BLASTP 2.2.10 [Oct-19-2004]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. RID: 1111067370-7299-10006151710.BLASTQ4 Query= hg16_dna|GENSCAN_predicted_peptide_13|371_aa (371 letters) Database: Non-redundant SwissProt sequences 164,271 sequences; 60,490,055 total letters If you have any problems or questions with the results of this search please refer to the BLAST FAQs Taxonomy reports
RID: 1111067370-7299-10006151710.BLASTQ4
Query= hg16_dna|GENSCAN_predicted_peptide_13|371_aa (371 letters)
Database: Non-redundant SwissProt sequences 164,271 sequences; 60,490,055 total letters
If you have any problems or questions with the results of this search please refer to the BLAST FAQs
Taxonomy reports
Score E Sequences producing significant alignments: (bits) Value gi|47116932|sp|Q9NQ29|L7L1_HUMAN Putative RNA-binding prote... 484 e-136 gi|47116747|sp|Q9CYI4|L7L1_MOUSE Putative RNA-binding prote... 475 e-134 gi|47116960|sp|Q9Y383|L7L2_HUMAN Putative RNA-binding prote... 409 e-114 gi|47115719|sp|Q7TNC4|L7L2_MOUSE Putative RNA-binding prote... 408 e-113 gi|2496831|sp|Q09217|YP68_CAEEL Hypothetical protein B0495.... 142 1e-33 gi|42558930|sp|Q91Z80|LPA4_RAT Liprin-alpha 4 (Protein tyro... 40 0.013 gi|18202761|sp|Q9CBT5|SMC_MYCLE Chromosome partition protei... 37 0.11 gi|7531285|sp|P51834|SMC_BACSU Chromosome partition protein... 36 0.14 gi|42558942|sp|O75334|LPA2_HUMAN Liprin-alpha 2 (Protein ty... 36 0.18 gi|42558981|sp|Q8BSS9|LIPA2_MOUSE Liprin-alpha 2 (Protein t... 36 0.18 gi|20178336|sp|P21107|TPM3_MOUSE Tropomyosin alpha 3 chain ... 35 0.24 gi|20978622|sp|Q96YR5|RAD50_SULTO DNA double-strand break r... 35 0.24 gi|42558969|sp|Q13136|LPA1_HUMAN Liprin-alpha 1 (Protein ty... 35 0.41 gi|136085|sp|P06753|TPM3_HUMAN Tropomyosin alpha 3 chain (T... 35 0.41 gi|20141312|sp|O14529|CUTL2_HUMAN Homeobox protein Cux-2 (C... 33 0.91 gi|2493151|sp|Q57675|VATI_METJA V-type ATP synthase subunit... 33 1.2 gi|42558938|sp|Q8TD31|HCR_HUMAN Alpha helical coiled-coil r... 33 1.5 gi|42558936|sp|Q8HZ60|HCR_PANTR Alpha helical coiled-coil r... 33 1.5 gi|30173386|sp|Q9NTJ3|SMC4_HUMAN Structural maintenance of ... 33 1.5 gi|42558933|sp|Q8HZ57|HCR_PANPA Alpha helical coiled-coil r... 33 1.5 gi|42558934|sp|Q8HZ58|HCR_PONPY Alpha helical coiled-coil r... 33 1.5 gi|29336591|sp|O93308|SMC1A_XENLA Structural maintenance of... 33 1.5 gi|126663|sp|P12379|M24_STRPY M protein, serotype 24 precursor 32 2.0 gi|17380300|sp|Q10970|SMC_MYCTU Chromosome partition protei... 32 2.0 gi|1708962|sp|P54576|MCPC_BACSU Methyl-accepting chemotaxis... 32 2.0 gi|29839607|sp|Q9BT49|THAP7_HUMAN THAP domain protein 7 32 2.0 gi|25452884|sp|Q9KKF0|CH60_CLODI 60 kDa chaperonin (Protein... 32 2.0 gi|399227|sp|Q02224|CENPE_HUMAN Centromeric protein E (CENP... 32 2.6 gi|42558941|sp|O75145|LPA3_HUMAN Liprin-alpha 3 (Protein ty... 32 2.6 gi|126366|sp|P07942|LMB1_HUMAN Laminin beta-1 chain precurs... 32 2.6 gi|1346921|sp|P22290|PVDR_PLAVS Duffy receptor precursor (E... 32 2.6 gi|51338816|sp|Q99323|MYSN_DROME Myosin heavy chain, non-mu... 32 2.6 gi|42558929|sp|Q91Z79|LIPA3_RAT Liprin-alpha 3 (Protein tyr... 32 2.6 gi|30580382|sp|Q9VJE5|C190_DROME Restin homolog (Cytoplasmi... 32 3.4 gi|59797783|sp|Q6YR94|CH60_ONYPE 60 kDa chaperonin (Protein... 32 3.4 gi|42558935|sp|Q8HZ59|HCR_GORGO Alpha helical coiled-coil r... 32 3.4 gi|11386837|sp|Q9KDV4|GAL1_BACHD Galactokinase (Galactose k... 32 3.4 gi|266596|sp|P29616|MYSC_CHICK Myosin heavy chain, cardiac ... 32 3.4 gi|29839577|sp|Q8VCZ3|THA7_MOUSE THAP domain protein 7 31 4.5 gi|3914084|sp|P94545|MUTS2_BACSU MutS2 protein 31 4.5 gi|2493733|sp|P75247|CLPB_MYCPN ClpB protein 31 4.5 gi|29336622|sp|Q14683|SMC1A_HUMAN Structural maintenance of... 31 5.9 gi|126367|sp|P02469|LMB1_MOUSE Laminin beta-1 chain precurs... 31 5.9 gi|29336527|sp|Q9Z1M9|SMC1A_RAT Structural maintenance of c... 31 5.9 gi|60392985|sp|P70388|RAD50_MOUSE DNA repair protein RAD50 ... 31 5.9 gi|41018047|sp|Q8EWX0|RPOC_MYCPE DNA-directed RNA polymeras... 31 5.9 gi|3043372|sp|P11055|MYH3_HUMAN Myosin heavy chain, fast sk... 31 5.9 gi|54036459|sp|Q6CDX0|SMI1_YARLI KNR4/SMI1 homolog 31 5.9 gi|29336595|sp|O97593|SMC1A_BOVIN Structural maintenance of... 31 5.9 gi|29336930|sp|Q9CU62|SMC1A_MOUSE Structural maintenance of... 31 5.9 gi|2506362|sp|P15042|DNLJ_ECOLI DNA ligase (Polydeoxyribonu... 31 5.9 gi|27924000|sp|P51123|TAF1_DROME Transcription initiation f... 30 7.7 gi|12643510|sp|Q61315|APC_MOUSE Adenomatous polyposis coli ... 30 7.7 gi|1705923|sp|P47597|CLPB_MYCGE Chaperone clpB 30 7.7 gi|33302627|sp|Q15643|TRIPB_HUMAN Thyroid receptor interact... 30 7.7 Alignments
Score E Sequences producing significant alignments: (bits) Value gi|47116932|sp|Q9NQ29|L7L1_HUMAN Putative RNA-binding prote... 484 e-136 gi|47116747|sp|Q9CYI4|L7L1_MOUSE Putative RNA-binding prote... 475 e-134 gi|47116960|sp|Q9Y383|L7L2_HUMAN Putative RNA-binding prote... 409 e-114 gi|47115719|sp|Q7TNC4|L7L2_MOUSE Putative RNA-binding prote... 408 e-113 gi|2496831|sp|Q09217|YP68_CAEEL Hypothetical protein B0495.... 142 1e-33 gi|42558930|sp|Q91Z80|LPA4_RAT Liprin-alpha 4 (Protein tyro... 40 0.013 gi|18202761|sp|Q9CBT5|SMC_MYCLE Chromosome partition protei... 37 0.11 gi|7531285|sp|P51834|SMC_BACSU Chromosome partition protein... 36 0.14 gi|42558942|sp|O75334|LPA2_HUMAN Liprin-alpha 2 (Protein ty... 36 0.18 gi|42558981|sp|Q8BSS9|LIPA2_MOUSE Liprin-alpha 2 (Protein t... 36 0.18 gi|20178336|sp|P21107|TPM3_MOUSE Tropomyosin alpha 3 chain ... 35 0.24 gi|20978622|sp|Q96YR5|RAD50_SULTO DNA double-strand break r... 35 0.24 gi|42558969|sp|Q13136|LPA1_HUMAN Liprin-alpha 1 (Protein ty... 35 0.41 gi|136085|sp|P06753|TPM3_HUMAN Tropomyosin alpha 3 chain (T... 35 0.41 gi|20141312|sp|O14529|CUTL2_HUMAN Homeobox protein Cux-2 (C... 33 0.91 gi|2493151|sp|Q57675|VATI_METJA V-type ATP synthase subunit... 33 1.2 gi|42558938|sp|Q8TD31|HCR_HUMAN Alpha helical coiled-coil r... 33 1.5 gi|42558936|sp|Q8HZ60|HCR_PANTR Alpha helical coiled-coil r... 33 1.5 gi|30173386|sp|Q9NTJ3|SMC4_HUMAN Structural maintenance of ... 33 1.5 gi|42558933|sp|Q8HZ57|HCR_PANPA Alpha helical coiled-coil r... 33 1.5 gi|42558934|sp|Q8HZ58|HCR_PONPY Alpha helical coiled-coil r... 33 1.5 gi|29336591|sp|O93308|SMC1A_XENLA Structural maintenance of... 33 1.5 gi|126663|sp|P12379|M24_STRPY M protein, serotype 24 precursor 32 2.0 gi|17380300|sp|Q10970|SMC_MYCTU Chromosome partition protei... 32 2.0 gi|1708962|sp|P54576|MCPC_BACSU Methyl-accepting chemotaxis... 32 2.0 gi|29839607|sp|Q9BT49|THAP7_HUMAN THAP domain protein 7 32 2.0 gi|25452884|sp|Q9KKF0|CH60_CLODI 60 kDa chaperonin (Protein... 32 2.0 gi|399227|sp|Q02224|CENPE_HUMAN Centromeric protein E (CENP... 32 2.6 gi|42558941|sp|O75145|LPA3_HUMAN Liprin-alpha 3 (Protein ty... 32 2.6 gi|126366|sp|P07942|LMB1_HUMAN Laminin beta-1 chain precurs... 32 2.6 gi|1346921|sp|P22290|PVDR_PLAVS Duffy receptor precursor (E... 32 2.6 gi|51338816|sp|Q99323|MYSN_DROME Myosin heavy chain, non-mu... 32 2.6 gi|42558929|sp|Q91Z79|LIPA3_RAT Liprin-alpha 3 (Protein tyr... 32 2.6 gi|30580382|sp|Q9VJE5|C190_DROME Restin homolog (Cytoplasmi... 32 3.4 gi|59797783|sp|Q6YR94|CH60_ONYPE 60 kDa chaperonin (Protein... 32 3.4 gi|42558935|sp|Q8HZ59|HCR_GORGO Alpha helical coiled-coil r... 32 3.4 gi|11386837|sp|Q9KDV4|GAL1_BACHD Galactokinase (Galactose k... 32 3.4 gi|266596|sp|P29616|MYSC_CHICK Myosin heavy chain, cardiac ... 32 3.4 gi|29839577|sp|Q8VCZ3|THA7_MOUSE THAP domain protein 7 31 4.5 gi|3914084|sp|P94545|MUTS2_BACSU MutS2 protein 31 4.5 gi|2493733|sp|P75247|CLPB_MYCPN ClpB protein 31 4.5 gi|29336622|sp|Q14683|SMC1A_HUMAN Structural maintenance of... 31 5.9 gi|126367|sp|P02469|LMB1_MOUSE Laminin beta-1 chain precurs... 31 5.9 gi|29336527|sp|Q9Z1M9|SMC1A_RAT Structural maintenance of c... 31 5.9 gi|60392985|sp|P70388|RAD50_MOUSE DNA repair protein RAD50 ... 31 5.9 gi|41018047|sp|Q8EWX0|RPOC_MYCPE DNA-directed RNA polymeras... 31 5.9 gi|3043372|sp|P11055|MYH3_HUMAN Myosin heavy chain, fast sk... 31 5.9 gi|54036459|sp|Q6CDX0|SMI1_YARLI KNR4/SMI1 homolog 31 5.9 gi|29336595|sp|O97593|SMC1A_BOVIN Structural maintenance of... 31 5.9 gi|29336930|sp|Q9CU62|SMC1A_MOUSE Structural maintenance of... 31 5.9 gi|2506362|sp|P15042|DNLJ_ECOLI DNA ligase (Polydeoxyribonu... 31 5.9 gi|27924000|sp|P51123|TAF1_DROME Transcription initiation f... 30 7.7 gi|12643510|sp|Q61315|APC_MOUSE Adenomatous polyposis coli ... 30 7.7 gi|1705923|sp|P47597|CLPB_MYCGE Chaperone clpB 30 7.7 gi|33302627|sp|Q15643|TRIPB_HUMAN Thyroid receptor interact... 30 7.7
>gi|47116932|sp|Q9NQ29|L7L1_HUMAN Putative RNA-binding protein Luc7-like 1 (SR+89) (Putative SR protein LUC7B1) Length = 371 Score = 484 bits (1247), Expect = e-136 Identities = 259/371 (69%), Positives = 259/371 (69%) Query: 1 MSAQAQMRALLDQLMGTARDGDETRQRVKFTDDRVCKSHLLDCCPHDILAGTRMDLGECT 60 MSAQAQMRALLDQLMGTARDGDETRQRVKFTDDRVCKSHLLDCCPHDILAGTRMDLGECT Sbjct: 1 MSAQAQMRALLDQLMGTARDGDETRQRVKFTDDRVCKSHLLDCCPHDILAGTRMDLGECT 60 Query: 61 KIHDLALRADYEIASKERDLFFELDAMDHLESFIAECDRRTELAKKRLAETQEEISAEVS 120 KIHDLALRADYEIASKERDLFFELDAMDHLESFIAECDRRTELAKKRLAETQEEISAEVS Sbjct: 61 KIHDLALRADYEIASKERDLFFELDAMDHLESFIAECDRRTELAKKRLAETQEEISAEVS 120 Query: 121 AKAEKVHELNEEIGKLLAKAEQLGAEGNVDESQKILMXXXXXXXXXXXXXXXYRNSMPAS 180 AKAEKVHELNEEIGKLLAKAEQLGAEGNVDESQKILM YRNSMPAS Sbjct: 121 AKAEKVHELNEEIGKLLAKAEQLGAEGNVDESQKILMEVEKVRAKKKEAEEEYRNSMPAS 180 Query: 181 SFQQQKLRVCEVCSAYLGLHDNDRRLADHFGGKLHLGFIQIREKLDQLRKTVAEKQEKRN 240 SFQQQKLRVCEVCSAYLGLHDNDRRLADHFGGKLHLGFIQIREKLDQLRKTVAEKQEKRN Sbjct: 181 SFQQQKLRVCEVCSAYLGLHDNDRRLADHFGGKLHLGFIQIREKLDQLRKTVAEKQEKRN 240 Query: 241 QDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 300 QD Sbjct: 241 QDRLRRREEREREERLSRRSGSRTRDRRRSRSRDRRRRRSRSTSRERRKLSRSRSRDRHR 300 Query: 301 XXXXXXXXXXXXXXXXXXXXXAKYKFXXXXXXXXXXXXXXXXXXGPPDWRLESSNGKMAS 360 AKYKF GPPDWRLESSNGKMAS Sbjct: 301 RHRSRSRSHSRGHRRASRDRSAKYKFSRERASREESWESGRSERGPPDWRLESSNGKMAS 360 Query: 361 RRSEEKEAGEI 371 RRSEEKEAGEI Sbjct: 361 RRSEEKEAGEI 371
>gi|47116747|sp|Q9CYI4|L7L1_MOUSE Putative RNA-binding protein Luc7-like 1 Length = 371 Score = 475 bits (1222), Expect = e-134 Identities = 255/371 (68%), Positives = 256/371 (69%) Query: 1 MSAQAQMRALLDQLMGTARDGDETRQRVKFTDDRVCKSHLLDCCPHDILAGTRMDLGECT 60 MSAQAQMRALLDQLMGTARDGDETRQRVKFTDDRVCKSHLLDCCPHDILAGTRMDLGECT Sbjct: 1 MSAQAQMRALLDQLMGTARDGDETRQRVKFTDDRVCKSHLLDCCPHDILAGTRMDLGECT 60 Query: 61 KIHDLALRADYEIASKERDLFFELDAMDHLESFIAECDRRTELAKKRLAETQEEISAEVS 120 KIHDLALRADYEIASKERDLFFELDAMDHLESFIAECDRRTELAKKRLAETQEEISAEVS Sbjct: 61 KIHDLALRADYEIASKERDLFFELDAMDHLESFIAECDRRTELAKKRLAETQEEISAEVS 120 Query: 121 AKAEKVHELNEEIGKLLAKAEQLGAEGNVDESQKILMXXXXXXXXXXXXXXXYRNSMPAS 180 AKAEKVHELNEEIGKLLAKAEQLGAEGNVDESQKILM YRNSMPAS Sbjct: 121 AKAEKVHELNEEIGKLLAKAEQLGAEGNVDESQKILMEVEKVRAKKKEAEEEYRNSMPAS 180 Query: 181 SFQQQKLRVCEVCSAYLGLHDNDRRLADHFGGKLHLGFIQIREKLDQLRKTVAEKQEKRN 240 SFQQQKLRVCEVCSAYLGLHDNDRRLADHFGGKLHLGFIQIREKLDQLRKTVAEKQEKRN Sbjct: 181 SFQQQKLRVCEVCSAYLGLHDNDRRLADHFGGKLHLGFIQIREKLDQLRKTVAEKQEKRN 240 Query: 241 QDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 300 QD Sbjct: 241 QDRLRRREEREREERLGRRSGSRTRDRRRSRSRDRRRRRSRSTSRERRKFSRSRSRDRYR 300 Query: 301 XXXXXXXXXXXXXXXXXXXXXAKYKFXXXXXXXXXXXXXXXXXXGPPDWRLESSNGKMAS 360 KYKF GP DWRLE+SNGK AS Sbjct: 301 RHRSRSRSHSRGHRRASRDRSTKYKFSRERSLREESWEYGRNERGPTDWRLENSNGKTAS 360 Query: 361 RRSEEKEAGEI 371 RRSEEKEAGEI Sbjct: 361 RRSEEKEAGEI 371
>gi|47116960|sp|Q9Y383|L7L2_HUMAN Putative RNA-binding protein Luc7-like 2 (CGI-59) (CGI-74) Length = 392 Score = 409 bits (1052), Expect = e-114 Identities = 198/242 (81%), Positives = 221/242 (91%) Query: 1 MSAQAQMRALLDQLMGTARDGDETRQRVKFTDDRVCKSHLLDCCPHDILAGTRMDLGECT 60 MSAQAQMRA+LDQLMGT+RDGD TRQR+KF+DDRVCKSHLL+CCPHD+L+GTRMDLGEC Sbjct: 1 MSAQAQMRAMLDQLMGTSRDGDTTRQRIKFSDDRVCKSHLLNCCPHDVLSGTRMDLGECL 60 Query: 61 KIHDLALRADYEIASKERDLFFELDAMDHLESFIAECDRRTELAKKRLAETQEEISAEVS 120 K+HDLALRADYEIASKE+D FFELDAMDHL+SFIA+CDRRTE+AKKRLAETQEEISAEV+ Sbjct: 61 KVHDLALRADYEIASKEQDFFFELDAMDHLQSFIADCDRRTEVAKKRLAETQEEISAEVA 120 Query: 121 AKAEKVHELNEEIGKLLAKAEQLGAEGNVDESQKILMXXXXXXXXXXXXXXXYRNSMPAS 180 AKAE+VHELNEEIGKLLAK EQLGAEGNV+ESQK++ YRNSMPAS Sbjct: 121 AKAERVHELNEEIGKLLAKVEQLGAEGNVEESQKVMDEVEKARAKKREAEEVYRNSMPAS 180 Query: 181 SFQQQKLRVCEVCSAYLGLHDNDRRLADHFGGKLHLGFIQIREKLDQLRKTVAEKQEKRN 240 SFQQQKLRVCEVCSAYLGLHDNDRRLADHFGGKLHLGFI+IREKL++L++ VAEKQEKRN Sbjct: 181 SFQQQKLRVCEVCSAYLGLHDNDRRLADHFGGKLHLGFIEIREKLEELKRVVAEKQEKRN 240 Query: 241 QD 242 Q+ Sbjct: 241 QE 242
>gi|47115719|sp|Q7TNC4|L7L2_MOUSE Putative RNA-binding protein Luc7-like 2 (CGI-74 homolog) Length = 392 Score = 408 bits (1049), Expect = e-113 Identities = 197/242 (81%), Positives = 221/242 (91%) Query: 1 MSAQAQMRALLDQLMGTARDGDETRQRVKFTDDRVCKSHLLDCCPHDILAGTRMDLGECT 60 MSAQAQMRA+LDQLMGT+RDGD TRQR+KF+DDRVCKSHLL+CCPHD+L+GTRMDLGEC Sbjct: 1 MSAQAQMRAMLDQLMGTSRDGDTTRQRIKFSDDRVCKSHLLNCCPHDVLSGTRMDLGECL 60 Query: 61 KIHDLALRADYEIASKERDLFFELDAMDHLESFIAECDRRTELAKKRLAETQEEISAEVS 120 K+HDLALRADYEIASKE+D FFELDAMDHL+SFIA+CDRRTE++KKRLAETQEEISAEV+ Sbjct: 61 KVHDLALRADYEIASKEQDFFFELDAMDHLQSFIADCDRRTEVSKKRLAETQEEISAEVA 120 Query: 121 AKAEKVHELNEEIGKLLAKAEQLGAEGNVDESQKILMXXXXXXXXXXXXXXXYRNSMPAS 180 AKAE+VHELNEEIGKLLAK EQLGAEGNV+ESQK++ YRNSMPAS Sbjct: 121 AKAERVHELNEEIGKLLAKVEQLGAEGNVEESQKVMDEVEKARAKKREAEEVYRNSMPAS 180 Query: 181 SFQQQKLRVCEVCSAYLGLHDNDRRLADHFGGKLHLGFIQIREKLDQLRKTVAEKQEKRN 240 SFQQQKLRVCEVCSAYLGLHDNDRRLADHFGGKLHLGFI+IREKL++L++ VAEKQEKRN Sbjct: 181 SFQQQKLRVCEVCSAYLGLHDNDRRLADHFGGKLHLGFIEIREKLEELKRVVAEKQEKRN 240 Query: 241 QD 242 Q+ Sbjct: 241 QE 242
>gi|2496831|sp|Q09217|YP68_CAEEL Hypothetical protein B0495.8 in chromosome II Length = 313 Score = 142 bits (358), Expect = 1e-33 Identities = 76/241 (31%), Positives = 140/241 (58%), Gaps = 7/241 (2%) Query: 6 QMRALLDQLMGTARDGDETRQRVKFTDDRVCKSHLLDCCPHDILAGTRM-DLGECTKIHD 64 QMR ++ QLMG+ ++ + + F VC++ LL CPHD++ +R+ ++ C K+H+ Sbjct: 4 QMRDMIAQLMGSQHVDNKEKPSMPFDHHSVCRAFLLGVCPHDMVPDSRLQNVVSCRKVHE 63 Query: 65 LALRADYEIASKERDLFFELDAMDHLESFIAECDRRTELAKKRLAE-TQEEISAEVSAKA 123 A +ADYE A KE+D F+++DA + +E + D +++L + + + S +KA Sbjct: 64 PAHKADYERAQKEKDHFYDVDAFEIIEHAVHLVDIEIAKVREKLEDDVKTQTSQAADSKA 123 Query: 124 EKVHELNEEIGKLLAKAEQLGAEGNVDESQKI---LMXXXXXXXXXXXXXXXYRNSMPAS 180 ++V E+ E+I K + E+LG EG ++ES K+ + + + P S Sbjct: 124 KQVAEIEEKIAKNVDDIEKLGNEGKIEESMKLHKYVEELREKIQEIEDSQTEVKTAGPGS 183 Query: 181 SFQQQKLRVCEVCSAYLGLHDNDRRLADHFGGKLHLGFIQIREKLDQLRKTVAEKQEKRN 240 + KLRVCE C A L + D++ R+ADH+ GK+H+G ++ RE ++++T+ E++++R Sbjct: 184 N--SAKLRVCEDCGAQLNITDHESRIADHYNGKMHIGMVETRETYLKMKETIDERRKERE 241 Query: 241 Q 241 + Sbjct: 242 E 242
>gi|42558930|sp|Q91Z80|LPA4_RAT Liprin-alpha 4 (Protein tyrosine phosphatase receptor type f polypeptide-interacting protein alpha 4) (PTPRF-interacting protein alpha 4) Length = 1043 Score = 39.7 bits (91), Expect = 0.013 Identities = 39/172 (22%), Positives = 74/172 (43%), Gaps = 12/172 (6%) Query: 58 ECTKIHDLALRADYEIASKERDLFFELDAMDHLESFIAECDRRTELAKKRLAETQEEISA 117 E T IHDL + + E+A+KE + HL+ + +++ + ++ AET E+ A Sbjct: 169 EATSIHDLNDKLENELANKESLHRQCEEKARHLQELLEVAEQKLQQTMRK-AETLPEVEA 227 Query: 118 EVSAKAEKVHELNEEIGKLLAKAEQLGAEGNVDESQKILMXXXXXXXXXXXXXXXYRNSM 177 E+S + + + E G + QL EG ++E + L +++ Sbjct: 228 ELSQRIAALTKAEERHGNIEEHLRQL--EGQLEEKNQELARVRQREKMNEDHNKRLSDTV 285 Query: 178 PASSFQQQKLRVCEVCSAYLGLHDNDRRLADHFGGKLHLGFIQIREKLDQLR 229 R+ + L LH +R A G+L ++R+++DQL+ Sbjct: 286 D---------RLLSESNERLQLHLKERMAALEEKGRLSEEIEKLRQEVDQLK 328
>gi|18202761|sp|Q9CBT5|SMC_MYCLE Chromosome partition protein smc Length = 1203 Score = 36.6 bits (83), Expect = 0.11 Identities = 36/115 (31%), Positives = 58/115 (50%), Gaps = 18/115 (15%) Query: 53 RMDLGECTKIHDLALR------ADYEIASKERDLFFELDAMDHLESFIAECDRRTELAKK 106 +M++ E + +LA+ A E+A +ER E D HLE+ AE DRR LA Sbjct: 335 QMEVAEQQLLAELAVARTQLEAARAELADRERHAV-EADKA-HLEAVRAEADRREGLA-- 390 Query: 107 RLAETQEEISAEVSAKAEKVHELNEEIGKLLAKAEQLGAE--------GNVDESQ 153 LA E + A + + + V L+E I ++ A+ +Q+ AE G +D+S+ Sbjct: 391 LLAGQVETMRARIESIDDSVARLSERIEEVTARTQQILAEFETVQGRVGELDQSE 445
>gi|7531285|sp|P51834|SMC_BACSU Chromosome partition protein smc Length = 1186 Score = 36.2 bits (82), Expect = 0.14 Identities = 20/66 (30%), Positives = 38/66 (57%), Gaps = 7/66 (10%) Query: 71 YEIASKERDLFFELDAMDHLESFIAECDRRTELAKKRLAETQEEISAEVSAKAEKVHELN 130 YE+ E+++ L+ D +S ++E D ++ K++L E E+SA +EK+ +L Sbjct: 736 YELQVAEKNINTHLELYDQEKSALSESDEERKVRKRKLEE-------ELSAVSEKMKQLE 788 Query: 131 EEIGKL 136 E+I +L Sbjct: 789 EDIDRL 794
>gi|42558942|sp|O75334|LPA2_HUMAN Liprin-alpha 2 (Protein tyrosine phosphatase receptor type f polypeptide-interacting protein alpha 2) (PTPRF-interacting protein alpha 2) Length = 1257 Score = 35.8 bits (81), Expect = 0.18 Identities = 29/102 (28%), Positives = 50/102 (49%), Gaps = 20/102 (19%) Query: 58 ECTKIHDLALRADYEIASKERDLFFELDAMDHLESFIAECDRRTELAKKRLAETQEEISA 117 E T IHD+ + + E+A+KE + +E + R ELA+++L +T Sbjct: 353 ESTSIHDMNDKLENELANKEA-------ILRQMEEKNRQLQERLELAEEKLQQTMR---- 401 Query: 118 EVSAKAEKVHELNEEIGKLLA---KAEQLGAEGNVDESQKIL 156 KAE + E+ E+ + +A KAE+ GN++E + L Sbjct: 402 ----KAETLPEVEAELAQRIAALTKAEE--THGNIEERMRHL 437
>gi|42558981|sp|Q8BSS9|LIPA2_MOUSE Liprin-alpha 2 (Protein tyrosine phosphatase receptor type f polypeptide-interacting protein alpha 2) (PTPRF-interacting protein alpha 2) Length = 1257 Score = 35.8 bits (81), Expect = 0.18 Identities = 28/105 (26%), Positives = 50/105 (47%), Gaps = 15/105 (14%) Query: 58 ECTKIHDLALRADYEIASKERDLFFELDAMDHLESFIAECDRRTELAKKRL------AET 111 E T IHD+ + + E+A+KE + +E + R ELA+++L AET Sbjct: 353 ESTSIHDMNDKLENELANKEA-------ILRQMEEKNRQLQERLELAEQKLQQTMRKAET 405 Query: 112 QEEISAEVSAKAEKVHELNEEIGKLLAKAEQLGAEGNVDESQKIL 156 E+ AE++ + + + E G + + L EG ++E + L Sbjct: 406 LPEVEAELAQRIAALTKAEERHGNIEERMRHL--EGQLEEKNQEL 448
>gi|20178336|sp|P21107|TPM3_MOUSE Tropomyosin alpha 3 chain (Tropomyosin 3) (Tropomyosin gamma) Length = 284 Score = 35.4 bits (80), Expect = 0.24 Identities = 25/121 (20%), Positives = 55/121 (45%), Gaps = 5/121 (4%) Query: 37 KSHLLDCCPHDILAGTRMDLGECTKIHDLALRADYEIASKERDLFFELDAMDHLESFIAE 96 K +L ++L E + + + + + E+A+ ++ L D +D + + Sbjct: 7 KMQMLKLDKENVLDRAEQAEAEQKQAEERSKQLEDELATMQKKLKGTEDELDKYSEALKD 66 Query: 97 CDRRTELAKKRLAETQEEISA---EVSAKAEKVHELNEEIGKLLAKAEQLGAEGNVDESQ 153 + ELA+K+ A+ + E+++ + E++ E + L K E+ AE DES+ Sbjct: 67 AQEKLELAEKKAADAEAEVASLNRRIQLVEEELDRAQERLATALQKLEE--AEKAADESE 124 Query: 154 K 154 + Sbjct: 125 R 125
>gi|20978622|sp|Q96YR5|RAD50_SULTO DNA double-strand break repair rad50 ATPase Length = 879 Score = 35.4 bits (80), Expect = 0.24 Identities = 38/160 (23%), Positives = 68/160 (42%), Gaps = 38/160 (23%) Query: 72 EIASKERDLFFELDAMDHLESFIAECDRRTELAKKRLAETQEEISAEVSAKAEKVHELNE 131 E+ KER D + L+ ++E + ++++ ++++ EE+ E+ E ++ N+ Sbjct: 349 ELEEKERKFNSLSDRLKSLKIKLSEIE--SKISNRKISINIEELDKELQKLNEDLNNKNQ 406 Query: 132 EIGKLLAKAEQLG-AEGNVDESQKILMXXXXXXXXXXXXXXXYRNSMPASSFQQQKLRVC 190 E KL A QLG +G ++E K+L + Q K VC Sbjct: 407 EREKL---ASQLGEIKGRIEELNKLL-----------------------GNLNQVKGNVC 440 Query: 191 EVCSAYLGLHDNDRRLADHFGGKLHLGFIQIREKLDQLRK 230 VC R L+D K+ I+ ++LD+L K Sbjct: 441 PVCG---------RELSDDHKRKIQNEIIEKLKELDELNK 471
>gi|42558969|sp|Q13136|LPA1_HUMAN Liprin-alpha 1 (Protein tyrosine phosphatase receptor type f polypeptide-interacting protein alpha 1) (PTPRF-interacting protein alpha 1) (LAR-interacting protein 1) (LIP.1) Length = 1202 Score = 34.7 bits (78), Expect = 0.41 Identities = 27/96 (28%), Positives = 46/96 (47%), Gaps = 15/96 (15%) Query: 58 ECTKIHDLALRADYEIASKERDLFFELDAMD-HLESFIAECDRRTELAKKRL------AE 110 E T +HDL + + EIA+K D+M E + R ELA+++L AE Sbjct: 335 EATSVHDLNDKLENEIANK--------DSMHRQTEDKNRQLQERLELAEQKLQQTLRKAE 386 Query: 111 TQEEISAEVSAKAEKVHELNEEIGKLLAKAEQLGAE 146 T E+ AE++ + + + E G + + Q+ A+ Sbjct: 387 TLPEVEAELAQRVAALSKAEERHGNIEERLRQMEAQ 422
>gi|136085|sp|P06753|TPM3_HUMAN Tropomyosin alpha 3 chain (Tropomyosin 3) (Tropomyosin gamma) Length = 284 Score = 34.7 bits (78), Expect = 0.41 Identities = 21/86 (24%), Positives = 43/86 (50%), Gaps = 5/86 (5%) Query: 72 EIASKERDLFFELDAMDHLESFIAECDRRTELAKKRLAETQEEISA---EVSAKAEKVHE 128 E+A+ ++ L D +D + + + ELA+K+ A+ + E+++ + E++ Sbjct: 42 ELAAMQKKLKGTEDELDKYSEALKDAQEKLELAEKKAADAEAEVASLNRRIQLVEEELDR 101 Query: 129 LNEEIGKLLAKAEQLGAEGNVDESQK 154 E + L K E+ AE DES++ Sbjct: 102 AQERLATALQKLEE--AEKAADESER 125
>gi|20141312|sp|O14529|CUTL2_HUMAN Homeobox protein Cux-2 (Cut-like 2) Length = 1505 Score = 33.5 bits (75), Expect = 0.91 Identities = 25/115 (21%), Positives = 61/115 (53%), Gaps = 13/115 (11%) Query: 41 LDCCPHDILAGTRMDLGECTKIHDLALRADYEIASKERDLFFELDAMDHLESFIAECDRR 100 L CC +G +++ C+ R + +ASK+R++ L + HL+S + E + Sbjct: 295 LACCSPQGPSGDKVNFTLCS-----GPRLEAALASKDREILRLLKDVQHLQSSLQELE-- 347 Query: 101 TELAKKRLAETQEEISAEVSAKAEKVHELNEEIGKLLAKAEQLGAEGNVDESQKI 155 E + ++A+ + ++ +AK+E + +L E++ + + E++ E ++ ++ K+ Sbjct: 348 -EASANQIADLERQL----TAKSEAIEKLEEKL-QAQSDYEEIKTELSILKAMKL 396
>gi|2493151|sp|Q57675|VATI_METJA V-type ATP synthase subunit I (V-type ATPase subunit I) Length = 695 Score = 33.1 bits (74), Expect = 1.2 Identities = 28/131 (21%), Positives = 57/131 (43%), Gaps = 19/131 (14%) Query: 114 EISAEVSAKAEKVHELNEEIGKLLAKAEQLGAEGNVDESQKILMXXXXXXXXXXXXXXXY 173 EIS EV AE++ EL+ + KLL EQ+ ++ K L Sbjct: 120 EISKEVDGPAERLSELDNKKSKLLQLKEQISYLKGLEFDLKYLGSGEYVFIGA------- 172 Query: 174 RNSMPASSFQQQKLRVCEVCSAYLGL-----HDNDRRLADHFGGKLHLGFIQIREKLDQL 228 S+P + K + +V Y+G+ + D+++ ++ + F+ ++EKL+ + Sbjct: 173 -GSVPKEKLGELKAELDKVADGYIGIFSGSEFEKDKKI------RVPIVFVTLKEKLENV 225 Query: 229 RKTVAEKQEKR 239 + + + +R Sbjct: 226 LSEIRKFEFER 236
>gi|42558938|sp|Q8TD31|HCR_HUMAN Alpha helical coiled-coil rod protein (Putative gene 8 protein) (Pg8) Length = 782 Score = 32.7 bits (73), Expect = 1.5 Identities = 24/84 (28%), Positives = 44/84 (52%), Gaps = 11/84 (13%) Query: 56 LGECTKIHDLALRADYEIASKERDLFFELDAMDHLESF----IAECDRRTELAKKRLAET 111 L T+ H+ AL + + SK L L +++ + +AE R EL +K+L++T Sbjct: 179 LSSLTQAHEEALSS---LTSKAEGLEKSLSSLETRRAGEAKELAEAQREAELLRKQLSKT 235 Query: 112 QEEISAEVSAKAEKVHELNEEIGK 135 QE++ A+V+ V L + +G+ Sbjct: 236 QEDLEAQVTL----VENLRKYVGE 255
>gi|42558936|sp|Q8HZ60|HCR_PANTR Alpha helical coiled-coil rod protein Length = 782 Score = 32.7 bits (73), Expect = 1.5 Identities = 24/84 (28%), Positives = 44/84 (52%), Gaps = 11/84 (13%) Query: 56 LGECTKIHDLALRADYEIASKERDLFFELDAMDHLESF----IAECDRRTELAKKRLAET 111 L T+ H+ AL + + SK L L +++ + +AE R EL +K+L++T Sbjct: 179 LSSLTQAHEEALSS---LTSKAEGLEKSLSSLETRRAGEAKELAEAQREAELLRKQLSKT 235 Query: 112 QEEISAEVSAKAEKVHELNEEIGK 135 QE++ A+V+ V L + +G+ Sbjct: 236 QEDLEAQVTL----VENLRKYVGE 255
>gi|30173386|sp|Q9NTJ3|SMC4_HUMAN Structural maintenance of chromosomes 4-like 1 protein (Chromosome-associated polypeptide C) (hCAP-C) (XCAP-C homolog) Length = 1288 Score = 32.7 bits (73), Expect = 1.5 Identities = 30/97 (30%), Positives = 46/97 (47%), Gaps = 11/97 (11%) Query: 61 KIHDLALRADYEIASKER---DLFFELDAMDHLESFIAECDRRTELAKKRLAETQEE--- 114 K D LR + EI E+ DL EL + LE AE + T A++ L E Q+E Sbjct: 936 KAQDSVLRTEKEIKDTEKEVDDLTAELKS---LEDKAAEVVKNTNAAEESLPEIQKEHRN 992 Query: 115 ISAEVSAKAEKVHELNEEIGKLLAKAEQLGAEGNVDE 151 + E+ E H L ++ + K EQ+ +G++ E Sbjct: 993 LLQELKVIQENEHALQKDALSIKLKLEQI--DGHIAE 1027
>gi|42558933|sp|Q8HZ57|HCR_PANPA Alpha helical coiled-coil rod protein Length = 782 Score = 32.7 bits (73), Expect = 1.5 Identities = 24/84 (28%), Positives = 44/84 (52%), Gaps = 11/84 (13%) Query: 56 LGECTKIHDLALRADYEIASKERDLFFELDAMDHLESF----IAECDRRTELAKKRLAET 111 L T+ H+ AL + + SK L L +++ + +AE R EL +K+L++T Sbjct: 179 LSSLTQAHEEALSS---LTSKAEGLEKSLSSLETRRAGEAKELAEAQREAELLRKQLSKT 235 Query: 112 QEEISAEVSAKAEKVHELNEEIGK 135 QE++ A+V+ V L + +G+ Sbjct: 236 QEDLEAQVTL----VENLRKYVGE 255
>gi|42558934|sp|Q8HZ58|HCR_PONPY Alpha helical coiled-coil rod protein Length = 782 Score = 32.7 bits (73), Expect = 1.5 Identities = 24/84 (28%), Positives = 44/84 (52%), Gaps = 11/84 (13%) Query: 56 LGECTKIHDLALRADYEIASKERDLFFELDAMDHLESF----IAECDRRTELAKKRLAET 111 L T+ H+ AL + + SK L L +++ + +AE R EL +K+L++T Sbjct: 179 LSSLTQAHEEALSS---LTSKAEGLEKSLSSLETRRAGEAKELAEAQREAELLRKQLSKT 235 Query: 112 QEEISAEVSAKAEKVHELNEEIGK 135 QE++ A+V+ V L + +G+ Sbjct: 236 QEDLEAQVTL----VENLRKYVGE 255
>gi|29336591|sp|O93308|SMC1A_XENLA Structural maintenance of chromosome 1 protein Length = 1232 Score = 32.7 bits (73), Expect = 1.5 Identities = 29/101 (28%), Positives = 50/101 (49%), Gaps = 13/101 (12%) Query: 53 RMDLGECTKIHDLALRADYEIASKERDLFFELDAMDHLESFIAECDRRTELAKKRLAETQ 112 R+DL E K+ A +I K R+L ++ LE +IA + E +K L ET Sbjct: 406 RLDLEERKKVETEA-----KIKQKLRELEENQKRIEKLEEYIATSKQSLE-EQKNLEET- 458 Query: 113 EEISAEVSAKAEKVHELNEEIGKLLAKAEQLGAEGNVDESQ 153 ++ EV ++ E+N E+ +++ EQLG + +D + Sbjct: 459 --LTEEVEMAKRRIDEINSELNQVM---EQLG-DARIDRQE 493
>gi|126663|sp|P12379|M24_STRPY M protein, serotype 24 precursor Length = 539 Score = 32.3 bits (72), Expect = 2.0 Identities = 18/49 (36%), Positives = 26/49 (53%) Query: 90 LESFIAECDRRTELAKKRLAETQEEISAEVSAKAEKVHELNEEIGKLLA 138 LE E + +L +K AE Q ++ AE A EK+ + EE+ KL A Sbjct: 412 LEKLNKELEESKKLTEKEKAELQAKLEAEAKALKEKLAKQAEELAKLRA 460
>gi|17380300|sp|Q10970|SMC_MYCTU Chromosome partition protein smc Length = 1205 Score = 32.3 bits (72), Expect = 2.0 Identities = 29/75 (38%), Positives = 37/75 (49%), Gaps = 4/75 (5%) Query: 72 EIASKERDLFFELDAMDHLESFIAECDRRTELAKKRLAETQEEISAEVSAKAEKVHELNE 131 E+A +ER E D HL + E DRR LA RLA E + A V + E V L+E Sbjct: 363 ELADRERRAA-EADRA-HLAAVREEADRREGLA--RLAGQVETMRARVESIDESVARLSE 418 Query: 132 EIGKLLAKAEQLGAE 146 I +A+Q AE Sbjct: 419 RIEDAAMRAQQTRAE 433
>gi|1708962|sp|P54576|MCPC_BACSU Methyl-accepting chemotaxis protein mcpC Length = 654 Score = 32.3 bits (72), Expect = 2.0 Identities = 21/71 (29%), Positives = 36/71 (50%), Gaps = 5/71 (7%) Query: 85 DAMDHLESFIAECDRRTELAKKRLAETQEEISAEVSAKAEKVHELNEEIGKLLAKAEQLG 144 D + L + AE + R+ ++A+ EE++A S +A +V +NE+ L K Q+ Sbjct: 360 DTSEQLTAVAAETNERSG----QIAKAIEEVAAGASEQASEVETINEKSESLSTKIRQIA 415 Query: 145 AE-GNVDESQK 154 E G + E K Sbjct: 416 EEAGGIKERSK 426
>gi|29839607|sp|Q9BT49|THAP7_HUMAN THAP domain protein 7 Length = 309 Score = 32.3 bits (72), Expect = 2.0 Identities = 16/50 (32%), Positives = 27/50 (54%) Query: 84 LDAMDHLESFIAECDRRTELAKKRLAETQEEISAEVSAKAEKVHELNEEI 133 LDA+D + + C RR + + RL + Q+E + E A+A+ L E + Sbjct: 248 LDALDKAQRQLQACKRREQRLRLRLTKLQQERAREKRAQADARQTLKEHV 297
>gi|25452884|sp|Q9KKF0|CH60_CLODI 60 kDa chaperonin (Protein Cpn60) (groEL protein) Length = 540 Score = 32.3 bits (72), Expect = 2.0 Identities = 23/52 (44%), Positives = 32/52 (61%), Gaps = 8/52 (15%) Query: 105 KKRLAETQEEISAEVSAKAEKVHELNEEIGKLLAKA-EQLGAEG--NVDESQ 153 + R+ ETQE IS S A +EE+GKL+A+A E +G +G V+ESQ Sbjct: 133 QSRIVETQEAISQVASISAG-----DEEVGKLIAEAMEIVGKDGVITVEESQ 179
>gi|399227|sp|Q02224|CENPE_HUMAN Centromeric protein E (CENP-E protein) Length = 2663 Score = 32.0 bits (71), Expect = 2.6 Identities = 23/97 (23%), Positives = 45/97 (46%) Query: 61 KIHDLALRADYEIASKERDLFFELDAMDHLESFIAECDRRTELAKKRLAETQEEISAEVS 120 K+ + EI++ ++DL DA+ + I E R + K ET +++ VS Sbjct: 1739 KLRGIVSEKTNEISNMQKDLEHSNDALKAQDLKIQEELRIAHMHLKEQQETIDKLRGIVS 1798 Query: 121 AKAEKVHELNEEIGKLLAKAEQLGAEGNVDESQKILM 157 K +K+ + +++ AK ++ E +E Q I + Sbjct: 1799 EKTDKLSNMQKDLENSNAKLQEKIQELKANEHQLITL 1835
>gi|42558941|sp|O75145|LPA3_HUMAN Liprin-alpha 3 (Protein tyrosine phosphatase receptor type f polypeptide-interacting protein alpha 3) (PTPRF-interacting protein alpha 3) Length = 1194 Score = 32.0 bits (71), Expect = 2.6 Identities = 21/89 (23%), Positives = 43/89 (48%), Gaps = 1/89 (1%) Query: 58 ECTKIHDLALRADYEIASKERDLFFELDAMDHLESFIAECDRRTELAKKRLAETQEEISA 117 E T +HD + + E+ASKE + L ++ + ++ + ++ AET EI A Sbjct: 318 EATSLHDANDKLENELASKESLYRQSEEKSRQLAEWLDDAKQKLQQTLQK-AETLPEIEA 376 Query: 118 EVSAKAEKVHELNEEIGKLLAKAEQLGAE 146 +++ + +++ E G + QL A+ Sbjct: 377 QLAQRVAALNKAEERHGNFEERLRQLEAQ 405
>gi|126366|sp|P07942|LMB1_HUMAN Laminin beta-1 chain precursor (Laminin B1 chain) Length = 1786 Score = 32.0 bits (71), Expect = 2.6 Identities = 34/156 (21%), Positives = 63/156 (40%), Gaps = 18/156 (11%) Query: 4 QAQMRALLDQLMGTARDGDETRQRVKFTDDRVCKSHLLDCCPHDILAGT--RMDLGE--- 58 Q + LLD+L G + D + + C + C G R D GE Sbjct: 1371 QEEQARLLDELAGKLQSLD-----LSAAAEMTCGTPPGASCSETECGGPNCRTDEGERKC 1425 Query: 59 ----CTKIHDLALRADYEIASKERDLFFELDAMDHLESFIAECDRRTELAKKRLAETQEE 114 C + +A A + ++D+ L ++ L ++E R + AK ++ E+ Sbjct: 1426 GGPGCGGLVTVAHNAWQKAMDLDQDVLSALAEVEQLSKMVSEAKLRADEAK----QSAED 1481 Query: 115 ISAEVSAKAEKVHELNEEIGKLLAKAEQLGAEGNVD 150 I + +A EK+ + NEE+ L+ + + + D Sbjct: 1482 ILLKTNATKEKMDKSNEELRNLIKQIRNFLTQDSAD 1517
>gi|1346921|sp|P22290|PVDR_PLAVS Duffy receptor precursor (Erythrocyte binding protein) Length = 1070 Score = 32.0 bits (71), Expect = 2.6 Identities = 31/147 (21%), Positives = 59/147 (40%), Gaps = 22/147 (14%) Query: 27 RVKFTDDRVCK-SHLLDCCPH------------DILAGTRMDLGECTKIHDLALRADYEI 73 ++ +TD +VCK + C D+L+ + + K+ + Y+I Sbjct: 418 KINYTDKKVCKVPPCQNACKSYDQWITRKKNQWDVLSNKFISVKNAEKVQTAGIVTPYDI 477 Query: 74 ASKERDLF----FELDAMDHLESFIAECDRRTELAKKRLAETQEEISAEVSAKAEKVHEL 129 +E D F FE + ++I C E AKK E + ++A + + Sbjct: 478 LKQELDEFNEVAFENEINKRDGAYIELCVCSVEEAKKNTQEVVTNVDNAAKSQATNSNPI 537 Query: 130 NEEIGKLLAKAEQL---GAEGNVDESQ 153 ++ + +KAE++ GNV+ Q Sbjct: 538 SQPVDS--SKAEKVPGDSTHGNVNSGQ 562
>gi|51338816|sp|Q99323|MYSN_DROME Myosin heavy chain, non-muscle (Zipper protein) (Myosin II) (Non-muscle MHC) Length = 2057 Score = 32.0 bits (71), Expect = 2.6 Identities = 23/68 (33%), Positives = 37/68 (54%), Gaps = 3/68 (4%) Query: 72 EIASKERDLFFELDAMDHLESFIAECDRRTELAKKRLAETQEEISAE--VSAKAEKV-HE 128 ++A +E +L L +D + A + + +LAE QE++ AE AKAEKV + Sbjct: 1168 QLAKREEELTQTLLRIDEESATKATAQKAQRELESQLAEIQEDLEAEKAARAKAEKVRRD 1227 Query: 129 LNEEIGKL 136 L+EE+ L Sbjct: 1228 LSEELEAL 1235
Score = 30.4 bits (67), Expect = 7.7 Identities = 25/97 (25%), Positives = 43/97 (44%), Gaps = 14/97 (14%) Query: 65 LALRADYEIASKERDLFFEL-DAMDHLESFIAECDR---RTELAKKRLAETQEEISAEVS 120 L +A+ ++ K ++L + D H++ + D+ R +L K+ L ET+EE+ E + Sbjct: 1923 LQQKANRKMDKKIKELTMNIEDERRHVDQHKEQMDKLNSRIKLLKRNLDETEEELQKEKT 1982 Query: 121 AK----------AEKVHELNEEIGKLLAKAEQLGAEG 147 K E +N EI L K + G G Sbjct: 1983 QKRKYQRECEDMIESQEAMNREINSLKTKLRRTGGIG 2019
>gi|42558929|sp|Q91Z79|LIPA3_RAT Liprin-alpha 3 (Protein tyrosine phosphatase receptor type f polypeptide-interacting protein alpha 3) (PTPRF-interacting protein alpha 3) Length = 1192 Score = 32.0 bits (71), Expect = 2.6 Identities = 21/89 (23%), Positives = 43/89 (48%), Gaps = 1/89 (1%) Query: 58 ECTKIHDLALRADYEIASKERDLFFELDAMDHLESFIAECDRRTELAKKRLAETQEEISA 117 E T +HD + + E+ASKE + L ++ + ++ + ++ AET EI A Sbjct: 318 EATSLHDANDKLENELASKESLYRQSEEKSRQLAEWLDDAKQKLQQTLQK-AETLPEIEA 376 Query: 118 EVSAKAEKVHELNEEIGKLLAKAEQLGAE 146 +++ + +++ E G + QL A+ Sbjct: 377 QLAQRVAALNKAEERHGNFEERLRQLEAQ 405
>gi|30580382|sp|Q9VJE5|C190_DROME Restin homolog (Cytoplasmic linker protein 190) (Microtubule binding protein 190) (d-CLIP-190) Length = 1690 Score = 31.6 bits (70), Expect = 3.4 Identities = 20/82 (24%), Positives = 45/82 (54%), Gaps = 2/82 (2%) Query: 67 LRADYEIASKERDLFFEL--DAMDHLESFIAECDRRTELAKKRLAETQEEISAEVSAKAE 124 L+A E KE++ + + L+S AE + ++ + +L + Q++ +A ++ Sbjct: 795 LQAALEELKKEKETIIKEKEQELQQLQSKSAESESALKVVQVQLEQLQQQAAASGEEGSK 854 Query: 125 KVHELNEEIGKLLAKAEQLGAE 146 V +L++EI +L ++AE+ +E Sbjct: 855 TVAKLHDEISQLKSQAEETQSE 876
>gi|59797783|sp|Q6YR94|CH60_ONYPE 60 kDa chaperonin (Protein Cpn60) (groEL protein) Length = 536 Score = 31.6 bits (70), Expect = 3.4 Identities = 20/54 (37%), Positives = 36/54 (66%), Gaps = 3/54 (5%) Query: 103 LAKKRLAETQEEISAEVSAKAEKVHELNEEIGKLLAKA-EQLGAEG--NVDESQ 153 +AKK LA++++ + E V ++EIGK++A+A +++G +G NVDES+ Sbjct: 126 VAKKLLAKSKKVDAQEDIQNVAAVSSGSQEIGKIIAQAMQKVGKDGVINVDESK 179
>gi|42558935|sp|Q8HZ59|HCR_GORGO Alpha helical coiled-coil rod protein Length = 782 Score = 31.6 bits (70), Expect = 3.4 Identities = 24/84 (28%), Positives = 43/84 (51%), Gaps = 11/84 (13%) Query: 56 LGECTKIHDLALRADYEIASKERDLFFELDAMDHLESF----IAECDRRTELAKKRLAET 111 L T+ H AL + + SK L L +++ + +AE R EL +K+L++T Sbjct: 179 LSSLTQAHKEALSS---LTSKAEGLEKSLSSLETRRAGEAKELAEAQREAELLRKQLSKT 235 Query: 112 QEEISAEVSAKAEKVHELNEEIGK 135 QE++ A+V+ V L + +G+ Sbjct: 236 QEDLEAQVTL----VENLRKYVGE 255
>gi|11386837|sp|Q9KDV4|GAL1_BACHD Galactokinase (Galactose kinase) Length = 395 Score = 31.6 bits (70), Expect = 3.4 Identities = 15/37 (40%), Positives = 19/37 (51%) Query: 50 AGTRMDLGECTKIHDLALRADYEIASKERDLFFELDA 86 AG GE K L+LR DY++ E D F+L A Sbjct: 294 AGELQTFGELMKASHLSLREDYDVTGVELDTLFDLQA 330
>gi|266596|sp|P29616|MYSC_CHICK Myosin heavy chain, cardiac muscle isoform Length = 1102 Score = 31.6 bits (70), Expect = 3.4 Identities = 23/111 (20%), Positives = 54/111 (48%), Gaps = 10/111 (9%) Query: 55 DLGECTKIHDLALRADYEIASKERDLFFELDAMDH-LESFIAECDRRTELAKKRLAET-- 111 +L E T+ +L + + ++++ L ++ M + +E I EC + AKK + + Sbjct: 871 ELLEATERVNLLHTQNTSLINQKKKLEGDISQMQNEVEESIQECRNAEQKAKKAITDAAM 930 Query: 112 -------QEEISAEVSAKAEKVHELNEEIGKLLAKAEQLGAEGNVDESQKI 155 +++ SA + + + + +++ K L +AEQ+ +G + QK+ Sbjct: 931 MAEELKKEQDTSAHLERMKKNMEQTIKDLQKRLDEAEQIALKGGKKQIQKL 981
>gi|29839577|sp|Q8VCZ3|THA7_MOUSE THAP domain protein 7 Length = 309 Score = 31.2 bits (69), Expect = 4.5 Identities = 15/50 (30%), Positives = 27/50 (54%) Query: 84 LDAMDHLESFIAECDRRTELAKKRLAETQEEISAEVSAKAEKVHELNEEI 133 LDA+D + + C RR + + RL + Q+E + E A+A+ L + + Sbjct: 248 LDALDKTQRQLQACKRREQRLRLRLTKLQQERAREKRAQADARQTLKDHV 297
>gi|3914084|sp|P94545|MUTS2_BACSU MutS2 protein Length = 785 Score = 31.2 bits (69), Expect = 4.5 Identities = 20/67 (29%), Positives = 37/67 (55%), Gaps = 13/67 (19%) Query: 88 DHLESFIAECDRRTELAKKRLAETQEEISAEVSAKAEKVH--------ELNEEIGKLLAK 139 + +++ IA ++ + A++ L+ET+ + +AEK+H ELN + K+L + Sbjct: 517 NEVDTMIASLEQSKKRAEEELSETES-----IRKEAEKLHKELQQQIIELNSKKDKMLEE 571 Query: 140 AEQLGAE 146 AEQ AE Sbjct: 572 AEQQAAE 578
>gi|2493733|sp|P75247|CLPB_MYCPN ClpB protein Length = 715 Score = 31.2 bits (69), Expect = 4.5 Identities = 24/90 (26%), Positives = 42/90 (46%), Gaps = 5/90 (5%) Query: 67 LRADYEIASKERDLFFELDAMDHLESFIAECDRRTELAKKRLAETQEEISAEVSAKAEKV 126 L +Y ++++ HL++ + D EL KKR + T E + + E + Sbjct: 278 LETEYAALKQDKENADNKKKQGHLDNLKQQLD---ELKKKRDSLTAEWKKEKTNF--ESI 332 Query: 127 HELNEEIGKLLAKAEQLGAEGNVDESQKIL 156 ++L +EI L + E EGN + + KIL Sbjct: 333 NKLKKEIEDLQTRLELYQTEGNYEAASKIL 362
>gi|29336622|sp|Q14683|SMC1A_HUMAN Structural maintenance of chromosome 1-like 1 protein (SMC1alpha protein) (SB1.8/DXS423E protein) (Sb1.8) Length = 1233 Score = 30.8 bits (68), Expect = 5.9 Identities = 27/101 (26%), Positives = 47/101 (46%), Gaps = 13/101 (12%) Query: 53 RMDLGECTKIHDLALRADYEIASKERDLFFELDAMDHLESFIAECDRRTELAKKRLAETQ 112 R+DL E K+ A +I K R++ ++ LE +I + E KK E Sbjct: 406 RLDLEERKKVETEA-----KIKQKLREIEENQKRIEKLEEYITTSKQSLEEQKKLEGELT 460 Query: 113 EEISAEVSAKAEKVHELNEEIGKLLAKAEQLGAEGNVDESQ 153 E EV ++ E+N+E+ +++ EQLG + +D + Sbjct: 461 E----EVEMAKRRIDEINKELNQVM---EQLG-DARIDRQE 493
>gi|126367|sp|P02469|LMB1_MOUSE Laminin beta-1 chain precursor (Laminin B1 chain) Length = 1786 Score = 30.8 bits (68), Expect = 5.9 Identities = 17/74 (22%), Positives = 36/74 (48%), Gaps = 4/74 (5%) Query: 77 ERDLFFELDAMDHLESFIAECDRRTELAKKRLAETQEEISAEVSAKAEKVHELNEEIGKL 136 +RD+ L ++ L ++E R + AK + +++ + +A EKV + NE++ L Sbjct: 1448 DRDVLSALAEVEQLSKMVSEAKVRADEAK----QNAQDVLLKTNATKEKVDKSNEDLRNL 1503 Query: 137 LAKAEQLGAEGNVD 150 + + E + D Sbjct: 1504 IKQIRNFLTEDSAD 1517
>gi|29336527|sp|Q9Z1M9|SMC1A_RAT Structural maintenance of chromosome 1-like 1 protein (SMC-protein) Length = 1233 Score = 30.8 bits (68), Expect = 5.9 Identities = 27/101 (26%), Positives = 47/101 (46%), Gaps = 13/101 (12%) Query: 53 RMDLGECTKIHDLALRADYEIASKERDLFFELDAMDHLESFIAECDRRTELAKKRLAETQ 112 R+DL E K+ A +I K R++ ++ LE +I + E KK E Sbjct: 406 RLDLEERKKVETEA-----KIKQKLREIEENQKRIEKLEEYITTSKQSLEEQKKLEGELT 460 Query: 113 EEISAEVSAKAEKVHELNEEIGKLLAKAEQLGAEGNVDESQ 153 E EV ++ E+N+E+ +++ EQLG + +D + Sbjct: 461 E----EVEMAKRRIDEINKELNQVM---EQLG-DARIDRQE 493
>gi|60392985|sp|P70388|RAD50_MOUSE DNA repair protein RAD50 (mRad50) Length = 1312 Score = 30.8 bits (68), Expect = 5.9 Identities = 35/171 (20%), Positives = 68/171 (39%), Gaps = 21/171 (12%) Query: 75 SKERDLFFELDAMDHLESFIAECDRRTELAKKRLAETQ-----EEISAEVSAKAEKVHEL 129 S+ R + EL ++ I E D+ A++ L++ + E + AEV + + +L Sbjct: 455 SELRHVRSELQQLEGSSDRILELDQELTKAERELSKAEKNSSIETLKAEVMSLQNEKADL 514 Query: 130 NEEIGKLLAKAEQLGAEGNVDESQKILMXXXXXXXXXXXXXXXYRNSMPASSFQQQKLRV 189 + + KL + EQL ++L ++ K R Sbjct: 515 DRSLRKLDQEMEQLNHHTTTRTQMEMLTKDKTDKD---------------EQIRKIKSRH 559 Query: 190 CEVCSAYLGLHDNDRRLADHFGGKLHLGFIQIREKLDQLRKTVAEKQEKRN 240 + ++ LG N ++L D K Q R++L +L K +A ++ +N Sbjct: 560 SDELTSLLGYFPNKKQLEDWLHSK-SKEINQTRDRLAKLNKELASAEQNKN 609
>gi|41018047|sp|Q8EWX0|RPOC_MYCPE DNA-directed RNA polymerase beta' chain (RNAP beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1288 Score = 30.8 bits (68), Expect = 5.9 Identities = 27/103 (26%), Positives = 43/103 (41%), Gaps = 16/103 (15%) Query: 61 KIHDLALRADYEIASKERDLFFELDAMDHLESFIAECDRRTELAKKR----LAETQEEIS 116 KI D+ +Y S F++ E + E D++ E KK L E Sbjct: 712 KIKDIGF--EYSTKSATTISAFDVPEYTEKEKYFEETDKKVEEMKKYYQKGLLTDDERYK 769 Query: 117 AEVSAKAEKVHELNEEIGKLLAKAEQL----------GAEGNV 149 VSA + ++++++I KL+ K E L GA GN+ Sbjct: 770 KVVSAWSSVTNQVSKDIEKLIQKPEYLTNSIVIMANSGARGNI 812
>gi|3043372|sp|P11055|MYH3_HUMAN Myosin heavy chain, fast skeletal muscle, embryonic (Muscle embryonic myosin heavy chain) (SMHCE) Length = 1940 Score = 30.8 bits (68), Expect = 5.9 Identities = 23/81 (28%), Positives = 43/81 (53%), Gaps = 9/81 (11%) Query: 75 SKERDLFFELDAMDHLESFIAECDRRTELAKKRLAETQEEISAEVSAKAEKVHELNEEIG 134 +K ++L EL +D IA+ R KK L E ++ ++ A+ +KV+ LN+ Sbjct: 974 NKVKNLTEELSGLDET---IAKLTRE----KKALQEAHQQALDDLQAEEDKVNSLNKTKS 1026 Query: 135 KLLAKAEQLGAEGNVDESQKI 155 KL + E L E ++++ +K+ Sbjct: 1027 KLEQQVEDL--ESSLEQEKKL 1045
>gi|54036459|sp|Q6CDX0|SMI1_YARLI KNR4/SMI1 homolog Length = 713 Score = 30.8 bits (68), Expect = 5.9 Identities = 25/89 (28%), Positives = 42/89 (47%), Gaps = 3/89 (3%) Query: 57 GECTKIHDLALRADYEIASKERDLFFEL-DAMDHLESFIAECDRRTELAKKRLAETQE-- 113 G+ +++ A +A E K + E D L+ + A+K+ AE +E Sbjct: 514 GKEEDVNEAAEKAKVEATEKTKKAAKEAADKEAELKKAAEKAAEEKAKAEKKAAEAREKE 573 Query: 114 EISAEVSAKAEKVHELNEEIGKLLAKAEQ 142 E A+ +AKA++ EE+ K AKAE+ Sbjct: 574 EKEAKAAAKAKEEELKKEEVAKAAAKAEE 602
>gi|29336595|sp|O97593|SMC1A_BOVIN Structural maintenance of chromosome 1-like 1 protein (SMC-protein) Length = 1233 Score = 30.8 bits (68), Expect = 5.9 Identities = 27/101 (26%), Positives = 47/101 (46%), Gaps = 13/101 (12%) Query: 53 RMDLGECTKIHDLALRADYEIASKERDLFFELDAMDHLESFIAECDRRTELAKKRLAETQ 112 R+DL E K+ A +I K R++ ++ LE +I + E KK E Sbjct: 406 RLDLEERKKVETEA-----KIKQKLREIEENQKRIEKLEEYITTSKQSLEEQKKLEGELT 460 Query: 113 EEISAEVSAKAEKVHELNEEIGKLLAKAEQLGAEGNVDESQ 153 E EV ++ E+N+E+ +++ EQLG + +D + Sbjct: 461 E----EVEMAKRRIDEINKELNQVM---EQLG-DARIDRQE 493
>gi|29336930|sp|Q9CU62|SMC1A_MOUSE Structural maintenance of chromosome 1-like 1 protein (SMC1alpha protein) (Chromosome segregation protein SmcB) (Sb1.8) Length = 1233 Score = 30.8 bits (68), Expect = 5.9 Identities = 27/101 (26%), Positives = 47/101 (46%), Gaps = 13/101 (12%) Query: 53 RMDLGECTKIHDLALRADYEIASKERDLFFELDAMDHLESFIAECDRRTELAKKRLAETQ 112 R+DL E K+ A +I K R++ ++ LE +I + E KK E Sbjct: 406 RLDLEERKKVETEA-----KIKQKLREIEENQKRIEKLEEYITTSKQSLEEQKKLEGELT 460 Query: 113 EEISAEVSAKAEKVHELNEEIGKLLAKAEQLGAEGNVDESQ 153 E EV ++ E+N+E+ +++ EQLG + +D + Sbjct: 461 E----EVEMAKRRIDEINKELNQVM---EQLG-DARIDRQE 493
>gi|2506362|sp|P15042|DNLJ_ECOLI DNA ligase (Polydeoxyribonucleotide synthase [NAD+]) Length = 671 Score = 30.8 bits (68), Expect = 5.9 Identities = 20/52 (38%), Positives = 30/52 (57%), Gaps = 2/52 (3%) Query: 104 AKKRLAETQEEISAEVSAKAEKVHELNEEIGKLLAKAEQLGAEGNVDESQKI 155 AK RL E +++ VS K + V E G LAKA++LG E +DE++ + Sbjct: 617 AKARLVELGAKVAGSVSKKTDLVIA-GEAAGSKLAKAQELGIE-VIDEAEML 666
>gi|27924000|sp|P51123|TAF1_DROME Transcription initiation factor TFIID subunit 1 (Transcription initiation factor TFIID 230 kDa subunit) (TAFII-230) (TAFII250) (TBP-associated factor 230 kDa) (p230) Length = 2065 Score = 30.4 bits (67), Expect = 7.7 Identities = 28/100 (28%), Positives = 43/100 (43%), Gaps = 4/100 (4%) Query: 58 ECTKIHDLALRADYEIASKERDLFFELDAMDHLESFIAECDRRTE-LAKKRLAETQEEIS 116 EC +I DL R +AS E E ++ ES + E + E + + TQ Sbjct: 1109 ECQRIFDLQNRV---LASSEVLSTDEAESSASEESDLEELGKNLENMLSNKKTSTQLSRE 1165 Query: 117 AEVSAKAEKVHELNEEIGKLLAKAEQLGAEGNVDESQKIL 156 E + E + +L+EE G GA+G D Q++L Sbjct: 1166 REELERQELLRQLDEEHGGPSGSGGAKGAKGKDDPGQQML 1205
>gi|12643510|sp|Q61315|APC_MOUSE Adenomatous polyposis coli protein (APC protein) (mAPC) Length = 2845 Score = 30.4 bits (67), Expect = 7.7 Identities = 31/171 (18%), Positives = 62/171 (36%), Gaps = 21/171 (12%) Query: 67 LRADYEIASKERDLFF--------ELDAMDHLESFIAECD----------RRTELAKKRL 108 L AD + KE+D ++ +D++ E+F + D R+ A + Sbjct: 142 LLADLDKEEKEKDWYYAQLQNLTKRIDSLPLTENFSLQTDMTRRQLEYEARQIRAAMEEQ 201 Query: 109 AETQEEISAEVSAKAEKVHELNEEIGKLLAKAEQLGAEGNVDESQKILMXXXXXXXXXXX 168 T +++ + ++ ++ ++I ++ + AE + Sbjct: 202 LGTCQDMEKRAQRRIARIQQIEKDILRVRQLLQSQAAEAERSSQSRHDAASHEAGRQHEG 261 Query: 169 XXXXYRNSMPASSFQQQKLRVCEVCSAYL---GLHDNDRRLADHFGGKLHL 216 N+ +SS Q RV ++ L G H RRL H G K+ + Sbjct: 262 HGVAESNTAASSSGQSPATRVDHETASVLSSSGTHSAPRRLTSHLGTKVEM 312
>gi|1705923|sp|P47597|CLPB_MYCGE Chaperone clpB Length = 714 Score = 30.4 bits (67), Expect = 7.7 Identities = 20/90 (22%), Positives = 41/90 (45%), Gaps = 5/90 (5%) Query: 67 LRADYEIASKERDLFFELDAMDHLESFIAECDRRTELAKKRLAETQEEISAEVSAKAEKV 126 L +Y ++++ + ++LE + D + + E ++E A E + Sbjct: 278 LETEYAALKQDKENDNKQSKKEYLEKLKKQLDALKQKRDSLINEWKKE-----KADFENI 332 Query: 127 HELNEEIGKLLAKAEQLGAEGNVDESQKIL 156 ++L +EI + K E +EGN + + KIL Sbjct: 333 NKLKKEIEEFQTKLETYQSEGNYESASKIL 362
>gi|33302627|sp|Q15643|TRIPB_HUMAN Thyroid receptor interacting protein 11 (TRIP-11) (Golgi-associated microtubule-binding protein 210) (GMAP-210) (Trip230) (Clonal evolution related gene on chromosome 14) Length = 1979 Score = 30.4 bits (67), Expect = 7.7 Identities = 19/89 (21%), Positives = 45/89 (50%), Gaps = 4/89 (4%) Query: 55 DLGECTKIHDLALRADYEIASKERDLFFELDAMDHLESFIAECDRRTELAKKRLAETQEE 114 D+ +++HDL L + +KE++L + + L + I E DR+ + A K + +++ Sbjct: 462 DISLDSELHDLRLNLE----AKEQELNQSISEKETLIAEIEELDRQNQEATKHMILIKDQ 517 Query: 115 ISAEVSAKAEKVHELNEEIGKLLAKAEQL 143 +S + + + +L +++ + QL Sbjct: 518 LSKQQNEGDSIISKLKQDLNDEKKRVHQL 546
Database: Non-redundant SwissProt sequences Posted date: Mar 15, 2005 10:11 AM Number of letters in database: 60,490,055 Number of sequences in database: 164,271 Lambda K H 0.317 0.132 0.372 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 5,052,578 Number of Sequences: 164271 Number of extensions: 164594 Number of successful extensions: 664 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 10 Number of HSP's that attempted gapping in prelim test: 653 Number of HSP's gapped (non-prelim): 22 length of query: 371 length of database: 60,490,055 effective HSP length: 111 effective length of query: 260 effective length of database: 42,255,974 effective search space: 10986553240 effective search space used: 10986553240 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 67 (30.4 bits)
