RID=1111165932-12673-121385357985.BLASTQ2, FGENESH (9), GENEid (10):2 exon (s) 223934

BLASTP 2.2.10 [Oct-19-2004]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
RID: 1111165932-12673-121385357985.BLASTQ2
Query= FGENESH (9), GENEid (10):2 exon (s) 223934 - 225589 231 aa, chain - (231 letters)
Database: Non-redundant SwissProt sequences 164,271 sequences; 60,490,055 total letters
If you have any problems or questions with the results of this search
please refer to the BLAST FAQs
Taxonomy reports
Distribution of 173 Blast Hits on the Query Sequence


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|52788238|sp|P20719|HXA5_HUMAN  Homeobox protein Hox-A5 (H...   321   1e-88 
gi|400000|sp|P09067|HXB5_HUMAN  Homeobox protein Hox-B5 (Hox...   205   9e-54 
gi|547692|sp|P17483|HXB4_HUMAN  Homeobox protein Hox-B4 (Hox...   146   6e-36 
gi|232262|sp|Q00444|HXC5_HUMAN  Homeobox protein Hox-C5 (Hox...   144   2e-35 
gi|6166217|sp|Q00056|HXA4_HUMAN  Homeobox protein Hox-A4 (Ho...   142   7e-35 
gi|13124738|sp|P17509|HXB6_HUMAN  Homeobox protein Hox-B6 (H...   140   3e-34 
gi|20141491|sp|P09016|HXD4_HUMAN  Homeobox protein Hox-D4 (H...   139   8e-34 
gi|123279|sp|P09017|HXC4_HUMAN  Homeobox protein Hox-C4 (Hox...   139   8e-34 
gi|17378385|sp|P31267|HXA6_HUMAN  Homeobox protein Hox-A6 (H...   134   3e-32 
gi|20141493|sp|P09630|HXC6_HUMAN  Homeobox protein Hox-C6 (H...   134   3e-32 
gi|3915721|sp|P31268|HXA7_HUMAN  Homeobox protein Hox-A7 (Ho...   133   4e-32 
gi|123255|sp|P09629|HXB7_HUMAN  Homeobox protein Hox-B7 (Hox...   127   4e-30 
gi|13124737|sp|P13378|HXD8_HUMAN  Homeobox protein Hox-D8 (H...   105   1e-23 
gi|123268|sp|P14651|HXB3_HUMAN  Homeobox protein Hox-B3 (Hox...   104   3e-23 
gi|13124745|sp|P31273|HXC8_HUMAN  Homeobox protein Hox-C8 (H...   103   5e-23 
gi|20141506|sp|P17481|HXB8_HUMAN  Homeobox protein Hox-B8 (H...   103   5e-23 
gi|6016293|sp|O43365|HXA3_HUMAN  Homeobox protein Hox-A3 (Ho...   101   2e-22 
gi|6166222|sp|P31249|HXD3_HUMAN  Homeobox protein Hox-D3 (Ho...   101   2e-22 
gi|1708540|sp|P52945|IPF1_HUMAN  Insulin promoter factor-1 (...    98   3e-21 
gi|20141537|sp|P31274|HXC9_HUMAN  Homeobox protein Hox-C9 (H...    89   9e-19 
gi|123270|sp|P14652|HXB2_HUMAN  Homeobox protein Hox-B2 (Hox...    89   9e-19 
gi|6016292|sp|O43364|HXA2_HUMAN  Homeobox protein Hox-A2           89   1e-18 
gi|20141507|sp|P17482|HXB9_HUMAN  Homeobox protein Hox-B9 (H...    88   2e-18 
gi|123286|sp|P28356|HXD9_HUMAN  Homeobox protein Hox-D9 (Hox...    87   6e-18 
gi|13124743|sp|P31260|HXA10_HUMAN  Homeobox protein Hox-A10 ...    86   8e-18 
gi|20141612|sp|Q9NYD6|HXC10_HUMAN  Homeobox protein Hox-C10        86   1e-17 
gi|6166219|sp|P31269|HXA9_HUMAN  Homeobox protein Hox-A9 (Ho...    86   1e-17 
gi|123289|sp|P28358|HXD10_HUMAN  Homeobox protein Hox-D10 (H...    85   2e-17 
gi|27923786|sp|Q9H4S2|GSHI_HUMAN  Homeobox protein GSH-1           85   2e-17 
gi|20138327|sp|Q9BZM3|GSH2_HUMAN  Homeobox protein GSH-2           85   2e-17 
gi|123271|sp|P14653|HXB1_HUMAN  Homeobox protein Hox-B1 (Hox...    83   9e-17 
gi|1345720|sp|P47902|CDX1_HUMAN  Homeobox protein CDX-1 (Cau...    83   9e-17 
gi|45644931|sp|P50219|HLXB9_HUMAN  Homeobox protein HB9            82   1e-16 
gi|20141282|sp|Q99626|CDX2_HUMAN  Homeobox protein CDX-2 (Ca...    82   2e-16 
gi|6166216|sp|P49639|HXA1_HUMAN  Homeobox protein Hox-A1 (Ho...    81   3e-16 
gi|1709078|sp|P50221|MEOX1_HUMAN  Homeobox protein MOX-1 (Me...    81   3e-16 
gi|12230077|sp|Q14549|GBX1_HUMAN  Homeobox protein GBX-1 (Ga...    81   3e-16 
gi|12644308|sp|P52951|GBX2_HUMAN  Homeobox protein GBX-2 (Ga...    79   1e-15 
gi|3023467|sp|O14627|CDX4_HUMAN  Homeobox protein CDX-4 (Cau...    79   1e-15 
gi|17378648|sp|Q9GZZ0|HXD1_HUMAN  Homeobox protein Hox-D1          79   2e-15 
gi|13124744|sp|P31270|HXA11_HUMAN  Homeobox protein Hox-A11 ...    76   1e-14 
gi|1709079|sp|P50222|MEOX2_HUMAN  Homeobox protein MOX-2 (Me...    75   2e-14 
gi|12644203|sp|P31277|HXD11_HUMAN  Homeobox protein Hox-D11 ...    73   7e-14 
gi|3287858|sp|O43248|HXC11_HUMAN  Homeobox protein Hox-C11         70   6e-13 
gi|399982|sp|P31314|TLX1_HUMAN  T-cell leukemia homeobox pro...    69   1e-12 
gi|14194481|sp|Q9HBU1|BARX1_HUMAN  Homeobox protein BarH-like 1    69   1e-12 
gi|12644227|sp|P35452|HXD12_HUMAN  Homeobox protein Hox-D12 ...    68   2e-12 
gi|12231013|sp|Q03828|EVX2_HUMAN  Homeobox even-skipped homo...    68   2e-12 
gi|14917010|sp|Q05925|HME1_HUMAN  Homeobox protein engrailed...    68   3e-12 
gi|21903415|sp|P19622|HME2_HUMAN  Homeobox protein engrailed...    67   4e-12 
gi|23831508|sp|O43711|TLX3_HUMAN  T-cell leukemia homeobox p...    67   5e-12 
gi|1352398|sp|P49640|EVX1_HUMAN  Homeobox even-skipped homol...    67   7e-12 
gi|20532295|sp|Q9UIW0|VAX2_HUMAN  Ventral anterior homeobox 2      65   1e-11 
gi|29336920|sp|Q9BZE3|BARH1_HUMAN  BarH-like 1 homeobox prot...    65   1e-11 
gi|2828197|sp|P31271|HXA13_HUMAN  Homeobox protein Hox-A13 (...    65   1e-11 
gi|20532396|sp|O43763|TLX2_HUMAN  T-cell leukemia homeobox p...    65   2e-11 
gi|13431329|sp|Q9UMQ3|BARX2_HUMAN  Homeobox protein BarH-like 2    64   3e-11 
gi|20141538|sp|P31275|HXC12_HUMAN  Homeobox protein Hox-C12 ...    64   6e-11 
gi|6016210|sp|P78367|NK32_HUMAN  Homeobox protein Nkx-3.2 (B...    63   7e-11 
gi|19862512|sp|Q04743|EMX2_HUMAN  Homeobox protein EMX2 (Emp...    63   7e-11 
gi|47117915|sp|Q9NY43|BARH2_HUMAN  BarH-like 2 homeobox protein    63   7e-11 
gi|50403792|sp|Q92826|HXB13_HUMAN  Homeobox protein Hox-B13        62   1e-10 
gi|547658|sp|Q03014|HHEX_HUMAN  Homeobox protein PRH (Hemato...    62   1e-10 
gi|20141539|sp|P31276|HXC13_HUMAN  Homeobox protein Hox-C13 ...    62   2e-10 
gi|2851475|sp|P35453|HXD13_HUMAN  Homeobox protein Hox-D13 (...    61   3e-10 
gi|57015304|sp|Q04741|EMX1_HUMAN  Homeobox protein EMX1 (Emp...    61   4e-10 
gi|17377578|sp|Q99801|NKX31_HUMAN  Homeobox protein Nkx-3.1        59   1e-09 
gi|23503066|sp|P28360|MSX1_HUMAN  Homeobox protein MSX-1 (Ho...    59   1e-09 
gi|17380297|sp|Q9Y2V3|RX_HUMAN  Retinal homeobox protein Rx ...    59   2e-09 
gi|13959687|sp|P35548|MSX2_HUMAN  Homeobox protein MSX-2 (Ho...    58   2e-09 
gi|27923815|sp|Q8TAU0|NKX23_HUMAN  Homeobox protein Nkx-2.3 ...    58   3e-09 
gi|48428084|sp|Q8N693|ESX1L_HUMAN  Extraembryonic, spermatog...    57   7e-09 
gi|27923733|sp|Q96QS3|ARX_HUMAN  Homeobox protein ARX (Arist...    57   7e-09 
gi|6016211|sp|P78426|NK61_HUMAN  Homeobox protein Nkx-6.1          57   7e-09 
gi|1730095|sp|P52954|LBX1_HUMAN  Transcription factor LBX1         57   7e-09 
gi|3913487|sp|O60479|DLX3_HUMAN  Homeobox protein DLX-3            56   9e-09 
gi|2506529|sp|Q07687|DLX2_HUMAN  Homeobox protein DLX-2            56   9e-09 
gi|2833256|sp|Q14774|HLX1_HUMAN  Homeobox protein HLX1 (Home...    56   9e-09 
gi|3024482|sp|P78337|PITX1_HUMAN  Pituitary homeobox 1 (Hind...    56   1e-08 
gi|6016205|sp|O95096|NKX22_HUMAN  Homeobox protein Nkx-2.2 (...    55   2e-08 
gi|6016208|sp|O15522|NK28_HUMAN  Homeobox protein Nkx-2.8 (H...    55   2e-08 
gi|1708211|sp|P52952|NK25_HUMAN  Homeobox protein Nkx-2.5 (H...    55   3e-08 
gi|13626112|sp|Q9H161|ALX4_HUMAN  Homeobox protein aristales...    55   3e-08 
gi|6174907|sp|Q99697|PITX2_HUMAN  Pituitary homeobox 2 (RIEG...    54   3e-08 
gi|6174889|sp|P26367|PAX6_HUMAN  Paired box protein Pax-6 (O...    54   4e-08 
gi|6093723|sp|O75364|PITX3_HUMAN  Pituitary homeobox 3 (Home...    54   6e-08 
gi|12644329|sp|P56178|DLX5_HUMAN  Homeobox protein DLX-5           54   6e-08 
gi|3914276|sp|O43316|PAX4_HUMAN  Paired box protein Pax-4          53   7e-08 
gi|8247951|sp|P23759|PAX7_HUMAN  Paired box protein Pax-7 (H...    52   1e-07 
gi|3023579|sp|Q15699|CRT1_HUMAN  Cartilage homeoprotein 1 (C...    52   1e-07 
gi|38605720|sp|P56177|DLX1_HUMAN  Homeobox protein DLX-1           52   1e-07 
gi|12644330|sp|P56179|DLX6_HUMAN  Homeobox protein DLX-6           52   2e-07 
gi|17374365|sp|P58304|CHX10_HUMAN  Homeobox protein CHX10 (C...    52   2e-07 
gi|12230168|sp|Q9UBX0|HESX1_HUMAN  Homeobox expressed in ES ...    52   2e-07 
gi|8134644|sp|Q99453|PHX2B_HUMAN  Paired mesoderm homeobox p...    52   2e-07 
gi|3915680|sp|Q92988|DLX4_HUMAN  Homeobox protein DLX-4 (DLX...    52   2e-07 
gi|1172022|sp|P23760|PAX3_HUMAN  Paired box protein Pax-3 (H...    51   3e-07 
gi|27923817|sp|Q9H2Z4|NK24_HUMAN  Homeobox protein Nkx-2.4 (...    51   3e-07 
gi|8134640|sp|O14813|PHX2A_HUMAN  Paired mesoderm homeobox p...    51   4e-07 
gi|25009572|sp|Q9NZR4|VSX1_HUMAN  Visual system homeobox 1 (...    50   6e-07 
gi|13626107|sp|O95076|ALX3_HUMAN  Homeobox protein aristales...    50   6e-07 
gi|1174819|sp|P43699|TITF1_HUMAN  Thyroid transcription fact...    49   1e-06 
gi|18202099|sp|O60902|SHOX2_HUMAN  Short stature homeobox pr...    49   1e-06 
gi|6831676|sp|O15266|SHOX_HUMAN  Short stature homeobox prot...    47   4e-06 
gi|3287764|sp|O43186|CRX_HUMAN  Cone-rod homeobox protein          47   7e-06 
gi|12644475|sp|Q99811|PRRX2_HUMAN  Paired mesoderm homeobox ...    46   9e-06 
gi|7531125|sp|P56915|GSC_HUMAN  Homeobox protein goosecoid         45   2e-05 
gi|6093787|sp|O75360|PROP1_HUMAN  Homeobox protein prophet o...    45   2e-05 
gi|28380240|sp|Q9C0A1|ZFHX2_HUMAN  Zinc finger homeobox prot...    44   3e-05 
gi|417425|sp|P32242|OTX1_HUMAN  Homeobox protein OTX1              44   5e-05 
gi|417427|sp|P32243|OTX2_HUMAN  Homeobox protein OTX2              44   5e-05 
gi|37537987|sp|Q9BQY4|PEP2_HUMAN  Paired-like homeobox prote...    44   6e-05 
gi|6685480|sp|O15499|GSCL_HUMAN  Homeobox protein goosecoid-...    44   6e-05 
gi|6174916|sp|P54821|PRRX1_HUMAN  Paired mesoderm homeobox p...    42   1e-04 
gi|37537960|sp|Q8NHV9|PEPP1_HUMAN  Paired-like homeobox prot...    40   7e-04 
gi|123402|sp|P09086|PO2F2_HUMAN  POU domain, class 2, transc...    39   0.002 
gi|18202510|sp|Q15911|ATBF1_HUMAN  Alpha-fetoprotein enhance...    39   0.002 
gi|27923801|sp|Q8TE12|LMX1A_HUMAN  LIM homeobox transcriptio...    38   0.002 
gi|8247930|sp|O60663|LMX1B_HUMAN  LIM homeobox transcription...    38   0.002 
gi|8247936|sp|P50458|LHX2_HUMAN  LIM/homeobox protein Lhx2 (...    37   0.006 
gi|12643346|sp|Q9NQ69|LHX9_HUMAN  LIM/homeobox protein Lhx9        37   0.006 
gi|8134548|sp|Q9UPM6|LHX61_HUMAN  LIM/homeobox protein Lhx6....    37   0.006 
gi|12643415|sp|Q9UBR4|LHX3_HUMAN  LIM/homeobox protein Lhx3        36   0.009 
gi|47117872|sp|P78412|IRX6_HUMAN  Iroquois-class homeodomain...    36   0.009 
gi|12644347|sp|P78413|IRX4_HUMAN  Iroquois-class homeodomain...    36   0.012 
gi|60416412|sp|P48742|LHX1_HUMAN  LIM/homeobox protein Lhx1 ...    35   0.016 
gi|18202938|sp|Q9H2C1|LHX5_HUMAN  LIM/homeobox protein Lhx5        35   0.016 
gi|2495300|sp|Q12837|PO42_HUMAN  POU domain, class 4, transc...    35   0.016 
gi|28202257|sp|P14859|PO2F1_HUMAN  POU domain, class 2, tran...    35   0.021 
gi|20138668|sp|Q969G2|LHX4_HUMAN  LIM/homeobox protein Lhx4        35   0.021 
gi|2495306|sp|Q14863|PO6F1_HUMAN  POU domain, class 6, trans...    35   0.027 
gi|28201861|sp|Q9UKI9|PO2F3_HUMAN  POU domain, class 2, tran...    35   0.027 
gi|2495302|sp|Q15319|PO43_HUMAN  POU domain, class 4, transc...    34   0.036 
gi|20978495|sp|Q96A47|ISL2_HUMAN  Insulin gene enhancer prot...    33   0.061 
gi|2506535|sp|Q01851|PO4F1_HUMAN  POU domain, class 4, trans...    33   0.061 
gi|47117874|sp|P78415|IRX3_HUMAN  Iroquois-class homeodomain...    33   0.10  
gi|47606423|sp|P61371|ISL1_HUMAN  Insulin gene enhancer prot...    32   0.14  
gi|47117873|sp|P78414|IRX1_HUMAN  Iroquois-class homeodomain...    32   0.14  
gi|47117871|sp|P78411|IRX5_HUMAN  Iroquois-class homeodomain...    32   0.14  
gi|47117908|sp|Q9BZI1|IRX2_HUMAN  Iroquois-class homeodomain...    32   0.14  
gi|730281|sp|P40426|PBX3_HUMAN  Pre-B-cell leukemia transcri...    32   0.18  
gi|1352729|sp|P40425|PBX2_HUMAN  Pre-B-cell leukemia transcr...    32   0.23  
gi|12230598|sp|Q9NPC8|SIX2_HUMAN  Homeobox protein SIX2 (Sin...    31   0.30  
gi|37999770|sp|Q9BYU1|PBX4_HUMAN  Pre-B-cell leukemia transc...    31   0.30  
gi|28201884|sp|P78424|PO6F2_HUMAN  POU domain, class 6, tran...    31   0.30  
gi|2495290|sp|Q15475|SIX1_HUMAN  Homeobox protein SIX1 (Sine...    31   0.40  
gi|20141754|sp|P41778|PBX1_MOUSE  Pre-B-cell leukemia transc...    31   0.40  
gi|123408|sp|P28069|PIT1_HUMAN  Pituitary-specific positive ...    30   0.68  
gi|400659|sp|Q01860|PO5F1_HUMAN  POU domain, class 5, transc...    30   0.88  
gi|12230612|sp|Q9UIU6|SIX4_HUMAN  Homeobox protein SIX4 (Sin...    30   0.88  
gi|6094293|sp|O95343|SIX3_HUMAN  Homeobox protein SIX3 (Sine...    28   3.4   
gi|28201858|sp|Q06416|PO5L_HUMAN  POU domain, class 5, trans...    28   3.4   
gi|20532376|sp|Q9Y4X5|ARI1_HUMAN  Ariadne-1 protein homolog ...    28   3.4   
gi|1709437|sp|Q03052|PO3F1_HUMAN  POU domain, class 3, trans...    28   3.4   
gi|28201859|sp|Q9BZV7|PO5M_HUMAN  POU domain, class 5, trans...    28   3.4   
gi|46396941|sp|Q8N196|SIX5_HUMAN  Homeobox protein SIX5 (DM ...    28   3.4   
gi|20141591|sp|Q15811|ITN1_HUMAN  Intersectin 1 (SH3 domain-...    28   3.4   
gi|1705454|sp|P55315|FOXGB_HUMAN  Forkhead box protein G1B (...    27   4.4   
gi|12230578|sp|O95475|SIX6_HUMAN  Homeobox protein SIX6 (Sin...    27   4.4   
gi|1706312|sp|Q10586|DBP_HUMAN  D-site-binding protein (Albu...    27   5.7   
gi|60392394|sp|Q9BPY8|HOP_HUMAN  Homeodomain-only protein (L...    27   5.7   
gi|22001986|sp|Q9BYB0|SHK3_HUMAN  SH3 and multiple ankyrin r...    27   5.7   
gi|44889075|sp|Q9H4I2|ZHX3_HUMAN  Zinc fingers and homeoboxe...    27   7.5   
gi|28202258|sp|P20265|PO3F2_HUMAN  POU domain, class 3, tran...    27   7.5   
gi|1345629|sp|P49335|PO3F4_HUMAN  POU domain, class 3, trans...    27   7.5   
gi|17369320|sp|Q9NRC6|SPCR_HUMAN  Spectrin beta chain, brain...    27   7.5   
gi|2506534|sp|P20264|PO33_HUMAN  POU domain, class 3, transc...    27   7.5   
gi|24636245|sp|Q9H2P0|ADNP_HUMAN  Activity-dependent neuropr...    26   9.7   


Alignments

>gi|52788238|sp|P20719|HXA5_HUMAN   Homeobox protein Hox-A5 (Hox-1C)
          Length = 270

 Score =  321 bits (822), Expect = 1e-88
 Identities = 160/231 (69%), Positives = 160/231 (69%)

Query: 1   MHSGRYGYGYNGMDLSVGRSGSGHFXXXXXXXXXXXXXXXXXXXXXXXQPATSTHSPQPD 60
           MHSGRYGYGYNGMDLSVGRSGSGHF                       QPATSTHSPQPD
Sbjct: 40  MHSGRYGYGYNGMDLSVGRSGSGHFGSGERARSYAASASAAPAEPRYSQPATSTHSPQPD 99

Query: 61  PLPCSAVAPSPGSDXXXXXXXXXXXXXXXXXXXXXTHISSREGVGTASGXXXXXXXXXXX 120
           PLPCSAVAPSPGSD                     THISSREGVGTASG           
Sbjct: 100 PLPCSAVAPSPGSDSHHGGKNSLSNSSGASADAGSTHISSREGVGTASGAEEDAPASSEQ 159

Query: 121 XXXXXXXXXXXXXXXXIYPWMRKLHISHDNIGGPEGKRARTAYTRYQTLELEKEFHFNRY 180
                           IYPWMRKLHISHDNIGGPEGKRARTAYTRYQTLELEKEFHFNRY
Sbjct: 160 ASAQSEPSPAPPAQPQIYPWMRKLHISHDNIGGPEGKRARTAYTRYQTLELEKEFHFNRY 219

Query: 181 LTRRRRIEIAHALCLSERQIKIWFQNRRMKWKKDNKLKSMSMAAAGGAFRP 231
           LTRRRRIEIAHALCLSERQIKIWFQNRRMKWKKDNKLKSMSMAAAGGAFRP
Sbjct: 220 LTRRRRIEIAHALCLSERQIKIWFQNRRMKWKKDNKLKSMSMAAAGGAFRP 270



>gi|400000|sp|P09067|HXB5_HUMAN   Homeobox protein Hox-B5 (Hox-2A) (HHO.C10) (HU-1)
          Length = 269

 Score =  205 bits (522), Expect = 9e-54
 Identities = 119/238 (50%), Positives = 129/238 (54%), Gaps = 15/238 (6%)

Query: 1   MHSGRYGYGYNGMDLSVGRSG--SGHFXXXXXXXXXXXXXXXXXXXXXXXQPATSTHSPQ 58
           MH+G YGY YNGMDLSV RS   S HF                       Q A+S     
Sbjct: 40  MHTGSYGYNYNGMDLSVNRSSASSSHFGAVGESSRAFPAPAQEPRFR---QAASSCSLSS 96

Query: 59  PDPLPCS-----AVAPSPGSDXXXXXXXXXXXXXXXXXXXXXTHISSREGVGTASGXXXX 113
           P+ LPC+        PS  S                         +S E    AS     
Sbjct: 97  PESLPCTNGDSHGAKPSASSPSDQATSASSSANFTEIDEAS----ASSEPEEAASQLSSP 152

Query: 114 XXXXXXXXXXXXXXXXXXXXXXXIYPWMRKLHISHDNIGGPEGKRARTAYTRYQTLELEK 173
                                  I+PWMRKLHISHD + GP+GKRARTAYTRYQTLELEK
Sbjct: 153 SLARAQPEPMATSTAAPEGQTPQIFPWMRKLHISHD-MTGPDGKRARTAYTRYQTLELEK 211

Query: 174 EFHFNRYLTRRRRIEIAHALCLSERQIKIWFQNRRMKWKKDNKLKSMSMAAAGGAFRP 231
           EFHFNRYLTRRRRIEIAHALCLSERQIKIWFQNRRMKWKKDNKLKSMS+A AG AF+P
Sbjct: 212 EFHFNRYLTRRRRIEIAHALCLSERQIKIWFQNRRMKWKKDNKLKSMSLATAGSAFQP 269



>gi|547692|sp|P17483|HXB4_HUMAN   Homeobox protein Hox-B4 (Hox-2F) (Hox-2.6)
          Length = 251

 Score =  146 bits (368), Expect = 6e-36
 Identities = 68/94 (72%), Positives = 79/94 (84%), Gaps = 2/94 (2%)

Query: 137 IYPWMRKLHIS--HDNIGGPEGKRARTAYTRYQTLELEKEFHFNRYLTRRRRIEIAHALC 194
           +YPWMRK+H+S  + N  G E KR+RTAYTR Q LELEKEFH+NRYLTRRRR+EIAHALC
Sbjct: 141 VYPWMRKVHVSTVNPNYAGGEPKRSRTAYTRQQVLELEKEFHYNRYLTRRRRVEIAHALC 200

Query: 195 LSERQIKIWFQNRRMKWKKDNKLKSMSMAAAGGA 228
           LSERQIKIWFQNRRMKWKKD+KL +  + + G A
Sbjct: 201 LSERQIKIWFQNRRMKWKKDHKLPNTKIRSGGAA 234



>gi|232262|sp|Q00444|HXC5_HUMAN   Homeobox protein Hox-C5 (Hox-3D) (CP11)
          Length = 222

 Score =  144 bits (363), Expect = 2e-35
 Identities = 67/83 (80%), Positives = 76/83 (91%), Gaps = 4/83 (4%)

Query: 137 IYPWMRKLHISHDNIGGPEGKRARTAYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLS 196
           IYPWM KLH+SH+     +GKR+RT+YTRYQTLELEKEFHFNRYLTRRRRIEIA+ LCL+
Sbjct: 140 IYPWMTKLHMSHET----DGKRSRTSYTRYQTLELEKEFHFNRYLTRRRRIEIANNLCLN 195

Query: 197 ERQIKIWFQNRRMKWKKDNKLKS 219
           ERQIKIWFQNRRMKWKKD+K+KS
Sbjct: 196 ERQIKIWFQNRRMKWKKDSKMKS 218



>gi|6166217|sp|Q00056|HXA4_HUMAN   Homeobox protein Hox-A4 (Hox-1D) (Hox-1.4)
          Length = 320

 Score =  142 bits (359), Expect = 7e-35
 Identities = 67/94 (71%), Positives = 77/94 (81%), Gaps = 2/94 (2%)

Query: 137 IYPWMRKLHISHDN--IGGPEGKRARTAYTRYQTLELEKEFHFNRYLTRRRRIEIAHALC 194
           +YPWM+K+H+S  N    G E KR+RTAYTR Q LELEKEFHFNRYLTRRRRIEIAH LC
Sbjct: 194 VYPWMKKIHVSAVNPSYNGGEPKRSRTAYTRQQVLELEKEFHFNRYLTRRRRIEIAHTLC 253

Query: 195 LSERQIKIWFQNRRMKWKKDNKLKSMSMAAAGGA 228
           LSERQ+KIWFQNRRMKWKKD+KL +  M ++  A
Sbjct: 254 LSERQVKIWFQNRRMKWKKDHKLPNTKMRSSNSA 287



>gi|13124738|sp|P17509|HXB6_HUMAN   Homeobox protein Hox-B6 (Hox-2B) (Hox-2.2) (HU-2)
          Length = 224

 Score =  140 bits (354), Expect = 3e-34
 Identities = 63/89 (70%), Positives = 76/89 (85%)

Query: 137 IYPWMRKLHISHDNIGGPEGKRARTAYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLS 196
           +YPWM++++  + +  GP G+R R  YTRYQTLELEKEFH+NRYLTRRRRIEIAHALCL+
Sbjct: 127 VYPWMQRMNSCNSSSFGPSGRRGRQTYTRYQTLELEKEFHYNRYLTRRRRIEIAHALCLT 186

Query: 197 ERQIKIWFQNRRMKWKKDNKLKSMSMAAA 225
           ERQIKIWFQNRRMKWKK++KL S S  +A
Sbjct: 187 ERQIKIWFQNRRMKWKKESKLLSASQLSA 215



>gi|20141491|sp|P09016|HXD4_HUMAN   Homeobox protein Hox-D4 (Hox-4B) (Hox-5.1) (HHO.C13)
          Length = 255

 Score =  139 bits (350), Expect = 8e-34
 Identities = 65/83 (78%), Positives = 73/83 (87%), Gaps = 2/83 (2%)

Query: 137 IYPWMRKLHIS--HDNIGGPEGKRARTAYTRYQTLELEKEFHFNRYLTRRRRIEIAHALC 194
           +YPWM+K+H++  + N  G E KR+RTAYTR Q LELEKEFHFNRYLTRRRRIEIAH LC
Sbjct: 133 VYPWMKKVHVNSVNPNYTGGEPKRSRTAYTRQQVLELEKEFHFNRYLTRRRRIEIAHTLC 192

Query: 195 LSERQIKIWFQNRRMKWKKDNKL 217
           LSERQIKIWFQNRRMKWKKD+KL
Sbjct: 193 LSERQIKIWFQNRRMKWKKDHKL 215



>gi|123279|sp|P09017|HXC4_HUMAN   Homeobox protein Hox-C4 (Hox-3E) (CP19)
          Length = 264

 Score =  139 bits (350), Expect = 8e-34
 Identities = 64/91 (70%), Positives = 77/91 (84%), Gaps = 2/91 (2%)

Query: 137 IYPWMRKLHIS--HDNIGGPEGKRARTAYTRYQTLELEKEFHFNRYLTRRRRIEIAHALC 194
           +YPWM+K+H+S  + N  G E KR+R AYTR Q LELEKEFH+NRYLTRRRRIEIAH+LC
Sbjct: 135 VYPWMKKIHVSTVNPNYNGGEPKRSRAAYTRQQVLELEKEFHYNRYLTRRRRIEIAHSLC 194

Query: 195 LSERQIKIWFQNRRMKWKKDNKLKSMSMAAA 225
           LSERQIKIWFQNRRMKWKKD++L +  + +A
Sbjct: 195 LSERQIKIWFQNRRMKWKKDHRLPNTKVRSA 225



>gi|17378385|sp|P31267|HXA6_HUMAN   Homeobox protein Hox-A6 (Hox-1B)
          Length = 233

 Score =  134 bits (336), Expect = 3e-32
 Identities = 60/81 (74%), Positives = 70/81 (86%)

Query: 137 IYPWMRKLHISHDNIGGPEGKRARTAYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLS 196
           +YPWM++++     + G  G+R R  YTRYQTLELEKEFHFNRYLTRRRRIEIA+ALCL+
Sbjct: 136 VYPWMQRMNSCAGAVYGSHGRRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIANALCLT 195

Query: 197 ERQIKIWFQNRRMKWKKDNKL 217
           ERQIKIWFQNRRMKWKK+NKL
Sbjct: 196 ERQIKIWFQNRRMKWKKENKL 216



>gi|20141493|sp|P09630|HXC6_HUMAN   Homeobox protein Hox-C6 (Hox-3C) (HHO.C8) (CP25)
          Length = 235

 Score =  134 bits (336), Expect = 3e-32
 Identities = 64/93 (68%), Positives = 76/93 (81%), Gaps = 2/93 (2%)

Query: 137 IYPWMRKLHISHDNIG-GPEGKRARTAYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCL 195
           IYPWM++++ SH  +G G + +R R  Y+RYQTLELEKEFHFNRYLTRRRRIEIA+ALCL
Sbjct: 122 IYPWMQRMN-SHSGVGYGADRRRGRQIYSRYQTLELEKEFHFNRYLTRRRRIEIANALCL 180

Query: 196 SERQIKIWFQNRRMKWKKDNKLKSMSMAAAGGA 228
           +ERQIKIWFQNRRMKWKK++ L S      GGA
Sbjct: 181 TERQIKIWFQNRRMKWKKESNLTSTLSGGGGGA 213



>gi|3915721|sp|P31268|HXA7_HUMAN   Homeobox protein Hox-A7 (Hox-1A) (Hox 1.1)
          Length = 230

 Score =  133 bits (335), Expect = 4e-32
 Identities = 65/89 (73%), Positives = 71/89 (79%), Gaps = 8/89 (8%)

Query: 137 IYPWMRKLHISHDNIGGPEGKRARTAYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLS 196
           IYPWMR          GP+ KR R  YTRYQTLELEKEFHFNRYLTRRRRIEIAHALCL+
Sbjct: 119 IYPWMRS--------SGPDRKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLT 170

Query: 197 ERQIKIWFQNRRMKWKKDNKLKSMSMAAA 225
           ERQIKIWFQNRRMKWKK++K +  + AAA
Sbjct: 171 ERQIKIWFQNRRMKWKKEHKDEGPTAAAA 199



>gi|123255|sp|P09629|HXB7_HUMAN   Homeobox protein Hox-B7 (Hox-2C) (HHO.C1)
          Length = 217

 Score =  127 bits (318), Expect = 4e-30
 Identities = 60/80 (75%), Positives = 64/80 (80%), Gaps = 8/80 (10%)

Query: 137 IYPWMRKLHISHDNIGGPEGKRARTAYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLS 196
           IYPWMR          G + KR R  YTRYQTLELEKEFH+NRYLTRRRRIEIAH LCL+
Sbjct: 126 IYPWMRS--------SGTDRKRGRQTYTRYQTLELEKEFHYNRYLTRRRRIEIAHTLCLT 177

Query: 197 ERQIKIWFQNRRMKWKKDNK 216
           ERQIKIWFQNRRMKWKK+NK
Sbjct: 178 ERQIKIWFQNRRMKWKKENK 197



>gi|13124737|sp|P13378|HXD8_HUMAN   Homeobox protein Hox-D8 (Hox-4E) (Hox-5.4)
          Length = 290

 Score =  105 bits (263), Expect = 1e-23
 Identities = 49/79 (62%), Positives = 60/79 (75%), Gaps = 7/79 (8%)

Query: 137 IYPWMRKLHISHDNIGGPEGKRARTAYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLS 196
           ++PWMR           P  +R R  Y+R+QTLELEKEF FN YLTR+RRIE++HAL L+
Sbjct: 185 MFPWMRPQ-------AAPGRRRGRQTYSRFQTLELEKEFLFNPYLTRKRRIEVSHALALT 237

Query: 197 ERQIKIWFQNRRMKWKKDN 215
           ERQ+KIWFQNRRMKWKK+N
Sbjct: 238 ERQVKIWFQNRRMKWKKEN 256



>gi|123268|sp|P14651|HXB3_HUMAN   Homeobox protein Hox-B3 (Hox-2G) (Hox-2.7)
          Length = 431

 Score =  104 bits (259), Expect = 3e-23
 Identities = 50/75 (66%), Positives = 59/75 (78%)

Query: 152 GGPEGKRARTAYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLSERQIKIWFQNRRMKW 211
           G    KRARTAYT  Q +ELEKEFHFNRYL R RR+E+A+ L LSERQIKIWFQNRRMK+
Sbjct: 184 GSAASKRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLSERQIKIWFQNRRMKY 243

Query: 212 KKDNKLKSMSMAAAG 226
           KKD K K ++ ++ G
Sbjct: 244 KKDQKAKGLASSSGG 258



>gi|13124745|sp|P31273|HXC8_HUMAN   Homeobox protein Hox-C8 (Hox-3A)
          Length = 242

 Score =  103 bits (257), Expect = 5e-23
 Identities = 49/79 (62%), Positives = 59/79 (74%), Gaps = 8/79 (10%)

Query: 137 IYPWMRKLHISHDNIGGPEGKRARTAYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLS 196
           ++PWMR           P  +  R  Y+RYQTLELEKEF FN YLTR+RRIE++HAL L+
Sbjct: 138 MFPWMRP--------HAPGRRSGRQTYSRYQTLELEKEFLFNPYLTRKRRIEVSHALGLT 189

Query: 197 ERQIKIWFQNRRMKWKKDN 215
           ERQ+KIWFQNRRMKWKK+N
Sbjct: 190 ERQVKIWFQNRRMKWKKEN 208



>gi|20141506|sp|P17481|HXB8_HUMAN   Homeobox protein Hox-B8 (Hox-2D) (Hox-2.4)
          Length = 243

 Score =  103 bits (257), Expect = 5e-23
 Identities = 49/79 (62%), Positives = 59/79 (74%), Gaps = 7/79 (8%)

Query: 137 IYPWMRKLHISHDNIGGPEGKRARTAYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLS 196
           ++PWMR              +R R  Y+RYQTLELEKEF FN YLTR+RRIE++HAL L+
Sbjct: 134 LFPWMRPQ-------AAAGRRRGRQTYSRYQTLELEKEFLFNPYLTRKRRIEVSHALGLT 186

Query: 197 ERQIKIWFQNRRMKWKKDN 215
           ERQ+KIWFQNRRMKWKK+N
Sbjct: 187 ERQVKIWFQNRRMKWKKEN 205



>gi|6016293|sp|O43365|HXA3_HUMAN   Homeobox protein Hox-A3 (Hox-1E)
          Length = 443

 Score =  101 bits (252), Expect = 2e-22
 Identities = 50/75 (66%), Positives = 58/75 (77%)

Query: 152 GGPEGKRARTAYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLSERQIKIWFQNRRMKW 211
           G    KRARTAYT  Q +ELEKEFHFNRYL R RR+E+A+ L L+ERQIKIWFQNRRMK+
Sbjct: 187 GQASSKRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKY 246

Query: 212 KKDNKLKSMSMAAAG 226
           KKD K K M  ++ G
Sbjct: 247 KKDQKGKGMLTSSGG 261



>gi|6166222|sp|P31249|HXD3_HUMAN   Homeobox protein Hox-D3 (Hox-4A)
          Length = 416

 Score =  101 bits (251), Expect = 2e-22
 Identities = 48/68 (70%), Positives = 55/68 (80%)

Query: 153 GPEGKRARTAYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLSERQIKIWFQNRRMKWK 212
           GP  KR RTAYT  Q +ELEKEFHFNRYL R RR+E+A+ L L+ERQIKIWFQNRRMK+K
Sbjct: 175 GPASKRVRTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYK 234

Query: 213 KDNKLKSM 220
           KD K K +
Sbjct: 235 KDQKAKGI 242



>gi|1708540|sp|P52945|IPF1_HUMAN   Insulin promoter factor-1 (IPF-1) (Pancreas/duodenum homeobox-1)
           (PDX-1) (Islet/duodenum homeobox-1) (IDX-1)
           (Somatostatin transactivating factor-1) (STF-1) (Insulin
           upstream factor-1) (IUF-1) (Glucose-sensitive factor)
           (GSF)
          Length = 283

 Score = 97.8 bits (242), Expect = 3e-21
 Identities = 53/99 (53%), Positives = 62/99 (62%), Gaps = 9/99 (9%)

Query: 138 YPWMR--KLHISHDNIGG-------PEGKRARTAYTRYQTLELEKEFHFNRYLTRRRRIE 188
           +PWM+  K H       G        E KR RTAYTR Q LELEKEF FN+Y++R RR+E
Sbjct: 119 FPWMKSTKAHAWKGQWAGGAYAAEPEENKRTRTAYTRAQLLELEKEFLFNKYISRPRRVE 178

Query: 189 IAHALCLSERQIKIWFQNRRMKWKKDNKLKSMSMAAAGG 227
           +A  L L+ER IKIWFQNRRMKWKK+   K     A GG
Sbjct: 179 LAVMLNLTERHIKIWFQNRRMKWKKEEDKKRGGGTAVGG 217



>gi|20141537|sp|P31274|HXC9_HUMAN   Homeobox protein Hox-C9 (Hox-3B)
          Length = 260

 Score = 89.4 bits (220), Expect = 9e-19
 Identities = 43/63 (68%), Positives = 50/63 (79%)

Query: 157 KRARTAYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLSERQIKIWFQNRRMKWKKDNK 216
           ++ R  YT+YQTLELEKEF FN YLTR RR E+A  L L+ERQ+KIWFQNRRMK KK NK
Sbjct: 193 RKKRCPYTKYQTLELEKEFLFNMYLTRDRRYEVARVLNLTERQVKIWFQNRRMKMKKMNK 252

Query: 217 LKS 219
            K+
Sbjct: 253 EKT 255



>gi|123270|sp|P14652|HXB2_HUMAN   Homeobox protein Hox-B2 (Hox-2H) (Hox-2.8) (K8)
          Length = 356

 Score = 89.4 bits (220), Expect = 9e-19
 Identities = 42/65 (64%), Positives = 50/65 (76%)

Query: 152 GGPEGKRARTAYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLSERQIKIWFQNRRMKW 211
           GG   +R RTAYT  Q LELEKEFHFN+YL R RR+EIA  L L+ERQ+K+WFQNRRMK 
Sbjct: 139 GGGGARRLRTAYTNTQLLELEKEFHFNKYLCRPRRVEIAALLDLTERQVKVWFQNRRMKH 198

Query: 212 KKDNK 216
           K+  +
Sbjct: 199 KRQTQ 203



>gi|6016292|sp|O43364|HXA2_HUMAN   Homeobox protein Hox-A2
          Length = 376

 Score = 89.0 bits (219), Expect = 1e-18
 Identities = 45/75 (60%), Positives = 55/75 (73%), Gaps = 2/75 (2%)

Query: 144 LHISHDNIGGPEGKRARTAYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLSERQIKIW 203
           L I+  + GG   +R RTAYT  Q LELEKEFHFN+YL R RR+EIA  L L+ERQ+K+W
Sbjct: 133 LEIADGSGGG--SRRLRTAYTNTQLLELEKEFHFNKYLCRPRRVEIAALLDLTERQVKVW 190

Query: 204 FQNRRMKWKKDNKLK 218
           FQNRRMK K+  + K
Sbjct: 191 FQNRRMKHKRQTQCK 205



>gi|20141507|sp|P17482|HXB9_HUMAN   Homeobox protein Hox-B9 (Hox-2E) (Hox-2.5)
          Length = 250

 Score = 88.2 bits (217), Expect = 2e-18
 Identities = 43/60 (71%), Positives = 48/60 (80%)

Query: 157 KRARTAYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLSERQIKIWFQNRRMKWKKDNK 216
           ++ R  YT+YQTLELEKEF FN YLTR RR E+A  L LSERQ+KIWFQNRRMK KK NK
Sbjct: 186 RKKRCPYTKYQTLELEKEFLFNMYLTRDRRHEVARLLNLSERQVKIWFQNRRMKMKKMNK 245



>gi|123286|sp|P28356|HXD9_HUMAN   Homeobox protein Hox-D9 (Hox-4C) (Hox-5.2)
          Length = 342

 Score = 86.7 bits (213), Expect = 6e-18
 Identities = 42/62 (67%), Positives = 49/62 (79%)

Query: 157 KRARTAYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLSERQIKIWFQNRRMKWKKDNK 216
           ++ R  YT+YQTLELEKEF FN YLTR RR E+A  L L+ERQ+KIWFQNRRMK KK +K
Sbjct: 276 RKKRCPYTKYQTLELEKEFLFNMYLTRDRRYEVARILNLTERQVKIWFQNRRMKMKKMSK 335

Query: 217 LK 218
            K
Sbjct: 336 EK 337



>gi|13124743|sp|P31260|HXA10_HUMAN   Homeobox protein Hox-A10 (Hox-1H) (Hox-1.8) (PL)
          Length = 393

 Score = 86.3 bits (212), Expect = 8e-18
 Identities = 39/61 (63%), Positives = 51/61 (83%)

Query: 156 GKRARTAYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLSERQIKIWFQNRRMKWKKDN 215
           G++ R  YT++QTLELEKEF FN YLTR RR+EI+ ++ L++RQ+KIWFQNRRMK KK N
Sbjct: 319 GRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISRSVHLTDRQVKIWFQNRRMKLKKMN 378

Query: 216 K 216
           +
Sbjct: 379 R 379



>gi|20141612|sp|Q9NYD6|HXC10_HUMAN   Homeobox protein Hox-C10
          Length = 342

 Score = 85.9 bits (211), Expect = 1e-17
 Identities = 39/61 (63%), Positives = 50/61 (81%)

Query: 156 GKRARTAYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLSERQIKIWFQNRRMKWKKDN 215
           G++ R  YT++QTLELEKEF FN YLTR RR+EI+  + L++RQ+KIWFQNRRMK KK N
Sbjct: 268 GRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISKTINLTDRQVKIWFQNRRMKLKKMN 327

Query: 216 K 216
           +
Sbjct: 328 R 328



>gi|6166219|sp|P31269|HXA9_HUMAN   Homeobox protein Hox-A9 (Hox-1G)
          Length = 272

 Score = 85.9 bits (211), Expect = 1e-17
 Identities = 41/60 (68%), Positives = 48/60 (80%)

Query: 157 KRARTAYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLSERQIKIWFQNRRMKWKKDNK 216
           ++ R  YT++QTLELEKEF FN YLTR RR E+A  L L+ERQ+KIWFQNRRMK KK NK
Sbjct: 207 RKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKINK 266



>gi|123289|sp|P28358|HXD10_HUMAN   Homeobox protein Hox-D10 (Hox-4D) (Hox-4E)
          Length = 340

 Score = 85.1 bits (209), Expect = 2e-17
 Identities = 39/69 (56%), Positives = 56/69 (81%), Gaps = 3/69 (4%)

Query: 156 GKRARTAYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLSERQIKIWFQNRRMKWKK-- 213
           G++ R  YT++QTLELEKEF FN YLTR RR+EI+ ++ L++RQ+KIWFQNRRMK KK  
Sbjct: 266 GRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISKSVNLTDRQVKIWFQNRRMKLKKMS 325

Query: 214 -DNKLKSMS 221
            +N+++ ++
Sbjct: 326 RENRIRELT 334



>gi|27923786|sp|Q9H4S2|GSHI_HUMAN   Homeobox protein GSH-1
          Length = 264

 Score = 84.7 bits (208), Expect = 2e-17
 Identities = 44/75 (58%), Positives = 52/75 (69%)

Query: 154 PEGKRARTAYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLSERQIKIWFQNRRMKWKK 213
           P  KR RTA+T  Q LELE+EF  N YL+R RRIEIA  L LSE+Q+KIWFQNRR+K KK
Sbjct: 145 PSSKRMRTAFTSTQLLELEREFASNMYLSRLRRIEIATYLNLSEKQVKIWFQNRRVKHKK 204

Query: 214 DNKLKSMSMAAAGGA 228
           + K  +      GGA
Sbjct: 205 EGKGSNHRGGGGGGA 219



>gi|20138327|sp|Q9BZM3|GSH2_HUMAN   Homeobox protein GSH-2
          Length = 304

 Score = 84.7 bits (208), Expect = 2e-17
 Identities = 42/63 (66%), Positives = 49/63 (77%)

Query: 154 PEGKRARTAYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLSERQIKIWFQNRRMKWKK 213
           P GKR RTA+T  Q LELE+EF  N YL+R RRIEIA  L LSE+Q+KIWFQNRR+K KK
Sbjct: 200 PNGKRMRTAFTSTQLLELEREFSSNMYLSRLRRIEIATYLNLSEKQVKIWFQNRRVKHKK 259

Query: 214 DNK 216
           + K
Sbjct: 260 EGK 262



>gi|123271|sp|P14653|HXB1_HUMAN   Homeobox protein Hox-B1 (Hox-2I)
          Length = 301

 Score = 82.8 bits (203), Expect = 9e-17
 Identities = 41/68 (60%), Positives = 49/68 (72%), Gaps = 2/68 (2%)

Query: 146 ISHDNIGGPEGKRARTAYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLSERQIKIWFQ 205
           +S   +G P G   RT +T  Q  ELEKEFHFN+YL+R RR+EIA  L L+E Q+KIWFQ
Sbjct: 195 VSEPGLGSPSG--LRTNFTTRQLTELEKEFHFNKYLSRARRVEIAATLELNETQVKIWFQ 252

Query: 206 NRRMKWKK 213
           NRRMK KK
Sbjct: 253 NRRMKQKK 260



>gi|1345720|sp|P47902|CDX1_HUMAN   Homeobox protein CDX-1 (Caudal-type homeobox protein 1)
          Length = 265

 Score = 82.8 bits (203), Expect = 9e-17
 Identities = 45/86 (52%), Positives = 57/86 (66%), Gaps = 7/86 (8%)

Query: 138 YPWMRKLHISHDNIGGPEGK-----RARTAYTRYQTLELEKEFHFNRYLTRRRRIEIAHA 192
           Y WMR+   +    GG  GK     + R  YT +Q LELEKEFH++RY+T RR+ E+A  
Sbjct: 133 YEWMRRSVAAGG--GGGSGKTRTKDKYRVVYTDHQRLELEKEFHYSRYITIRRKSELAAN 190

Query: 193 LCLSERQIKIWFQNRRMKWKKDNKLK 218
           L L+ERQ+KIWFQNRR K +K NK K
Sbjct: 191 LGLTERQVKIWFQNRRAKERKVNKKK 216



>gi|45644931|sp|P50219|HLXB9_HUMAN   Homeobox protein HB9
          Length = 403

 Score = 82.0 bits (201), Expect = 1e-16
 Identities = 37/69 (53%), Positives = 49/69 (71%)

Query: 157 KRARTAYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLSERQIKIWFQNRRMKWKKDNK 216
           +R RTA+T  Q LELE +F  N+YL+R +R E+A +L L+E Q+KIWFQNRRMKWK+  K
Sbjct: 244 RRPRTAFTSQQLLELEHQFKLNKYLSRPKRFEVATSLMLTETQVKIWFQNRRMKWKRSKK 303

Query: 217 LKSMSMAAA 225
            K  +   A
Sbjct: 304 AKEQAAQEA 312



>gi|20141282|sp|Q99626|CDX2_HUMAN   Homeobox protein CDX-2 (Caudal-type homeobox protein 2) (CDX-3)
          Length = 313

 Score = 81.6 bits (200), Expect = 2e-16
 Identities = 44/83 (53%), Positives = 55/83 (66%), Gaps = 6/83 (7%)

Query: 140 WMRKLHISHDNIGGPEGKRA----RTAYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCL 195
           WMRK   +  ++G     R     R  YT +Q LELEKEFH++RY+T RR+ E+A  L L
Sbjct: 168 WMRKP--AQQSLGSQVKTRTKDKYRVVYTDHQRLELEKEFHYSRYITIRRKAELAATLGL 225

Query: 196 SERQIKIWFQNRRMKWKKDNKLK 218
           SERQ+KIWFQNRR K +K NK K
Sbjct: 226 SERQVKIWFQNRRAKERKINKKK 248



>gi|6166216|sp|P49639|HXA1_HUMAN   Homeobox protein Hox-A1 (Hox-1F)
          Length = 335

 Score = 81.3 bits (199), Expect = 3e-16
 Identities = 39/57 (68%), Positives = 45/57 (78%)

Query: 160 RTAYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLSERQIKIWFQNRRMKWKKDNK 216
           RT +T  Q  ELEKEFHFN+YLTR RR+EIA +L L+E Q+KIWFQNRRMK KK  K
Sbjct: 233 RTNFTTKQLTELEKEFHFNKYLTRARRVEIAASLQLNETQVKIWFQNRRMKQKKREK 289



>gi|1709078|sp|P50221|MEOX1_HUMAN   Homeobox protein MOX-1 (Mesenchyme homeobox 1)
          Length = 254

 Score = 81.3 bits (199), Expect = 3e-16
 Identities = 41/71 (57%), Positives = 51/71 (71%), Gaps = 4/71 (5%)

Query: 147 SHDNIGGPEG----KRARTAYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLSERQIKI 202
           + +N G PEG    ++ RTA+T+ Q  ELE EF  + YLTR RR EIA  L LSERQ+K+
Sbjct: 158 NQENRGKPEGSSKARKERTAFTKEQLRELEAEFAHHNYLTRLRRYEIAVNLDLSERQVKV 217

Query: 203 WFQNRRMKWKK 213
           WFQNRRMKWK+
Sbjct: 218 WFQNRRMKWKR 228



>gi|12230077|sp|Q14549|GBX1_HUMAN   Homeobox protein GBX-1 (Gastrulation and brain-specific homeobox
           protein 1)
          Length = 139

 Score = 80.9 bits (198), Expect = 3e-16
 Identities = 38/61 (62%), Positives = 46/61 (75%)

Query: 153 GPEGKRARTAYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLSERQIKIWFQNRRMKWK 212
           G + +R RTA+T  Q LELEKEFH  +YL+   R +IAHAL LSE Q+KIWFQNRR KWK
Sbjct: 34  GGKSRRRRTAFTSEQLLELEKEFHCKKYLSLTERSQIAHALKLSEVQVKIWFQNRRAKWK 93

Query: 213 K 213
           +
Sbjct: 94  R 94



>gi|12644308|sp|P52951|GBX2_HUMAN   Homeobox protein GBX-2 (Gastrulation and brain-specific homeobox
           protein 2)
          Length = 348

 Score = 79.3 bits (194), Expect = 1e-15
 Identities = 37/59 (62%), Positives = 45/59 (76%)

Query: 155 EGKRARTAYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLSERQIKIWFQNRRMKWKK 213
           + +R RTA+T  Q LELEKEFH  +YL+   R +IAHAL LSE Q+KIWFQNRR KWK+
Sbjct: 246 KNRRRRTAFTSEQLLELEKEFHCKKYLSLTERSQIAHALKLSEVQVKIWFQNRRAKWKR 304



>gi|3023467|sp|O14627|CDX4_HUMAN   Homeobox protein CDX-4 (Caudal-type homeobox protein 4)
          Length = 284

 Score = 79.0 bits (193), Expect = 1e-15
 Identities = 45/91 (49%), Positives = 55/91 (60%), Gaps = 2/91 (2%)

Query: 138 YPWMRKLHISHDNIGGPEGKRARTAYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLSE 197
           Y WMRK           E  + R  YT +Q LELEKEFH NRY+T +R+ E+A  L LSE
Sbjct: 157 YAWMRKTVQVTGKTRTKE--KYRVVYTDHQRLELEKEFHCNRYITIQRKSELAVNLGLSE 214

Query: 198 RQIKIWFQNRRMKWKKDNKLKSMSMAAAGGA 228
           RQ+KIWFQNRR K +K  K K      +GG+
Sbjct: 215 RQVKIWFQNRRAKERKMIKKKISQFENSGGS 245



>gi|17378648|sp|Q9GZZ0|HXD1_HUMAN   Homeobox protein Hox-D1
          Length = 328

 Score = 78.6 bits (192), Expect = 2e-15
 Identities = 37/54 (68%), Positives = 44/54 (81%)

Query: 160 RTAYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLSERQIKIWFQNRRMKWKK 213
           RT ++  Q  ELEKEFHFN+YLTR RRIEIA+ L L++ Q+KIWFQNRRMK KK
Sbjct: 233 RTNFSTKQLTELEKEFHFNKYLTRARRIEIANCLHLNDTQVKIWFQNRRMKQKK 286



>gi|13124744|sp|P31270|HXA11_HUMAN   Homeobox protein Hox-A11 (Hox-1I)
          Length = 313

 Score = 75.9 bits (185), Expect = 1e-14
 Identities = 35/73 (47%), Positives = 51/73 (69%), Gaps = 3/73 (4%)

Query: 147 SHDNIGGPEGKRARTA---YTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLSERQIKIW 203
           + D  GG  G+R R     YT+YQ  ELE+EF F+ Y+ + +R++++  L L++RQ+KIW
Sbjct: 229 TEDKAGGSSGQRTRKKRCPYTKYQIRELEREFFFSVYINKEKRLQLSRMLNLTDRQVKIW 288

Query: 204 FQNRRMKWKKDNK 216
           FQNRRMK KK N+
Sbjct: 289 FQNRRMKEKKINR 301



>gi|1709079|sp|P50222|MEOX2_HUMAN   Homeobox protein MOX-2 (Mesenchyme homeobox 2) (Growth
           arrest-specific homeobox)
          Length = 303

 Score = 75.1 bits (183), Expect = 2e-14
 Identities = 35/57 (61%), Positives = 44/57 (77%)

Query: 157 KRARTAYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLSERQIKIWFQNRRMKWKK 213
           ++ RTA+T+ Q  ELE EF  + YLTR RR EIA  L L+ERQ+K+WFQNRRMKWK+
Sbjct: 187 RKERTAFTKEQIRELEAEFAHHNYLTRLRRYEIAVNLDLTERQVKVWFQNRRMKWKR 243



>gi|12644203|sp|P31277|HXD11_HUMAN   Homeobox protein Hox-D11 (Hox-4F)
          Length = 338

 Score = 73.2 bits (178), Expect = 7e-14
 Identities = 32/70 (45%), Positives = 48/70 (68%)

Query: 147 SHDNIGGPEGKRARTAYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLSERQIKIWFQN 206
           S   +     ++ R  YT+YQ  ELE+EF FN Y+ + +R++++  L L++RQ+KIWFQN
Sbjct: 257 SSSAVAPQRSRKKRCPYTKYQIRELEREFFFNVYINKEKRLQLSRMLNLTDRQVKIWFQN 316

Query: 207 RRMKWKKDNK 216
           RRMK KK N+
Sbjct: 317 RRMKEKKLNR 326



>gi|3287858|sp|O43248|HXC11_HUMAN   Homeobox protein Hox-C11
          Length = 304

 Score = 70.1 bits (170), Expect = 6e-13
 Identities = 29/60 (48%), Positives = 45/60 (75%)

Query: 154 PEGKRARTAYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLSERQIKIWFQNRRMKWKK 213
           P  ++ R  Y+++Q  ELE+EF FN Y+ + +R++++  L L++RQ+KIWFQNRRMK KK
Sbjct: 230 PRTRKKRCPYSKFQIRELEREFFFNVYINKEKRLQLSRMLNLTDRQVKIWFQNRRMKEKK 289



>gi|399982|sp|P31314|TLX1_HUMAN   T-cell leukemia homeobox protein 1 (Homeobox protein Hox-11) (TCL-3
           proto-oncogene)
          Length = 330

 Score = 68.9 bits (167), Expect = 1e-12
 Identities = 34/85 (40%), Positives = 48/85 (56%), Gaps = 9/85 (10%)

Query: 138 YPWMRK-LHISHDNIGG--------PEGKRARTAYTRYQTLELEKEFHFNRYLTRRRRIE 188
           +PWM      + D   G        P+ K+ RT++TR Q  ELEK FH  +YL    R  
Sbjct: 174 FPWMESNRRYTKDRFTGHPYQNRTPPKKKKPRTSFTRLQICELEKRFHRQKYLASAERAA 233

Query: 189 IAHALCLSERQIKIWFQNRRMKWKK 213
           +A AL +++ Q+K WFQNRR KW++
Sbjct: 234 LAKALKMTDAQVKTWFQNRRTKWRR 258



>gi|14194481|sp|Q9HBU1|BARX1_HUMAN   Homeobox protein BarH-like 1
          Length = 225

 Score = 68.9 bits (167), Expect = 1e-12
 Identities = 30/59 (50%), Positives = 43/59 (72%)

Query: 155 EGKRARTAYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLSERQIKIWFQNRRMKWKK 213
           +G+R+RT +T  Q + LEK F   +YL+   RI++A +L LS+ Q+K W+QNRRMKWKK
Sbjct: 112 KGRRSRTVFTELQLMGLEKRFEKQKYLSTPDRIDLAESLGLSQLQVKTWYQNRRMKWKK 170



>gi|12644227|sp|P35452|HXD12_HUMAN   Homeobox protein Hox-D12 (Hox-4H)
          Length = 275

 Score = 68.2 bits (165), Expect = 2e-12
 Identities = 32/63 (50%), Positives = 46/63 (73%), Gaps = 1/63 (1%)

Query: 152 GGP-EGKRARTAYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLSERQIKIWFQNRRMK 210
           GGP E ++ R  YT+ Q  ELE EF  N ++ R++R E+++ L LS++Q+KIWFQNRRMK
Sbjct: 202 GGPGEARKKRKPYTKQQIAELENEFLVNEFINRQKRKELSNRLNLSDQQVKIWFQNRRMK 261

Query: 211 WKK 213
            K+
Sbjct: 262 KKR 264



>gi|12231013|sp|Q03828|EVX2_HUMAN   Homeobox even-skipped homolog protein 2 (EVX-2)
          Length = 476

 Score = 68.2 bits (165), Expect = 2e-12
 Identities = 34/62 (54%), Positives = 43/62 (69%)

Query: 152 GGPEGKRARTAYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLSERQIKIWFQNRRMKW 211
           G  + +R RTA+TR Q   LEKEF+   Y++R RR E+A AL L E  IK+WFQNRRMK 
Sbjct: 184 GADQVRRYRTAFTREQIARLEKEFYRENYVSRPRRCELAAALNLPETTIKVWFQNRRMKD 243

Query: 212 KK 213
           K+
Sbjct: 244 KR 245



>gi|14917010|sp|Q05925|HME1_HUMAN   Homeobox protein engrailed-1 (Hu-En-1)
          Length = 392

 Score = 67.8 bits (164), Expect = 3e-12
 Identities = 34/65 (52%), Positives = 43/65 (66%)

Query: 155 EGKRARTAYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLSERQIKIWFQNRRMKWKKD 214
           E KR RTA+T  Q   L+ EF  NRY+T +RR  +A  L L+E QIKIWFQN+R K KK 
Sbjct: 302 EDKRPRTAFTAEQLQRLKAEFQANRYITEQRRQTLAQELSLNESQIKIWFQNKRAKIKKA 361

Query: 215 NKLKS 219
             +K+
Sbjct: 362 TGIKN 366



>gi|21903415|sp|P19622|HME2_HUMAN   Homeobox protein engrailed-2 (Hu-En-2)
          Length = 333

 Score = 67.4 bits (163), Expect = 4e-12
 Identities = 34/59 (57%), Positives = 40/59 (67%)

Query: 155 EGKRARTAYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLSERQIKIWFQNRRMKWKK 213
           E KR RTA+T  Q   L+ EF  NRYLT +RR  +A  L L+E QIKIWFQN+R K KK
Sbjct: 243 EDKRPRTAFTAEQLQRLKAEFQTNRYLTEQRRQSLAQELSLNESQIKIWFQNKRAKIKK 301



>gi|23831508|sp|O43711|TLX3_HUMAN   T-cell leukemia homeobox protein 3 (Homeobox protein Hox-11L2)
          Length = 291

 Score = 67.0 bits (162), Expect = 5e-12
 Identities = 29/72 (40%), Positives = 46/72 (63%)

Query: 142 RKLHISHDNIGGPEGKRARTAYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLSERQIK 201
           R++   + N   P+ K+ RT+++R Q  ELEK FH  +YL    R  +A +L +++ Q+K
Sbjct: 152 RRIGHPYQNRTPPKRKKPRTSFSRVQICELEKRFHRQKYLASAERAALAKSLKMTDAQVK 211

Query: 202 IWFQNRRMKWKK 213
            WFQNRR KW++
Sbjct: 212 TWFQNRRTKWRR 223



>gi|1352398|sp|P49640|EVX1_HUMAN   Homeobox even-skipped homolog protein 1 (EVX-1)
          Length = 407

 Score = 66.6 bits (161), Expect = 7e-12
 Identities = 33/57 (57%), Positives = 41/57 (71%)

Query: 157 KRARTAYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLSERQIKIWFQNRRMKWKK 213
           +R RTA+TR Q   LEKEF+   Y++R RR E+A AL L E  IK+WFQNRRMK K+
Sbjct: 184 RRYRTAFTREQIARLEKEFYRENYVSRPRRCELAAALNLPETTIKVWFQNRRMKDKR 240



>gi|20532295|sp|Q9UIW0|VAX2_HUMAN   Ventral anterior homeobox 2
          Length = 290

 Score = 65.5 bits (158), Expect = 1e-11
 Identities = 35/75 (46%), Positives = 46/75 (61%), Gaps = 2/75 (2%)

Query: 157 KRARTAYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLSERQIKIWFQNRRMKWKKDNK 216
           KR RT++T  Q   LE EF   +Y+  R R E+A  L LSE Q+K+WFQNRR K KKD  
Sbjct: 103 KRTRTSFTAEQLYRLEMEFQRCQYVVGRERTELARQLNLSETQVKVWFQNRRTKQKKDQS 162

Query: 217 --LKSMSMAAAGGAF 229
             L+  + ++A  AF
Sbjct: 163 RDLEKRASSSASEAF 177



>gi|29336920|sp|Q9BZE3|BARH1_HUMAN   BarH-like 1 homeobox protein (FKSG31 protein)
          Length = 327

 Score = 65.5 bits (158), Expect = 1e-11
 Identities = 29/70 (41%), Positives = 48/70 (68%)

Query: 157 KRARTAYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLSERQIKIWFQNRRMKWKKDNK 216
           ++ARTA+T +Q  +LE+ F   +YL+ + R+E+A +L L++ Q+K W+QNRR KWK+   
Sbjct: 179 RKARTAFTDHQLAQLERSFERQKYLSVQDRMELAASLNLTDTQVKTWYQNRRTKWKRQTA 238

Query: 217 LKSMSMAAAG 226
           +    +A AG
Sbjct: 239 VGLELLAEAG 248



>gi|2828197|sp|P31271|HXA13_HUMAN   Homeobox protein Hox-A13 (Hox-1J)
          Length = 388

 Score = 65.5 bits (158), Expect = 1e-11
 Identities = 33/67 (49%), Positives = 47/67 (70%), Gaps = 1/67 (1%)

Query: 156 GKRARTAYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLSERQIKIWFQNRRMKWKK-D 214
           G++ R  YT+ Q  ELE+E+  N+++T+ +R  I+    LSERQ+ IWFQNRR+K KK  
Sbjct: 322 GRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKVI 381

Query: 215 NKLKSMS 221
           NKLK+ S
Sbjct: 382 NKLKTTS 388



>gi|20532396|sp|O43763|TLX2_HUMAN   T-cell leukemia homeobox protein 2 (Homeobox protein Hox-11L1)
           (Neural crest homeobox protein)
          Length = 284

 Score = 64.7 bits (156), Expect = 2e-11
 Identities = 29/72 (40%), Positives = 46/72 (63%)

Query: 142 RKLHISHDNIGGPEGKRARTAYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLSERQIK 201
           R++   + N   P+ K+ RT+++R Q LELE+ F   +YL    R  +A AL +++ Q+K
Sbjct: 143 RRIGHPYQNRTPPKRKKPRTSFSRSQVLELERRFLRQKYLASAERAALAKALRMTDAQVK 202

Query: 202 IWFQNRRMKWKK 213
            WFQNRR KW++
Sbjct: 203 TWFQNRRTKWRR 214



>gi|13431329|sp|Q9UMQ3|BARX2_HUMAN   Homeobox protein BarH-like 2
          Length = 254

 Score = 64.3 bits (155), Expect = 3e-11
 Identities = 27/57 (47%), Positives = 42/57 (73%)

Query: 157 KRARTAYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLSERQIKIWFQNRRMKWKK 213
           +R+RT +T  Q + LEK+F   +YL+   R+++A +L L++ Q+K W+QNRRMKWKK
Sbjct: 109 RRSRTIFTELQLMGLEKKFQKQKYLSTPDRLDLAQSLGLTQLQVKTWYQNRRMKWKK 165



>gi|20141538|sp|P31275|HXC12_HUMAN   Homeobox protein Hox-C12 (Hox-3F)
          Length = 282

 Score = 63.5 bits (153), Expect = 6e-11
 Identities = 29/57 (50%), Positives = 42/57 (73%)

Query: 157 KRARTAYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLSERQIKIWFQNRRMKWKK 213
           ++ R  Y++ Q  ELE EF  N ++TR+RR E++  L LS++Q+KIWFQNRRMK K+
Sbjct: 215 RKKRKPYSKLQLAELEGEFLVNEFITRQRRRELSDRLNLSDQQVKIWFQNRRMKKKR 271



>gi|6016210|sp|P78367|NK32_HUMAN   Homeobox protein Nkx-3.2 (Bagpipe homeobox protein homolog 1)
          Length = 333

 Score = 63.2 bits (152), Expect = 7e-11
 Identities = 29/60 (48%), Positives = 41/60 (68%)

Query: 154 PEGKRARTAYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLSERQIKIWFQNRRMKWKK 213
           P  KR+R A++  Q  ELE+ F+  RYL+   R ++A +L L+E Q+KIWFQNRR K K+
Sbjct: 204 PRKKRSRAAFSHAQVFELERRFNHQRYLSGPERADLAASLKLTETQVKIWFQNRRYKTKR 263



>gi|19862512|sp|Q04743|EMX2_HUMAN   Homeobox protein EMX2 (Empty spiracles homolog 2) (Empty
           spiracles-like protein 2)
          Length = 252

 Score = 63.2 bits (152), Expect = 7e-11
 Identities = 36/92 (39%), Positives = 50/92 (54%), Gaps = 16/92 (17%)

Query: 138 YPWM--RKLHISH---DNIGGPEG-----------KRARTAYTRYQTLELEKEFHFNRYL 181
           YPW+  R  ++ H    N   PE            KR RTA++  Q L LE  F  N Y+
Sbjct: 120 YPWLIHRYRYLGHRFQGNDTSPESFLLHNALARKPKRIRTAFSPSQLLRLEHAFEKNHYV 179

Query: 182 TRRRRIEIAHALCLSERQIKIWFQNRRMKWKK 213
               R ++AH+L L+E Q+K+WFQNRR K+K+
Sbjct: 180 VGAERKQLAHSLSLTETQVKVWFQNRRTKFKR 211



>gi|47117915|sp|Q9NY43|BARH2_HUMAN   BarH-like 2 homeobox protein
          Length = 387

 Score = 63.2 bits (152), Expect = 7e-11
 Identities = 28/70 (40%), Positives = 48/70 (68%)

Query: 157 KRARTAYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLSERQIKIWFQNRRMKWKKDNK 216
           ++ARTA++ +Q  +LE+ F   +YL+ + R+++A AL L++ Q+K W+QNRR KWK+   
Sbjct: 233 RKARTAFSDHQLNQLERSFERQKYLSVQDRMDLAAALNLTDTQVKTWYQNRRTKWKRQTA 292

Query: 217 LKSMSMAAAG 226
           +    +A AG
Sbjct: 293 VGLELLAEAG 302



>gi|50403792|sp|Q92826|HXB13_HUMAN   Homeobox protein Hox-B13
          Length = 284

 Score = 62.4 bits (150), Expect = 1e-10
 Identities = 29/58 (50%), Positives = 43/58 (74%)

Query: 156 GKRARTAYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLSERQIKIWFQNRRMKWKK 213
           G++ R  Y++ Q  ELE+E+  N+++T+ +R +I+ A  LSERQI IWFQNRR+K KK
Sbjct: 216 GRKKRIPYSKGQLRELEREYAANKFITKDKRRKISAATSLSERQITIWFQNRRVKEKK 273



>gi|547658|sp|Q03014|HHEX_HUMAN   Homeobox protein PRH (Hematopoietically expressed homeobox)
           (Homeobox protein HEX)
          Length = 270

 Score = 62.4 bits (150), Expect = 1e-10
 Identities = 34/95 (35%), Positives = 52/95 (54%), Gaps = 18/95 (18%)

Query: 137 IYPWMRKLH------ISHDNIGGP------------EGKRARTAYTRYQTLELEKEFHFN 178
           +YP+ R ++      + HD +G P            + K  +  ++  QT+ELEK+F   
Sbjct: 100 LYPFPRTVNDYTHALLRHDPLGKPLLWSPFLQRPLHKRKGGQVRFSNDQTIELEKKFETQ 159

Query: 179 RYLTRRRRIEIAHALCLSERQIKIWFQNRRMKWKK 213
           +YL+   R  +A  L LSERQ+K WFQNRR KW++
Sbjct: 160 KYLSPPERKRLAKMLQLSERQVKTWFQNRRAKWRR 194



>gi|20141539|sp|P31276|HXC13_HUMAN   Homeobox protein Hox-C13 (Hox-3G)
          Length = 330

 Score = 62.0 bits (149), Expect = 2e-10
 Identities = 28/58 (48%), Positives = 41/58 (70%)

Query: 156 GKRARTAYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLSERQIKIWFQNRRMKWKK 213
           G++ R  YT+ Q  ELEKE+  ++++T+ +R  I+    LSERQ+ IWFQNRR+K KK
Sbjct: 260 GRKKRVPYTKVQLKELEKEYAASKFITKEKRRRISATTNLSERQVTIWFQNRRVKEKK 317



>gi|2851475|sp|P35453|HXD13_HUMAN   Homeobox protein Hox-D13 (Hox-4I)
          Length = 335

 Score = 61.2 bits (147), Expect = 3e-10
 Identities = 28/58 (48%), Positives = 40/58 (68%)

Query: 156 GKRARTAYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLSERQIKIWFQNRRMKWKK 213
           G++ R  YT+ Q  ELE E+  N+++ + +R  I+ A  LSERQ+ IWFQNRR+K KK
Sbjct: 268 GRKKRVPYTKLQLKELENEYAINKFINKDKRRRISAATNLSERQVTIWFQNRRVKDKK 325



>gi|57015304|sp|Q04741|EMX1_HUMAN   Homeobox protein EMX1 (Empty spiracles homolog 1) (Empty
           spiracles-like protein 1)
          Length = 257

 Score = 60.8 bits (146), Expect = 4e-10
 Identities = 28/57 (49%), Positives = 39/57 (68%)

Query: 157 KRARTAYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLSERQIKIWFQNRRMKWKK 213
           KR RTA++  Q L LE+ F  N Y+    R ++A +L LSE Q+K+WFQNRR K+K+
Sbjct: 160 KRIRTAFSPSQLLRLERAFEKNHYVVGAERKQLAGSLSLSETQVKVWFQNRRTKYKR 216



>gi|17377578|sp|Q99801|NKX31_HUMAN   Homeobox protein Nkx-3.1
          Length = 234

 Score = 59.3 bits (142), Expect = 1e-09
 Identities = 27/57 (47%), Positives = 39/57 (68%)

Query: 157 KRARTAYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLSERQIKIWFQNRRMKWKK 213
           KR+R A++  Q +ELE++F   +YL+   R  +A  L L+E Q+KIWFQNRR K K+
Sbjct: 125 KRSRAAFSHTQVIELERKFSHQKYLSAPERAHLAKNLKLTETQVKIWFQNRRYKTKR 181



>gi|23503066|sp|P28360|MSX1_HUMAN   Homeobox protein MSX-1 (Hox-7)
          Length = 297

 Score = 58.9 bits (141), Expect = 1e-09
 Identities = 30/70 (42%), Positives = 46/70 (65%), Gaps = 2/70 (2%)

Query: 157 KRARTAYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLSERQIKIWFQNRRMKWKK--D 214
           ++ RT +T  Q L LE++F   +YL+   R E + +L L+E Q+KIWFQNRR K K+  +
Sbjct: 167 RKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNRRAKAKRLQE 226

Query: 215 NKLKSMSMAA 224
            +L+ + MAA
Sbjct: 227 AELEKLKMAA 236



>gi|17380297|sp|Q9Y2V3|RX_HUMAN   Retinal homeobox protein Rx (Retina and anterior neural fold
           homeobox protein)
          Length = 346

 Score = 58.5 bits (140), Expect = 2e-09
 Identities = 28/66 (42%), Positives = 41/66 (62%)

Query: 157 KRARTAYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLSERQIKIWFQNRRMKWKKDNK 216
           +R RT +T YQ  ELE+ F  + Y     R E+A  + L E ++++WFQNRR KW++  K
Sbjct: 137 RRNRTTFTTYQLHELERAFEKSHYPDVYSREELAGKVNLPEVRVQVWFQNRRAKWRRQEK 196

Query: 217 LKSMSM 222
           L+  SM
Sbjct: 197 LEVSSM 202



>gi|13959687|sp|P35548|MSX2_HUMAN   Homeobox protein MSX-2 (Hox-8)
          Length = 267

 Score = 58.2 bits (139), Expect = 2e-09
 Identities = 30/70 (42%), Positives = 46/70 (65%), Gaps = 2/70 (2%)

Query: 157 KRARTAYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLSERQIKIWFQNRRMKWKK--D 214
           ++ RT +T  Q L LE++F   +YL+   R E + +L L+E Q+KIWFQNRR K K+  +
Sbjct: 143 RKPRTPFTTSQLLALERKFRQKQYLSIAERAEFSSSLNLTETQVKIWFQNRRAKAKRLQE 202

Query: 215 NKLKSMSMAA 224
            +L+ + MAA
Sbjct: 203 AELEKLKMAA 212



>gi|27923815|sp|Q8TAU0|NKX23_HUMAN   Homeobox protein Nkx-2.3 (Homeobox protein NKX-2.3) (Homeobox
           protein NK-2 homolog C)
          Length = 364

 Score = 57.8 bits (138), Expect = 3e-09
 Identities = 27/68 (39%), Positives = 42/68 (61%)

Query: 157 KRARTAYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLSERQIKIWFQNRRMKWKKDNK 216
           ++ R  +++ Q  ELE+ F   RYL+   R  +A +L L+  Q+KIWFQNRR K K+  +
Sbjct: 149 RKPRVLFSQAQVFELERRFKQQRYLSAPEREHLASSLKLTSTQVKIWFQNRRYKCKRQRQ 208

Query: 217 LKSMSMAA 224
            KS+ + A
Sbjct: 209 DKSLELGA 216



>gi|48428084|sp|Q8N693|ESX1L_HUMAN   Extraembryonic, spermatogenesis, homeobox 1-like protein
          Length = 406

 Score = 56.6 bits (135), Expect = 7e-09
 Identities = 30/79 (37%), Positives = 46/79 (58%), Gaps = 1/79 (1%)

Query: 154 PEGKRAR-TAYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLSERQIKIWFQNRRMKWK 212
           PE KR R TA+T++Q  ELE  F  ++Y     R  +A  L L+E ++++WFQNRR KWK
Sbjct: 136 PERKRRRRTAFTQFQLQELENFFDESQYPDVVARERLAARLNLTEDRVQVWFQNRRAKWK 195

Query: 213 KDNKLKSMSMAAAGGAFRP 231
           ++ ++  +   A      P
Sbjct: 196 RNQRVLMLRNTATADLAHP 214



>gi|27923733|sp|Q96QS3|ARX_HUMAN   Homeobox protein ARX (Aristaless-related homeobox)
          Length = 562

 Score = 56.6 bits (135), Expect = 7e-09
 Identities = 27/60 (45%), Positives = 37/60 (61%)

Query: 157 KRARTAYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLSERQIKIWFQNRRMKWKKDNK 216
           +R RT +T YQ  ELE+ F    Y     R E+A  L L+E ++++WFQNRR KW+K  K
Sbjct: 329 RRYRTTFTSYQLEELERAFQKTHYPDVFTREELAMRLDLTEARVQVWFQNRRAKWRKREK 388



>gi|6016211|sp|P78426|NK61_HUMAN   Homeobox protein Nkx-6.1
          Length = 367

 Score = 56.6 bits (135), Expect = 7e-09
 Identities = 24/57 (42%), Positives = 35/57 (61%)

Query: 157 KRARTAYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLSERQIKIWFQNRRMKWKK 213
           K  R  ++  Q   LEK F   +YL    R  +A++L ++E Q+K+WFQNRR KW+K
Sbjct: 237 KHTRPTFSGQQIFALEKTFEQTKYLAGPERARLAYSLGMTESQVKVWFQNRRTKWRK 293



>gi|1730095|sp|P52954|LBX1_HUMAN   Transcription factor LBX1
          Length = 280

 Score = 56.6 bits (135), Expect = 7e-09
 Identities = 26/58 (44%), Positives = 39/58 (67%)

Query: 157 KRARTAYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLSERQIKIWFQNRRMKWKKD 214
           +++RTA+T +Q  ELEK F + +YL+   R +IA  L L+  Q+  WFQNRR K K++
Sbjct: 125 RKSRTAFTNHQIYELEKRFLYQKYLSPADRDQIAQQLGLTNAQVITWFQNRRAKLKRE 182



>gi|3913487|sp|O60479|DLX3_HUMAN   Homeobox protein DLX-3
          Length = 287

 Score = 56.2 bits (134), Expect = 9e-09
 Identities = 26/57 (45%), Positives = 37/57 (64%)

Query: 157 KRARTAYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLSERQIKIWFQNRRMKWKK 213
           ++ RT Y+ YQ   L++ F   +YL    R E+A  L L++ Q+KIWFQNRR K+KK
Sbjct: 130 RKPRTIYSSYQLAALQRRFQKAQYLALPERAELAAQLGLTQTQVKIWFQNRRSKFKK 186



>gi|2506529|sp|Q07687|DLX2_HUMAN   Homeobox protein DLX-2
          Length = 328

 Score = 56.2 bits (134), Expect = 9e-09
 Identities = 25/57 (43%), Positives = 38/57 (66%)

Query: 157 KRARTAYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLSERQIKIWFQNRRMKWKK 213
           ++ RT Y+ +Q   L++ F   +YL    R E+A +L L++ Q+KIWFQNRR K+KK
Sbjct: 153 RKPRTIYSSFQLAALQRRFQKTQYLALPERAELAASLGLTQTQVKIWFQNRRSKFKK 209



>gi|2833256|sp|Q14774|HLX1_HUMAN   Homeobox protein HLX1 (Homeobox protein HB24)
          Length = 488

 Score = 56.2 bits (134), Expect = 9e-09
 Identities = 23/61 (37%), Positives = 39/61 (63%)

Query: 159 ARTAYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLSERQIKIWFQNRRMKWKKDNKLK 218
           +R  ++  Q   LEK F   +Y+T+  R ++A  L L++ Q+K+WFQNRRMKW+   + +
Sbjct: 279 SRAVFSNLQRKGLEKRFEIQKYVTKPDRKQLAAMLGLTDAQVKVWFQNRRMKWRHSKEAQ 338

Query: 219 S 219
           +
Sbjct: 339 A 339



>gi|3024482|sp|P78337|PITX1_HUMAN   Pituitary homeobox 1 (Hindlimb expressed homeobox protein backfoot)
          Length = 314

 Score = 55.8 bits (133), Expect = 1e-08
 Identities = 27/70 (38%), Positives = 40/70 (57%)

Query: 157 KRARTAYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLSERQIKIWFQNRRMKWKKDNK 216
           +R RT +T  Q  ELE  F  NRY     R EIA    L+E ++++WF+NRR KW+K  +
Sbjct: 90  RRQRTHFTSQQLQELEATFQRNRYPDMSMREEIAVWTNLTEPRVRVWFKNRRAKWRKRER 149

Query: 217 LKSMSMAAAG 226
            + + +   G
Sbjct: 150 NQQLDLCKGG 159



>gi|6016205|sp|O95096|NKX22_HUMAN   Homeobox protein Nkx-2.2 (Homeobox protein NK-2 homolog B)
          Length = 273

 Score = 55.5 bits (132), Expect = 2e-08
 Identities = 29/73 (39%), Positives = 41/73 (56%), Gaps = 2/73 (2%)

Query: 152 GGPEGKRA--RTAYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLSERQIKIWFQNRRM 209
           GG  GK+   R  +++ QT ELE+ F   RYL+   R  +A  + L+  Q+KIWFQN R 
Sbjct: 122 GGDAGKKRKRRVLFSKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNHRY 181

Query: 210 KWKKDNKLKSMSM 222
           K K+    K M +
Sbjct: 182 KMKRARAEKGMEV 194



>gi|6016208|sp|O15522|NK28_HUMAN   Homeobox protein Nkx-2.8 (Homeobox protein NK-2 homolog H)
          Length = 239

 Score = 55.5 bits (132), Expect = 2e-08
 Identities = 26/57 (45%), Positives = 37/57 (64%)

Query: 157 KRARTAYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLSERQIKIWFQNRRMKWKK 213
           K+ R  +++ QTLELE+ F   RYL+   R ++A  L L+  Q+KIWFQN R K K+
Sbjct: 85  KKRRVLFSKAQTLELERRFRQQRYLSAPEREQLASLLRLTPTQVKIWFQNHRYKLKR 141



>gi|1708211|sp|P52952|NK25_HUMAN   Homeobox protein Nkx-2.5 (Homeobox protein NK-2 homolog E)
           (Cardiac-specific homeobox) (Homeobox protein CSX)
          Length = 324

 Score = 54.7 bits (130), Expect = 3e-08
 Identities = 28/77 (36%), Positives = 44/77 (57%), Gaps = 3/77 (3%)

Query: 149 DNIGGPEGKRAR---TAYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLSERQIKIWFQ 205
           DN   P  +R R     +++ Q  ELE+ F   RYL+   R ++A  L L+  Q+KIWFQ
Sbjct: 128 DNAERPRARRRRKPRVLFSQAQVYELERRFKQQRYLSAPERDQLASVLKLTSTQVKIWFQ 187

Query: 206 NRRMKWKKDNKLKSMSM 222
           NRR K K+  + +++ +
Sbjct: 188 NRRYKCKRQRQDQTLEL 204



>gi|13626112|sp|Q9H161|ALX4_HUMAN   Homeobox protein aristaless-like 4
          Length = 411

 Score = 54.7 bits (130), Expect = 3e-08
 Identities = 26/64 (40%), Positives = 37/64 (57%)

Query: 157 KRARTAYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLSERQIKIWFQNRRMKWKKDNK 216
           +R RT +T YQ  ELEK F    Y     R ++A    L+E ++++WFQNRR KW+K  +
Sbjct: 215 RRNRTTFTSYQLEELEKVFQKTHYPDVYAREQLAMRTDLTEARVQVWFQNRRAKWRKRER 274

Query: 217 LKSM 220
              M
Sbjct: 275 FGQM 278



>gi|6174907|sp|Q99697|PITX2_HUMAN   Pituitary homeobox 2 (RIEG bicoid-related homeobox transcription
           factor) (Solurshin) (ALL1 responsive protein ARP1)
          Length = 317

 Score = 54.3 bits (129), Expect = 3e-08
 Identities = 27/70 (38%), Positives = 39/70 (55%)

Query: 157 KRARTAYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLSERQIKIWFQNRRMKWKKDNK 216
           +R RT +T  Q  ELE  F  NRY     R EIA    L+E ++++WF+NRR KW+K  +
Sbjct: 86  RRQRTHFTSQQLQELEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRKRER 145

Query: 217 LKSMSMAAAG 226
            +   +   G
Sbjct: 146 NQQAELCKNG 155



>gi|6174889|sp|P26367|PAX6_HUMAN   Paired box protein Pax-6 (Oculorhombin) (Aniridia, type II protein)
          Length = 422

 Score = 53.9 bits (128), Expect = 4e-08
 Identities = 26/69 (37%), Positives = 41/69 (59%)

Query: 157 KRARTAYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLSERQIKIWFQNRRMKWKKDNK 216
           +R RT++T+ Q   LEKEF    Y     R  +A  + L E +I++WF NRR KW+++ K
Sbjct: 211 QRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEK 270

Query: 217 LKSMSMAAA 225
           L++    A+
Sbjct: 271 LRNQRRQAS 279



>gi|6093723|sp|O75364|PITX3_HUMAN   Pituitary homeobox 3 (Homeobox protein PITX3)
          Length = 302

 Score = 53.5 bits (127), Expect = 6e-08
 Identities = 26/57 (45%), Positives = 35/57 (61%)

Query: 157 KRARTAYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLSERQIKIWFQNRRMKWKK 213
           +R RT +T  Q  ELE  F  NRY     R EIA    L+E ++++WF+NRR KW+K
Sbjct: 63  RRQRTHFTSQQLQELEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRK 119



>gi|12644329|sp|P56178|DLX5_HUMAN   Homeobox protein DLX-5
          Length = 289

 Score = 53.5 bits (127), Expect = 6e-08
 Identities = 24/57 (42%), Positives = 37/57 (64%)

Query: 157 KRARTAYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLSERQIKIWFQNRRMKWKK 213
           ++ RT Y+ +Q   L++ F   +YL    R E+A +L L++ Q+KIWFQN+R K KK
Sbjct: 138 RKPRTIYSSFQLAALQRRFQKTQYLALPERAELAASLGLTQTQVKIWFQNKRSKIKK 194



>gi|3914276|sp|O43316|PAX4_HUMAN   Paired box protein Pax-4
          Length = 350

 Score = 53.1 bits (126), Expect = 7e-08
 Identities = 26/63 (41%), Positives = 36/63 (57%)

Query: 156 GKRARTAYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLSERQIKIWFQNRRMKWKKDN 215
           G R RT ++  Q   LEKEF   +Y     R ++A A  L E  +++WF NRR KW++  
Sbjct: 170 GHRNRTIFSPSQAEALEKEFQRGQYPDSVARGKLATATSLPEDTVRVWFSNRRAKWRRQE 229

Query: 216 KLK 218
           KLK
Sbjct: 230 KLK 232



>gi|8247951|sp|P23759|PAX7_HUMAN   Paired box protein Pax-7 (HUP1)
          Length = 520

 Score = 52.4 bits (124), Expect = 1e-07
 Identities = 27/74 (36%), Positives = 41/74 (55%), Gaps = 3/74 (4%)

Query: 157 KRARTAYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLSERQIKIWFQNRRMKWKKD-- 214
           +R+RT +T  Q  ELEK F    Y     R E+A    L+E ++++WF NRR +W+K   
Sbjct: 218 RRSRTTFTAEQLEELEKAFERTHYPDIYTREELAQRTKLTEARVQVWFSNRRARWRKQAG 277

Query: 215 -NKLKSMSMAAAGG 227
            N+L + +    GG
Sbjct: 278 ANQLAAFNHLLPGG 291



>gi|3023579|sp|Q15699|CRT1_HUMAN   Cartilage homeoprotein 1 (CART-1)
          Length = 326

 Score = 52.4 bits (124), Expect = 1e-07
 Identities = 26/74 (35%), Positives = 40/74 (54%)

Query: 150 NIGGPEGKRARTAYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLSERQIKIWFQNRRM 209
           N+   + +R RT +T  Q  ELEK F    Y     R ++A    L+E ++++WFQNRR 
Sbjct: 126 NVSSSKKRRHRTTFTSLQLEELEKVFQKTHYPDVYVREQLALRTELTEARVQVWFQNRRA 185

Query: 210 KWKKDNKLKSMSMA 223
           KW+K  +   +  A
Sbjct: 186 KWRKRERYGQIQQA 199



>gi|38605720|sp|P56177|DLX1_HUMAN   Homeobox protein DLX-1
          Length = 255

 Score = 52.4 bits (124), Expect = 1e-07
 Identities = 25/61 (40%), Positives = 37/61 (60%)

Query: 153 GPEGKRARTAYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLSERQIKIWFQNRRMKWK 212
           G + ++ RT Y   Q   L + F   +YL    R E+A +L L++ Q+KIWFQN+R K+K
Sbjct: 125 GKKIRKPRTIYCSLQLQALNRRFQQTQYLALPERAELAASLGLTQTQVKIWFQNKRSKFK 184

Query: 213 K 213
           K
Sbjct: 185 K 185



>gi|12644330|sp|P56179|DLX6_HUMAN   Homeobox protein DLX-6
          Length = 175

 Score = 52.0 bits (123), Expect = 2e-07
 Identities = 25/61 (40%), Positives = 37/61 (60%)

Query: 153 GPEGKRARTAYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLSERQIKIWFQNRRMKWK 212
           G + ++ RT Y+  Q   L   F   +YL    R E+A +L L++ Q+KIWFQN+R K+K
Sbjct: 46  GKKIRKPRTIYSSLQLQALNHRFQQTQYLALPERAELAASLGLTQTQVKIWFQNKRSKFK 105

Query: 213 K 213
           K
Sbjct: 106 K 106



>gi|17374365|sp|P58304|CHX10_HUMAN   Homeobox protein CHX10 (Ceh-10 homeodomain containing homolog)
          Length = 361

 Score = 52.0 bits (123), Expect = 2e-07
 Identities = 29/69 (42%), Positives = 37/69 (53%)

Query: 157 KRARTAYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLSERQIKIWFQNRRMKWKKDNK 216
           +R RT +T YQ  ELEK F+   Y     R  +A    L E +I++WFQNRR KW+K  K
Sbjct: 149 RRHRTIFTSYQLEELEKAFNEAHYPDVYAREMLAMKTELPEDRIQVWFQNRRAKWRKREK 208

Query: 217 LKSMSMAAA 225
               S   A
Sbjct: 209 CWGRSSVMA 217



>gi|12230168|sp|Q9UBX0|HESX1_HUMAN   Homeobox expressed in ES cells 1 (Homeobox protein ANF) (hAnf)
          Length = 185

 Score = 51.6 bits (122), Expect = 2e-07
 Identities = 29/68 (42%), Positives = 39/68 (57%)

Query: 156 GKRARTAYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLSERQIKIWFQNRRMKWKKDN 215
           G+R RTA+T+ Q   LE  F  N Y     R ++A  L L E +I+IWFQNRR K K+ +
Sbjct: 108 GRRPRTAFTQNQIEVLENVFRVNCYPGIDIREDLAQKLNLEEDRIQIWFQNRRAKLKRSH 167

Query: 216 KLKSMSMA 223
           +     MA
Sbjct: 168 RESQFLMA 175



>gi|8134644|sp|Q99453|PHX2B_HUMAN   Paired mesoderm homeobox protein 2B (Paired-like homeobox 2B)
           (PHOX2B homeodomain protein) (Neuroblastoma Phox)
           (NBPhox)
          Length = 314

 Score = 51.6 bits (122), Expect = 2e-07
 Identities = 26/69 (37%), Positives = 41/69 (59%)

Query: 157 KRARTAYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLSERQIKIWFQNRRMKWKKDNK 216
           +R RT +T  Q  ELE+ F    Y     R E+A  + L+E ++++WFQNRR K++K  +
Sbjct: 99  RRIRTTFTSAQLKELERVFAETHYPDIYTREELALKIDLTEARVQVWFQNRRAKFRKQER 158

Query: 217 LKSMSMAAA 225
             + + AAA
Sbjct: 159 AAAAAAAAA 167



>gi|3915680|sp|Q92988|DLX4_HUMAN   Homeobox protein DLX-4 (DLX-7) (DLX-8)
          Length = 347

 Score = 51.6 bits (122), Expect = 2e-07
 Identities = 23/57 (40%), Positives = 35/57 (61%)

Query: 157 KRARTAYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLSERQIKIWFQNRRMKWKK 213
           ++ RT Y+  Q   L + F   +YL    R ++A  L L++ Q+KIWFQN+R K+KK
Sbjct: 226 RKPRTIYSSLQLQHLNQRFQHTQYLALPERAQLAAQLGLTQTQVKIWFQNKRSKYKK 282



>gi|1172022|sp|P23760|PAX3_HUMAN   Paired box protein Pax-3 (HUP2)
          Length = 479

 Score = 51.2 bits (121), Expect = 3e-07
 Identities = 26/74 (35%), Positives = 41/74 (55%), Gaps = 3/74 (4%)

Query: 157 KRARTAYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLSERQIKIWFQNRRMKWKKD-- 214
           +R+RT +T  Q  ELE+ F    Y     R E+A    L+E ++++WF NRR +W+K   
Sbjct: 220 RRSRTTFTAEQLEELERAFERTHYPDIYTREELAQRAKLTEARVQVWFSNRRARWRKQAG 279

Query: 215 -NKLKSMSMAAAGG 227
            N+L + +    GG
Sbjct: 280 ANQLMAFNHLIPGG 293



>gi|27923817|sp|Q9H2Z4|NK24_HUMAN   Homeobox protein Nkx-2.4 (Homeobox protein NKX2.4) (Homeobox
           protein NK-2 homolog D)
          Length = 353

 Score = 51.2 bits (121), Expect = 3e-07
 Identities = 25/75 (33%), Positives = 39/75 (52%)

Query: 157 KRARTAYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLSERQIKIWFQNRRMKWKKDNK 216
           ++ R  +++ Q  ELE+ F   +YL+   R  +A  + L+  Q+KIWFQN R K K+  K
Sbjct: 190 RKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQAK 249

Query: 217 LKSMSMAAAGGAFRP 231
            K+       G   P
Sbjct: 250 DKAAQQLQQEGGLGP 264



>gi|8134640|sp|O14813|PHX2A_HUMAN   Paired mesoderm homeobox protein 2A (Paired-like homeobox 2A)
           (Aristaless homeobox protein homolog) (ARIX1 homeodomain
           protein)
          Length = 284

 Score = 50.8 bits (120), Expect = 4e-07
 Identities = 28/72 (38%), Positives = 42/72 (58%), Gaps = 1/72 (1%)

Query: 157 KRARTAYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLSERQIKIWFQNRRMKWKKDNK 216
           +R RT +T  Q  ELE+ F    Y     R E+A  + L+E ++++WFQNRR K++K  +
Sbjct: 91  RRIRTTFTSAQLKELERVFAETHYPDIYTREELALKIDLTEARVQVWFQNRRAKFRKQER 150

Query: 217 LKSMSMAAAGGA 228
             S +  AAG A
Sbjct: 151 AAS-AKGAAGAA 161



>gi|25009572|sp|Q9NZR4|VSX1_HUMAN   Visual system homeobox 1 (Transcription factor VSX1) (Retinal inner
           nuclear layer homeobox protein) (Homeodomain protein
           RINX)
          Length = 365

 Score = 50.1 bits (118), Expect = 6e-07
 Identities = 27/66 (40%), Positives = 37/66 (56%)

Query: 151 IGGPEGKRARTAYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLSERQIKIWFQNRRMK 210
           +G  + +R RT +T +Q  ELEK F    Y     R  +A    L E +I++WFQNRR K
Sbjct: 159 LGKRKKRRHRTVFTAHQLEELEKAFSEAHYPDVYAREMLAVKTELPEDRIQVWFQNRRAK 218

Query: 211 WKKDNK 216
           W+K  K
Sbjct: 219 WRKREK 224



>gi|13626107|sp|O95076|ALX3_HUMAN   Homeobox protein aristaless-like 3 (Proline-rich transcription
           factor ALX3)
          Length = 343

 Score = 50.1 bits (118), Expect = 6e-07
 Identities = 23/57 (40%), Positives = 35/57 (61%)

Query: 157 KRARTAYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLSERQIKIWFQNRRMKWKK 213
           +R RT ++ +Q  ELEK F    Y     R ++A    L+E ++++WFQNRR KW+K
Sbjct: 154 RRNRTTFSTFQLEELEKVFQKTHYPDVYAREQLALRTDLTEARVQVWFQNRRAKWRK 210



>gi|1174819|sp|P43699|TITF1_HUMAN   Thyroid transcription factor 1 (Thyroid nuclear factor 1) (TTF-1)
           (Homeobox protein Nkx-2.1) (Homeobox protein NK-2
           homolog A)
          Length = 371

 Score = 49.3 bits (116), Expect = 1e-06
 Identities = 23/63 (36%), Positives = 37/63 (58%)

Query: 157 KRARTAYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLSERQIKIWFQNRRMKWKKDNK 216
           ++ R  +++ Q  ELE+ F   +YL+   R  +A  + L+  Q+KIWFQN R K K+  K
Sbjct: 162 RKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQAK 221

Query: 217 LKS 219
            K+
Sbjct: 222 DKA 224



>gi|18202099|sp|O60902|SHOX2_HUMAN   Short stature homeobox protein 2 (Paired-related homeobox protein
           SHOT) (Homeobox protein Og12X)
          Length = 331

 Score = 49.3 bits (116), Expect = 1e-06
 Identities = 28/74 (37%), Positives = 42/74 (56%), Gaps = 1/74 (1%)

Query: 157 KRARTAYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLSERQIKIWFQNRRMKWKK-DN 215
           +R+RT +T  Q  ELE+ F    Y     R E++  L LSE ++++WFQNRR K +K +N
Sbjct: 141 RRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQVWFQNRRAKCRKQEN 200

Query: 216 KLKSMSMAAAGGAF 229
           +L    +  A   F
Sbjct: 201 QLHKGVLIGAASQF 214



>gi|6831676|sp|O15266|SHOX_HUMAN   Short stature homeobox protein (Short stature homeobox containing
           protein) (Pseudoautosomal homeobox containing osteogenic
           protein)
          Length = 292

 Score = 47.4 bits (111), Expect = 4e-06
 Identities = 24/57 (42%), Positives = 35/57 (61%)

Query: 157 KRARTAYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLSERQIKIWFQNRRMKWKK 213
           +R+RT +T  Q  ELE+ F    Y     R E++  L LSE ++++WFQNRR K +K
Sbjct: 118 RRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQVWFQNRRAKCRK 174



>gi|3287764|sp|O43186|CRX_HUMAN   Cone-rod homeobox protein
          Length = 299

 Score = 46.6 bits (109), Expect = 7e-06
 Identities = 24/71 (33%), Positives = 38/71 (53%)

Query: 157 KRARTAYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLSERQIKIWFQNRRMKWKKDNK 216
           +R RT +TR Q  ELE  F   +Y     R E+A  + L E ++++WF+NRR K ++  +
Sbjct: 40  RRERTTFTRSQLEELEALFAKTQYPDVYAREEVALKINLPESRVQVWFKNRRAKCRQQRQ 99

Query: 217 LKSMSMAAAGG 227
            +       GG
Sbjct: 100 QQKQQQQPPGG 110



>gi|12644475|sp|Q99811|PRRX2_HUMAN   Paired mesoderm homeobox protein 2 (PRX-2) (Paired related homeobox
           protein 2)
          Length = 253

 Score = 46.2 bits (108), Expect = 9e-06
 Identities = 23/69 (33%), Positives = 39/69 (56%)

Query: 157 KRARTAYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLSERQIKIWFQNRRMKWKKDNK 216
           +R RT +   Q   LE+ F    Y     R E+A  + LSE ++++WFQNRR K++++ +
Sbjct: 105 RRNRTTFNSSQLQALERVFERTHYPDAFVREELARRVNLSEARVQVWFQNRRAKFRRNER 164

Query: 217 LKSMSMAAA 225
               S +A+
Sbjct: 165 AMLASRSAS 173



>gi|7531125|sp|P56915|GSC_HUMAN   Homeobox protein goosecoid
          Length = 252

 Score = 45.4 bits (106), Expect = 2e-05
 Identities = 21/63 (33%), Positives = 35/63 (55%)

Query: 157 KRARTAYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLSERQIKIWFQNRRMKWKKDNK 216
           +R RT +T  Q   LE  F   +Y     R ++A  + L E ++++WF+NRR KW++  +
Sbjct: 156 RRHRTIFTDEQLEALENLFQETKYPDVGTREQLARKVHLREEKVEVWFKNRRAKWRRQKR 215

Query: 217 LKS 219
             S
Sbjct: 216 SSS 218



>gi|6093787|sp|O75360|PROP1_HUMAN   Homeobox protein prophet of Pit-1 (PROP-1) (Pituitary specific
           homeodomain factor)
          Length = 226

 Score = 45.1 bits (105), Expect = 2e-05
 Identities = 31/89 (34%), Positives = 44/89 (49%), Gaps = 9/89 (10%)

Query: 152 GGPEGK-----RARTAYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLSERQIKIWFQN 206
           GG  G+     R RT ++  Q  +LE  F  N+Y     R  +A    LSE +I++WFQN
Sbjct: 60  GGQRGRPHSRRRHRTTFSPVQLEQLESAFGRNQYPDIWARESLARDTGLSEARIQVWFQN 119

Query: 207 RRMKWKKDNKLKSMSMA----AAGGAFRP 231
           RR K +K  +     +A    AA  +F P
Sbjct: 120 RRAKQRKQERSLLQPLAHLSPAAFSSFLP 148



>gi|28380240|sp|Q9C0A1|ZFHX2_HUMAN   Zinc finger homeobox protein 2
          Length = 1427

 Score = 44.3 bits (103), Expect = 3e-05
 Identities = 27/75 (36%), Positives = 39/75 (52%), Gaps = 2/75 (2%)

Query: 154 PEGKR-ARTAYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLSERQIKIWFQNRRMKWK 212
           P G+R +RT +T +QT  L+  F  + Y        +A  L L+ R + +WFQN R K +
Sbjct: 447 PAGRRFSRTKFTEFQTQALQSFFETSAYPKDGEVERLASLLGLASRVVVVWFQNARQKAR 506

Query: 213 KDNKLKSMSMAAAGG 227
           K N  +  SM   GG
Sbjct: 507 K-NACEGGSMPTGGG 520



 Score = 33.9 bits (76), Expect = 0.047
 Identities = 24/80 (30%), Positives = 40/80 (50%), Gaps = 4/80 (5%)

Query: 152 GGPEG---KRARTAYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLSERQIKIWFQNRR 208
           G P+G   +R RT  +  Q   ++  +   R  T +    +   + L +R I++WFQN R
Sbjct: 913 GVPDGMGQRRYRTQMSSLQLKIMKACYEAYRTPTMQECEVLGEEIGLPKRVIQVWFQNAR 972

Query: 209 MKWKKDNKLKSMSMAAAGGA 228
            K KK  KL+  +  + GG+
Sbjct: 973 AKEKK-AKLQGTAAGSTGGS 991



 Score = 32.0 bits (71), Expect = 0.18
 Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 5/67 (7%)

Query: 152 GGPEGKRARTAYTRYQTLELEKEFHFNRYL-----TRRRRIEIAHALCLSERQIKIWFQN 206
           GG EG+  R    R   L  + E  +  Y+     TR+    I+  + L +R +++WFQN
Sbjct: 703 GGGEGEPPRDKRLRTTILPEQLEILYRWYMQDSNPTRKMLDCISEEVGLKKRVVQVWFQN 762

Query: 207 RRMKWKK 213
            R + +K
Sbjct: 763 TRARERK 769



>gi|417425|sp|P32242|OTX1_HUMAN   Homeobox protein OTX1
          Length = 354

 Score = 43.9 bits (102), Expect = 5e-05
 Identities = 25/77 (32%), Positives = 42/77 (54%), Gaps = 4/77 (5%)

Query: 144 LHISHDNIGGP----EGKRARTAYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLSERQ 199
           + + H ++G P    + +R RT +TR Q   LE  F   RY     R E+A  + L E +
Sbjct: 22  MDLLHPSVGYPATPRKQRRERTTFTRSQLDVLEALFAKTRYPDIFMREEVALKINLPESR 81

Query: 200 IKIWFQNRRMKWKKDNK 216
           +++WF+NRR K ++  +
Sbjct: 82  VQVWFKNRRAKCRQQQQ 98



>gi|417427|sp|P32243|OTX2_HUMAN   Homeobox protein OTX2
          Length = 289

 Score = 43.9 bits (102), Expect = 5e-05
 Identities = 25/77 (32%), Positives = 42/77 (54%), Gaps = 4/77 (5%)

Query: 144 LHISHDNIGGP----EGKRARTAYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLSERQ 199
           + + H ++G P    + +R RT +TR Q   LE  F   RY     R E+A  + L E +
Sbjct: 22  MDLLHPSVGYPATPRKQRRERTTFTRAQLDVLEALFAKTRYPDIFMREEVALKINLPESR 81

Query: 200 IKIWFQNRRMKWKKDNK 216
           +++WF+NRR K ++  +
Sbjct: 82  VQVWFKNRRAKCRQQQQ 98



>gi|37537987|sp|Q9BQY4|PEP2_HUMAN   Paired-like homeobox protein PEPP-2 (Testis homeobox gene 1)
          Length = 288

 Score = 43.5 bits (101), Expect = 6e-05
 Identities = 22/70 (31%), Positives = 40/70 (57%), Gaps = 4/70 (5%)

Query: 151 IGGPEGKRART----AYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLSERQIKIWFQN 206
           +GG E   A+     A+T  Q  ELE+ F   ++ +   R  +A ++ ++E  ++IWF+N
Sbjct: 125 VGGLEPGNAQQPNVHAFTPLQLQELERIFQREQFPSEFLRRRLARSMNVTELAVQIWFEN 184

Query: 207 RRMKWKKDNK 216
           RR KW++  +
Sbjct: 185 RRAKWRRHQR 194



>gi|6685480|sp|O15499|GSCL_HUMAN   Homeobox protein goosecoid-like (GSC-2)
          Length = 205

 Score = 43.5 bits (101), Expect = 6e-05
 Identities = 21/70 (30%), Positives = 36/70 (51%)

Query: 157 KRARTAYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLSERQIKIWFQNRRMKWKKDNK 216
           +R RT ++  Q   LE  F  N+Y     R  +A  + L E ++++WF+NRR KW+   +
Sbjct: 127 RRHRTIFSEEQLQALEALFVQNQYPDVSTRERLAGRIRLREERVEVWFKNRRAKWRHQKR 186

Query: 217 LKSMSMAAAG 226
             + +    G
Sbjct: 187 ASASARLLPG 196



>gi|6174916|sp|P54821|PRRX1_HUMAN   Paired mesoderm homeobox protein 1 (PRX-1) (Paired related homeobox
           protein 1) (Homeobox protein PHOX1)
          Length = 245

 Score = 42.4 bits (98), Expect = 1e-04
 Identities = 19/60 (31%), Positives = 35/60 (58%)

Query: 157 KRARTAYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLSERQIKIWFQNRRMKWKKDNK 216
           +R RT +   Q   LE+ F    Y     R ++A  + L+E ++++WFQNRR K++++ +
Sbjct: 95  RRNRTTFNSSQLQALERVFERTHYPDAFVREDLARRVNLTEARVQVWFQNRRAKFRRNER 154



>gi|37537960|sp|Q8NHV9|PEPP1_HUMAN   Paired-like homeobox protein PEPP-1 (Ovary-, testis- and
           epididymis-expressed gene protein)
          Length = 184

 Score = 40.0 bits (92), Expect = 7e-04
 Identities = 18/57 (31%), Positives = 33/57 (57%)

Query: 160 RTAYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLSERQIKIWFQNRRMKWKKDNK 216
           RT +T  Q  ELE  F   +Y     R E+A  L ++E ++++WF+N+R + ++  +
Sbjct: 107 RTKFTLLQVEELESVFRHTQYPDVPTRRELAENLGVTEDKVRVWFKNKRARCRRHQR 163



>gi|123402|sp|P09086|PO2F2_HUMAN   POU domain, class 2, transcription factor 2 (Octamer-binding
           transcription factor 2) (Oct-2) (OTF-2)
           (Lymphoid-restricted immunoglobulin octamer binding
           protein NF-A2)
          Length = 479

 Score = 38.5 bits (88), Expect = 0.002
 Identities = 25/82 (30%), Positives = 38/82 (46%), Gaps = 1/82 (1%)

Query: 146 ISHDNIGGPEGKRARTAYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLSERQIKIWFQ 205
           +  D + G   K+ RT+        LEK F  N+  T    + IA  L + +  I++WF 
Sbjct: 288 LGFDGLPGRRRKK-RTSIETNVRFALEKSFLANQKPTSEEILLIAEQLHMEKEVIRVWFC 346

Query: 206 NRRMKWKKDNKLKSMSMAAAGG 227
           NRR K K+ N   +  M  + G
Sbjct: 347 NRRQKEKRINPCSAAPMLPSPG 368



>gi|18202510|sp|Q15911|ATBF1_HUMAN   Alpha-fetoprotein enhancer binding protein (AT motif-binding factor)
            (AT-binding transcription factor 1)
          Length = 3703

 Score = 38.5 bits (88), Expect = 0.002
 Identities = 23/65 (35%), Positives = 35/65 (53%), Gaps = 3/65 (4%)

Query: 152  GGPE---GKRARTAYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLSERQIKIWFQNRR 208
            GG E    KR RT  T  Q   L +++  +   TR+    IAH + L +R +++WFQN R
Sbjct: 2634 GGEEPQRDKRLRTTITPEQLEILYQKYLLDSNPTRKMLDHIAHEVGLKKRVVQVWFQNTR 2693

Query: 209  MKWKK 213
             + +K
Sbjct: 2694 ARERK 2698



 Score = 37.4 bits (85), Expect = 0.004
 Identities = 20/58 (34%), Positives = 31/58 (53%)

Query: 157  KRARTAYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLSERQIKIWFQNRRMKWKKD 214
            + +RT +T YQ   L+  F  N Y       ++++ L L  R I +WFQN R K +K+
Sbjct: 2243 RSSRTRFTDYQLRVLQDFFDANAYPKDDEFEQLSNLLNLPTRVIVVWFQNARQKARKN 2300



 Score = 35.0 bits (79), Expect = 0.021
 Identities = 23/67 (34%), Positives = 33/67 (49%)

Query: 147  SHDNIGGPEGKRARTAYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLSERQIKIWFQN 206
            S D+   P  KR RT  T  Q   L+  F+  R  T      + + + L +R +++WFQN
Sbjct: 2937 SGDSGDRPGQKRFRTQMTNLQLKVLKSCFNDYRTPTMLECEVLGNDIGLPKRVVQVWFQN 2996

Query: 207  RRMKWKK 213
             R K KK
Sbjct: 2997 ARAKEKK 3003



 Score = 32.7 bits (73), Expect = 0.10
 Identities = 20/62 (32%), Positives = 30/62 (48%)

Query: 155  EGKRARTAYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLSERQIKIWFQNRRMKWKKD 214
            + KR RT  T  Q   L + F  N   +  +  E+A    L ++ IK WF+N   K ++ 
Sbjct: 2144 QNKRPRTRITDDQLRVLRQYFDINNSPSEEQIKEMADKSGLPQKVIKHWFRNTLFKERQR 2203

Query: 215  NK 216
            NK
Sbjct: 2204 NK 2205



>gi|27923801|sp|Q8TE12|LMX1A_HUMAN   LIM homeobox transcription factor 1 alpha (LIM/homeobox protein
           LMX1A) (LIM-homeobox protein 1.1) (LMX-1.1)
          Length = 382

 Score = 38.1 bits (87), Expect = 0.002
 Identities = 21/57 (36%), Positives = 29/57 (50%)

Query: 157 KRARTAYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLSERQIKIWFQNRRMKWKK 213
           KR RT  T  Q    +  F  +    R+ R  +A    LS R +++WFQN+R K KK
Sbjct: 196 KRPRTILTTQQRRAFKASFEVSSKPCRKVRETLAAETGLSVRVVQVWFQNQRAKMKK 252



>gi|8247930|sp|O60663|LMX1B_HUMAN   LIM homeobox transcription factor 1 beta (LIM/homeobox protein
           LMX1B) (LIM-homeobox protein 1.2) (LMX-1.2)
          Length = 379

 Score = 38.1 bits (87), Expect = 0.002
 Identities = 21/57 (36%), Positives = 29/57 (50%)

Query: 157 KRARTAYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLSERQIKIWFQNRRMKWKK 213
           KR RT  T  Q    +  F  +    R+ R  +A    LS R +++WFQN+R K KK
Sbjct: 197 KRPRTILTTQQRRAFKASFEVSSKPCRKVRETLAAETGLSVRVVQVWFQNQRAKMKK 253



>gi|8247936|sp|P50458|LHX2_HUMAN   LIM/homeobox protein Lhx2 (Homeobox protein LH-2)
          Length = 406

 Score = 37.0 bits (84), Expect = 0.006
 Identities = 16/58 (27%), Positives = 33/58 (56%)

Query: 157 KRARTAYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLSERQIKIWFQNRRMKWKKD 214
           KR RT++  +Q   ++  F  N     +   ++A    L++R +++WFQN R K++++
Sbjct: 267 KRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQVWFQNARAKFRRN 324



>gi|12643346|sp|Q9NQ69|LHX9_HUMAN   LIM/homeobox protein Lhx9
          Length = 388

 Score = 37.0 bits (84), Expect = 0.006
 Identities = 16/58 (27%), Positives = 33/58 (56%)

Query: 157 KRARTAYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLSERQIKIWFQNRRMKWKKD 214
           KR RT++  +Q   ++  F  N     +   ++A    L++R +++WFQN R K++++
Sbjct: 259 KRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQVWFQNARAKFRRN 316



>gi|8134548|sp|Q9UPM6|LHX61_HUMAN   LIM/homeobox protein Lhx6.1 (Lhx6)
          Length = 363

 Score = 37.0 bits (84), Expect = 0.006
 Identities = 20/57 (35%), Positives = 32/57 (56%)

Query: 157 KRARTAYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLSERQIKIWFQNRRMKWKK 213
           KRART++T  Q   ++ +F  +     +   ++A    LS R I++WFQN R + KK
Sbjct: 220 KRARTSFTAEQLQVMQAQFAQDNNPDAQTLQKLADMTGLSRRVIQVWFQNCRARHKK 276



>gi|12643415|sp|Q9UBR4|LHX3_HUMAN   LIM/homeobox protein Lhx3
          Length = 397

 Score = 36.2 bits (82), Expect = 0.009
 Identities = 20/60 (33%), Positives = 31/60 (51%)

Query: 157 KRARTAYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLSERQIKIWFQNRRMKWKKDNK 216
           KR RT  T  Q   L+  ++ +    R  R +++    L  R +++WFQNRR K K+  K
Sbjct: 158 KRPRTTITAKQLETLKSAYNTSPKPARHVREQLSSETGLDMRVVQVWFQNRRAKEKRLKK 217



>gi|47117872|sp|P78412|IRX6_HUMAN   Iroquois-class homeodomain protein IRX-6 (Iroquois homeobox protein
           6) (Homeodomain protein IRXB3)
          Length = 445

 Score = 36.2 bits (82), Expect = 0.009
 Identities = 27/86 (31%), Positives = 40/86 (46%), Gaps = 6/86 (6%)

Query: 138 YPWMRKL-HISHDNIGGPE--GKRARTAYTRYQTLELE---KEFHFNRYLTRRRRIEIAH 191
           YP+ R L    ++  G  E  G   R   TR  T  L+    E   N Y T+  +I +A 
Sbjct: 125 YPYERTLGQYQYERYGAVELSGAGRRKNATRETTSTLKAWLNEHRKNPYPTKGEKIMLAI 184

Query: 192 ALCLSERQIKIWFQNRRMKWKKDNKL 217
              ++  Q+  WF N R + KK+NK+
Sbjct: 185 ITKMTLTQVSTWFANARRRLKKENKM 210



>gi|12644347|sp|P78413|IRX4_HUMAN   Iroquois-class homeodomain protein IRX-4 (Iroquois homeobox protein
           4) (Homeodomain protein IRXA3)
          Length = 519

 Score = 35.8 bits (81), Expect = 0.012
 Identities = 25/84 (29%), Positives = 39/84 (46%), Gaps = 4/84 (4%)

Query: 138 YPWMRKL-HISHDNIGGPEGKRARTAYTRYQTLELE---KEFHFNRYLTRRRRIEIAHAL 193
           YP+   L    +D  G  +    R   TR  T  L+   +E   N Y T+  +I +A   
Sbjct: 123 YPYEPALGQYPYDRYGTMDSGTRRKNATRETTSTLKAWLQEHRKNPYPTKGEKIMLAIIT 182

Query: 194 CLSERQIKIWFQNRRMKWKKDNKL 217
            ++  Q+  WF N R + KK+NK+
Sbjct: 183 KMTLTQVSTWFANARRRLKKENKM 206



>gi|60416412|sp|P48742|LHX1_HUMAN   LIM/homeobox protein Lhx1 (LIM homeobox protein 1) (Homeobox
           protein Lim-1)
          Length = 406

 Score = 35.4 bits (80), Expect = 0.016
 Identities = 21/68 (30%), Positives = 34/68 (50%)

Query: 153 GPEGKRARTAYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLSERQIKIWFQNRRMKWK 212
           G + +  RT     Q   L+  F      TR  R ++A    L+ R I++WFQNRR K +
Sbjct: 177 GAKRRGPRTTIKAKQLETLKAAFAATPKPTRHIREQLAQETGLNMRVIQVWFQNRRSKER 236

Query: 213 KDNKLKSM 220
           +  +L ++
Sbjct: 237 RMKQLSAL 244



>gi|18202938|sp|Q9H2C1|LHX5_HUMAN   LIM/homeobox protein Lhx5
          Length = 402

 Score = 35.4 bits (80), Expect = 0.016
 Identities = 21/68 (30%), Positives = 34/68 (50%)

Query: 153 GPEGKRARTAYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLSERQIKIWFQNRRMKWK 212
           G + +  RT     Q   L+  F      TR  R ++A    L+ R I++WFQNRR K +
Sbjct: 177 GTKRRGPRTTIKAKQLETLKAAFAATPKPTRHIREQLAQETGLNMRVIQVWFQNRRSKER 236

Query: 213 KDNKLKSM 220
           +  +L ++
Sbjct: 237 RMKQLSAL 244



>gi|2495300|sp|Q12837|PO42_HUMAN   POU domain, class 4, transcription factor 2 (Brain-specific
           homeobox/POU domain protein 3B) (Brn-3B)
          Length = 410

 Score = 35.4 bits (80), Expect = 0.016
 Identities = 22/81 (27%), Positives = 35/81 (43%), Gaps = 7/81 (8%)

Query: 140 WMRKLHISH-------DNIGGPEGKRARTAYTRYQTLELEKEFHFNRYLTRRRRIEIAHA 192
           W+ +   SH       +   G E KR RT+    +   LE  F      +  +   IA  
Sbjct: 323 WLEEAEKSHREKLTKPELFNGAEKKRKRTSIAAPEKRSLEAYFAIQPRPSSEKIAAIAEK 382

Query: 193 LCLSERQIKIWFQNRRMKWKK 213
           L L +  +++WF N+R K K+
Sbjct: 383 LDLKKNVVRVWFCNQRQKQKR 403



>gi|28202257|sp|P14859|PO2F1_HUMAN   POU domain, class 2, transcription factor 1 (Octamer-binding
           transcription factor 1) (Oct-1) (OTF-1) (NF-A1)
          Length = 743

 Score = 35.0 bits (79), Expect = 0.021
 Identities = 24/70 (34%), Positives = 34/70 (48%), Gaps = 4/70 (5%)

Query: 150 NIGGPEG----KRARTAYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLSERQIKIWFQ 205
           N  G EG    ++ RT+      + LEK F  N+  T      IA  L + +  I++WF 
Sbjct: 369 NSPGIEGLSRRRKKRTSIETNIRVALEKSFLENQKPTSEEITMIADQLNMEKEVIRVWFC 428

Query: 206 NRRMKWKKDN 215
           NRR K K+ N
Sbjct: 429 NRRQKEKRIN 438



>gi|20138668|sp|Q969G2|LHX4_HUMAN   LIM/homeobox protein Lhx4
          Length = 367

 Score = 35.0 bits (79), Expect = 0.021
 Identities = 20/60 (33%), Positives = 30/60 (50%)

Query: 157 KRARTAYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLSERQIKIWFQNRRMKWKKDNK 216
           KR RT  T  Q   L+  +  +    R  R +++    L  R +++WFQNRR K K+  K
Sbjct: 135 KRPRTTITAKQLETLKNAYKNSPKPARHVREQLSSETGLDMRVVQVWFQNRRAKEKRLKK 194



>gi|2495306|sp|Q14863|PO6F1_HUMAN   POU domain, class 6, transcription factor 1 (mPOU homeobox protein)
           (Brain-specific homeobox/POU domain protein 5) (Brain-5)
           (Brn-5 protein)
          Length = 301

 Score = 34.7 bits (78), Expect = 0.027
 Identities = 23/67 (34%), Positives = 30/67 (44%), Gaps = 1/67 (1%)

Query: 152 GGPEGKRAR-TAYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLSERQIKIWFQNRRMK 210
           G P  KR R T++T      L   F  N   T +   EIA  L      +++WF NRR  
Sbjct: 229 GEPSKKRKRRTSFTPQAIEALNAYFEKNPLPTGQEITEIAKELNYDREVVRVWFCNRRQT 288

Query: 211 WKKDNKL 217
            K  +KL
Sbjct: 289 LKNTSKL 295



>gi|28201861|sp|Q9UKI9|PO2F3_HUMAN   POU domain, class 2, transcription factor 3 (Octamer-binding
           transcription factor 11) (Oct-11) (Transcription factor
           Skn-1) (PLA-1 protein)
          Length = 436

 Score = 34.7 bits (78), Expect = 0.027
 Identities = 19/59 (32%), Positives = 29/59 (49%)

Query: 157 KRARTAYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLSERQIKIWFQNRRMKWKKDN 215
           ++ RT+      L LEK F  N   +      IA  L + +  +++WF NRR K K+ N
Sbjct: 282 RKKRTSIETNIRLTLEKRFQDNPKPSSEEISMIAEQLSMEKEVVRVWFCNRRQKEKRIN 340



>gi|2495302|sp|Q15319|PO43_HUMAN   POU domain, class 4, transcription factor 3 (Brain-specific
           homeobox/POU domain protein 3C) (Brn-3C)
          Length = 338

 Score = 34.3 bits (77), Expect = 0.036
 Identities = 19/61 (31%), Positives = 29/61 (47%)

Query: 153 GPEGKRARTAYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLSERQIKIWFQNRRMKWK 212
           G E KR RT+    +   LE  F      +  +   IA  L L +  +++WF N+R K K
Sbjct: 271 GSERKRKRTSIAAPEKRSLEAYFAIQPRPSSEKIAAIAEKLDLKKNVVRVWFCNQRQKQK 330

Query: 213 K 213
           +
Sbjct: 331 R 331



>gi|20978495|sp|Q96A47|ISL2_HUMAN   Insulin gene enhancer protein ISL-2 (Islet-2)
          Length = 359

 Score = 33.5 bits (75), Expect = 0.061
 Identities = 28/91 (30%), Positives = 40/91 (43%), Gaps = 12/91 (13%)

Query: 139 PWMRKLHISHDNIGG-----PEGKRARTAYTRYQTLELEKEFHFNR--YLTRRR-----R 186
           P  R LH+     G      P   +     TR +T+  EK+ H  R  Y    R     +
Sbjct: 162 PGARGLHLPDAGSGRQPALRPHVHKQTEKTTRVRTVLNEKQLHTLRTCYAANPRPDALMK 221

Query: 187 IEIAHALCLSERQIKIWFQNRRMKWKKDNKL 217
            ++     LS R I++WFQN+R K KK + L
Sbjct: 222 EQLVEMTGLSPRVIRVWFQNKRCKDKKKSIL 252



>gi|2506535|sp|Q01851|PO4F1_HUMAN   POU domain, class 4, transcription factor 1 (Brain-specific
           homeobox/POU domain protein 3A) (Brn-3A) (Oct-T1)
           (Homeobox/POU domain protein RDC-1)
          Length = 423

 Score = 33.5 bits (75), Expect = 0.061
 Identities = 19/61 (31%), Positives = 29/61 (47%)

Query: 153 GPEGKRARTAYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLSERQIKIWFQNRRMKWK 212
           G E KR RT+    +   LE  F      +  +   IA  L L +  +++WF N+R K K
Sbjct: 356 GGEKKRKRTSIAAPEKRSLEAYFAVQPRPSSEKIAAIAEKLDLKKNVVRVWFCNQRQKQK 415

Query: 213 K 213
           +
Sbjct: 416 R 416



>gi|47117874|sp|P78415|IRX3_HUMAN   Iroquois-class homeodomain protein IRX-3 (Iroquois homeobox protein
           3) (Homeodomain protein IRXB1)
          Length = 501

 Score = 32.7 bits (73), Expect = 0.10
 Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 3/57 (5%)

Query: 164 TRYQTLELE---KEFHFNRYLTRRRRIEIAHALCLSERQIKIWFQNRRMKWKKDNKL 217
           TR  T  L+    E   N Y T+  +I +A    ++  Q+  WF N R + KK+NK+
Sbjct: 135 TRESTSTLKAWLNEHRKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENKM 191



>gi|47606423|sp|P61371|ISL1_HUMAN   Insulin gene enhancer protein ISL-1 (Islet-1)
 gi|47606425|sp|P61373|ISL1_MESAU   Insulin gene enhancer protein ISL-1 (Islet-1)
 gi|47606424|sp|P61372|ISL1_MOUSE   Insulin gene enhancer protein ISL-1 (Islet-1)
 gi|47606422|sp|P61374|ISL1_RAT   Insulin gene enhancer protein ISL-1 (Islet-1)
          Length = 349

 Score = 32.3 bits (72), Expect = 0.14
 Identities = 21/57 (36%), Positives = 30/57 (52%), Gaps = 7/57 (12%)

Query: 164 TRYQTLELEKEFHFNR--YLTRRR-----RIEIAHALCLSERQIKIWFQNRRMKWKK 213
           TR +T+  EK+ H  R  Y    R     + ++     LS R I++WFQN+R K KK
Sbjct: 182 TRVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKK 238



>gi|47117873|sp|P78414|IRX1_HUMAN   Iroquois-class homeodomain protein IRX-1 (Iroquois homeobox protein
           1) (Homeodomain protein IRXA1)
          Length = 480

 Score = 32.3 bits (72), Expect = 0.14
 Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 3/57 (5%)

Query: 164 TRYQTLELE---KEFHFNRYLTRRRRIEIAHALCLSERQIKIWFQNRRMKWKKDNKL 217
           TR  T  L+    E   N Y T+  +I +A    ++  Q+  WF N R + KK+NK+
Sbjct: 135 TRESTSTLKAWLNEHRKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENKV 191



>gi|47117871|sp|P78411|IRX5_HUMAN   Iroquois-class homeodomain protein IRX-5 (Iroquois homeobox protein
           5) (Homeodomain protein IRXB2) (IRX-2A)
          Length = 482

 Score = 32.3 bits (72), Expect = 0.14
 Identities = 15/44 (34%), Positives = 24/44 (54%)

Query: 174 EFHFNRYLTRRRRIEIAHALCLSERQIKIWFQNRRMKWKKDNKL 217
           E   N Y T+  +I +A    ++  Q+  WF N R + KK+NK+
Sbjct: 134 EHRKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENKM 177



>gi|47117908|sp|Q9BZI1|IRX2_HUMAN   Iroquois-class homeodomain protein IRX-2 (Iroquois homeobox protein
           2) (Homeodomain protein IRXA2)
          Length = 471

 Score = 32.3 bits (72), Expect = 0.14
 Identities = 15/44 (34%), Positives = 24/44 (54%)

Query: 174 EFHFNRYLTRRRRIEIAHALCLSERQIKIWFQNRRMKWKKDNKL 217
           E   N Y T+  +I +A    ++  Q+  WF N R + KK+NK+
Sbjct: 135 EHRKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENKM 178



>gi|730281|sp|P40426|PBX3_HUMAN   Pre-B-cell leukemia transcription factor-3 (Homeobox protein PBX3)
          Length = 434

 Score = 32.0 bits (71), Expect = 0.18
 Identities = 16/63 (25%), Positives = 34/63 (53%), Gaps = 3/63 (4%)

Query: 155 EGKRARTAYTRYQTLELEKEFHF---NRYLTRRRRIEIAHALCLSERQIKIWFQNRRMKW 211
           + +R R  +++  T  L + F+    N Y +   + E+A    ++  Q+  WF N+R+++
Sbjct: 234 DARRKRRNFSKQATEILNEYFYSHLSNPYPSEEAKEELAKKCSITVSQVSNWFGNKRIRY 293

Query: 212 KKD 214
           KK+
Sbjct: 294 KKN 296



>gi|1352729|sp|P40425|PBX2_HUMAN   Pre-B-cell leukemia transcription factor-2 (Homeobox protein PBX2)
           (G17 protein)
          Length = 430

 Score = 31.6 bits (70), Expect = 0.23
 Identities = 16/63 (25%), Positives = 34/63 (53%), Gaps = 3/63 (4%)

Query: 155 EGKRARTAYTRYQTLELEKEFHF---NRYLTRRRRIEIAHALCLSERQIKIWFQNRRMKW 211
           + +R R  +++  T  L + F+    N Y +   + E+A    ++  Q+  WF N+R+++
Sbjct: 243 DARRKRRNFSKQATEVLNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRY 302

Query: 212 KKD 214
           KK+
Sbjct: 303 KKN 305



>gi|12230598|sp|Q9NPC8|SIX2_HUMAN   Homeobox protein SIX2 (Sine oculis homeobox homolog 2)
          Length = 291

 Score = 31.2 bits (69), Expect = 0.30
 Identities = 15/56 (26%), Positives = 27/56 (48%)

Query: 155 EGKRARTAYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLSERQIKIWFQNRRMK 210
           +G+     +       L + +  N Y + R + E+A A  L+  Q+  WF+NRR +
Sbjct: 123 DGEETSYCFKEKSRSVLREWYAHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQR 178



>gi|37999770|sp|Q9BYU1|PBX4_HUMAN   Pre-B-cell leukemia transcription factor-4 (Homeobox protein PBX4)
          Length = 330

 Score = 31.2 bits (69), Expect = 0.30
 Identities = 17/63 (26%), Positives = 34/63 (53%), Gaps = 3/63 (4%)

Query: 155 EGKRARTAYTRYQTLELEKEFHF---NRYLTRRRRIEIAHALCLSERQIKIWFQNRRMKW 211
           + +R R  +++  T  L + F+    N Y +   + E+A    L+  Q+  WF N+R+++
Sbjct: 165 DARRKRRNFSKQATEVLNEYFYSHLNNPYPSEEAKEELARKGGLTISQVSNWFGNKRIRY 224

Query: 212 KKD 214
           KK+
Sbjct: 225 KKN 227



>gi|28201884|sp|P78424|PO6F2_HUMAN   POU domain, class 6, transcription factor 2 (Retina-derived
           POU-domain factor-1) (RPF-1)
          Length = 684

 Score = 31.2 bits (69), Expect = 0.30
 Identities = 23/74 (31%), Positives = 31/74 (41%), Gaps = 2/74 (2%)

Query: 154 PEGKRARTAYTRYQTLE-LEKEFHFNRYLTRRRRIEIAHALCLSERQIKIWFQNRRMKWK 212
           P  KR R      Q LE L   F  N + + +   EIA  L      +++WF N+R   K
Sbjct: 597 PSKKRKRRTSFTPQALEILNAHFEKNTHPSGQEMTEIAEKLNYDREVVRVWFCNKRQALK 656

Query: 213 KD-NKLKSMSMAAA 225
               +LK    A A
Sbjct: 657 NTIKRLKQHEPATA 670



>gi|2495290|sp|Q15475|SIX1_HUMAN   Homeobox protein SIX1 (Sine oculis homeobox homolog 1)
          Length = 284

 Score = 30.8 bits (68), Expect = 0.40
 Identities = 14/40 (35%), Positives = 23/40 (57%)

Query: 171 LEKEFHFNRYLTRRRRIEIAHALCLSERQIKIWFQNRRMK 210
           L + +  N Y + R + E+A A  L+  Q+  WF+NRR +
Sbjct: 139 LREWYAHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQR 178



>gi|20141754|sp|P41778|PBX1_MOUSE   Pre-B-cell leukemia transcription factor-1 (Homeobox protein PBX1)
 gi|730279|sp|P40424|PBX1_HUMAN   Pre-B-cell leukemia transcription factor-1 (Homeobox protein PBX1)
           (Homeobox protein PRL)
          Length = 430

 Score = 30.8 bits (68), Expect = 0.40
 Identities = 16/63 (25%), Positives = 33/63 (52%), Gaps = 3/63 (4%)

Query: 155 EGKRARTAYTRYQTLELEKEFHF---NRYLTRRRRIEIAHALCLSERQIKIWFQNRRMKW 211
           + +R R  + +  T  L + F+    N Y +   + E+A    ++  Q+  WF N+R+++
Sbjct: 232 DARRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRY 291

Query: 212 KKD 214
           KK+
Sbjct: 292 KKN 294



>gi|123408|sp|P28069|PIT1_HUMAN   Pituitary-specific positive transcription factor 1 (Pit-1) (Growth
           hormone factor 1) (GHF-1)
          Length = 291

 Score = 30.0 bits (66), Expect = 0.68
 Identities = 17/67 (25%), Positives = 32/67 (47%), Gaps = 1/67 (1%)

Query: 148 HDNIGGPEGKRARTAYTRYQTLE-LEKEFHFNRYLTRRRRIEIAHALCLSERQIKIWFQN 206
           ++ +G  E KR R         + LE+ F      + +  + +A  L L +  +++WF N
Sbjct: 205 NEKVGANERKRKRRTTISIAAKDALERHFGEQNKPSSQEIMRMAEELNLEKEVVRVWFCN 264

Query: 207 RRMKWKK 213
           RR + K+
Sbjct: 265 RRQREKR 271



>gi|400659|sp|Q01860|PO5F1_HUMAN   POU domain, class 5, transcription factor 1 (Octamer-binding
           transcription factor 3) (Oct-3) (Oct-4)
          Length = 360

 Score = 29.6 bits (65), Expect = 0.88
 Identities = 23/75 (30%), Positives = 33/75 (44%), Gaps = 2/75 (2%)

Query: 157 KRARTAYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLSERQIKIWFQNRRMKWKKDNK 216
           KR RT+        LE  F      T ++   IA  L L +  +++WF NRR K K+ + 
Sbjct: 231 KRKRTSIENRVRGNLENLFLQCPKPTLQQISHIAQQLGLEKDVVRVWFCNRRQKGKRSSS 290

Query: 217 --LKSMSMAAAGGAF 229
              +     AAG  F
Sbjct: 291 DYAQREDFEAAGSPF 305



>gi|12230612|sp|Q9UIU6|SIX4_HUMAN   Homeobox protein SIX4 (Sine oculis homeobox homolog 4)
          Length = 760

 Score = 29.6 bits (65), Expect = 0.88
 Identities = 15/51 (29%), Positives = 28/51 (54%)

Query: 171 LEKEFHFNRYLTRRRRIEIAHALCLSERQIKIWFQNRRMKWKKDNKLKSMS 221
           L++ +  NRY +   +  +A    LS  Q+  WF+NRR + +  ++ +S S
Sbjct: 217 LKELYKQNRYPSPAEKRHLAKITGLSLTQVSNWFKNRRQRDRNPSETQSKS 267



>gi|6094293|sp|O95343|SIX3_HUMAN   Homeobox protein SIX3 (Sine oculis homeobox homolog 3)
          Length = 332

 Score = 27.7 bits (60), Expect = 3.4
 Identities = 18/71 (25%), Positives = 38/71 (53%), Gaps = 4/71 (5%)

Query: 160 RTAYTRYQTLELEKEFHF-NRYLTRRRRIEIAHALCLSERQIKIWFQNRRMKWK---KDN 215
           +T   + +T  L +E++  + Y    ++ E+A A  L+  Q+  WF+NRR + +     N
Sbjct: 209 KTHCFKERTRSLLREWYLQDPYPNPSKKRELAQATGLTPTQVGNWFKNRRQRDRAAAAKN 268

Query: 216 KLKSMSMAAAG 226
           +L+  ++  +G
Sbjct: 269 RLQHQAIGPSG 279



>gi|28201858|sp|Q06416|PO5L_HUMAN   POU domain, class 5, transcription factor 1-like protein 1 (Octamer
           binding protein 3-like)
          Length = 359

 Score = 27.7 bits (60), Expect = 3.4
 Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 2/43 (4%)

Query: 189 IAHALCLSERQIKIWFQNRRMKWKKDNK--LKSMSMAAAGGAF 229
           IA  L L +  +++WF NRR K K+ +    +     AAG  F
Sbjct: 262 IAQQLGLEKDVVRVWFCNRRQKGKRSSSDYAQREDFEAAGSPF 304



>gi|20532376|sp|Q9Y4X5|ARI1_HUMAN   Ariadne-1 protein homolog (ARI-1) (Ubiquitin-conjugating enzyme
           E2-binding protein 1) (UbcH7-binding protein)
           (UbcM4-interacting protein) (HHARI) (H7-AP2) (HUSSY-27)
           (MOP-6)
          Length = 557

 Score = 27.7 bits (60), Expect = 3.4
 Identities = 17/64 (26%), Positives = 25/64 (39%)

Query: 155 EGKRARTAYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLSERQIKIWFQNRRMKWKKD 214
           + K AR A  R +       F+ NRY+   + +   H L    +Q     Q   M W + 
Sbjct: 396 DAKAARDAQERSRAALQRYLFYCNRYMNHMQSLRFEHKLYAQVKQKMEEMQQHNMSWIEV 455

Query: 215 NKLK 218
             LK
Sbjct: 456 QFLK 459



>gi|1709437|sp|Q03052|PO3F1_HUMAN   POU domain, class 3, transcription factor 1 (Octamer-binding
           transcription factor 6) (Oct-6) (POU-domain
           transcription factor SCIP)
          Length = 448

 Score = 27.7 bits (60), Expect = 3.4
 Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 8/43 (18%)

Query: 189 IAHALCLSERQIKIWFQNRRMKWKKDNKLKSMSMAAAGGAFRP 231
           +A +L L +  +++WF NRR K K+        M  A GA  P
Sbjct: 369 LADSLQLEKEVVRVWFCNRRQKEKR--------MTPAAGAGHP 403



>gi|28201859|sp|Q9BZV7|PO5M_HUMAN   POU domain, class 5, transcription factor 1-like protein 2
          Length = 359

 Score = 27.7 bits (60), Expect = 3.4
 Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 2/43 (4%)

Query: 189 IAHALCLSERQIKIWFQNRRMKWKKDNK--LKSMSMAAAGGAF 229
           IA  L L +  +++WF NRR K K+ +    +     AAG  F
Sbjct: 262 IAQQLGLEKDVVRVWFCNRRQKGKRSSSDYAQREDFEAAGSPF 304



>gi|46396941|sp|Q8N196|SIX5_HUMAN   Homeobox protein SIX5 (DM locus-associated homeodomain protein)
          Length = 739

 Score = 27.7 bits (60), Expect = 3.4
 Identities = 15/56 (26%), Positives = 25/56 (44%)

Query: 155 EGKRARTAYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLSERQIKIWFQNRRMK 210
           +G+     +       L+  +  NRY T   +  +A    LS  Q+  WF+NRR +
Sbjct: 200 DGEETVYCFKERSRAALKACYRGNRYPTPDEKRRLATLTGLSLTQVSNWFKNRRQR 255



>gi|20141591|sp|Q15811|ITN1_HUMAN   Intersectin 1 (SH3 domain-containing protein 1A) (SH3P17)
          Length = 1721

 Score = 27.7 bits (60), Expect = 3.4
 Identities = 16/60 (26%), Positives = 30/60 (50%)

Query: 157 KRARTAYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLSERQIKIWFQNRRMKWKKDNK 216
           +R R    R + LELEK+    R L R+R  E    +   E   +   + R+++W+++ +
Sbjct: 395 ERERQEQERKRQLELEKQLEKQRELERQREEERRKEIERREAAKRELERQRQLEWERNRR 454



>gi|1705454|sp|P55315|FOXGB_HUMAN   Forkhead box protein G1B (Forkhead-related protein FKHL1)
           (Transcription factor BF-1) (Brain factor 1) (BF1)
           (HFK1)
          Length = 477

 Score = 27.3 bits (59), Expect = 4.4
 Identities = 10/20 (50%), Positives = 14/20 (70%)

Query: 51  ATSTHSPQPDPLPCSAVAPS 70
           ++ST  P P PLPC ++ PS
Sbjct: 428 SSSTSPPAPRPLPCESLRPS 447



>gi|12230578|sp|O95475|SIX6_HUMAN   Homeobox protein SIX6 (Sine oculis homeobox homolog 6) (Optic
           homeobox 2) (Homeodomain protein OPTX2)
          Length = 246

 Score = 27.3 bits (59), Expect = 4.4
 Identities = 18/72 (25%), Positives = 37/72 (51%), Gaps = 4/72 (5%)

Query: 160 RTAYTRYQTLELEKEFHF-NRYLTRRRRIEIAHALCLSERQIKIWFQNRRMKWK---KDN 215
           +T   + +T  L +E++  + Y    ++ E+A A  L+  Q+  WF+NRR + +     N
Sbjct: 131 KTHCFKERTRNLLREWYLQDPYPNPSKKRELAQATGLTPTQVGNWFKNRRQRDRAAAAKN 190

Query: 216 KLKSMSMAAAGG 227
           +L+   ++   G
Sbjct: 191 RLQQQVLSQGSG 202



>gi|1706312|sp|Q10586|DBP_HUMAN   D-site-binding protein (Albumin D box-binding protein) (TAXREB302)
          Length = 325

 Score = 26.9 bits (58), Expect = 5.7
 Identities = 16/53 (30%), Positives = 19/53 (35%), Gaps = 10/53 (18%)

Query: 57  PQPDPLPCSAVAPSPGSDXXXXXXXXXXXXXXXXXXXXXTHISSREGVGTASG 109
           P P+P P    APSPG                        H  +R  +GTASG
Sbjct: 138 PSPEPSPARTPAPSPGPGSCGSASPRSSPG----------HAPARAALGTASG 180



>gi|60392394|sp|Q9BPY8|HOP_HUMAN   Homeodomain-only protein (Lung cancer-associated Y protein) (Odd
           homeobox protein 1) (Not expressed in choriocarcinoma
           protein 1)
          Length = 73

 Score = 26.9 bits (58), Expect = 5.7
 Identities = 12/31 (38%), Positives = 17/31 (54%)

Query: 189 IAHALCLSERQIKIWFQNRRMKWKKDNKLKS 219
           IA    LSE + + WF+ R  KW++   L S
Sbjct: 36  IAAEAGLSEEETQKWFKQRLAKWRRSEGLPS 66



>gi|22001986|sp|Q9BYB0|SHK3_HUMAN   SH3 and multiple ankyrin repeat domains protein 3 (Shank3)
           (Proline-rich synapse-associated protein 2) (ProSAP2)
          Length = 797

 Score = 26.9 bits (58), Expect = 5.7
 Identities = 10/20 (50%), Positives = 12/20 (60%)

Query: 54  THSPQPDPLPCSAVAPSPGS 73
           + SP P PLP  A  P PG+
Sbjct: 700 SRSPSPSPLPSPASGPGPGA 719



>gi|44889075|sp|Q9H4I2|ZHX3_HUMAN   Zinc fingers and homeoboxes protein 3 (Triple homeobox 1 protein)
          Length = 956

 Score = 26.6 bits (57), Expect = 7.5
 Identities = 13/40 (32%), Positives = 19/40 (47%)

Query: 171 LEKEFHFNRYLTRRRRIEIAHALCLSERQIKIWFQNRRMK 210
           L+  FH   Y T+     +       E Q+KIWF  +R+K
Sbjct: 319 LKNSFHKFPYPTKAELCYLTVVTKYPEEQLKIWFTAQRLK 358



>gi|28202258|sp|P20265|PO3F2_HUMAN   POU domain, class 3, transcription factor 2 (Nervous-system
           specific octamer-binding transcription factor N-Oct-3)
           (Brain-specific homeobox/POU domain protein 2) (Brain-2)
           (Brn-2 protein)
          Length = 443

 Score = 26.6 bits (57), Expect = 7.5
 Identities = 10/25 (40%), Positives = 17/25 (68%)

Query: 189 IAHALCLSERQIKIWFQNRRMKWKK 213
           +A +L L +  +++WF NRR K K+
Sbjct: 387 LADSLQLEKEVVRVWFCNRRQKEKR 411



>gi|1345629|sp|P49335|PO3F4_HUMAN   POU domain, class 3, transcription factor 4 (Brain-specific
           homeobox/POU domain protein 4) (Brain-4) (Brn-4)
          Length = 361

 Score = 26.6 bits (57), Expect = 7.5
 Identities = 10/25 (40%), Positives = 17/25 (68%)

Query: 189 IAHALCLSERQIKIWFQNRRMKWKK 213
           +A +L L +  +++WF NRR K K+
Sbjct: 311 LADSLQLEKEVVRVWFCNRRQKEKR 335



>gi|17369320|sp|Q9NRC6|SPCR_HUMAN   Spectrin beta chain, brain 4 (Spectrin, non-erythroid beta chain 4)
            (Beta-V spectrin) (BSPECV)
          Length = 3674

 Score = 26.6 bits (57), Expect = 7.5
 Identities = 20/76 (26%), Positives = 35/76 (46%), Gaps = 6/76 (7%)

Query: 152  GGPEGKRARTAYTRYQTLELEKEFHFNRYLTRRRRIE---IAHALCLSERQIKIWFQNRR 208
            G PE   A++A  R Q + L KE  F +  TRR R+E      A     +++  W + + 
Sbjct: 2646 GHPE---AQSALGRCQAMLLRKEALFRQAGTRRHRLEELRQLQAFLQDSQEVAAWLREKN 2702

Query: 209  MKWKKDNKLKSMSMAA 224
            +   ++  L +  + A
Sbjct: 2703 LVALEEGLLDTAMLPA 2718



>gi|2506534|sp|P20264|PO33_HUMAN   POU domain, class 3, transcription factor 3 (Brain-specific
           homeobox/POU domain protein 1) (Brain-1) (Brn-1 protein)
          Length = 500

 Score = 26.6 bits (57), Expect = 7.5
 Identities = 10/25 (40%), Positives = 17/25 (68%)

Query: 189 IAHALCLSERQIKIWFQNRRMKWKK 213
           +A +L L +  +++WF NRR K K+
Sbjct: 439 LADSLQLEKEVVRVWFCNRRQKEKR 463



>gi|24636245|sp|Q9H2P0|ADNP_HUMAN   Activity-dependent neuroprotector (Activity-dependent
           neuroprotective protein)
          Length = 1102

 Score = 26.2 bits (56), Expect = 9.7
 Identities = 16/44 (36%), Positives = 23/44 (52%)

Query: 171 LEKEFHFNRYLTRRRRIEIAHALCLSERQIKIWFQNRRMKWKKD 214
           L K F+   Y TRR   ++A +L L +  I   F N+R K  +D
Sbjct: 771 LTKYFNKQPYPTRREIEKLAASLWLWKSDIASHFSNKRKKCVRD 814






  Database: Non-redundant SwissProt sequences
    Posted date:  Mar 15, 2005 10:11 AM
  Number of letters in database: 60,490,055
  Number of sequences in database:  164,271
  
Lambda     K      H
   0.318    0.133    0.420 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 440,284
Number of Sequences: 164271
Number of extensions: 15081
Number of successful extensions: 95
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 63
Number of HSP's gapped (non-prelim): 32
length of query: 231
length of database: 6,424,444
effective HSP length: 92
effective length of query: 139
effective length of database: 5,329,184
effective search space: 740756576
effective search space used: 740756576
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)