKEGIRGPRGDQGPVGRTGEIGASGPPGFAGEKGPSGEPGTTGPPGTAGPQGL-- 872 Query: 182 ILGLPAFLATPAFSCLASRRPSTGQPCPEWALG 214 LG P L P R GQP ALG Sbjct: 873 -LGAPGILGLPG------SRGERGQPGIAGALG 898
>gi|25453064|sp|Q9UPT6|JIP3_HUMAN C-jun-amino-terminal kinase interacting protein 3 (JNK-interacting protein 3) (JIP-3) (JNK MAP kinase scaffold protein 3) (Mitogen-activated protein kinase 8-interacting protein 3) Length = 1334 Score = 30.8 bits (68), Expect = 9.5 Identities = 22/64 (34%), Positives = 28/64 (43%), Gaps = 3/64 (4%) Query: 225 RDGPCSSEANEVTDSAYMGSESTYSECETFTDEDTSTLVHPELQPEGDADSAGGSAVPSE 284 R GP + TD A S E + D+S+ PE +P GD AG SA P+ Sbjct: 913 RPGPLTEHV--FTDPAPTPSSGPQPGSENGPEPDSSS-TRPEPEPSGDPTGAGSSAAPTM 969 Query: 285 CLDA 288 L A Sbjct: 970 WLGA 973
>gi|1706587|sp|P53787|EF1D_RABIT Elongation factor 1-delta (EF-1-delta) Length = 280 Score = 30.8 bits (68), Expect = 9.5 Identities = 30/104 (28%), Positives = 49/104 (47%), Gaps = 11/104 (10%) Query: 358 ASGPEALGGEVTGSTDPLAAKLHSI-LTDEAFEFYCSQCHKQINRLEDLSARLSDLEMNS 416 +SGP A G G LA ++ S+ + ++ + +++LE ARLS LE +S Sbjct: 64 SSGPGASSGP-GGDHSELAVRIASLEVENQNLRGVVQDLQRAVSKLE---ARLSALEKSS 119 Query: 417 PTKRLSSKKVARYLHQSGALTMEALEDPSPELMEGPEEDIADKV 460 PT R S+ + H S M +E P+ + E+D D + Sbjct: 120 PTHRASAPQTQ---HVS---PMRQVEPPAKKAAAPAEDDEDDDI 157
>gi|129886|sp|P16112|PGCA_HUMAN Aggrecan core protein precursor (Cartilage-specific proteoglycan core protein) (CSPCP) (Chondroitin sulfate proteoglycan core protein 1) Length = 2415 Score = 30.8 bits (68), Expect = 9.5 Identities = 31/138 (22%), Positives = 51/138 (36%), Gaps = 12/138 (8%) Query: 250 ECETFTDEDTSTLVHPELQPEGDADSAGGSAVPSECLDAMEEPDXXXXXXXXXXXXXXXQ 309 E + + + T +PE G SA P + PD Sbjct: 1977 EVSSVPESSSETSAYPEA-------GFGASAAPEASREDSGSPDLSETTSAFHEANLERS 2029 Query: 310 SVITVIGGEEHFEDYGEGSEA-ELSPETLCNGQLGCSDPAFLTPRRSTPASGPEA-LGGE 367 S + V G F++ GE S A E+S E+ +G P P + ASG + G+ Sbjct: 2030 SGLGVSGSTLTFQE-GEASAAPEVSGESTTTSDVGTEAPGL--PSATPTASGDRTEISGD 2086 Query: 368 VTGSTDPLAAKLHSILTD 385 ++G T L + + + + Sbjct: 2087 LSGHTSQLGVVISTSIPE 2104
Database: Non-redundant SwissProt sequences Posted date: Mar 15, 2005 10:11 AM Number of letters in database: 60,490,055 Number of sequences in database: 164,271 Lambda K H 0.311 0.130 0.391 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 12,925,713 Number of Sequences: 164271 Number of extensions: 589685 Number of successful extensions: 1312 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 11 Number of HSP's that attempted gapping in prelim test: 1306 Number of HSP's gapped (non-prelim): 19 length of query: 544 length of database: 60,490,055 effective HSP length: 115 effective length of query: 429 effective length of database: 41,598,890 effective search space: 17845923810 effective search space used: 17845923810 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.8 bits) S2: 68 (30.8 bits)
