RID=1111165561-5246-111752803496.BLASTQ2, FGENESH (7), GENEid (8): 2 exon (s) 190014

BLASTP 2.2.10 [Oct-19-2004]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
RID: 1111165561-5246-111752803496.BLASTQ2
Query= FGENESH (7), GENEid (8): 2 exon (s) 190014 - 192739 335 aa, chain - (335 letters)
Database: Non-redundant SwissProt sequences 164,271 sequences; 60,490,055 total letters
If you have any problems or questions with the results of this search
please refer to the BLAST FAQs
Taxonomy reports
Distribution of 181 Blast Hits on the Query Sequence


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|6016293|sp|O43365|HXA3_HUMAN  Homeobox protein Hox-A3 (Ho...   402   e-113 
gi|123268|sp|P14651|HXB3_HUMAN  Homeobox protein Hox-B3 (Hox...   240   4e-64 
gi|6166222|sp|P31249|HXD3_HUMAN  Homeobox protein Hox-D3 (Ho...   227   5e-60 
gi|123270|sp|P14652|HXB2_HUMAN  Homeobox protein Hox-B2 (Hox...   110   5e-25 
gi|6016292|sp|O43364|HXA2_HUMAN  Homeobox protein Hox-A2          107   6e-24 
gi|1708540|sp|P52945|IPF1_HUMAN  Insulin promoter factor-1 (...   107   6e-24 
gi|400000|sp|P09067|HXB5_HUMAN  Homeobox protein Hox-B5 (Hox...   103   6e-23 
gi|20141491|sp|P09016|HXD4_HUMAN  Homeobox protein Hox-D4 (H...   102   2e-22 
gi|52788238|sp|P20719|HXA5_HUMAN  Homeobox protein Hox-A5 (H...   101   3e-22 
gi|6166217|sp|Q00056|HXA4_HUMAN  Homeobox protein Hox-A4 (Ho...   100   5e-22 
gi|547692|sp|P17483|HXB4_HUMAN  Homeobox protein Hox-B4 (Hox...   100   7e-22 
gi|17378648|sp|Q9GZZ0|HXD1_HUMAN  Homeobox protein Hox-D1          99   2e-21 
gi|3915721|sp|P31268|HXA7_HUMAN  Homeobox protein Hox-A7 (Ho...    99   2e-21 
gi|232262|sp|Q00444|HXC5_HUMAN  Homeobox protein Hox-C5 (Hox...    96   1e-20 
gi|27923786|sp|Q9H4S2|GSHI_HUMAN  Homeobox protein GSH-1           95   3e-20 
gi|123279|sp|P09017|HXC4_HUMAN  Homeobox protein Hox-C4 (Hox...    95   3e-20 
gi|20138327|sp|Q9BZM3|GSH2_HUMAN  Homeobox protein GSH-2           94   5e-20 
gi|123255|sp|P09629|HXB7_HUMAN  Homeobox protein Hox-B7 (Hox...    94   5e-20 
gi|17378385|sp|P31267|HXA6_HUMAN  Homeobox protein Hox-A6 (H...    94   8e-20 
gi|20141493|sp|P09630|HXC6_HUMAN  Homeobox protein Hox-C6 (H...    94   8e-20 
gi|123271|sp|P14653|HXB1_HUMAN  Homeobox protein Hox-B1 (Hox...    92   2e-19 
gi|45644931|sp|P50219|HLXB9_HUMAN  Homeobox protein HB9            91   7e-19 
gi|13124738|sp|P17509|HXB6_HUMAN  Homeobox protein Hox-B6 (H...    90   9e-19 
gi|123286|sp|P28356|HXD9_HUMAN  Homeobox protein Hox-D9 (Hox...    88   4e-18 
gi|6166216|sp|P49639|HXA1_HUMAN  Homeobox protein Hox-A1 (Ho...    88   5e-18 
gi|20141507|sp|P17482|HXB9_HUMAN  Homeobox protein Hox-B9 (H...    86   2e-17 
gi|20141537|sp|P31274|HXC9_HUMAN  Homeobox protein Hox-C9 (H...    85   4e-17 
gi|6166219|sp|P31269|HXA9_HUMAN  Homeobox protein Hox-A9 (Ho...    85   4e-17 
gi|1709079|sp|P50222|MEOX2_HUMAN  Homeobox protein MOX-2 (Me...    84   5e-17 
gi|20141506|sp|P17481|HXB8_HUMAN  Homeobox protein Hox-B8 (H...    84   7e-17 
gi|2506529|sp|Q07687|DLX2_HUMAN  Homeobox protein DLX-2            82   3e-16 
gi|20141612|sp|Q9NYD6|HXC10_HUMAN  Homeobox protein Hox-C10        82   3e-16 
gi|13124744|sp|P31270|HXA11_HUMAN  Homeobox protein Hox-A11 ...    81   4e-16 
gi|12230077|sp|Q14549|GBX1_HUMAN  Homeobox protein GBX-1 (Ga...    81   6e-16 
gi|1709078|sp|P50221|MEOX1_HUMAN  Homeobox protein MOX-1 (Me...    80   7e-16 
gi|12644203|sp|P31277|HXD11_HUMAN  Homeobox protein Hox-D11 ...    80   1e-15 
gi|13124745|sp|P31273|HXC8_HUMAN  Homeobox protein Hox-C8 (H...    80   1e-15 
gi|13124737|sp|P13378|HXD8_HUMAN  Homeobox protein Hox-D8 (H...    80   1e-15 
gi|12644308|sp|P52951|GBX2_HUMAN  Homeobox protein GBX-2 (Ga...    79   2e-15 
gi|1345720|sp|P47902|CDX1_HUMAN  Homeobox protein CDX-1 (Cau...    79   3e-15 
gi|3287858|sp|O43248|HXC11_HUMAN  Homeobox protein Hox-C11         78   4e-15 
gi|123289|sp|P28358|HXD10_HUMAN  Homeobox protein Hox-D10 (H...    78   5e-15 
gi|20141282|sp|Q99626|CDX2_HUMAN  Homeobox protein CDX-2 (Ca...    78   5e-15 
gi|13124743|sp|P31260|HXA10_HUMAN  Homeobox protein Hox-A10 ...    77   6e-15 
gi|6016210|sp|P78367|NK32_HUMAN  Homeobox protein Nkx-3.2 (B...    75   3e-14 
gi|13431329|sp|Q9UMQ3|BARX2_HUMAN  Homeobox protein BarH-like 2    75   4e-14 
gi|38605720|sp|P56177|DLX1_HUMAN  Homeobox protein DLX-1           74   7e-14 
gi|12231013|sp|Q03828|EVX2_HUMAN  Homeobox even-skipped homo...    74   9e-14 
gi|1352398|sp|P49640|EVX1_HUMAN  Homeobox even-skipped homol...    73   1e-13 
gi|3024482|sp|P78337|PITX1_HUMAN  Pituitary homeobox 1 (Hind...    73   1e-13 
gi|3023467|sp|O14627|CDX4_HUMAN  Homeobox protein CDX-4 (Cau...    72   2e-13 
gi|6016205|sp|O95096|NKX22_HUMAN  Homeobox protein Nkx-2.2 (...    72   3e-13 
gi|27923815|sp|Q8TAU0|NKX23_HUMAN  Homeobox protein Nkx-2.3 ...    72   3e-13 
gi|17377578|sp|Q99801|NKX31_HUMAN  Homeobox protein Nkx-3.1        71   5e-13 
gi|12644329|sp|P56178|DLX5_HUMAN  Homeobox protein DLX-5           71   5e-13 
gi|3913487|sp|O60479|DLX3_HUMAN  Homeobox protein DLX-3            71   6e-13 
gi|20141538|sp|P31275|HXC12_HUMAN  Homeobox protein Hox-C12 ...    71   6e-13 
gi|1708211|sp|P52952|NK25_HUMAN  Homeobox protein Nkx-2.5 (H...    70   1e-12 
gi|12644227|sp|P35452|HXD12_HUMAN  Homeobox protein Hox-D12 ...    70   1e-12 
gi|14194481|sp|Q9HBU1|BARX1_HUMAN  Homeobox protein BarH-like 1    69   2e-12 
gi|20532295|sp|Q9UIW0|VAX2_HUMAN  Ventral anterior homeobox 2      68   4e-12 
gi|21903415|sp|P19622|HME2_HUMAN  Homeobox protein engrailed...    68   5e-12 
gi|29336920|sp|Q9BZE3|BARH1_HUMAN  BarH-like 1 homeobox prot...    67   7e-12 
gi|27923817|sp|Q9H2Z4|NK24_HUMAN  Homeobox protein Nkx-2.4 (...    67   7e-12 
gi|14917010|sp|Q05925|HME1_HUMAN  Homeobox protein engrailed...    67   8e-12 
gi|6016208|sp|O15522|NK28_HUMAN  Homeobox protein Nkx-2.8 (H...    67   8e-12 
gi|3915680|sp|Q92988|DLX4_HUMAN  Homeobox protein DLX-4 (DLX...    66   1e-11 
gi|1174819|sp|P43699|TITF1_HUMAN  Thyroid transcription fact...    66   2e-11 
gi|6093723|sp|O75364|PITX3_HUMAN  Pituitary homeobox 3 (Home...    65   2e-11 
gi|47117915|sp|Q9NY43|BARH2_HUMAN  BarH-like 2 homeobox protein    65   2e-11 
gi|6174907|sp|Q99697|PITX2_HUMAN  Pituitary homeobox 2 (RIEG...    65   3e-11 
gi|57015304|sp|Q04741|EMX1_HUMAN  Homeobox protein EMX1 (Emp...    65   3e-11 
gi|50403792|sp|Q92826|HXB13_HUMAN  Homeobox protein Hox-B13        65   4e-11 
gi|13959687|sp|P35548|MSX2_HUMAN  Homeobox protein MSX-2 (Ho...    65   4e-11 
gi|399982|sp|P31314|TLX1_HUMAN  T-cell leukemia homeobox pro...    64   6e-11 
gi|19862512|sp|Q04743|EMX2_HUMAN  Homeobox protein EMX2 (Emp...    64   7e-11 
gi|23503066|sp|P28360|MSX1_HUMAN  Homeobox protein MSX-1 (Ho...    64   7e-11 
gi|12644330|sp|P56179|DLX6_HUMAN  Homeobox protein DLX-6           63   2e-10 
gi|2828197|sp|P31271|HXA13_HUMAN  Homeobox protein Hox-A13 (...    63   2e-10 
gi|23831508|sp|O43711|TLX3_HUMAN  T-cell leukemia homeobox p...    63   2e-10 
gi|6016211|sp|P78426|NK61_HUMAN  Homeobox protein Nkx-6.1          62   2e-10 
gi|8134640|sp|O14813|PHX2A_HUMAN  Paired mesoderm homeobox p...    62   4e-10 
gi|27923733|sp|Q96QS3|ARX_HUMAN  Homeobox protein ARX (Arist...    60   8e-10 
gi|547658|sp|Q03014|HHEX_HUMAN  Homeobox protein PRH (Hemato...    60   1e-09 
gi|2833256|sp|Q14774|HLX1_HUMAN  Homeobox protein HLX1 (Home...    60   1e-09 
gi|20141539|sp|P31276|HXC13_HUMAN  Homeobox protein Hox-C13 ...    60   1e-09 
gi|20532396|sp|O43763|TLX2_HUMAN  T-cell leukemia homeobox p...    60   1e-09 
gi|48428084|sp|Q8N693|ESX1L_HUMAN  Extraembryonic, spermatog...    59   2e-09 
gi|17380297|sp|Q9Y2V3|RX_HUMAN  Retinal homeobox protein Rx ...    59   2e-09 
gi|2851475|sp|P35453|HXD13_HUMAN  Homeobox protein Hox-D13 (...    59   2e-09 
gi|8247951|sp|P23759|PAX7_HUMAN  Paired box protein Pax-7 (H...    59   3e-09 
gi|3023579|sp|Q15699|CRT1_HUMAN  Cartilage homeoprotein 1 (C...    59   3e-09 
gi|8134644|sp|Q99453|PHX2B_HUMAN  Paired mesoderm homeobox p...    58   4e-09 
gi|12644475|sp|Q99811|PRRX2_HUMAN  Paired mesoderm homeobox ...    58   5e-09 
gi|1730095|sp|P52954|LBX1_HUMAN  Transcription factor LBX1         57   7e-09 
gi|13626112|sp|Q9H161|ALX4_HUMAN  Homeobox protein aristales...    57   1e-08 
gi|1172022|sp|P23760|PAX3_HUMAN  Paired box protein Pax-3 (H...    55   3e-08 
gi|6174916|sp|P54821|PRRX1_HUMAN  Paired mesoderm homeobox p...    55   3e-08 
gi|18202099|sp|O60902|SHOX2_HUMAN  Short stature homeobox pr...    53   1e-07 
gi|3287764|sp|O43186|CRX_HUMAN  Cone-rod homeobox protein          52   2e-07 
gi|12230168|sp|Q9UBX0|HESX1_HUMAN  Homeobox expressed in ES ...    52   3e-07 
gi|25009572|sp|Q9NZR4|VSX1_HUMAN  Visual system homeobox 1 (...    52   3e-07 
gi|13626107|sp|O95076|ALX3_HUMAN  Homeobox protein aristales...    52   3e-07 
gi|28380240|sp|Q9C0A1|ZFHX2_HUMAN  Zinc finger homeobox prot...    52   3e-07 
gi|6685480|sp|O15499|GSCL_HUMAN  Homeobox protein goosecoid-...    52   4e-07 
gi|51702790|sp|P63015|PAX6_MOUSE  Paired box protein Pax-6 (...    51   5e-07 
gi|6831676|sp|O15266|SHOX_HUMAN  Short stature homeobox prot...    51   6e-07 
gi|417425|sp|P32242|OTX1_HUMAN  Homeobox protein OTX1              51   6e-07 
gi|3914276|sp|O43316|PAX4_HUMAN  Paired box protein Pax-4          50   8e-07 
gi|417427|sp|P32243|OTX2_HUMAN  Homeobox protein OTX2              50   1e-06 
gi|17374365|sp|P58304|CHX10_HUMAN  Homeobox protein CHX10 (C...    50   1e-06 
gi|37537960|sp|Q8NHV9|PEPP1_HUMAN  Paired-like homeobox prot...    49   2e-06 
gi|18202510|sp|Q15911|ATBF1_HUMAN  Alpha-fetoprotein enhance...    49   2e-06 
gi|6093787|sp|O75360|PROP1_HUMAN  Homeobox protein prophet o...    49   2e-06 
gi|37537987|sp|Q9BQY4|PEP2_HUMAN  Paired-like homeobox prote...    48   5e-06 
gi|12643415|sp|Q9UBR4|LHX3_HUMAN  LIM/homeobox protein Lhx3        48   5e-06 
gi|7531125|sp|P56915|GSC_HUMAN  Homeobox protein goosecoid         47   1e-05 
gi|47117871|sp|P78411|IRX5_HUMAN  Iroquois-class homeodomain...    45   5e-05 
gi|8134548|sp|Q9UPM6|LHX61_HUMAN  LIM/homeobox protein Lhx6....    45   5e-05 
gi|12643346|sp|Q9NQ69|LHX9_HUMAN  LIM/homeobox protein Lhx9        44   6e-05 
gi|20138668|sp|Q969G2|LHX4_HUMAN  LIM/homeobox protein Lhx4        44   8e-05 
gi|8247936|sp|P50458|LHX2_HUMAN  LIM/homeobox protein Lhx2 (...    44   1e-04 
gi|47117874|sp|P78415|IRX3_HUMAN  Iroquois-class homeodomain...    43   1e-04 
gi|27923801|sp|Q8TE12|LMX1A_HUMAN  LIM homeobox transcriptio...    43   1e-04 
gi|1352729|sp|P40425|PBX2_HUMAN  Pre-B-cell leukemia transcr...    42   3e-04 
gi|123402|sp|P09086|PO2F2_HUMAN  POU domain, class 2, transc...    40   9e-04 
gi|20978495|sp|Q96A47|ISL2_HUMAN  Insulin gene enhancer prot...    40   9e-04 
gi|8247930|sp|O60663|LMX1B_HUMAN  LIM homeobox transcription...    40   9e-04 
gi|47117908|sp|Q9BZI1|IRX2_HUMAN  Iroquois-class homeodomain...    40   0.001 
gi|28202257|sp|P14859|PO2F1_HUMAN  POU domain, class 2, tran...    39   0.002 
gi|47117872|sp|P78412|IRX6_HUMAN  Iroquois-class homeodomain...    36   0.016 
gi|60416412|sp|P48742|LHX1_HUMAN  LIM/homeobox protein Lhx1 ...    35   0.027 
gi|12644347|sp|P78413|IRX4_HUMAN  Iroquois-class homeodomain...    35   0.027 
gi|730281|sp|P40426|PBX3_HUMAN  Pre-B-cell leukemia transcri...    35   0.047 
gi|2495306|sp|Q14863|PO6F1_HUMAN  POU domain, class 6, trans...    35   0.047 
gi|47606423|sp|P61371|ISL1_HUMAN  Insulin gene enhancer prot...    35   0.047 
gi|47117873|sp|P78414|IRX1_HUMAN  Iroquois-class homeodomain...    35   0.047 
gi|28201884|sp|P78424|PO6F2_HUMAN  POU domain, class 6, tran...    34   0.061 
gi|18202938|sp|Q9H2C1|LHX5_HUMAN  LIM/homeobox protein Lhx5        34   0.080 
gi|2495300|sp|Q12837|PO42_HUMAN  POU domain, class 4, transc...    33   0.10  
gi|1709437|sp|Q03052|PO3F1_HUMAN  POU domain, class 3, trans...    33   0.10  
gi|20141754|sp|P41778|PBX1_MOUSE  Pre-B-cell leukemia transc...    33   0.14  
gi|37999770|sp|Q9BYU1|PBX4_HUMAN  Pre-B-cell leukemia transc...    33   0.14  
gi|123408|sp|P28069|PIT1_HUMAN  Pituitary-specific positive ...    33   0.18  
gi|2833271|sp|Q15853|USF2_HUMAN  Upstream stimulatory factor...    32   0.40  
gi|2495302|sp|Q15319|PO43_HUMAN  POU domain, class 4, transc...    31   0.52  
gi|46396941|sp|Q8N196|SIX5_HUMAN  Homeobox protein SIX5 (DM ...    31   0.52  
gi|28202258|sp|P20265|PO3F2_HUMAN  POU domain, class 3, tran...    31   0.67  
gi|12230612|sp|Q9UIU6|SIX4_HUMAN  Homeobox protein SIX4 (Sin...    31   0.67  
gi|28201861|sp|Q9UKI9|PO2F3_HUMAN  POU domain, class 2, tran...    31   0.67  
gi|2506535|sp|Q01851|PO4F1_HUMAN  POU domain, class 4, trans...    31   0.67  
gi|8134810|sp|O60320|Y574_HUMAN  Hypothetical protein KIAA0574     31   0.67  
gi|2495290|sp|Q15475|SIX1_HUMAN  Homeobox protein SIX1 (Sine...    30   1.2   
gi|2506534|sp|P20264|PO33_HUMAN  POU domain, class 3, transc...    30   1.2   
gi|6094293|sp|O95343|SIX3_HUMAN  Homeobox protein SIX3 (Sine...    30   1.5   
gi|1345629|sp|P49335|PO3F4_HUMAN  POU domain, class 3, trans...    30   1.5   
gi|32699572|sp|Q8NG57|ELOA3_HUMAN  RNA polymerase II transcr...    30   1.5   
gi|30173473|sp|Q96T25|ZIC5_HUMAN  Zinc finger protein ZIC 5 ...    29   2.0   
gi|12230598|sp|Q9NPC8|SIX2_HUMAN  Homeobox protein SIX2 (Sin...    29   2.0   
gi|44888551|sp|Q9UKY1|ZHX1_HUMAN  Zinc fingers and homeoboxe...    29   2.6   
gi|135304|sp|P17275|JUNB_HUMAN  Transcription factor jun-B         29   2.6   
gi|50401058|sp|Q8IU89|LSS3_HUMAN  LAG1 longevity assurance h...    29   2.6   
gi|3183005|sp|Q99502|EYA1_HUMAN  Eyes absent homolog 1             28   3.3   
gi|27805750|sp|Q9GZN2|TGIF2_HUMAN  Homeobox protein TGIF2 (T...    28   3.3   
gi|729094|sp|P39880|CUTL1_HUMAN  CCAAT displacement protein ...    28   5.7   
gi|5921169|sp|O15265|ATX7_HUMAN  Ataxin-7 (Spinocerebellar a...    28   5.7   
gi|28201858|sp|Q06416|PO5L_HUMAN  POU domain, class 5, trans...    27   7.5   
gi|13124794|sp|P52756|RBM5_HUMAN  RNA-binding protein 5 (RNA...    27   7.5   
gi|41688792|sp|Q9BYP7|WNK3_HUMAN  Serine/threonine-protein k...    27   7.5   
gi|28201859|sp|Q9BZV7|PO5M_HUMAN  POU domain, class 5, trans...    27   7.5   
gi|1705708|sp|P15391|CD19_HUMAN  B-lymphocyte antigen CD19 p...    27   7.5   
gi|20139982|sp|O75635|SPB7_HUMAN  Megsin (TP55) (Serpin B7)        27   9.7   


Alignments

>gi|6016293|sp|O43365|HXA3_HUMAN   Homeobox protein Hox-A3 (Hox-1E)
          Length = 443

 Score =  402 bits (1033), Expect = e-113
 Identities = 214/316 (67%), Positives = 220/316 (69%), Gaps = 9/316 (2%)

Query: 27  NANQQPYPASAALGADGEYHRPACSLQ-------SPSSAGGHPKAHELSESCAGDKSPPG 79
           NA+  P PA+AA       + P  + Q       S  +      +    ESCAGDKSPPG
Sbjct: 130 NASNNPTPANAAKSP--LLNSPTVAKQIFPWMKESRQNTKQKTSSSSSGESCAGDKSPPG 187

Query: 80  QASSKRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYK 139
           QASSKRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYK
Sbjct: 188 QASSKRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYK 247

Query: 140 KDQKGKGMLTSSGGQSPSRSPVPPGAGGYLNSMHSLVNXXXXXXXXXXXXXXXXQGTYGL 199
           KDQKGKGMLTSSGGQSPSRSPVPPGAGGYLNSMHSLVN                QGTYGL
Sbjct: 248 KDQKGKGMLTSSGGQSPSRSPVPPGAGGYLNSMHSLVNSVPYEPQSPPPFSKPPQGTYGL 307

Query: 200 XXXXXXXXXXXXXXXXXXQKRYTXXXXXXXXTPDYDPHAHGLQGNGSYGTPHIQGSPVFV 259
                             QKRYT        TPDYDPHAHGLQGNGSYGTPHIQGSPVFV
Sbjct: 308 PPASYPASLPSCAPPPPPQKRYTAAGAGAGGTPDYDPHAHGLQGNGSYGTPHIQGSPVFV 367

Query: 260 GGSYVEPMSNSGPALFGLTHLPHAASGAMDYXXXXXXXXXXXXXXXXXXXXXTYTDLTGH 319
           GGSYVEPMSNSGPALFGLTHLPHAASGAMDY                     TYTDLTGH
Sbjct: 368 GGSYVEPMSNSGPALFGLTHLPHAASGAMDYGGAGPLGSGHHHGPGPGEPHPTYTDLTGH 427

Query: 320 HPSQGRIQEAPKLTHL 335
           HPSQGRIQEAPKLTHL
Sbjct: 428 HPSQGRIQEAPKLTHL 443



 Score =  155 bits (391), Expect = 2e-38
 Identities = 75/84 (89%), Positives = 76/84 (90%), Gaps = 1/84 (1%)

Query: 1  MQKATYYDSSAIYGGYPYQAANGFAYNANQQPYPASAALGADGEYHRPACSLQSPSSAGG 60
          MQKATYYDSSAIYGGYPYQAANGFAYNANQQPYPASAALGADGEYHRPACSLQSPSSAGG
Sbjct: 1  MQKATYYDSSAIYGGYPYQAANGFAYNANQQPYPASAALGADGEYHRPACSLQSPSSAGG 60

Query: 61 HPKAHELSESCAGDKS-PPGQASS 83
          HPKAHELSE+C    S PP Q  S
Sbjct: 61 HPKAHELSEACLRTLSAPPSQPPS 84



>gi|123268|sp|P14651|HXB3_HUMAN   Homeobox protein Hox-B3 (Hox-2G) (Hox-2.7)
          Length = 431

 Score =  240 bits (613), Expect = 4e-64
 Identities = 142/270 (52%), Positives = 166/270 (61%), Gaps = 23/270 (8%)

Query: 73  GDKSPPGQASSKRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQ 132
           GDKSPPG A+SKRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNL+ERQIKIWFQ
Sbjct: 178 GDKSPPGSAASKRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLSERQIKIWFQ 237

Query: 133 NRRMKYKKDQKGKGMLTSSGGQSPSRSPVPP--GAGGYLNSMHSLVNXXXXXXXXXXXXX 190
           NRRMKYKKDQK KG+ +SSGG SP+ SP  P     G++N++HS+               
Sbjct: 238 NRRMKYKKDQKAKGLASSSGGPSPAGSPPQPMQSTAGFMNALHSM--TPSYESPSPPAFG 295

Query: 191 XXXQGTYGLXXXXXXXXXXXXXXXXXXQKRYTXXXXXXXXTPDYDPHAHGLQGN-GSYGT 249
              Q  Y L                   ++Y          P+Y+PH   LQ N G+YGT
Sbjct: 296 KAHQNAYAL-----PSNYQPPLKGCGAPQKYP-----PTPAPEYEPHV--LQANGGAYGT 343

Query: 250 PHIQGSPVFV-GGSYVEPM-SNSGPALFGLTHLPHAASGAMDYXXXXXXXXXXXXXXXXX 307
           P +QGSPV+V GG Y +P+   +GP+L+GL HL H  SG +DY                 
Sbjct: 344 PTMQGSPVYVGGGGYADPLPPPAGPSLYGLNHLSHHPSGNLDY--NGAPPMAPSQHHGPC 401

Query: 308 XXXXTYTDLTGHH--PSQGRIQEAPKLTHL 335
               TYTDL+ HH  P QGRIQEAPKLTHL
Sbjct: 402 EPHPTYTDLSSHHAPPPQGRIQEAPKLTHL 431



 Score = 72.8 bits (177), Expect = 2e-13
 Identities = 44/102 (43%), Positives = 58/102 (56%), Gaps = 11/102 (10%)

Query: 1   MQKATYYDSSA--IYGGYP-YQAANGFAYNANQQPYPASAALGADGEYHRPACSLQSPSS 57
           MQKATYYD++A  ++GGY  Y  +NGF ++   QP P  AA   +G+Y R ACSLQS  +
Sbjct: 1   MQKATYYDNAAAALFGGYSSYPGSNGFGFDVPPQP-PFQAATHLEGDYQRSACSLQSLGN 59

Query: 58  AGGHPKAHELSESCAGD-------KSPPGQASSKRARTAYTS 92
           A  H K+ EL+ SC           +PPG      A T+ TS
Sbjct: 60  AAPHAKSKELNGSCMRPGLAPETLSAPPGSPPPSAAPTSATS 101



>gi|6166222|sp|P31249|HXD3_HUMAN   Homeobox protein Hox-D3 (Hox-4A)
          Length = 416

 Score =  227 bits (578), Expect = 5e-60
 Identities = 135/269 (50%), Positives = 156/269 (57%), Gaps = 20/269 (7%)

Query: 69  ESCAGDKSPPGQASSKRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIK 128
           ESC  DKSPPG AS KR RTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIK
Sbjct: 166 ESCE-DKSPPGPAS-KRVRTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIK 223

Query: 129 IWFQNRRMKYKKDQKGKGMLTSSGGQSPSRSPVPPGAGGYLNSMHSL--VNXXXXXXXXX 186
           IWFQNRRMKYKKDQK KG+L S   QSP RSP   GA G++     L  V          
Sbjct: 224 IWFQNRRMKYKKDQKAKGILHSPASQSPERSPPLGGAAGHVAYSGQLPPVPGLAYDAPSP 283

Query: 187 XXXXXXXQGTYGLXXXXXXXXXXXXXXXXXXQKRYTXXXXXXXXTPDYDPHAHGLQGNGS 246
                     YGL                  QKRY          P+++PH     G G 
Sbjct: 284 PAFAKSQPNMYGL-----AAYTAPLSSCLPQQKRY--------AAPEFEPHPMASNG-GG 329

Query: 247 YGTPHIQGSPVFVGGSYVEPMSNSGPALFGLTHLPHAASGAMDYXXXXXXXXXXXXXXXX 306
           + + ++QGSPV+VGG++VE M+ +   +F L HL H +S ++DY                
Sbjct: 330 FASANLQGSPVYVGGNFVESMAPASGPVFNLGHLSHPSSASVDY--SCAAQIPGNHHHGP 387

Query: 307 XXXXXTYTDLTGHHPSQGRIQEAPKLTHL 335
                TYTDL+ HH SQGR+ EAPKLTHL
Sbjct: 388 CDPHPTYTDLSAHHSSQGRLPEAPKLTHL 416



 Score = 56.6 bits (135), Expect = 1e-08
 Identities = 37/100 (37%), Positives = 51/100 (51%), Gaps = 16/100 (16%)

Query: 1  MQKATYYDSSAIYGGYPY-QAANGFAYNANQQPYPASAALGA-DGEYHRPACSLQS--PS 56
          MQKA YY++  ++GGY Y +  + + Y+   QPYP  AA  + D +Y   ACS+QS  P 
Sbjct: 1  MQKAAYYENPGLFGGYGYSKTTDTYGYSTPHQPYPPPAAASSLDTDYPGSACSIQSSAPL 60

Query: 57 SAGGHPKAHELSESC-----------AGDKSPPGQASSKR 85
           A  H K  EL+ SC            G   PPG  S ++
Sbjct: 61 RAPAH-KGAELNGSCMRPGTGNSQGGGGGSQPPGLNSEQQ 99



>gi|123270|sp|P14652|HXB2_HUMAN   Homeobox protein Hox-B2 (Hox-2H) (Hox-2.8) (K8)
          Length = 356

 Score =  110 bits (276), Expect = 5e-25
 Identities = 59/120 (49%), Positives = 76/120 (63%), Gaps = 9/120 (7%)

Query: 47  RPACSLQSPSSAGGHPKAHELSESCAGDKSPP-GQASSKRARTAYTSAQLVELEKEFHFN 105
           +P+ S  SPS A     A  +     G   P  G   ++R RTAYT+ QL+ELEKEFHFN
Sbjct: 106 KPSQSATSPSPAASAVPASGVGSPADGLGLPEAGGGGARRLRTAYTNTQLLELEKEFHFN 165

Query: 106 RYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKDQKGKGMLTSSGGQSPSRSPVPPGA 165
           +YLCRPRRVE+A LL+LTERQ+K+WFQNRRMK+K+  + +        + P   P  PGA
Sbjct: 166 KYLCRPRRVEIAALLDLTERQVKVWFQNRRMKHKRQTQHR--------EPPDGEPACPGA 217



>gi|6016292|sp|O43364|HXA2_HUMAN   Homeobox protein Hox-A2
          Length = 376

 Score =  107 bits (267), Expect = 6e-24
 Identities = 62/137 (45%), Positives = 80/137 (58%), Gaps = 19/137 (13%)

Query: 16  YPYQAANGFAYNANQQPYPASAALGADGEYHRPACSLQSPSSAGGHPKAHELSESCAGDK 75
           YP+      A      P  A+AA  A      PAC          H ++ E+++   G  
Sbjct: 95  YPWMKEKKAAKKTALLPAAAAAATAAATG---PACL--------SHKESLEIADGSGG-- 141

Query: 76  SPPGQASSKRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRR 135
                  S+R RTAYT+ QL+ELEKEFHFN+YLCRPRRVE+A LL+LTERQ+K+WFQNRR
Sbjct: 142 ------GSRRLRTAYTNTQLLELEKEFHFNKYLCRPRRVEIAALLDLTERQVKVWFQNRR 195

Query: 136 MKYKKDQKGKGMLTSSG 152
           MK+K+  + K    S G
Sbjct: 196 MKHKRQTQCKENQNSEG 212



>gi|1708540|sp|P52945|IPF1_HUMAN   Insulin promoter factor-1 (IPF-1) (Pancreas/duodenum homeobox-1)
           (PDX-1) (Islet/duodenum homeobox-1) (IDX-1)
           (Somatostatin transactivating factor-1) (STF-1) (Insulin
           upstream factor-1) (IUF-1) (Glucose-sensitive factor)
           (GSF)
          Length = 283

 Score =  107 bits (267), Expect = 6e-24
 Identities = 67/152 (44%), Positives = 81/152 (53%), Gaps = 20/152 (13%)

Query: 32  PYPASAALGADGEYHRPACSLQSPSSAGGHPKAHELSESCAGDKSPPGQASSKRARTAYT 91
           P+P  A  G   E +R    +Q P       KAH      AG         +KR RTAYT
Sbjct: 99  PFPEGAEPGVLEEPNR----VQLPFPWMKSTKAHAWKGQWAGGAYAAEPEENKRTRTAYT 154

Query: 92  SAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKDQ---KGKGML 148
            AQL+ELEKEF FN+Y+ RPRRVE+A +LNLTER IKIWFQNRRMK+KK++   +G G  
Sbjct: 155 RAQLLELEKEFLFNKYISRPRRVELAVMLNLTERHIKIWFQNRRMKWKKEEDKKRGGGTA 214

Query: 149 TSSGGQSPSRS-------------PVPPGAGG 167
              GG +                 P PP  GG
Sbjct: 215 VGGGGVAEPEQDCAVTSGEELLALPPPPPPGG 246



>gi|400000|sp|P09067|HXB5_HUMAN   Homeobox protein Hox-B5 (Hox-2A) (HHO.C10) (HU-1)
          Length = 269

 Score =  103 bits (258), Expect = 6e-23
 Identities = 60/129 (46%), Positives = 73/129 (56%), Gaps = 14/129 (10%)

Query: 41  ADGEYHRPACSLQSPSSAGGHPKAHELSESCAGDKSPP--------------GQASSKRA 86
           A  E    A  L SPS A   P+    S +    ++P                    KRA
Sbjct: 138 ASSEPEEAASQLSSPSLARAQPEPMATSTAAPEGQTPQIFPWMRKLHISHDMTGPDGKRA 197

Query: 87  RTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKDQKGKG 146
           RTAYT  Q +ELEKEFHFNRYL R RR+E+A+ L L+ERQIKIWFQNRRMK+KKD K K 
Sbjct: 198 RTAYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLSERQIKIWFQNRRMKWKKDNKLKS 257

Query: 147 MLTSSGGQS 155
           M  ++ G +
Sbjct: 258 MSLATAGSA 266



>gi|20141491|sp|P09016|HXD4_HUMAN   Homeobox protein Hox-D4 (Hox-4B) (Hox-5.1) (HHO.C13)
          Length = 255

 Score =  102 bits (253), Expect = 2e-22
 Identities = 53/83 (63%), Positives = 62/83 (74%), Gaps = 3/83 (3%)

Query: 84  KRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKDQK 143
           KR+RTAYT  Q++ELEKEFHFNRYL R RR+E+A+ L L+ERQIKIWFQNRRMK+KKD K
Sbjct: 155 KRSRTAYTRQQVLELEKEFHFNRYLTRRRRIEIAHTLCLSERQIKIWFQNRRMKWKKDHK 214

Query: 144 ---GKGMLTSSGGQSPSRSPVPP 163
               KG  +SS   S   S V P
Sbjct: 215 LPNTKGRSSSSSSSSSCSSSVAP 237



>gi|52788238|sp|P20719|HXA5_HUMAN   Homeobox protein Hox-A5 (Hox-1C)
          Length = 270

 Score =  101 bits (252), Expect = 3e-22
 Identities = 50/75 (66%), Positives = 58/75 (77%)

Query: 79  GQASSKRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKY 138
           G    KRARTAYT  Q +ELEKEFHFNRYL R RR+E+A+ L L+ERQIKIWFQNRRMK+
Sbjct: 191 GGPEGKRARTAYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLSERQIKIWFQNRRMKW 250

Query: 139 KKDQKGKGMLTSSGG 153
           KKD K K M  ++ G
Sbjct: 251 KKDNKLKSMSMAAAG 265



>gi|6166217|sp|Q00056|HXA4_HUMAN   Homeobox protein Hox-A4 (Hox-1D) (Hox-1.4)
          Length = 320

 Score =  100 bits (250), Expect = 5e-22
 Identities = 65/140 (46%), Positives = 81/140 (57%), Gaps = 14/140 (10%)

Query: 34  PASAALGADGEYHRPACSL----QSPSSAGG-----HPKAHELSESCAGDKSPPGQASSK 84
           PA+  + A G    PAC L    +SP    G     +P   ++  S        G+   K
Sbjct: 161 PATPGVPAGGS--APACPLLLADKSPLGLKGKEPVVYPWMKKIHVSAVNPSYNGGEP--K 216

Query: 85  RARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKDQKG 144
           R+RTAYT  Q++ELEKEFHFNRYL R RR+E+A+ L L+ERQ+KIWFQNRRMK+KKD K 
Sbjct: 217 RSRTAYTRQQVLELEKEFHFNRYLTRRRRIEIAHTLCLSERQVKIWFQNRRMKWKKDHKL 276

Query: 145 KGMLTSSGGQSPSRSPVPPG 164
                 S   S S S  PPG
Sbjct: 277 PNTKMRS-SNSASASAGPPG 295



>gi|547692|sp|P17483|HXB4_HUMAN   Homeobox protein Hox-B4 (Hox-2F) (Hox-2.6)
          Length = 251

 Score =  100 bits (249), Expect = 7e-22
 Identities = 52/81 (64%), Positives = 61/81 (75%), Gaps = 1/81 (1%)

Query: 84  KRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKDQK 143
           KR+RTAYT  Q++ELEKEFH+NRYL R RRVE+A+ L L+ERQIKIWFQNRRMK+KKD K
Sbjct: 163 KRSRTAYTRQQVLELEKEFHYNRYLTRRRRVEIAHALCLSERQIKIWFQNRRMKWKKDHK 222

Query: 144 GKGMLTSSGGQSPSRSPVPPG 164
                  SGG + S    PPG
Sbjct: 223 LPNTKIRSGGAAGSAGG-PPG 242



>gi|17378648|sp|Q9GZZ0|HXD1_HUMAN   Homeobox protein Hox-D1
          Length = 328

 Score = 99.4 bits (246), Expect = 2e-21
 Identities = 68/175 (38%), Positives = 95/175 (54%), Gaps = 20/175 (11%)

Query: 6   YYDSSAIY-GGYPYQAANGFAYNANQQPYPASAALGADGEYHRPACSLQSP--------- 55
           +Y +SA++ GG  +  +    Y A  +P P  A L A  + H  A    SP         
Sbjct: 133 HYATSAVFSGGGSFLLSGQVDYAAFGEPGPFPACLKASADGHPGAFQTASPAPGTYPKSV 192

Query: 56  SSAGGHPKAHELSE--------SCAGDKSPPGQASSKRA-RTAYTSAQLVELEKEFHFNR 106
           S A G P A    E        S  G  +  G AS   A RT +++ QL ELEKEFHFN+
Sbjct: 193 SPASGLPAAFSTFEWMKVKRNASKKGKLAEYGAASPSSAIRTNFSTKQLTELEKEFHFNK 252

Query: 107 YLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKDQKGKGMLTSSGGQSPSRSPV 161
           YL R RR+E+AN L+L + Q+KIWFQNRRMK KK ++ +G+L ++   +P + P+
Sbjct: 253 YLTRARRIEIANCLHLNDTQVKIWFQNRRMKQKKRER-EGLLATAIPVAPLQLPL 306



>gi|3915721|sp|P31268|HXA7_HUMAN   Homeobox protein Hox-A7 (Hox-1A) (Hox 1.1)
          Length = 230

 Score = 99.4 bits (246), Expect = 2e-21
 Identities = 68/158 (43%), Positives = 84/158 (53%), Gaps = 27/158 (17%)

Query: 26  YNAN----QQPYPASAALGADGEYHRPACS-------LQSPSSAGGHPKAHELSESCAGD 74
           YN N    Q P+ +   LGAD   + P  S       L S  + G   K  E +   A +
Sbjct: 55  YNVNSPLYQSPFASGYGLGADAYGNLPCASYDQNIPGLCSDLAKGACDKTDEGALHGAAE 114

Query: 75  KS---PPGQASS----KRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQI 127
            +    P   SS    KR R  YT  Q +ELEKEFHFNRYL R RR+E+A+ L LTERQI
Sbjct: 115 ANFRIYPWMRSSGPDRKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQI 174

Query: 128 KIWFQNRRMKYKKDQKGKGMLTSSGGQSPSRSPVPPGA 165
           KIWFQNRRMK+KK+ K +G         P+ +  P GA
Sbjct: 175 KIWFQNRRMKWKKEHKDEG---------PTAAAAPEGA 203



>gi|232262|sp|Q00444|HXC5_HUMAN   Homeobox protein Hox-C5 (Hox-3D) (CP11)
          Length = 222

 Score = 96.3 bits (238), Expect = 1e-20
 Identities = 46/66 (69%), Positives = 53/66 (80%)

Query: 80  QASSKRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYK 139
           +   KR+RT+YT  Q +ELEKEFHFNRYL R RR+E+AN L L ERQIKIWFQNRRMK+K
Sbjct: 152 ETDGKRSRTSYTRYQTLELEKEFHFNRYLTRRRRIEIANNLCLNERQIKIWFQNRRMKWK 211

Query: 140 KDQKGK 145
           KD K K
Sbjct: 212 KDSKMK 217



>gi|27923786|sp|Q9H4S2|GSHI_HUMAN   Homeobox protein GSH-1
          Length = 264

 Score = 95.1 bits (235), Expect = 3e-20
 Identities = 48/91 (52%), Positives = 60/91 (65%)

Query: 74  DKSPPGQASSKRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQN 133
           D S     SSKR RTA+TS QL+ELE+EF  N YL R RR+E+A  LNL+E+Q+KIWFQN
Sbjct: 138 DSSSNQLPSSKRMRTAFTSTQLLELEREFASNMYLSRLRRIEIATYLNLSEKQVKIWFQN 197

Query: 134 RRMKYKKDQKGKGMLTSSGGQSPSRSPVPPG 164
           RR+K+KK+ KG       GG +      P G
Sbjct: 198 RRVKHKKEGKGSNHRGGGGGGAGGGGSAPQG 228



>gi|123279|sp|P09017|HXC4_HUMAN   Homeobox protein Hox-C4 (Hox-3E) (CP19)
          Length = 264

 Score = 95.1 bits (235), Expect = 3e-20
 Identities = 56/119 (47%), Positives = 71/119 (59%), Gaps = 7/119 (5%)

Query: 31  QPYPASAALGADGEYHRPACSLQSP----SSAGGHPKAHELSESCAGDKSPPGQ--ASSK 84
           +P P S A  A      PACS  +P    S+A   P  +   +        P       K
Sbjct: 99  EPAPLSGA-SASPSPAPPACSQPAPDHPSSAASKQPIVYPWMKKIHVSTVNPNYNGGEPK 157

Query: 85  RARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKDQK 143
           R+R AYT  Q++ELEKEFH+NRYL R RR+E+A+ L L+ERQIKIWFQNRRMK+KKD +
Sbjct: 158 RSRAAYTRQQVLELEKEFHYNRYLTRRRRIEIAHSLCLSERQIKIWFQNRRMKWKKDHR 216



>gi|20138327|sp|Q9BZM3|GSH2_HUMAN   Homeobox protein GSH-2
          Length = 304

 Score = 94.4 bits (233), Expect = 5e-20
 Identities = 56/128 (43%), Positives = 78/128 (60%), Gaps = 5/128 (3%)

Query: 17  PYQAANGFAYNANQQPYPASAALGADGEYHRPACSLQSPSSAGGHPKAHELSESCAGDKS 76
           P Q  +  A  A      A+AALG   ++H P C+  + + A    + H L+   +    
Sbjct: 141 PQQPGSAAAAAAAAAAAAAAAALGHP-QHHAPVCTATTYNVADPR-RFHCLTMGGSDASQ 198

Query: 77  PPGQASSKRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRM 136
            P   + KR RTA+TS QL+ELE+EF  N YL R RR+E+A  LNL+E+Q+KIWFQNRR+
Sbjct: 199 VP---NGKRMRTAFTSTQLLELEREFSSNMYLSRLRRIEIATYLNLSEKQVKIWFQNRRV 255

Query: 137 KYKKDQKG 144
           K+KK+ KG
Sbjct: 256 KHKKEGKG 263



>gi|123255|sp|P09629|HXB7_HUMAN   Homeobox protein Hox-B7 (Hox-2C) (HHO.C1)
          Length = 217

 Score = 94.4 bits (233), Expect = 5e-20
 Identities = 68/187 (36%), Positives = 86/187 (45%), Gaps = 46/187 (24%)

Query: 6   YYDSSAIY--GGYPYQAANGFAYNANQQPYPASAAL-----------GADGEYHRPACSL 52
           Y  SS+++  G +P Q +  FA N  +  Y A +             G  G   + A  +
Sbjct: 14  YPASSSVFATGAFPEQTSCAFASNPQRPGYGAGSGASFAGSMQGLYPGGGGMAGQSAAGV 73

Query: 53  QS------PSSAGGH--PKAHELSESCAGDKSPPGQASS--------------------- 83
            +      PSS   H  P    LS  C GD +    A                       
Sbjct: 74  YAAGYGLEPSSFNMHCAPFEQNLSGVCPGDSAKAAGAKEQRDSDLAAESNFRIYPWMRSS 133

Query: 84  ----KRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYK 139
               KR R  YT  Q +ELEKEFH+NRYL R RR+E+A+ L LTERQIKIWFQNRRMK+K
Sbjct: 134 GTDRKRGRQTYTRYQTLELEKEFHYNRYLTRRRRIEIAHTLCLTERQIKIWFQNRRMKWK 193

Query: 140 KDQKGKG 146
           K+ K  G
Sbjct: 194 KENKTAG 200



>gi|17378385|sp|P31267|HXA6_HUMAN   Homeobox protein Hox-A6 (Hox-1B)
          Length = 233

 Score = 93.6 bits (231), Expect = 8e-20
 Identities = 50/90 (55%), Positives = 60/90 (66%), Gaps = 3/90 (3%)

Query: 70  SCAGDKSPPGQASSKRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKI 129
           SCAG       +  +R R  YT  Q +ELEKEFHFNRYL R RR+E+AN L LTERQIKI
Sbjct: 145 SCAGAVYG---SHGRRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIANALCLTERQIKI 201

Query: 130 WFQNRRMKYKKDQKGKGMLTSSGGQSPSRS 159
           WFQNRRMK+KK+ K       SG  S +++
Sbjct: 202 WFQNRRMKWKKENKLINSTQPSGEDSEAKA 231



>gi|20141493|sp|P09630|HXC6_HUMAN   Homeobox protein Hox-C6 (Hox-3C) (HHO.C8) (CP25)
          Length = 235

 Score = 93.6 bits (231), Expect = 8e-20
 Identities = 46/79 (58%), Positives = 56/79 (70%)

Query: 81  ASSKRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKK 140
           A  +R R  Y+  Q +ELEKEFHFNRYL R RR+E+AN L LTERQIKIWFQNRRMK+KK
Sbjct: 139 ADRRRGRQIYSRYQTLELEKEFHFNRYLTRRRRIEIANALCLTERQIKIWFQNRRMKWKK 198

Query: 141 DQKGKGMLTSSGGQSPSRS 159
           +      L+  GG + + S
Sbjct: 199 ESNLTSTLSGGGGGATADS 217



>gi|123271|sp|P14653|HXB1_HUMAN   Homeobox protein Hox-B1 (Hox-2I)
          Length = 301

 Score = 92.0 bits (227), Expect = 2e-19
 Identities = 49/89 (55%), Positives = 57/89 (64%), Gaps = 10/89 (11%)

Query: 76  SPPGQASSKRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRR 135
           S PG  S    RT +T+ QL ELEKEFHFN+YL R RRVE+A  L L E Q+KIWFQNRR
Sbjct: 196 SEPGLGSPSGLRTNFTTRQLTELEKEFHFNKYLSRARRVEIAATLELNETQVKIWFQNRR 255

Query: 136 MKYKKDQKGKGMLTSSGGQSPSRSPVPPG 164
           MK KK ++        GG+ P   P PPG
Sbjct: 256 MKQKKRER-------EGGRVP---PAPPG 274



>gi|45644931|sp|P50219|HLXB9_HUMAN   Homeobox protein HB9
          Length = 403

 Score = 90.5 bits (223), Expect = 7e-19
 Identities = 67/158 (42%), Positives = 79/158 (50%), Gaps = 32/158 (20%)

Query: 15  GYPYQAANGFAYNANQQPYPASAALGADGEYHRPACSLQSPSSAGGHPKAHE-------- 66
           G P QAA    Y      Y A+AA  A    H PA S   P   G HP AH         
Sbjct: 153 GLPAQAA---LYGHPVYGYSAAAAAAALAGQH-PALSYSYPQVQGAHP-AHPADPIKLGA 207

Query: 67  --------LSESCAGDKSPP-----GQASS------KRARTAYTSAQLVELEKEFHFNRY 107
                   L  S AG   P       QA S      +R RTA+TS QL+ELE +F  N+Y
Sbjct: 208 GTFQLDQWLRASTAGMILPKMPDFNSQAQSNLLGKCRRPRTAFTSQQLLELEHQFKLNKY 267

Query: 108 LCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKDQKGK 145
           L RP+R E+A  L LTE Q+KIWFQNRRMK+K+ +K K
Sbjct: 268 LSRPKRFEVATSLMLTETQVKIWFQNRRMKWKRSKKAK 305



>gi|13124738|sp|P17509|HXB6_HUMAN   Homeobox protein Hox-B6 (Hox-2B) (Hox-2.2) (HU-2)
          Length = 224

 Score = 90.1 bits (222), Expect = 9e-19
 Identities = 42/62 (67%), Positives = 50/62 (80%)

Query: 82  SSKRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKD 141
           S +R R  YT  Q +ELEKEFH+NRYL R RR+E+A+ L LTERQIKIWFQNRRMK+KK+
Sbjct: 145 SGRRGRQTYTRYQTLELEKEFHYNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKE 204

Query: 142 QK 143
            K
Sbjct: 205 SK 206



>gi|123286|sp|P28356|HXD9_HUMAN   Homeobox protein Hox-D9 (Hox-4C) (Hox-5.2)
          Length = 342

 Score = 88.2 bits (217), Expect = 4e-18
 Identities = 49/110 (44%), Positives = 65/110 (59%), Gaps = 1/110 (0%)

Query: 36  SAALGADGEYHRPACSLQSPSSAGGHPKAHELSESCAGDKSPPGQASSKRARTAYTSAQL 95
           S+   A  ++  P CSL+        P+  +L  +   + +     S+++ R  YT  Q 
Sbjct: 229 SSEPSACSDHPIPGCSLKEEEKQHSQPQQQQLDPNNP-EANWIHARSTRKKRCPYTKYQT 287

Query: 96  VELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKDQKGK 145
           +ELEKEF FN YL R RR E+A +LNLTERQ+KIWFQNRRMK KK  K K
Sbjct: 288 LELEKEFLFNMYLTRDRRYEVARILNLTERQVKIWFQNRRMKMKKMSKEK 337



>gi|6166216|sp|P49639|HXA1_HUMAN   Homeobox protein Hox-A1 (Hox-1F)
          Length = 335

 Score = 87.8 bits (216), Expect = 5e-18
 Identities = 61/151 (40%), Positives = 79/151 (52%), Gaps = 23/151 (15%)

Query: 15  GYPYQAANGFAYNANQQPYPASAALGADGEYHRPACSLQSPSSAGGHP---------KAH 65
           G  +Q+     YN +  P  AS         H+ AC  +SP+S    P         K +
Sbjct: 165 GQEHQSLALATYNNSLSPLHAS---------HQEAC--RSPASETSSPAQTFDWMKVKRN 213

Query: 66  ELSESCAGDKSPPGQASSKRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTER 125
                  G+    GQ ++   RT +T+ QL ELEKEFHFN+YL R RRVE+A  L L E 
Sbjct: 214 PPKTGKVGEYGYLGQPNA--VRTNFTTKQLTELEKEFHFNKYLTRARRVEIAASLQLNET 271

Query: 126 QIKIWFQNRRMKYKKDQKGKGMLTSSGGQSP 156
           Q+KIWFQNRRMK KK +K +G+L  S    P
Sbjct: 272 QVKIWFQNRRMKQKKREK-EGLLPISPATPP 301



>gi|20141507|sp|P17482|HXB9_HUMAN   Homeobox protein Hox-B9 (Hox-2E) (Hox-2.5)
          Length = 250

 Score = 85.9 bits (211), Expect = 2e-17
 Identities = 57/136 (41%), Positives = 70/136 (51%), Gaps = 19/136 (13%)

Query: 30  QQPYPASAALGADGEYHRPACSLQSPSSAGGHPKA-------HELSESCAG--DKSPPGQ 80
           Q    A   LGA GE  +      S  ++ G           +  ++ C G  DK  P Q
Sbjct: 113 QAAVKAEPLLGAPGELLKQGTPEYSLETSAGREAVLSNQRPGYGDNKICEGSEDKERPDQ 172

Query: 81  A----------SSKRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIW 130
                      SS++ R  YT  Q +ELEKEF FN YL R RR E+A LLNL+ERQ+KIW
Sbjct: 173 TNPSANWLHARSSRKKRCPYTKYQTLELEKEFLFNMYLTRDRRHEVARLLNLSERQVKIW 232

Query: 131 FQNRRMKYKKDQKGKG 146
           FQNRRMK KK  K +G
Sbjct: 233 FQNRRMKMKKMNKEQG 248



>gi|20141537|sp|P31274|HXC9_HUMAN   Homeobox protein Hox-C9 (Hox-3B)
          Length = 260

 Score = 84.7 bits (208), Expect = 4e-17
 Identities = 57/149 (38%), Positives = 72/149 (48%), Gaps = 19/149 (12%)

Query: 16  YPYQAANGFAYNANQQPYPASAA--------------LGADGEYH-RPACSLQSPSSAGG 60
           +P   A G  Y      YP   A               G+ GE   R   +L SP +   
Sbjct: 106 FPSFPAGGRHYALKPDAYPGRRADCGPGEGRSYPDYMYGSPGELRDRAPQTLPSPEADAL 165

Query: 61  HPKAHELSESCAGDKSPPGQ----ASSKRARTAYTSAQLVELEKEFHFNRYLCRPRRVEM 116
               H+  ++     +P        S+++ R  YT  Q +ELEKEF FN YL R RR E+
Sbjct: 166 AGSKHKEEKADLDPSNPVANWIHARSTRKKRCPYTKYQTLELEKEFLFNMYLTRDRRYEV 225

Query: 117 ANLLNLTERQIKIWFQNRRMKYKKDQKGK 145
           A +LNLTERQ+KIWFQNRRMK KK  K K
Sbjct: 226 ARVLNLTERQVKIWFQNRRMKMKKMNKEK 254



>gi|6166219|sp|P31269|HXA9_HUMAN   Homeobox protein Hox-A9 (Hox-1G)
          Length = 272

 Score = 84.7 bits (208), Expect = 4e-17
 Identities = 51/108 (47%), Positives = 62/108 (57%), Gaps = 11/108 (10%)

Query: 48  PACSLQSPSSAGGHPKAHELSESCAGDKSP--PGQA--------SSKRARTAYTSAQLVE 97
           P    +   S G   + +  +ES  GDK P  P           S+++ R  YT  Q +E
Sbjct: 162 PPVDREKQPSEGAFSENNAENES-GGDKPPIDPNNPAANWLHARSTRKKRCPYTKHQTLE 220

Query: 98  LEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKDQKGK 145
           LEKEF FN YL R RR E+A LLNLTERQ+KIWFQNRRMK KK  K +
Sbjct: 221 LEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKINKDR 268



>gi|1709079|sp|P50222|MEOX2_HUMAN   Homeobox protein MOX-2 (Mesenchyme homeobox 2) (Growth
           arrest-specific homeobox)
          Length = 303

 Score = 84.3 bits (207), Expect = 5e-17
 Identities = 47/112 (41%), Positives = 66/112 (58%), Gaps = 1/112 (0%)

Query: 34  PASAALGADGEYHRPACSLQSPSSAGGHPKAHELSESCAGDKSPPGQASSKRARTAYTSA 93
           P  AA  A G+Y R A S        G  +  + S+S  G+      +  ++ RTA+T  
Sbjct: 138 PTGAAC-APGDYGRQALSPAEAEKRSGGKRKSDSSDSQEGNYKSEVNSKPRKERTAFTKE 196

Query: 94  QLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKDQKGK 145
           Q+ ELE EF  + YL R RR E+A  L+LTERQ+K+WFQNRRMK+K+ + G+
Sbjct: 197 QIRELEAEFAHHNYLTRLRRYEIAVNLDLTERQVKVWFQNRRMKWKRVKGGQ 248



>gi|20141506|sp|P17481|HXB8_HUMAN   Homeobox protein Hox-B8 (Hox-2D) (Hox-2.4)
          Length = 243

 Score = 84.0 bits (206), Expect = 7e-17
 Identities = 55/139 (39%), Positives = 69/139 (49%), Gaps = 12/139 (8%)

Query: 4   ATYYDSSAIYGGYPYQAANGF-AYNANQQPYPASAALGADGEYHRPACSLQSPSSAGGHP 62
           A + D    YG  P Q  + F A + +   Y       A G       S QSPS     P
Sbjct: 77  ACHGDPGNFYGYDPLQRQSLFGAQDPDLVQYADCKLAAASGLGEEAEGSEQSPSPTQLFP 136

Query: 63  KAHELSESCAGDKSPPGQASSKRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNL 122
                         P   A  +R R  Y+  Q +ELEKEF FN YL R RR+E+++ L L
Sbjct: 137 WMR-----------PQAAAGRRRGRQTYSRYQTLELEKEFLFNPYLTRKRRIEVSHALGL 185

Query: 123 TERQIKIWFQNRRMKYKKD 141
           TERQ+KIWFQNRRMK+KK+
Sbjct: 186 TERQVKIWFQNRRMKWKKE 204



>gi|2506529|sp|Q07687|DLX2_HUMAN   Homeobox protein DLX-2
          Length = 328

 Score = 82.0 bits (201), Expect = 3e-16
 Identities = 58/157 (36%), Positives = 75/157 (47%), Gaps = 10/157 (6%)

Query: 14  GGYPYQAANGFAYNA---NQQPYPASAA--LGADGEYHRPACSLQSPSSAGGHPKAHELS 68
           GG PY     + Y A   N  PY A ++  LG    Y   A    S S A   P+  +L 
Sbjct: 80  GGSPYAHMGSYQYQASGLNNVPYSAKSSYDLGYTAAYTSYAPYGTSSSPANNEPEKEDLE 139

Query: 69  ESCAGDKSPPGQASSKRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIK 128
                    P +   ++ RT Y+S QL  L++ F   +YL  P R E+A  L LT+ Q+K
Sbjct: 140 PEIRIVNGKPKKV--RKPRTIYSSFQLAALQRRFQKTQYLALPERAELAASLGLTQTQVK 197

Query: 129 IWFQNRRMKYKKDQKGKGMLTSSGGQSPSRSPVPPGA 165
           IWFQNRR K+KK  K  G + S   Q P  S  PP A
Sbjct: 198 IWFQNRRSKFKKMWK-SGEIPSE--QHPGASASPPCA 231



>gi|20141612|sp|Q9NYD6|HXC10_HUMAN   Homeobox protein Hox-C10
          Length = 342

 Score = 81.6 bits (200), Expect = 3e-16
 Identities = 43/100 (43%), Positives = 60/100 (60%), Gaps = 2/100 (2%)

Query: 41  ADGEYHRPACSLQSPSSAGGHPKAHELSESCAGDKSPPGQASSKRARTAYTSAQLVELEK 100
           ++ E  R   +  SP ++    K    +E+  G+       S ++ R  YT  Q +ELEK
Sbjct: 228 SESEKERAKAADSSPDTSDNEAKEEIKAENTTGNWLTA--KSGRKKRCPYTKHQTLELEK 285

Query: 101 EFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKK 140
           EF FN YL R RR+E++  +NLT+RQ+KIWFQNRRMK KK
Sbjct: 286 EFLFNMYLTRERRLEISKTINLTDRQVKIWFQNRRMKLKK 325



>gi|13124744|sp|P31270|HXA11_HUMAN   Homeobox protein Hox-A11 (Hox-1I)
          Length = 313

 Score = 81.3 bits (199), Expect = 4e-16
 Identities = 47/105 (44%), Positives = 66/105 (62%), Gaps = 9/105 (8%)

Query: 36  SAALGADGEYHRPACSLQSPSSAGGHPKAHELSESCAGDKSPPGQASSKRARTAYTSAQL 95
           +AA   + E  R   S  SP S+ GH      +E  AG  S  GQ + K+ R  YT  Q+
Sbjct: 203 TAAAAEEKERRRRPESSSSPESSSGH------TEDKAGGSS--GQRTRKK-RCPYTKYQI 253

Query: 96  VELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKK 140
            ELE+EF F+ Y+ + +R++++ +LNLT+RQ+KIWFQNRRMK KK
Sbjct: 254 RELEREFFFSVYINKEKRLQLSRMLNLTDRQVKIWFQNRRMKEKK 298



>gi|12230077|sp|Q14549|GBX1_HUMAN   Homeobox protein GBX-1 (Gastrulation and brain-specific homeobox
           protein 1)
          Length = 139

 Score = 80.9 bits (198), Expect = 6e-16
 Identities = 46/97 (47%), Positives = 62/97 (63%), Gaps = 5/97 (5%)

Query: 64  AHELSESCAGDKSPPGQASSKRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLT 123
           A E +   AG  +P G+  S+R RTA+TS QL+ELEKEFH  +YL    R ++A+ L L+
Sbjct: 20  AEEGAPVTAGVTAPGGK--SRRRRTAFTSEQLLELEKEFHCKKYLSLTERSQIAHALKLS 77

Query: 124 ERQIKIWFQNRRMKYKKDQKGKGMLTSSGGQSPSRSP 160
           E Q+KIWFQNRR K+K+ + G     SS    P R+P
Sbjct: 78  EVQVKIWFQNRRAKWKRIKAGN---VSSRSGEPVRNP 111



>gi|1709078|sp|P50221|MEOX1_HUMAN   Homeobox protein MOX-1 (Mesenchyme homeobox 1)
          Length = 254

 Score = 80.5 bits (197), Expect = 7e-16
 Identities = 45/117 (38%), Positives = 68/117 (58%), Gaps = 2/117 (1%)

Query: 40  GADGEYHRPACSLQSPSSAGGHPKAHELSESCAGDKSPPGQASSKRARTAYTSAQLVELE 99
           G  G+ +    S  + +      +  E S++      P G + +++ RTA+T  QL ELE
Sbjct: 128 GGPGDDYGVLGSTANETEKKSSRRRKESSDNQENRGKPEGSSKARKERTAFTKEQLRELE 187

Query: 100 KEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKDQKGKGMLTSSGGQSP 156
            EF  + YL R RR E+A  L+L+ERQ+K+WFQNRRMK+K+ + G+ +  S  GQ P
Sbjct: 188 AEFAHHNYLTRLRRYEIAVNLDLSERQVKVWFQNRRMKWKRVKGGQPI--SPNGQDP 242



>gi|12644203|sp|P31277|HXD11_HUMAN   Homeobox protein Hox-D11 (Hox-4F)
          Length = 338

 Score = 80.1 bits (196), Expect = 1e-15
 Identities = 48/114 (42%), Positives = 67/114 (58%), Gaps = 19/114 (16%)

Query: 40  GADGEYHRPACSLQSPSSAGGHPKAHELSESCAGD-KSPPGQAS------------SKRA 86
           GA G    P C+  +P   G  PK    +E   GD + PPG+A             S++ 
Sbjct: 216 GAGGGGGSP-CTKATP---GSEPKG--AAEGSGGDGEGPPGEAGAEKSSSAVAPQRSRKK 269

Query: 87  RTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKK 140
           R  YT  Q+ ELE+EF FN Y+ + +R++++ +LNLT+RQ+KIWFQNRRMK KK
Sbjct: 270 RCPYTKYQIRELEREFFFNVYINKEKRLQLSRMLNLTDRQVKIWFQNRRMKEKK 323



>gi|13124745|sp|P31273|HXC8_HUMAN   Homeobox protein Hox-C8 (Hox-3A)
          Length = 242

 Score = 79.7 bits (195), Expect = 1e-15
 Identities = 52/136 (38%), Positives = 67/136 (49%), Gaps = 14/136 (10%)

Query: 8   DSSAIYG--GYPYQAANGFAYNANQQPYPASAALGADGEYHRPACSLQSPSSAGGHPKAH 65
           D+S  YG    P Q+  G    A+   YP   +            S  + SS G      
Sbjct: 84  DASKFYGYEALPRQSLYGAQQEASVVQYPDCKS------------SANTNSSEGQGHLNQ 131

Query: 66  ELSESCAGDKSPPGQASSKRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTER 125
             S S       P     +  R  Y+  Q +ELEKEF FN YL R RR+E+++ L LTER
Sbjct: 132 NSSPSLMFPWMRPHAPGRRSGRQTYSRYQTLELEKEFLFNPYLTRKRRIEVSHALGLTER 191

Query: 126 QIKIWFQNRRMKYKKD 141
           Q+KIWFQNRRMK+KK+
Sbjct: 192 QVKIWFQNRRMKWKKE 207



>gi|13124737|sp|P13378|HXD8_HUMAN   Homeobox protein Hox-D8 (Hox-4E) (Hox-5.4)
          Length = 290

 Score = 79.7 bits (195), Expect = 1e-15
 Identities = 37/65 (56%), Positives = 47/65 (72%)

Query: 77  PPGQASSKRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRM 136
           P      +R R  Y+  Q +ELEKEF FN YL R RR+E+++ L LTERQ+KIWFQNRRM
Sbjct: 191 PQAAPGRRRGRQTYSRFQTLELEKEFLFNPYLTRKRRIEVSHALALTERQVKIWFQNRRM 250

Query: 137 KYKKD 141
           K+KK+
Sbjct: 251 KWKKE 255



>gi|12644308|sp|P52951|GBX2_HUMAN   Homeobox protein GBX-2 (Gastrulation and brain-specific homeobox
           protein 2)
          Length = 348

 Score = 79.3 bits (194), Expect = 2e-15
 Identities = 43/93 (46%), Positives = 60/93 (64%), Gaps = 5/93 (5%)

Query: 68  SESCAGDKSPPGQASSKRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQI 127
           S   AG  +  G+  ++R RTA+TS QL+ELEKEFH  +YL    R ++A+ L L+E Q+
Sbjct: 234 SSGAAGSTTSTGK--NRRRRTAFTSEQLLELEKEFHCKKYLSLTERSQIAHALKLSEVQV 291

Query: 128 KIWFQNRRMKYKKDQKGKGMLTSSGGQSPSRSP 160
           KIWFQNRR K+K+ + G     +S    PSR+P
Sbjct: 292 KIWFQNRRAKWKRVKAGN---ANSKTGEPSRNP 321



>gi|1345720|sp|P47902|CDX1_HUMAN   Homeobox protein CDX-1 (Caudal-type homeobox protein 1)
          Length = 265

 Score = 78.6 bits (192), Expect = 3e-15
 Identities = 62/167 (37%), Positives = 80/167 (47%), Gaps = 18/167 (10%)

Query: 8   DSSAIYGGYPYQ-----AANGFAYNANQQPYPASAALGADGEYHRPACSLQSPSSAGGH- 61
           D +A YG  P       A+  F    +  P PA    G  G   +P     +PSS G   
Sbjct: 71  DWAAAYGPGPAAPAASPASLAFGPPPDFSPVPAPPGPGP-GLLAQPLGGPGTPSSPGAQR 129

Query: 62  PKAHELSES--CAGDKSPPGQASSK-RARTAYTSAQLVELEKEFHFNRYLCRPRRVEMAN 118
           P  +E       AG     G+  +K + R  YT  Q +ELEKEFH++RY+   R+ E+A 
Sbjct: 130 PTPYEWMRRSVAAGGGGGSGKTRTKDKYRVVYTDHQRLELEKEFHYSRYITIRRKSELAA 189

Query: 119 LLNLTERQIKIWFQNRRMKYKKDQKGKGMLTSSGGQSPSRSPVPPGA 165
            L LTERQ+KIWFQNRR K +K  K K        Q   + P PP A
Sbjct: 190 NLGLTERQVKIWFQNRRAKERKVNKKK--------QQQQQPPQPPMA 228



>gi|3287858|sp|O43248|HXC11_HUMAN   Homeobox protein Hox-C11
          Length = 304

 Score = 78.2 bits (191), Expect = 4e-15
 Identities = 53/144 (36%), Positives = 81/144 (56%), Gaps = 17/144 (11%)

Query: 6   YYDSSAIYGGYPYQ----AANGFAYNANQQPYPAS-----AALGADGEYHRPACSLQSPS 56
           ++D++   GG P      +  G A    + P PAS     A  GA+ E      +   PS
Sbjct: 154 FFDNAYCGGGDPPAEPPCSGKGEAKGEPEAP-PASGLASRAEAGAEAEAEEENTN---PS 209

Query: 57  SAGGHPKAHELSESCAGDKSPPGQASSKRARTAYTSAQLVELEKEFHFNRYLCRPRRVEM 116
           S+G    AH +++  A   +P    + K+ R  Y+  Q+ ELE+EF FN Y+ + +R+++
Sbjct: 210 SSGS---AHSVAKEPAKGAAPNAPRTRKK-RCPYSKFQIRELEREFFFNVYINKEKRLQL 265

Query: 117 ANLLNLTERQIKIWFQNRRMKYKK 140
           + +LNLT+RQ+KIWFQNRRMK KK
Sbjct: 266 SRMLNLTDRQVKIWFQNRRMKEKK 289



>gi|123289|sp|P28358|HXD10_HUMAN   Homeobox protein Hox-D10 (Hox-4D) (Hox-4E)
          Length = 340

 Score = 77.8 bits (190), Expect = 5e-15
 Identities = 36/59 (61%), Positives = 45/59 (76%)

Query: 82  SSKRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKK 140
           S ++ R  YT  Q +ELEKEF FN YL R RR+E++  +NLT+RQ+KIWFQNRRMK KK
Sbjct: 265 SGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISKSVNLTDRQVKIWFQNRRMKLKK 323



>gi|20141282|sp|Q99626|CDX2_HUMAN   Homeobox protein CDX-2 (Caudal-type homeobox protein 2) (CDX-3)
          Length = 313

 Score = 77.8 bits (190), Expect = 5e-15
 Identities = 57/179 (31%), Positives = 80/179 (44%), Gaps = 37/179 (20%)

Query: 20  AANGFAYNANQQPYPASAALGADGEYH--------------RPACS---LQSPSSAGGHP 62
           AAN  A+  N     A+    +  +YH               P+C+   LQ+ +     P
Sbjct: 88  AANAVAHGLNGGSPAAAMGYSSPADYHPHHHPHHHPHHPAAAPSCASGLLQTLNPGPPGP 147

Query: 63  KAHELSES----------CAGDKSPPGQASSKRART--------AYTSAQLVELEKEFHF 104
            A   +E           C   + P  Q+   + +T         YT  Q +ELEKEFH+
Sbjct: 148 AATAAAEQLSPGGQRRNLCEWMRKPAQQSLGSQVKTRTKDKYRVVYTDHQRLELEKEFHY 207

Query: 105 NRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKDQKGKGMLTSSGGQSPSRSPVPP 163
           +RY+   R+ E+A  L L+ERQ+KIWFQNRR K +K  K K  L     Q P + P PP
Sbjct: 208 SRYITIRRKAELAATLGLSERQVKIWFQNRRAKERKINKKK--LQQQQQQQPPQPPPPP 264



>gi|13124743|sp|P31260|HXA10_HUMAN   Homeobox protein Hox-A10 (Hox-1H) (Hox-1.8) (PL)
          Length = 393

 Score = 77.4 bits (189), Expect = 6e-15
 Identities = 47/125 (37%), Positives = 64/125 (51%), Gaps = 12/125 (9%)

Query: 28  ANQQPYPASAALGADG------EYHRPACSLQSPSSAGGHPKAHELSESCAGDKSPPGQA 81
           A   P P + A G+ G      E H  + + +  S A          +   G+      A
Sbjct: 252 ALDSPPPPTLACGSGGGSQGDEEAHASSSAAEELSPAPSESSKASPEKDSLGNSKGENAA 311

Query: 82  ------SSKRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRR 135
                 S ++ R  YT  Q +ELEKEF FN YL R RR+E++  ++LT+RQ+KIWFQNRR
Sbjct: 312 NWLTAKSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISRSVHLTDRQVKIWFQNRR 371

Query: 136 MKYKK 140
           MK KK
Sbjct: 372 MKLKK 376



>gi|6016210|sp|P78367|NK32_HUMAN   Homeobox protein Nkx-3.2 (Bagpipe homeobox protein homolog 1)
          Length = 333

 Score = 75.1 bits (183), Expect = 3e-14
 Identities = 44/125 (35%), Positives = 61/125 (48%), Gaps = 5/125 (4%)

Query: 27  NANQQPYPASAALGADGEYHRPACSLQSPSSAGGHPKAHELSESCAGDKSPPGQASSKRA 86
           + ++ P      +G  G +    CS        G     E  E  A  K        KR+
Sbjct: 155 SGDRSPRTEDDGVGPRGAHVSALCSGAGGGGGSGPAGVAEEEEEPAAPKP-----RKKRS 209

Query: 87  RTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKDQKGKG 146
           R A++ AQ+ ELE+ F+  RYL  P R ++A  L LTE Q+KIWFQNRR K K+ Q    
Sbjct: 210 RAAFSHAQVFELERRFNHQRYLSGPERADLAASLKLTETQVKIWFQNRRYKTKRRQMAAD 269

Query: 147 MLTSS 151
           +L S+
Sbjct: 270 LLASA 274



>gi|13431329|sp|Q9UMQ3|BARX2_HUMAN   Homeobox protein BarH-like 2
          Length = 254

 Score = 74.7 bits (182), Expect = 4e-14
 Identities = 40/105 (38%), Positives = 62/105 (59%), Gaps = 9/105 (8%)

Query: 54  SPSSAGGHPKAHELSESCAGDKSPPGQASSKRARTAYTSAQLVELEKEFHFNRYLCRPRR 113
           S  + GG   A   SE+   ++  P Q   +R+RT +T  QL+ LEK+F   +YL  P R
Sbjct: 82  SAEAPGGEALASSESET---EQPTPRQKKPRRSRTIFTELQLMGLEKKFQKQKYLSTPDR 138

Query: 114 VEMANLLNLTERQIKIWFQNRRMKYKKDQKGKGMLTSSGGQSPSR 158
           +++A  L LT+ Q+K W+QNRRMK+KK      M+   G ++P++
Sbjct: 139 LDLAQSLGLTQLQVKTWYQNRRMKWKK------MVLKGGQEAPTK 177



>gi|38605720|sp|P56177|DLX1_HUMAN   Homeobox protein DLX-1
          Length = 255

 Score = 73.9 bits (180), Expect = 7e-14
 Identities = 56/160 (35%), Positives = 73/160 (45%), Gaps = 22/160 (13%)

Query: 15  GYPY----QAANGFAYNANQQPYPASAALGADGEYHRPACSLQSPSSAGGHPKAHELSES 70
           GYPY     +     Y ++ Q YP SA+L         A S +S    GG     E+  +
Sbjct: 68  GYPYVNSVSSHASSPYISSVQSYPGSASLAQSRLEDPGADSEKSTVVEGG-----EVRFN 122

Query: 71  CAGDKSPPGQASSKRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIW 130
             G K        ++ RT Y S QL  L + F   +YL  P R E+A  L LT+ Q+KIW
Sbjct: 123 GKGKKI-------RKPRTIYCSLQLQALNRRFQQTQYLALPERAELAASLGLTQTQVKIW 175

Query: 131 FQNRRMKYKKDQKGKG------MLTSSGGQSPSRSPVPPG 164
           FQN+R K+KK  K  G       L +    S    PVPPG
Sbjct: 176 FQNKRSKFKKLMKQGGAALEGSALANGRALSAGSPPVPPG 215



>gi|12231013|sp|Q03828|EVX2_HUMAN   Homeobox even-skipped homolog protein 2 (EVX-2)
          Length = 476

 Score = 73.6 bits (179), Expect = 9e-14
 Identities = 41/98 (41%), Positives = 53/98 (54%), Gaps = 4/98 (4%)

Query: 49  ACSLQSPSSAGGHPKAHELSESCAGDKSPPGQASS----KRARTAYTSAQLVELEKEFHF 104
           A    + +S  G    H  S    G  +  G  S     +R RTA+T  Q+  LEKEF+ 
Sbjct: 150 AAGTTTSASGSGLGSLHGGSGGSGGSAALGGSGSGADQVRRYRTAFTREQIARLEKEFYR 209

Query: 105 NRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKDQ 142
             Y+ RPRR E+A  LNL E  IK+WFQNRRMK K+ +
Sbjct: 210 ENYVSRPRRCELAAALNLPETTIKVWFQNRRMKDKRQR 247



>gi|1352398|sp|P49640|EVX1_HUMAN   Homeobox even-skipped homolog protein 1 (EVX-1)
          Length = 407

 Score = 73.2 bits (178), Expect = 1e-13
 Identities = 42/110 (38%), Positives = 56/110 (50%), Gaps = 5/110 (4%)

Query: 33  YPASAALGADGEYHRPACSLQSPSSAGGHPKAHELSESCAGDKSPPGQASSKRARTAYTS 92
           Y  S   G++     P    ++P S GG            G  +       +R RTA+T 
Sbjct: 138 YQHSKGSGSEALVGSPNGGSETPKSNGGSGGG-----GSQGTLACSASDQMRRYRTAFTR 192

Query: 93  AQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKDQ 142
            Q+  LEKEF+   Y+ RPRR E+A  LNL E  IK+WFQNRRMK K+ +
Sbjct: 193 EQIARLEKEFYRENYVSRPRRCELAAALNLPETTIKVWFQNRRMKDKRQR 242



>gi|3024482|sp|P78337|PITX1_HUMAN   Pituitary homeobox 1 (Hindlimb expressed homeobox protein backfoot)
          Length = 314

 Score = 73.2 bits (178), Expect = 1e-13
 Identities = 41/105 (39%), Positives = 57/105 (54%), Gaps = 4/105 (3%)

Query: 59  GGHPKAHELSES----CAGDKSPPGQASSKRARTAYTSAQLVELEKEFHFNRYLCRPRRV 114
           GG PK  E S +    C G   P  +   +R RT +TS QL ELE  F  NRY     R 
Sbjct: 61  GGEPKGPEDSGAGGTGCGGADDPAKKKKQRRQRTHFTSQQLQELEATFQRNRYPDMSMRE 120

Query: 115 EMANLLNLTERQIKIWFQNRRMKYKKDQKGKGMLTSSGGQSPSRS 159
           E+A   NLTE ++++WF+NRR K++K ++ + +    GG  P  S
Sbjct: 121 EIAVWTNLTEPRVRVWFKNRRAKWRKRERNQQLDLCKGGYVPQFS 165



>gi|3023467|sp|O14627|CDX4_HUMAN   Homeobox protein CDX-4 (Caudal-type homeobox protein 4)
          Length = 284

 Score = 72.4 bits (176), Expect = 2e-13
 Identities = 41/85 (48%), Positives = 53/85 (62%), Gaps = 2/85 (2%)

Query: 82  SSKRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKD 141
           + ++ R  YT  Q +ELEKEFH NRY+   R+ E+A  L L+ERQ+KIWFQNRR K +K 
Sbjct: 172 TKEKYRVVYTDHQRLELEKEFHCNRYITIQRKSELAVNLGLSERQVKIWFQNRRAKERKM 231

Query: 142 QKGK-GMLTSSGGQSPSRS-PVPPG 164
            K K     +SGG   S S  + PG
Sbjct: 232 IKKKISQFENSGGSVQSDSDSISPG 256



>gi|6016205|sp|O95096|NKX22_HUMAN   Homeobox protein Nkx-2.2 (Homeobox protein NK-2 homolog B)
          Length = 273

 Score = 72.0 bits (175), Expect = 3e-13
 Identities = 49/145 (33%), Positives = 69/145 (47%), Gaps = 12/145 (8%)

Query: 26  YNANQQPYPASAALGADGEYHRPACSLQSP----SSAGGHPKAHELSESCAGDKSPPG-- 79
           Y+++  PY    A     +Y     +  +P    SS    P A E  ++   DK  PG  
Sbjct: 66  YDSSDNPYTRWLASTEGLQYSLHGLAAGAPPQDSSSKSPEPSADESPDN---DKETPGGG 122

Query: 80  --QASSKRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMK 137
                 ++ R  ++ AQ  ELE+ F   RYL  P R  +A+L+ LT  Q+KIWFQN R K
Sbjct: 123 GDAGKKRKRRVLFSKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNHRYK 182

Query: 138 YKKDQKGKGMLTSSGGQSPSRSPVP 162
            K+ +  KGM  +    SP R  VP
Sbjct: 183 MKRARAEKGMEVTP-LPSPRRVAVP 206



>gi|27923815|sp|Q8TAU0|NKX23_HUMAN   Homeobox protein Nkx-2.3 (Homeobox protein NKX-2.3) (Homeobox
           protein NK-2 homolog C)
          Length = 364

 Score = 71.6 bits (174), Expect = 3e-13
 Identities = 43/115 (37%), Positives = 59/115 (51%), Gaps = 12/115 (10%)

Query: 49  ACSLQSPSSAGGHPKAHELSESCAGDKSPPGQASSKRARTAYTSAQLVELEKEFHFNRYL 108
           +C L+      G  KA E SE        P   S ++ R  ++ AQ+ ELE+ F   RYL
Sbjct: 121 SCQLKKSLETAGDCKAAEESER-------PKPRSRRKPRVLFSQAQVFELERRFKQQRYL 173

Query: 109 CRPRRVEMANLLNLTERQIKIWFQNRRMKYKKDQKGKGMLTSSGGQSPSRSPVPP 163
             P R  +A+ L LT  Q+KIWFQNRR K K+ ++ K +    G  +P   P PP
Sbjct: 174 SAPEREHLASSLKLTSTQVKIWFQNRRYKCKRQRQDKSL--ELGAHAP---PPPP 223



>gi|17377578|sp|Q99801|NKX31_HUMAN   Homeobox protein Nkx-3.1
          Length = 234

 Score = 71.2 bits (173), Expect = 5e-13
 Identities = 45/131 (34%), Positives = 65/131 (49%), Gaps = 16/131 (12%)

Query: 32  PYPASAALGADGEYHRPACSLQSPSSAGGHPKAHELSESCAGDKSPPGQASSKRARTAYT 91
           P  A      + E H  +  L S +++G  P+  +        K P      KR+R A++
Sbjct: 84  PEEAETLAETEPERHLGSYLLDSENTSGALPRLPQTP------KQP-----QKRSRAAFS 132

Query: 92  SAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKDQKGKGMLTSS 151
             Q++ELE++F   +YL  P R  +A  L LTE Q+KIWFQNRR K K+ Q     L+S 
Sbjct: 133 HTQVIELERKFSHQKYLSAPERAHLAKNLKLTETQVKIWFQNRRYKTKRKQ-----LSSE 187

Query: 152 GGQSPSRSPVP 162
            G     S +P
Sbjct: 188 LGDLEKHSSLP 198



>gi|12644329|sp|P56178|DLX5_HUMAN   Homeobox protein DLX-5
          Length = 289

 Score = 71.2 bits (173), Expect = 5e-13
 Identities = 51/158 (32%), Positives = 68/158 (43%), Gaps = 18/158 (11%)

Query: 9   SSAIYGG------YPYQAANGFAYNANQQPYPASAALGADGEYHRPACSLQSPSSAGGHP 62
           +SA YG       Y Y   NG   +A   P  A A       YH+   +     SA   P
Sbjct: 62  TSASYGKALNPYQYQYHGVNG---SAGSYPAKAYADYSYASSYHQYGGAYNRVPSATNQP 118

Query: 63  KAHELSESCAGDKSPPGQASSKRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNL 122
           +              P +   ++ RT Y+S QL  L++ F   +YL  P R E+A  L L
Sbjct: 119 EKEVTEPEVRMVNGKPKKV--RKPRTIYSSFQLAALQRRFQKTQYLALPERAELAASLGL 176

Query: 123 TERQIKIWFQNRRMKYKKDQKGKGMLTSSGGQSPSRSP 160
           T+ Q+KIWFQN+R K KK  K       +G   P  SP
Sbjct: 177 TQTQVKIWFQNKRSKIKKIMK-------NGEMPPEHSP 207



>gi|3913487|sp|O60479|DLX3_HUMAN   Homeobox protein DLX-3
          Length = 287

 Score = 70.9 bits (172), Expect = 6e-13
 Identities = 57/179 (31%), Positives = 77/179 (43%), Gaps = 24/179 (13%)

Query: 13  YGGYPY-QAANGFAYN--------------ANQQPYPASAALGADGEYHRPACSLQSPSS 57
           Y G PY Q  N + Y+              + +  Y   A+    G Y       Q P S
Sbjct: 51  YSGQPYGQTVNPYTYHHQFNLNGLAGTGAYSPKSEYTYGASYRQYGAYREQPLPAQDPVS 110

Query: 58  AGGHPKAHELSESCAGDKSPPGQASSKRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMA 117
               P+A     +    K        ++ RT Y+S QL  L++ F   +YL  P R E+A
Sbjct: 111 VKEEPEAEVRMVNGKPKKV-------RKPRTIYSSYQLAALQRRFQKAQYLALPERAELA 163

Query: 118 NLLNLTERQIKIWFQNRRMKYKKDQK-GKGMLTSSGGQSPSRS-PVPPGAGGYLNSMHS 174
             L LT+ Q+KIWFQNRR K+KK  K G+  L  S   S S +   PP    +  S HS
Sbjct: 164 AQLGLTQTQVKIWFQNRRSKFKKLYKNGEVPLEHSPNNSDSMACNSPPSPALWDTSSHS 222



>gi|20141538|sp|P31275|HXC12_HUMAN   Homeobox protein Hox-C12 (Hox-3F)
          Length = 282

 Score = 70.9 bits (172), Expect = 6e-13
 Identities = 39/90 (43%), Positives = 55/90 (61%), Gaps = 7/90 (7%)

Query: 51  SLQSPSSAGGHPKAHELSESCAGDKSPPGQASSKRARTAYTSAQLVELEKEFHFNRYLCR 110
           SL SP + GG         S +G    P  + S++ R  Y+  QL ELE EF  N ++ R
Sbjct: 189 SLVSPLNPGG-------GLSASGAPWYPINSRSRKKRKPYSKLQLAELEGEFLVNEFITR 241

Query: 111 PRRVEMANLLNLTERQIKIWFQNRRMKYKK 140
            RR E+++ LNL+++Q+KIWFQNRRMK K+
Sbjct: 242 QRRRELSDRLNLSDQQVKIWFQNRRMKKKR 271



>gi|1708211|sp|P52952|NK25_HUMAN   Homeobox protein Nkx-2.5 (Homeobox protein NK-2 homolog E)
           (Cardiac-specific homeobox) (Homeobox protein CSX)
          Length = 324

 Score = 69.7 bits (169), Expect = 1e-12
 Identities = 44/126 (34%), Positives = 63/126 (50%), Gaps = 13/126 (10%)

Query: 18  YQAANGFAYNANQQPYPASAALGADGEYHRPACSLQSPSSAGGHPKAHELSESCAGDKSP 77
           + AA  F   A   P PA        E     C+LQ         KA EL ++ A +   
Sbjct: 86  FPAAPAFYPRAYSDPDPAKDPRAEKKEL----CALQ---------KAVELEKTEADNAER 132

Query: 78  PGQASSKRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMK 137
           P     ++ R  ++ AQ+ ELE+ F   RYL  P R ++A++L LT  Q+KIWFQNRR K
Sbjct: 133 PRARRRRKPRVLFSQAQVYELERRFKQQRYLSAPERDQLASVLKLTSTQVKIWFQNRRYK 192

Query: 138 YKKDQK 143
            K+ ++
Sbjct: 193 CKRQRQ 198



>gi|12644227|sp|P35452|HXD12_HUMAN   Homeobox protein Hox-D12 (Hox-4H)
          Length = 275

 Score = 69.7 bits (169), Expect = 1e-12
 Identities = 33/63 (52%), Positives = 45/63 (71%), Gaps = 2/63 (3%)

Query: 78  PGQASSKRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMK 137
           PG+A  KR    YT  Q+ ELE EF  N ++ R +R E++N LNL+++Q+KIWFQNRRMK
Sbjct: 204 PGEARKKRK--PYTKQQIAELENEFLVNEFINRQKRKELSNRLNLSDQQVKIWFQNRRMK 261

Query: 138 YKK 140
            K+
Sbjct: 262 KKR 264



>gi|14194481|sp|Q9HBU1|BARX1_HUMAN   Homeobox protein BarH-like 1
          Length = 225

 Score = 69.3 bits (168), Expect = 2e-12
 Identities = 40/109 (36%), Positives = 61/109 (55%), Gaps = 10/109 (9%)

Query: 55  PSSAGGHPKAHELSESCAGDKSPPGQASSK-----RARTAYTSAQLVELEKEFHFNRYLC 109
           P +AG      EL      + + PG+  +K     R+RT +T  QL+ LEK F   +YL 
Sbjct: 80  PGAAGAPHLPLELHVRGKLEAAGPGEPGTKAKKGRRSRTVFTELQLMGLEKRFEKQKYLS 139

Query: 110 RPRRVEMANLLNLTERQIKIWFQNRRMKYKKDQKGKGMLTSSGGQSPSR 158
            P R+++A  L L++ Q+K W+QNRRMK+KK      +L   G +SP++
Sbjct: 140 TPDRIDLAESLGLSQLQVKTWYQNRRMKWKKI-----VLQGGGLESPTK 183



>gi|20532295|sp|Q9UIW0|VAX2_HUMAN   Ventral anterior homeobox 2
          Length = 290

 Score = 68.2 bits (165), Expect = 4e-12
 Identities = 32/59 (54%), Positives = 41/59 (69%)

Query: 84  KRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKDQ 142
           KR RT++T+ QL  LE EF   +Y+    R E+A  LNL+E Q+K+WFQNRR K KKDQ
Sbjct: 103 KRTRTSFTAEQLYRLEMEFQRCQYVVGRERTELARQLNLSETQVKVWFQNRRTKQKKDQ 161



>gi|21903415|sp|P19622|HME2_HUMAN   Homeobox protein engrailed-2 (Hu-En-2)
          Length = 333

 Score = 67.8 bits (164), Expect = 5e-12
 Identities = 35/65 (53%), Positives = 41/65 (63%)

Query: 84  KRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKDQK 143
           KR RTA+T+ QL  L+ EF  NRYL   RR  +A  L+L E QIKIWFQN+R K KK   
Sbjct: 245 KRPRTAFTAEQLQRLKAEFQTNRYLTEQRRQSLAQELSLNESQIKIWFQNKRAKIKKATG 304

Query: 144 GKGML 148
            K  L
Sbjct: 305 NKNTL 309



>gi|29336920|sp|Q9BZE3|BARH1_HUMAN   BarH-like 1 homeobox protein (FKSG31 protein)
          Length = 327

 Score = 67.4 bits (163), Expect = 7e-12
 Identities = 36/94 (38%), Positives = 53/94 (56%), Gaps = 1/94 (1%)

Query: 70  SCAGDKSPPGQASSKRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKI 129
           S + D  P      ++ARTA+T  QL +LE+ F   +YL    R+E+A  LNLT+ Q+K 
Sbjct: 165 SSSRDSPPVRLKKPRKARTAFTDHQLAQLERSFERQKYLSVQDRMELAASLNLTDTQVKT 224

Query: 130 WFQNRRMKYKKDQK-GKGMLTSSGGQSPSRSPVP 162
           W+QNRR K+K+    G  +L  +G  S  +   P
Sbjct: 225 WYQNRRTKWKRQTAVGLELLAEAGNYSALQRMFP 258



>gi|27923817|sp|Q9H2Z4|NK24_HUMAN   Homeobox protein Nkx-2.4 (Homeobox protein NKX2.4) (Homeobox
           protein NK-2 homolog D)
          Length = 353

 Score = 67.4 bits (163), Expect = 7e-12
 Identities = 33/84 (39%), Positives = 47/84 (55%), Gaps = 2/84 (2%)

Query: 81  ASSKRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKK 140
           A  ++ R  ++ AQ+ ELE+ F   +YL  P R  +A++++LT  Q+KIWFQN R K K+
Sbjct: 187 APRRKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKR 246

Query: 141 DQKGKG--MLTSSGGQSPSRSPVP 162
             K K    L   GG  P   P P
Sbjct: 247 QAKDKAAQQLQQEGGLGPPPPPPP 270



>gi|14917010|sp|Q05925|HME1_HUMAN   Homeobox protein engrailed-1 (Hu-En-1)
          Length = 392

 Score = 67.0 bits (162), Expect = 8e-12
 Identities = 33/66 (50%), Positives = 41/66 (62%)

Query: 75  KSPPGQASSKRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNR 134
           K    +   KR RTA+T+ QL  L+ EF  NRY+   RR  +A  L+L E QIKIWFQN+
Sbjct: 295 KKKKNEKEDKRPRTAFTAEQLQRLKAEFQANRYITEQRRQTLAQELSLNESQIKIWFQNK 354

Query: 135 RMKYKK 140
           R K KK
Sbjct: 355 RAKIKK 360



>gi|6016208|sp|O15522|NK28_HUMAN   Homeobox protein Nkx-2.8 (Homeobox protein NK-2 homolog H)
          Length = 239

 Score = 67.0 bits (162), Expect = 8e-12
 Identities = 41/113 (36%), Positives = 60/113 (53%), Gaps = 10/113 (8%)

Query: 31  QPYPASAALGADGEYHRPA--CSLQ-SPSSAGGHPKAHELSESCAGDKSPPGQASSKRAR 87
           QP P +A L ++  ++  +   SL+ SP  +   P A   S     +K        K+ R
Sbjct: 36  QPDPCAAWLDSERGHYPSSDESSLETSPPDSSQRPSARPASPGSDAEKR-------KKRR 88

Query: 88  TAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKK 140
             ++ AQ +ELE+ F   RYL  P R ++A+LL LT  Q+KIWFQN R K K+
Sbjct: 89  VLFSKAQTLELERRFRQQRYLSAPEREQLASLLRLTPTQVKIWFQNHRYKLKR 141



>gi|3915680|sp|Q92988|DLX4_HUMAN   Homeobox protein DLX-4 (DLX-7) (DLX-8)
          Length = 347

 Score = 66.2 bits (160), Expect = 1e-11
 Identities = 35/82 (42%), Positives = 47/82 (57%), Gaps = 2/82 (2%)

Query: 84  KRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKK--D 141
           ++ RT Y+S QL  L + F   +YL  P R ++A  L LT+ Q+KIWFQN+R KYKK   
Sbjct: 226 RKPRTIYSSLQLQHLNQRFQHTQYLALPERAQLAAQLGLTQTQVKIWFQNKRSKYKKLLK 285

Query: 142 QKGKGMLTSSGGQSPSRSPVPP 163
           Q   G      G++ S SP  P
Sbjct: 286 QNSGGQEGDFPGRTFSVSPCSP 307



>gi|1174819|sp|P43699|TITF1_HUMAN   Thyroid transcription factor 1 (Thyroid nuclear factor 1) (TTF-1)
           (Homeobox protein Nkx-2.1) (Homeobox protein NK-2
           homolog A)
          Length = 371

 Score = 65.9 bits (159), Expect = 2e-11
 Identities = 41/121 (33%), Positives = 63/121 (52%), Gaps = 12/121 (9%)

Query: 26  YNANQQP-YPASAALGADGEYHRPACSLQSPSSAGGHPKAHELSESCAGDKSPPGQASSK 84
           Y AN  P +PA +       +  PA  +   S  GG     ++S++ A    P   A  +
Sbjct: 114 YGANPDPRFPAIS------RFMGPASGMNM-SGMGGLGSLGDVSKNMA----PLPSAPRR 162

Query: 85  RARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKDQKG 144
           + R  ++ AQ+ ELE+ F   +YL  P R  +A++++LT  Q+KIWFQN R K K+  K 
Sbjct: 163 KRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQAKD 222

Query: 145 K 145
           K
Sbjct: 223 K 223



>gi|6093723|sp|O75364|PITX3_HUMAN   Pituitary homeobox 3 (Homeobox protein PITX3)
          Length = 302

 Score = 65.5 bits (158), Expect = 2e-11
 Identities = 50/146 (34%), Positives = 68/146 (46%), Gaps = 24/146 (16%)

Query: 41  ADGEYHRPACSLQSPSSAGGHP-------KAHELSESCAGDKSPPG--------QASSKR 85
           ++ E   PA SL    +   HP       K  E S+S     S PG        +   +R
Sbjct: 7   SEAEARSPALSLSDAGTP--HPQLPEHGCKGQEHSDSEKASASLPGGSPEDGSLKKKQRR 64

Query: 86  ARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKDQKG- 144
            RT +TS QL ELE  F  NRY     R E+A   NLTE ++++WF+NRR K++K ++  
Sbjct: 65  QRTHFTSQQLQELEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRKRERSQ 124

Query: 145 -----KGMLTSS-GGQSPSRSPVPPG 164
                KG   +  GG  P    V PG
Sbjct: 125 QAELCKGSFAAPLGGLVPPYEEVYPG 150



>gi|47117915|sp|Q9NY43|BARH2_HUMAN   BarH-like 2 homeobox protein
          Length = 387

 Score = 65.5 bits (158), Expect = 2e-11
 Identities = 37/96 (38%), Positives = 56/96 (58%), Gaps = 2/96 (2%)

Query: 69  ESCAGDKSPPGQASSKR-ARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQI 127
           E  +  +SPP +A   R ARTA++  QL +LE+ F   +YL    R+++A  LNLT+ Q+
Sbjct: 217 EITSSRESPPVRAKKPRKARTAFSDHQLNQLERSFERQKYLSVQDRMDLAAALNLTDTQV 276

Query: 128 KIWFQNRRMKYKKDQK-GKGMLTSSGGQSPSRSPVP 162
           K W+QNRR K+K+    G  +L  +G  S  +   P
Sbjct: 277 KTWYQNRRTKWKRQTAVGLELLAEAGNYSALQRMFP 312



>gi|6174907|sp|Q99697|PITX2_HUMAN   Pituitary homeobox 2 (RIEG bicoid-related homeobox transcription
           factor) (Solurshin) (ALL1 responsive protein ARP1)
          Length = 317

 Score = 65.1 bits (157), Expect = 3e-11
 Identities = 37/102 (36%), Positives = 54/102 (52%), Gaps = 6/102 (5%)

Query: 61  HPKAHELSESCAGD------KSPPGQASSKRARTAYTSAQLVELEKEFHFNRYLCRPRRV 114
           HP A+E  +S  G       + P  +   +R RT +TS QL ELE  F  NRY     R 
Sbjct: 57  HPGANEKDKSQQGKNEDVGAEDPSKKKRQRRQRTHFTSQQLQELEATFQRNRYPDMSTRE 116

Query: 115 EMANLLNLTERQIKIWFQNRRMKYKKDQKGKGMLTSSGGQSP 156
           E+A   NLTE ++++WF+NRR K++K ++ +       G  P
Sbjct: 117 EIAVWTNLTEARVRVWFKNRRAKWRKRERNQQAELCKNGFGP 158



>gi|57015304|sp|Q04741|EMX1_HUMAN   Homeobox protein EMX1 (Empty spiracles homolog 1) (Empty
           spiracles-like protein 1)
          Length = 257

 Score = 65.1 bits (157), Expect = 3e-11
 Identities = 29/65 (44%), Positives = 43/65 (66%)

Query: 78  PGQASSKRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMK 137
           P     KR RTA++ +QL+ LE+ F  N Y+    R ++A  L+L+E Q+K+WFQNRR K
Sbjct: 154 PFARKPKRIRTAFSPSQLLRLERAFEKNHYVVGAERKQLAGSLSLSETQVKVWFQNRRTK 213

Query: 138 YKKDQ 142
           YK+ +
Sbjct: 214 YKRQK 218



>gi|50403792|sp|Q92826|HXB13_HUMAN   Homeobox protein Hox-B13
          Length = 284

 Score = 64.7 bits (156), Expect = 4e-11
 Identities = 48/154 (31%), Positives = 70/154 (45%), Gaps = 32/154 (20%)

Query: 11  AIYGGYPYQAANGFAYNANQQPYPASAALGADGEYHR----PACSLQSPSSAGGHPKAHE 66
           A Y GYP      +   A+         LGA GE       P  S QS + AGG      
Sbjct: 128 AFYPGYP----GTYQPMASYLDVSVVQTLGAPGEPRHDSLLPVDSYQSWALAGGWNS--- 180

Query: 67  LSESCAGDKSPPGQ--------------------ASSKRARTAYTSAQLVELEKEFHFNR 106
               C G+++PPG                        ++ R  Y+  QL ELE+E+  N+
Sbjct: 181 -QMCCQGEQNPPGPFWKAAFADSSGQHPPDACAFRRGRKKRIPYSKGQLRELEREYAANK 239

Query: 107 YLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKK 140
           ++ + +R +++   +L+ERQI IWFQNRR+K KK
Sbjct: 240 FITKDKRRKISAATSLSERQITIWFQNRRVKEKK 273



>gi|13959687|sp|P35548|MSX2_HUMAN   Homeobox protein MSX-2 (Hox-8)
          Length = 267

 Score = 64.7 bits (156), Expect = 4e-11
 Identities = 33/84 (39%), Positives = 51/84 (60%), Gaps = 4/84 (4%)

Query: 62  PKAHELSESCAGDKSPPGQASSKRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLN 121
           P  H    +C   K      ++++ RT +T++QL+ LE++F   +YL    R E ++ LN
Sbjct: 125 PPRHTSPTTCTLRK----HKTNRKPRTPFTTSQLLALERKFRQKQYLSIAERAEFSSSLN 180

Query: 122 LTERQIKIWFQNRRMKYKKDQKGK 145
           LTE Q+KIWFQNRR K K+ Q+ +
Sbjct: 181 LTETQVKIWFQNRRAKAKRLQEAE 204



>gi|399982|sp|P31314|TLX1_HUMAN   T-cell leukemia homeobox protein 1 (Homeobox protein Hox-11) (TCL-3
           proto-oncogene)
          Length = 330

 Score = 64.3 bits (155), Expect = 6e-11
 Identities = 28/67 (41%), Positives = 43/67 (64%), Gaps = 3/67 (4%)

Query: 74  DKSPPGQASSKRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQN 133
           +++PP     K+ RT++T  Q+ ELEK FH  +YL    R  +A  L +T+ Q+K WFQN
Sbjct: 195 NRTPP---KKKKPRTSFTRLQICELEKRFHRQKYLASAERAALAKALKMTDAQVKTWFQN 251

Query: 134 RRMKYKK 140
           RR K+++
Sbjct: 252 RRTKWRR 258



>gi|19862512|sp|Q04743|EMX2_HUMAN   Homeobox protein EMX2 (Empty spiracles homolog 2) (Empty
           spiracles-like protein 2)
          Length = 252

 Score = 63.9 bits (154), Expect = 7e-11
 Identities = 28/59 (47%), Positives = 42/59 (71%)

Query: 84  KRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKDQ 142
           KR RTA++ +QL+ LE  F  N Y+    R ++A+ L+LTE Q+K+WFQNRR K+K+ +
Sbjct: 155 KRIRTAFSPSQLLRLEHAFEKNHYVVGAERKQLAHSLSLTETQVKVWFQNRRTKFKRQK 213



>gi|23503066|sp|P28360|MSX1_HUMAN   Homeobox protein MSX-1 (Hox-7)
          Length = 297

 Score = 63.9 bits (154), Expect = 7e-11
 Identities = 32/75 (42%), Positives = 49/75 (65%), Gaps = 5/75 (6%)

Query: 76  SPPG-----QASSKRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIW 130
           SPP        ++++ RT +T+AQL+ LE++F   +YL    R E ++ L+LTE Q+KIW
Sbjct: 154 SPPACTLRKHKTNRKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIW 213

Query: 131 FQNRRMKYKKDQKGK 145
           FQNRR K K+ Q+ +
Sbjct: 214 FQNRRAKAKRLQEAE 228



>gi|12644330|sp|P56179|DLX6_HUMAN   Homeobox protein DLX-6
          Length = 175

 Score = 62.8 bits (151), Expect = 2e-10
 Identities = 34/86 (39%), Positives = 45/86 (52%), Gaps = 6/86 (6%)

Query: 84  KRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKK--- 140
           ++ RT Y+S QL  L   F   +YL  P R E+A  L LT+ Q+KIWFQN+R K+KK   
Sbjct: 50  RKPRTIYSSLQLQALNHRFQQTQYLALPERAELAASLGLTQTQVKIWFQNKRSKFKKLLK 109

Query: 141 ---DQKGKGMLTSSGGQSPSRSPVPP 163
              +      L  S   SP    +PP
Sbjct: 110 QGSNPHESDPLQGSAALSPRSPALPP 135



>gi|2828197|sp|P31271|HXA13_HUMAN   Homeobox protein Hox-A13 (Hox-1J)
          Length = 388

 Score = 62.8 bits (151), Expect = 2e-10
 Identities = 31/69 (44%), Positives = 45/69 (65%), Gaps = 4/69 (5%)

Query: 76  SPPGQASS----KRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWF 131
           S P  ASS    ++ R  YT  QL ELE+E+  N+++ + +R  ++   NL+ERQ+ IWF
Sbjct: 311 SHPSDASSYRRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWF 370

Query: 132 QNRRMKYKK 140
           QNRR+K KK
Sbjct: 371 QNRRVKEKK 379



>gi|23831508|sp|O43711|TLX3_HUMAN   T-cell leukemia homeobox protein 3 (Homeobox protein Hox-11L2)
          Length = 291

 Score = 62.8 bits (151), Expect = 2e-10
 Identities = 31/85 (36%), Positives = 50/85 (58%), Gaps = 6/85 (7%)

Query: 74  DKSPPGQASSKRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQN 133
           +++PP +   K+ RT+++  Q+ ELEK FH  +YL    R  +A  L +T+ Q+K WFQN
Sbjct: 160 NRTPPKR---KKPRTSFSRVQICELEKRFHRQKYLASAERAALAKSLKMTDAQVKTWFQN 216

Query: 134 RRMKYKKDQKGKGMLTSSGGQSPSR 158
           RR K+++    +     + GQ  SR
Sbjct: 217 RRTKWRRQTAEE---READGQQASR 238



>gi|6016211|sp|P78426|NK61_HUMAN   Homeobox protein Nkx-6.1
          Length = 367

 Score = 62.4 bits (150), Expect = 2e-10
 Identities = 39/119 (32%), Positives = 53/119 (44%), Gaps = 16/119 (13%)

Query: 34  PASAALGADGEYHRPACSL------------QSPSSAGGHPKAHELSESCAGDKSPPGQA 81
           P++AA+ A G Y +P   L            QSP              S   DK      
Sbjct: 179 PSAAAVAAVGRYPKPLAELPGRTPIFWPGVMQSPPWRDARLACTPHQGSILLDKD----G 234

Query: 82  SSKRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKK 140
             K  R  ++  Q+  LEK F   +YL  P R  +A  L +TE Q+K+WFQNRR K++K
Sbjct: 235 KRKHTRPTFSGQQIFALEKTFEQTKYLAGPERARLAYSLGMTESQVKVWFQNRRTKWRK 293



>gi|8134640|sp|O14813|PHX2A_HUMAN   Paired mesoderm homeobox protein 2A (Paired-like homeobox 2A)
           (Aristaless homeobox protein homolog) (ARIX1 homeodomain
           protein)
          Length = 284

 Score = 61.6 bits (148), Expect = 4e-10
 Identities = 51/159 (32%), Positives = 76/159 (47%), Gaps = 22/159 (13%)

Query: 1   MQKATYYDSSAIY--GGYPYQAANGFAYNANQQPYPA----SAALGADGEYHRPACSLQS 54
           M+ + Y D  A    GG+ Y      A+ A   P PA    + ALGA  + H+PA     
Sbjct: 16  MEASAYGDFGACSQPGGFQYSPLRP-AFPAAGPPCPALGSSNCALGALRD-HQPAPYSAV 73

Query: 55  PSSAGGHPKA-HELSESCAGDKSPPGQASSKRARTAYTSAQLVELEKEFHFNRYLCRPRR 113
           P +    P   HE             +   +R RT +TSAQL ELE+ F    Y     R
Sbjct: 74  PYNFFPEPSGLHE-------------KRKQRRIRTTFTSAQLKELERVFAETHYPDIYTR 120

Query: 114 VEMANLLNLTERQIKIWFQNRRMKYKKDQKGKGMLTSSG 152
            E+A  ++LTE ++++WFQNRR K++K ++      ++G
Sbjct: 121 EELALKIDLTEARVQVWFQNRRAKFRKQERAASAKGAAG 159



>gi|27923733|sp|Q96QS3|ARX_HUMAN   Homeobox protein ARX (Aristaless-related homeobox)
          Length = 562

 Score = 60.5 bits (145), Expect = 8e-10
 Identities = 50/145 (34%), Positives = 70/145 (48%), Gaps = 17/145 (11%)

Query: 35  ASAALGADGEYHRPACSLQ-SPSSAGGHPKAHELSESCAGDKSPPG--QASSKRARTAYT 91
           A+AA+  +G    P   L   P  A G      +  S AG  S  G  +   +R RT +T
Sbjct: 278 AAAAVATEGGELSPKEELLLHPEDAEGKDGEDSVCLS-AGSDSEEGLLKRKQRRYRTTFT 336

Query: 92  SAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKDQKG------- 144
           S QL ELE+ F    Y     R E+A  L+LTE ++++WFQNRR K++K +K        
Sbjct: 337 SYQLEELERAFQKTHYPDVFTREELAMRLDLTEARVQVWFQNRRAKWRKREKAGAQTHPP 396

Query: 145 ----KGMLTSSGGQSP--SRSPVPP 163
                G L+++   SP    SP PP
Sbjct: 397 GLPFPGPLSATHPLSPYLDASPFPP 421



>gi|547658|sp|Q03014|HHEX_HUMAN   Homeobox protein PRH (Hematopoietically expressed homeobox)
           (Homeobox protein HEX)
          Length = 270

 Score = 60.1 bits (144), Expect = 1e-09
 Identities = 25/57 (43%), Positives = 39/57 (68%)

Query: 84  KRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKK 140
           K  +  +++ Q +ELEK+F   +YL  P R  +A +L L+ERQ+K WFQNRR K+++
Sbjct: 138 KGGQVRFSNDQTIELEKKFETQKYLSPPERKRLAKMLQLSERQVKTWFQNRRAKWRR 194



>gi|2833256|sp|Q14774|HLX1_HUMAN   Homeobox protein HLX1 (Homeobox protein HB24)
          Length = 488

 Score = 60.1 bits (144), Expect = 1e-09
 Identities = 27/74 (36%), Positives = 46/74 (62%), Gaps = 2/74 (2%)

Query: 86  ARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYK--KDQK 143
           +R  +++ Q   LEK F   +Y+ +P R ++A +L LT+ Q+K+WFQNRRMK++  K+ +
Sbjct: 279 SRAVFSNLQRKGLEKRFEIQKYVTKPDRKQLAAMLGLTDAQVKVWFQNRRMKWRHSKEAQ 338

Query: 144 GKGMLTSSGGQSPS 157
            +       G+ PS
Sbjct: 339 AQKDKDKEAGEKPS 352



>gi|20141539|sp|P31276|HXC13_HUMAN   Homeobox protein Hox-C13 (Hox-3G)
          Length = 330

 Score = 59.7 bits (143), Expect = 1e-09
 Identities = 26/57 (45%), Positives = 40/57 (70%)

Query: 84  KRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKK 140
           ++ R  YT  QL ELEKE+  ++++ + +R  ++   NL+ERQ+ IWFQNRR+K KK
Sbjct: 261 RKKRVPYTKVQLKELEKEYAASKFITKEKRRRISATTNLSERQVTIWFQNRRVKEKK 317



>gi|20532396|sp|O43763|TLX2_HUMAN   T-cell leukemia homeobox protein 2 (Homeobox protein Hox-11L1)
           (Neural crest homeobox protein)
          Length = 284

 Score = 59.7 bits (143), Expect = 1e-09
 Identities = 47/174 (27%), Positives = 74/174 (42%), Gaps = 46/174 (26%)

Query: 8   DSSAIYGGYPYQAANGFAYNANQQPYPASAALGADGEYHRPACS-LQSPSSAGGHPKAHE 66
           ++ A  GGY    A+G+    +  P P S+ +G  G    PA   L  P  AGG P    
Sbjct: 46  ENGAFSGGY--HGASGYGPAGSLAPLPGSSGVGPGGVIRVPAHRPLPVPPPAGGAPAVPG 103

Query: 67  LSE-----SCAG-----------------------------------DKSPPGQASSKRA 86
            S        AG                                   +++PP +   K+ 
Sbjct: 104 PSGLGGAGGLAGLTFPWMDSGRRFAKDRLTAALSPFSGTRRIGHPYQNRTPPKR---KKP 160

Query: 87  RTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKK 140
           RT+++ +Q++ELE+ F   +YL    R  +A  L +T+ Q+K WFQNRR K+++
Sbjct: 161 RTSFSRSQVLELERRFLRQKYLASAERAALAKALRMTDAQVKTWFQNRRTKWRR 214



>gi|48428084|sp|Q8N693|ESX1L_HUMAN   Extraembryonic, spermatogenesis, homeobox 1-like protein
          Length = 406

 Score = 59.3 bits (142), Expect = 2e-09
 Identities = 33/91 (36%), Positives = 53/91 (58%), Gaps = 3/91 (3%)

Query: 53  QSPSSAGGHPKAHELSESCAGDKSPPGQASSKRARTAYTSAQLVELEKEFHFNRYLCRPR 112
           + P +    P+  E  ++  G + P  +   +R RTA+T  QL ELE  F  ++Y     
Sbjct: 112 EPPQTTVEGPQPAEGPQTAEGPQPPERK---RRRRTAFTQFQLQELENFFDESQYPDVVA 168

Query: 113 RVEMANLLNLTERQIKIWFQNRRMKYKKDQK 143
           R  +A  LNLTE ++++WFQNRR K+K++Q+
Sbjct: 169 RERLAARLNLTEDRVQVWFQNRRAKWKRNQR 199



>gi|17380297|sp|Q9Y2V3|RX_HUMAN   Retinal homeobox protein Rx (Retina and anterior neural fold
           homeobox protein)
          Length = 346

 Score = 59.3 bits (142), Expect = 2e-09
 Identities = 46/148 (31%), Positives = 70/148 (47%), Gaps = 15/148 (10%)

Query: 34  PASAALGADGEYHRPACSLQ--SPSSAGGHPKAHELSESCAGDKSPPGQASSKRARTAYT 91
           P + A   + E  RP C  +      + G P      E+   ++  P +   +R RT +T
Sbjct: 86  PPAPAPAPEYEAPRPYCPKEPWEARPSPGLPVGPATGEAKLSEEEQP-KKKHRRNRTTFT 144

Query: 92  SAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKDQK---GKGML 148
           + QL ELE+ F  + Y     R E+A  +NL E ++++WFQNRR K+++ +K       L
Sbjct: 145 TYQLHELERAFEKSHYPDVYSREELAGKVNLPEVRVQVWFQNRRAKWRRQEKLEVSSMKL 204

Query: 149 TSSGGQSPSRSP---------VPPGAGG 167
             S   S SRSP           PG+GG
Sbjct: 205 QDSPLLSFSRSPPSATLSPLGAGPGSGG 232



>gi|2851475|sp|P35453|HXD13_HUMAN   Homeobox protein Hox-D13 (Hox-4I)
          Length = 335

 Score = 58.9 bits (141), Expect = 2e-09
 Identities = 26/57 (45%), Positives = 39/57 (68%)

Query: 84  KRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKK 140
           ++ R  YT  QL ELE E+  N+++ + +R  ++   NL+ERQ+ IWFQNRR+K KK
Sbjct: 269 RKKRVPYTKLQLKELENEYAINKFINKDKRRRISAATNLSERQVTIWFQNRRVKDKK 325



>gi|8247951|sp|P23759|PAX7_HUMAN   Paired box protein Pax-7 (HUP1)
          Length = 520

 Score = 58.5 bits (140), Expect = 3e-09
 Identities = 37/108 (34%), Positives = 54/108 (50%), Gaps = 8/108 (7%)

Query: 63  KAHELSESCAGDKSP--PGQASSKRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLL 120
           K + L E    +  P  P +   +R+RT +T+ QL ELEK F    Y     R E+A   
Sbjct: 195 KGNRLDEGSDVESEPDLPLKRKQRRSRTTFTAEQLEELEKAFERTHYPDIYTREELAQRT 254

Query: 121 NLTERQIKIWFQNRRMKYKKDQKGKGMLTS-----SGGQSPSRSPVPP 163
            LTE ++++WF NRR +++K Q G   L +      GG  P+  P  P
Sbjct: 255 KLTEARVQVWFSNRRARWRK-QAGANQLAAFNHLLPGGFPPTGMPTLP 301



>gi|3023579|sp|Q15699|CRT1_HUMAN   Cartilage homeoprotein 1 (CART-1)
          Length = 326

 Score = 58.5 bits (140), Expect = 3e-09
 Identities = 38/96 (39%), Positives = 52/96 (54%), Gaps = 4/96 (4%)

Query: 50  CSLQSPSSAGGHPKAHELSESCAGDKSPPGQASSK--RARTAYTSAQLVELEKEFHFNRY 107
           C+    S   G  +  EL E   GDK     +SSK  R RT +TS QL ELEK F    Y
Sbjct: 99  CNSLRMSPVKGMQEKGELDE--LGDKCDTNVSSSKKRRHRTTFTSLQLEELEKVFQKTHY 156

Query: 108 LCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKDQK 143
                R ++A    LTE ++++WFQNRR K++K ++
Sbjct: 157 PDVYVREQLALRTELTEARVQVWFQNRRAKWRKRER 192



>gi|8134644|sp|Q99453|PHX2B_HUMAN   Paired mesoderm homeobox protein 2B (Paired-like homeobox 2B)
           (PHOX2B homeodomain protein) (Neuroblastoma Phox)
           (NBPhox)
          Length = 314

 Score = 58.2 bits (139), Expect = 4e-09
 Identities = 38/123 (30%), Positives = 62/123 (50%), Gaps = 3/123 (2%)

Query: 21  ANGFAYNANQQPYPASAALGADGEYHRPACSLQSPSSAGGHPKAHELSESCAGDKSPPGQ 80
           A+GF YN  +  + A++   +       +CSL +       P A    +          +
Sbjct: 39  ASGFQYNPIRTTFGATSGCPS---LTPGSCSLGTLRDHQSSPYAAVPYKLFTDHGGLNEK 95

Query: 81  ASSKRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKK 140
              +R RT +TSAQL ELE+ F    Y     R E+A  ++LTE ++++WFQNRR K++K
Sbjct: 96  RKQRRIRTTFTSAQLKELERVFAETHYPDIYTREELALKIDLTEARVQVWFQNRRAKFRK 155

Query: 141 DQK 143
            ++
Sbjct: 156 QER 158



>gi|12644475|sp|Q99811|PRRX2_HUMAN   Paired mesoderm homeobox protein 2 (PRX-2) (Paired related homeobox
           protein 2)
          Length = 253

 Score = 57.8 bits (138), Expect = 5e-09
 Identities = 37/133 (27%), Positives = 62/133 (46%), Gaps = 16/133 (12%)

Query: 47  RPACSLQSPSSAGGHPKAHELSESCA---GDKSPPGQASS-------KRARTAYTSAQLV 96
           RP    ++   A   P         A   G+   PG+ S+       +R RT + S+QL 
Sbjct: 58  RPGARAEAREGAAREPSGGSSGSEAAPQDGECPSPGRGSAAKRKKKQRRNRTTFNSSQLQ 117

Query: 97  ELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKDQ------KGKGMLTS 150
            LE+ F    Y     R E+A  +NL+E ++++WFQNRR K+++++      +   +L S
Sbjct: 118 ALERVFERTHYPDAFVREELARRVNLSEARVQVWFQNRRAKFRRNERAMLASRSASLLKS 177

Query: 151 SGGQSPSRSPVPP 163
              ++    PV P
Sbjct: 178 YSQEAAIEQPVAP 190



>gi|1730095|sp|P52954|LBX1_HUMAN   Transcription factor LBX1
          Length = 280

 Score = 57.4 bits (137), Expect = 7e-09
 Identities = 26/58 (44%), Positives = 39/58 (67%)

Query: 84  KRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKD 141
           +++RTA+T+ Q+ ELEK F + +YL    R ++A  L LT  Q+  WFQNRR K K++
Sbjct: 125 RKSRTAFTNHQIYELEKRFLYQKYLSPADRDQIAQQLGLTNAQVITWFQNRRAKLKRE 182



>gi|13626112|sp|Q9H161|ALX4_HUMAN   Homeobox protein aristaless-like 4
          Length = 411

 Score = 56.6 bits (135), Expect = 1e-08
 Identities = 36/111 (32%), Positives = 55/111 (49%), Gaps = 5/111 (4%)

Query: 34  PASAALGADGEYHRPACSLQSPSSAGGHPKAH-ELSESCAGDKSPPGQASSKRARTAYTS 92
           P S  +G D  Y     S++     G   +A  +L        S   +   +R RT +TS
Sbjct: 168 PDSDTVGMDSSY----LSVKEAGVKGPQDRASSDLPSPLEKADSESNKGKKRRNRTTFTS 223

Query: 93  AQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKDQK 143
            QL ELEK F    Y     R ++A   +LTE ++++WFQNRR K++K ++
Sbjct: 224 YQLEELEKVFQKTHYPDVYAREQLAMRTDLTEARVQVWFQNRRAKWRKRER 274



>gi|1172022|sp|P23760|PAX3_HUMAN   Paired box protein Pax-3 (HUP2)
          Length = 479

 Score = 55.5 bits (132), Expect = 3e-08
 Identities = 32/91 (35%), Positives = 48/91 (52%), Gaps = 6/91 (6%)

Query: 78  PGQASSKRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMK 137
           P +   +R+RT +T+ QL ELE+ F    Y     R E+A    LTE ++++WF NRR +
Sbjct: 214 PLKRKQRRSRTTFTAEQLEELERAFERTHYPDIYTREELAQRAKLTEARVQVWFSNRRAR 273

Query: 138 YKKDQKGKGMLTS-----SGGQSPSRSPVPP 163
           ++K Q G   L +      GG  P+  P  P
Sbjct: 274 WRK-QAGANQLMAFNHLIPGGFPPTAMPTLP 303



>gi|6174916|sp|P54821|PRRX1_HUMAN   Paired mesoderm homeobox protein 1 (PRX-1) (Paired related homeobox
           protein 1) (Homeobox protein PHOX1)
          Length = 245

 Score = 55.1 bits (131), Expect = 3e-08
 Identities = 34/119 (28%), Positives = 60/119 (50%), Gaps = 9/119 (7%)

Query: 52  LQSPSSAGGHPKAHELSESCAGDKSPPGQASSKRARTAYTSAQLVELEKEFHFNRYLCRP 111
           L+SP    G     + ++    ++    +   +R RT + S+QL  LE+ F    Y    
Sbjct: 65  LESPGLTSGSDTPQQDNDQLNSEEKK--KRKQRRNRTTFNSSQLQALERVFERTHYPDAF 122

Query: 112 RRVEMANLLNLTERQIKIWFQNRRMKYKKDQ------KGKGMLTS-SGGQSPSRSPVPP 163
            R ++A  +NLTE ++++WFQNRR K+++++      K   +L S SG  +    P+ P
Sbjct: 123 VREDLARRVNLTEARVQVWFQNRRAKFRRNERAMLANKNASLLKSYSGDVTAVEQPIVP 181



>gi|18202099|sp|O60902|SHOX2_HUMAN   Short stature homeobox protein 2 (Paired-related homeobox protein
           SHOT) (Homeobox protein Og12X)
          Length = 331

 Score = 53.1 bits (126), Expect = 1e-07
 Identities = 37/105 (35%), Positives = 54/105 (51%), Gaps = 5/105 (4%)

Query: 54  SPSSAGGHPKAHELSESCAGDKSPPGQASSK--RARTAYTSAQLVELEKEFHFNRYLCRP 111
           SP      P+  +  E   G +   GQ   K  R+RT +T  QL ELE+ F    Y    
Sbjct: 110 SPRLTEVSPELKDRKEDAKGMEDE-GQTKIKQRRSRTNFTLEQLNELERLFDETHYPDAF 168

Query: 112 RRVEMANLLNLTERQIKIWFQNRRMKYKK--DQKGKGMLTSSGGQ 154
            R E++  L L+E ++++WFQNRR K +K  +Q  KG+L  +  Q
Sbjct: 169 MREELSQRLGLSEARVQVWFQNRRAKCRKQENQLHKGVLIGAASQ 213



>gi|3287764|sp|O43186|CRX_HUMAN   Cone-rod homeobox protein
          Length = 299

 Score = 52.4 bits (124), Expect = 2e-07
 Identities = 30/83 (36%), Positives = 46/83 (55%), Gaps = 1/83 (1%)

Query: 77  PPGQASSKRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRM 136
           P      +R RT +T +QL ELE  F   +Y     R E+A  +NL E ++++WF+NRR 
Sbjct: 33  PSAPRKQRRERTTFTRSQLEELEALFAKTQYPDVYAREEVALKINLPESRVQVWFKNRRA 92

Query: 137 KYKKD-QKGKGMLTSSGGQSPSR 158
           K ++  Q+ K      GGQ+ +R
Sbjct: 93  KCRQQRQQQKQQQQPPGGQAKAR 115



>gi|12230168|sp|Q9UBX0|HESX1_HUMAN   Homeobox expressed in ES cells 1 (Homeobox protein ANF) (hAnf)
          Length = 185

 Score = 52.0 bits (123), Expect = 3e-07
 Identities = 27/60 (45%), Positives = 36/60 (60%)

Query: 84  KRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKDQK 143
           +R RTA+T  Q+  LE  F  N Y     R ++A  LNL E +I+IWFQNRR K K+  +
Sbjct: 109 RRPRTAFTQNQIEVLENVFRVNCYPGIDIREDLAQKLNLEEDRIQIWFQNRRAKLKRSHR 168



>gi|25009572|sp|Q9NZR4|VSX1_HUMAN   Visual system homeobox 1 (Transcription factor VSX1) (Retinal inner
           nuclear layer homeobox protein) (Homeodomain protein
           RINX)
          Length = 365

 Score = 52.0 bits (123), Expect = 3e-07
 Identities = 36/101 (35%), Positives = 49/101 (48%), Gaps = 2/101 (1%)

Query: 48  PACSLQSPSSAGGHPKAHELSESCAGDKSPP--GQASSKRARTAYTSAQLVELEKEFHFN 105
           PA   Q  S +         SE     K+ P  G+   +R RT +T+ QL ELEK F   
Sbjct: 127 PALGRQKRSDSVSTSDEDSQSEDRNDLKASPTLGKRKKRRHRTVFTAHQLEELEKAFSEA 186

Query: 106 RYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKDQKGKG 146
            Y     R  +A    L E +I++WFQNRR K++K +K  G
Sbjct: 187 HYPDVYAREMLAVKTELPEDRIQVWFQNRRAKWRKREKRWG 227



>gi|13626107|sp|O95076|ALX3_HUMAN   Homeobox protein aristaless-like 3 (Proline-rich transcription
           factor ALX3)
          Length = 343

 Score = 52.0 bits (123), Expect = 3e-07
 Identities = 32/93 (34%), Positives = 53/93 (56%), Gaps = 10/93 (10%)

Query: 51  SLQSPSSAGGHPKAHELSESCAGDKSPPGQASSKRARTAYTSAQLVELEKEFHFNRYLCR 110
           SL  P S G  P + EL+++         ++  +R RT +++ QL ELEK F    Y   
Sbjct: 131 SLHLPLSPG-LPDSMELAKN---------KSKKRRNRTTFSTFQLEELEKVFQKTHYPDV 180

Query: 111 PRRVEMANLLNLTERQIKIWFQNRRMKYKKDQK 143
             R ++A   +LTE ++++WFQNRR K++K ++
Sbjct: 181 YAREQLALRTDLTEARVQVWFQNRRAKWRKRER 213



>gi|28380240|sp|Q9C0A1|ZFHX2_HUMAN   Zinc finger homeobox protein 2
          Length = 1427

 Score = 52.0 bits (123), Expect = 3e-07
 Identities = 33/98 (33%), Positives = 47/98 (47%), Gaps = 1/98 (1%)

Query: 56  SSAGGHPKAHELSESCAGDKSPPGQASSKRARTAYTSAQLVELEKEFHFNRYLCRPRRVE 115
           S AGGH    E  ES  G+  P   A  + +RT +T  Q   L+  F  + Y        
Sbjct: 424 SRAGGHWPIEE-EESSRGNLPPLVPAGRRFSRTKFTEFQTQALQSFFETSAYPKDGEVER 482

Query: 116 MANLLNLTERQIKIWFQNRRMKYKKDQKGKGMLTSSGG 153
           +A+LL L  R + +WFQN R K +K+    G + + GG
Sbjct: 483 LASLLGLASRVVVVWFQNARQKARKNACEGGSMPTGGG 520



 Score = 40.4 bits (93), Expect = 9e-04
 Identities = 35/124 (28%), Positives = 49/124 (39%), Gaps = 4/124 (3%)

Query: 32  PYPASAALGADGEYHRPACSLQSPSSAGGHPKAHELSESCAGDKSPPGQASSKRARTAYT 91
           P   + +L A       A SL  P S G    A   S    G    P     +R RT  +
Sbjct: 873 PESEACSLSAGDLSDSSASSLAEPESPG----AGGTSGGPGGGTGVPDGMGQRRYRTQMS 928

Query: 92  SAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKDQKGKGMLTSS 151
           S QL  ++  +   R         +   + L +R I++WFQN R K KK +       S+
Sbjct: 929 SLQLKIMKACYEAYRTPTMQECEVLGEEIGLPKRVIQVWFQNARAKEKKAKLQGTAAGST 988

Query: 152 GGQS 155
           GG S
Sbjct: 989 GGSS 992



 Score = 34.3 bits (77), Expect = 0.061
 Identities = 26/91 (28%), Positives = 41/91 (45%), Gaps = 8/91 (8%)

Query: 73  GDKSPPGQASSKRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQ 132
           G+  PP     KR RT     QL  L + +  +    R     ++  + L +R +++WFQ
Sbjct: 705 GEGEPP---RDKRLRTTILPEQLEILYRWYMQDSNPTRKMLDCISEEVGLKKRVVQVWFQ 761

Query: 133 NRRMKYKKDQKGKGMLTSSGGQSPSRSPVPP 163
           N R + +     KG   S+ G  PS +  PP
Sbjct: 762 NTRARER-----KGQFRSTPGGVPSPAVKPP 787



>gi|6685480|sp|O15499|GSCL_HUMAN   Homeobox protein goosecoid-like (GSC-2)
          Length = 205

 Score = 51.6 bits (122), Expect = 4e-07
 Identities = 36/115 (31%), Positives = 56/115 (48%), Gaps = 10/115 (8%)

Query: 32  PYPASAALGADGEYHR---PACSLQSPSSAGGHPKAHELSESCAGDKSPPGQASSKRART 88
           P  A+A LGA   +     PA  L   + AGG       S +  G   P  Q  ++R RT
Sbjct: 79  PPEAAAGLGARLAWPLRLGPAVPLSLGAPAGG-------SGALPGAVGPGSQRRTRRHRT 131

Query: 89  AYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKDQK 143
            ++  QL  LE  F  N+Y     R  +A  + L E ++++WF+NRR K++  ++
Sbjct: 132 IFSEEQLQALEALFVQNQYPDVSTRERLAGRIRLREERVEVWFKNRRAKWRHQKR 186



>gi|51702790|sp|P63015|PAX6_MOUSE   Paired box protein Pax-6 (Oculorhombin)
 gi|6174889|sp|P26367|PAX6_HUMAN   Paired box protein Pax-6 (Oculorhombin) (Aniridia, type II protein)
          Length = 422

 Score = 51.2 bits (121), Expect = 5e-07
 Identities = 26/78 (33%), Positives = 44/78 (56%), Gaps = 1/78 (1%)

Query: 84  KRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKDQK 143
           +R RT++T  Q+  LEKEF    Y     R  +A  ++L E +I++WF NRR K+++++K
Sbjct: 211 QRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEK 270

Query: 144 GKGMLTSSGGQSPSRSPV 161
            +         +PS  P+
Sbjct: 271 LRNQ-RRQASNTPSHIPI 287



>gi|6831676|sp|O15266|SHOX_HUMAN   Short stature homeobox protein (Short stature homeobox containing
           protein) (Pseudoautosomal homeobox containing osteogenic
           protein)
          Length = 292

 Score = 50.8 bits (120), Expect = 6e-07
 Identities = 28/77 (36%), Positives = 45/77 (58%), Gaps = 2/77 (2%)

Query: 74  DKSPPGQASSKRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQN 133
           D+    +   +R+RT +T  QL ELE+ F    Y     R E++  L L+E ++++WFQN
Sbjct: 108 DEDGQTKLKQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQVWFQN 167

Query: 134 RRMKYKK--DQKGKGML 148
           RR K +K  +Q  KG++
Sbjct: 168 RRAKCRKQENQMHKGVI 184



>gi|417425|sp|P32242|OTX1_HUMAN   Homeobox protein OTX1
          Length = 354

 Score = 50.8 bits (120), Expect = 6e-07
 Identities = 32/90 (35%), Positives = 46/90 (51%), Gaps = 1/90 (1%)

Query: 77  PPGQASSKRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRM 136
           P      +R RT +T +QL  LE  F   RY     R E+A  +NL E ++++WF+NRR 
Sbjct: 32  PATPRKQRRERTTFTRSQLDVLEALFAKTRYPDIFMREEVALKINLPESRVQVWFKNRRA 91

Query: 137 KYKKDQKGKGMLTSSGGQSPSRSPVPPGAG 166
           K ++ Q+  G  T S       SPV   +G
Sbjct: 92  KCRQQQQ-SGSGTKSRPAKKKSSPVRESSG 120



>gi|3914276|sp|O43316|PAX4_HUMAN   Paired box protein Pax-4
          Length = 350

 Score = 50.4 bits (119), Expect = 8e-07
 Identities = 30/96 (31%), Positives = 49/96 (51%), Gaps = 3/96 (3%)

Query: 72  AGDKSPPGQ--ASSKRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKI 129
           +G ++P G    +  R RT ++ +Q   LEKEF   +Y     R ++A   +L E  +++
Sbjct: 157 SGSETPRGTHPGTGHRNRTIFSPSQAEALEKEFQRGQYPDSVARGKLATATSLPEDTVRV 216

Query: 130 WFQNRRMKYKKDQKGKGMLTSSGGQSPSRSP-VPPG 164
           WF NRR K+++ +K K  +   G       P V PG
Sbjct: 217 WFSNRRAKWRRQEKLKWEMQLPGASQGLTVPRVAPG 252



>gi|417427|sp|P32243|OTX2_HUMAN   Homeobox protein OTX2
          Length = 289

 Score = 50.1 bits (118), Expect = 1e-06
 Identities = 30/82 (36%), Positives = 45/82 (54%), Gaps = 4/82 (4%)

Query: 77  PPGQASSKRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRM 136
           P      +R RT +T AQL  LE  F   RY     R E+A  +NL E ++++WF+NRR 
Sbjct: 32  PATPRKQRRERTTFTRAQLDVLEALFAKTRYPDIFMREEVALKINLPESRVQVWFKNRRA 91

Query: 137 KYKKDQKGKGMLTSSGGQSPSR 158
           K ++ Q+ +     +GGQ+  R
Sbjct: 92  KCRQQQQQQ----QNGGQNKVR 109



>gi|17374365|sp|P58304|CHX10_HUMAN   Homeobox protein CHX10 (Ceh-10 homeodomain containing homolog)
          Length = 361

 Score = 50.1 bits (118), Expect = 1e-06
 Identities = 27/60 (45%), Positives = 37/60 (61%)

Query: 84  KRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKDQK 143
           +R RT +TS QL ELEK F+   Y     R  +A    L E +I++WFQNRR K++K +K
Sbjct: 149 RRHRTIFTSYQLEELEKAFNEAHYPDVYAREMLAMKTELPEDRIQVWFQNRRAKWRKREK 208



>gi|37537960|sp|Q8NHV9|PEPP1_HUMAN   Paired-like homeobox protein PEPP-1 (Ovary-, testis- and
           epididymis-expressed gene protein)
          Length = 184

 Score = 49.3 bits (116), Expect = 2e-06
 Identities = 26/96 (27%), Positives = 47/96 (48%), Gaps = 7/96 (7%)

Query: 55  PSSAGGHPKAHELSE-------SCAGDKSPPGQASSKRARTAYTSAQLVELEKEFHFNRY 107
           P   GG+ +  +  +         A +   P     +  RT +T  Q+ ELE  F   +Y
Sbjct: 68  PEGGGGNQEPRQQPQPPPEEPAQAAMEGPQPENMQPRTRRTKFTLLQVEELESVFRHTQY 127

Query: 108 LCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKDQK 143
              P R E+A  L +TE ++++WF+N+R + ++ Q+
Sbjct: 128 PDVPTRRELAENLGVTEDKVRVWFKNKRARCRRHQR 163



>gi|18202510|sp|Q15911|ATBF1_HUMAN   Alpha-fetoprotein enhancer binding protein (AT motif-binding factor)
            (AT-binding transcription factor 1)
          Length = 3703

 Score = 49.3 bits (116), Expect = 2e-06
 Identities = 28/73 (38%), Positives = 40/73 (54%), Gaps = 3/73 (4%)

Query: 77   PPGQ---ASSKRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQN 133
            PP Q    S + +RT +T  QL  L+  F  N Y       +++NLLNL  R I +WFQN
Sbjct: 2233 PPKQEYWGSKRSSRTRFTDYQLRVLQDFFDANAYPKDDEFEQLSNLLNLPTRVIVVWFQN 2292

Query: 134  RRMKYKKDQKGKG 146
             R K +K+ + +G
Sbjct: 2293 ARQKARKNYENQG 2305



 Score = 40.4 bits (93), Expect = 9e-04
 Identities = 30/89 (33%), Positives = 46/89 (51%), Gaps = 10/89 (11%)

Query: 54   SPSSAGGHPKAHELSESCAGDKSPPGQASSKRARTAYTSAQLVELEKEFHFNRYLCRPRR 113
            SP ++G   K+ +     +GD+  PGQ   KR RT  T+ QL  L+  F+  R       
Sbjct: 2927 SPGASGSAGKSGD-----SGDR--PGQ---KRFRTQMTNLQLKVLKSCFNDYRTPTMLEC 2976

Query: 114  VEMANLLNLTERQIKIWFQNRRMKYKKDQ 142
              + N + L +R +++WFQN R K KK +
Sbjct: 2977 EVLGNDIGLPKRVVQVWFQNARAKEKKSK 3005



 Score = 37.0 bits (84), Expect = 0.009
 Identities = 22/64 (34%), Positives = 31/64 (48%)

Query: 80   QASSKRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYK 139
            Q  +KR RT  T  QL  L + F  N      +  EMA+   L ++ IK WF+N   K +
Sbjct: 2142 QQQNKRPRTRITDDQLRVLRQYFDINNSPSEEQIKEMADKSGLPQKVIKHWFRNTLFKER 2201

Query: 140  KDQK 143
            +  K
Sbjct: 2202 QRNK 2205



 Score = 36.6 bits (83), Expect = 0.012
 Identities = 30/104 (28%), Positives = 47/104 (45%), Gaps = 9/104 (8%)

Query: 48   PACSLQSPSSAGG-----HPKAHELSESCAG--DKSPPGQASS--KRARTAYTSAQLVEL 98
            PA S  SPS+          K  E + +  G  D    G+     KR RT  T  QL  L
Sbjct: 2597 PASSATSPSTPTSTMNTLKRKLEEKASASPGENDSGTGGEEPQRDKRLRTTITPEQLEIL 2656

Query: 99   EKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKDQ 142
             +++  +    R     +A+ + L +R +++WFQN R + +K Q
Sbjct: 2657 YQKYLLDSNPTRKMLDHIAHEVGLKKRVVQVWFQNTRARERKGQ 2700



>gi|6093787|sp|O75360|PROP1_HUMAN   Homeobox protein prophet of Pit-1 (PROP-1) (Pituitary specific
           homeodomain factor)
          Length = 226

 Score = 48.9 bits (115), Expect = 2e-06
 Identities = 33/111 (29%), Positives = 53/111 (47%), Gaps = 7/111 (6%)

Query: 33  YPASAALGADGEYHRPACSLQSPSSAGGHPKAHELSESCAGDKSPPGQASSKRARTAYTS 92
           +PA+       +   P C  + P + GG  +         G +  P   S +R RT ++ 
Sbjct: 26  HPATGTPTTTVDSSAPPCR-RLPGAGGGRSRFSPQG----GQRGRPH--SRRRHRTTFSP 78

Query: 93  AQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKDQK 143
            QL +LE  F  N+Y     R  +A    L+E +I++WFQNRR K +K ++
Sbjct: 79  VQLEQLESAFGRNQYPDIWARESLARDTGLSEARIQVWFQNRRAKQRKQER 129



>gi|37537987|sp|Q9BQY4|PEP2_HUMAN   Paired-like homeobox protein PEPP-2 (Testis homeobox gene 1)
          Length = 288

 Score = 47.8 bits (112), Expect = 5e-06
 Identities = 24/66 (36%), Positives = 38/66 (57%), Gaps = 1/66 (1%)

Query: 78  PGQASSKRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMK 137
           PG A       A+T  QL ELE+ F   ++     R  +A  +N+TE  ++IWF+NRR K
Sbjct: 130 PGNAQQPNVH-AFTPLQLQELERIFQREQFPSEFLRRRLARSMNVTELAVQIWFENRRAK 188

Query: 138 YKKDQK 143
           +++ Q+
Sbjct: 189 WRRHQR 194



>gi|12643415|sp|Q9UBR4|LHX3_HUMAN   LIM/homeobox protein Lhx3
          Length = 397

 Score = 47.8 bits (112), Expect = 5e-06
 Identities = 30/100 (30%), Positives = 48/100 (48%), Gaps = 10/100 (10%)

Query: 75  KSPPGQASSKRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNR 134
           K    +A++KR RT  T+ QL  L+  ++ +    R  R ++++   L  R +++WFQNR
Sbjct: 149 KQREAEATAKRPRTTITAKQLETLKSAYNTSPKPARHVREQLSSETGLDMRVVQVWFQNR 208

Query: 135 RMKYKKDQKGKG----------MLTSSGGQSPSRSPVPPG 164
           R K K+ +K  G          M  S GG    +  V  G
Sbjct: 209 RAKEKRLKKDAGRQRWGQYFRNMKRSRGGSKSDKDSVQEG 248



>gi|7531125|sp|P56915|GSC_HUMAN   Homeobox protein goosecoid
          Length = 252

 Score = 46.6 bits (109), Expect = 1e-05
 Identities = 26/84 (30%), Positives = 44/84 (52%), Gaps = 9/84 (10%)

Query: 84  KRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKDQK 143
           +R RT +T  QL  LE  F   +Y     R ++A  ++L E ++++WF+NRR K+++ ++
Sbjct: 156 RRHRTIFTDEQLEALENLFQETKYPDVGTREQLARKVHLREEKVEVWFKNRRAKWRRQKR 215

Query: 144 G---------KGMLTSSGGQSPSR 158
                     K   TSS   SP +
Sbjct: 216 SSSEESENAEKWNKTSSSKASPEK 239



>gi|47117871|sp|P78411|IRX5_HUMAN   Iroquois-class homeodomain protein IRX-5 (Iroquois homeobox protein
           5) (Homeodomain protein IRXB2) (IRX-2A)
          Length = 482

 Score = 44.7 bits (104), Expect = 5e-05
 Identities = 42/140 (30%), Positives = 59/140 (42%), Gaps = 23/140 (16%)

Query: 17  PYQAANGFA-----YNANQQ--PYPASAALGADGEY------HRPACSLQSPSSAGGHPK 63
           PY  +  F      YN++ Q    PA+AA  A   Y      H P  +     S G HP 
Sbjct: 47  PYAGSTAFTAPSPGYNSHLQYGADPAAAAAAAFSSYVGSPYDHTPGMA----GSLGYHPY 102

Query: 64  AHELSESCAGDKSPPGQASSKRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLT 123
           A  L     GD  P  + ++ R  TA   A L E  K    N Y  +  ++ +A +  +T
Sbjct: 103 AAPLGSYPYGD--PAYRKNATRDATATLKAWLNEHRK----NPYPTKGEKIMLAIITKMT 156

Query: 124 ERQIKIWFQNRRMKYKKDQK 143
             Q+  WF N R + KK+ K
Sbjct: 157 LTQVSTWFANARRRLKKENK 176



>gi|8134548|sp|Q9UPM6|LHX61_HUMAN   LIM/homeobox protein Lhx6.1 (Lhx6)
          Length = 363

 Score = 44.7 bits (104), Expect = 5e-05
 Identities = 26/78 (33%), Positives = 44/78 (56%), Gaps = 2/78 (2%)

Query: 83  SKRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKDQ 142
           +KRART++T+ QL  ++ +F  +         ++A++  L+ R I++WFQN R ++KK  
Sbjct: 219 AKRARTSFTAEQLQVMQAQFAQDNNPDAQTLQKLADMTGLSRRVIQVWFQNCRARHKKHT 278

Query: 143 KGKGMLTSSGGQSPSRSP 160
               +  S  G  PSR P
Sbjct: 279 PQHPVPPS--GAPPSRLP 294



>gi|12643346|sp|Q9NQ69|LHX9_HUMAN   LIM/homeobox protein Lhx9
          Length = 388

 Score = 44.3 bits (103), Expect = 6e-05
 Identities = 28/91 (30%), Positives = 47/91 (51%), Gaps = 6/91 (6%)

Query: 77  PPGQASSKRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRM 136
           PP Q  +KR RT++   QL  ++  F  N         ++A    LT+R +++WFQN R 
Sbjct: 253 PPSQ-KTKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQVWFQNARA 311

Query: 137 KYKKD--QKGKGMLTSSGGQSPSRSPVPPGA 165
           K++++  ++  G +  + G S    P PP A
Sbjct: 312 KFRRNLLRQENGGVDKADGTS---LPAPPSA 339



>gi|20138668|sp|Q969G2|LHX4_HUMAN   LIM/homeobox protein Lhx4
          Length = 367

 Score = 43.9 bits (102), Expect = 8e-05
 Identities = 23/67 (34%), Positives = 38/67 (56%)

Query: 80  QASSKRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYK 139
           +A +KR RT  T+ QL  L+  +  +    R  R ++++   L  R +++WFQNRR K K
Sbjct: 131 EAGAKRPRTTITAKQLETLKNAYKNSPKPARHVREQLSSETGLDMRVVQVWFQNRRAKEK 190

Query: 140 KDQKGKG 146
           + +K  G
Sbjct: 191 RLKKDAG 197



>gi|8247936|sp|P50458|LHX2_HUMAN   LIM/homeobox protein Lhx2 (Homeobox protein LH-2)
          Length = 406

 Score = 43.5 bits (101), Expect = 1e-04
 Identities = 25/95 (26%), Positives = 47/95 (49%), Gaps = 3/95 (3%)

Query: 74  DKSPPGQASSKRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQN 133
           D+  P    +KR RT++   QL  ++  F  N         ++A    LT+R +++WFQN
Sbjct: 257 DQPYPSSQKTKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQVWFQN 316

Query: 134 RRMKYKKD---QKGKGMLTSSGGQSPSRSPVPPGA 165
            R K++++   Q+  G+  S+     + +P  P +
Sbjct: 317 ARAKFRRNLLRQENTGVDKSTDAALQTGTPSGPAS 351



>gi|47117874|sp|P78415|IRX3_HUMAN   Iroquois-class homeodomain protein IRX-3 (Iroquois homeobox protein
           3) (Homeodomain protein IRXB1)
          Length = 501

 Score = 43.1 bits (100), Expect = 1e-04
 Identities = 45/146 (30%), Positives = 65/146 (44%), Gaps = 21/146 (14%)

Query: 10  SAIYGGYPYQAANGFA----YNANQQPY----PASAALGADGEYHRPACSLQSPSSAGG- 60
           S++YG  PY AA   A    Y A   PY    P    LGA  E  + +  +Q P++A   
Sbjct: 54  SSVYGA-PYAAAAAAAAAQGYGAFL-PYAAELPIFPQLGAQYEL-KDSPGVQHPAAAAAF 110

Query: 61  ---HPKAHELSESCAGDKSPPGQASSKRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMA 117
              HP  +   +   GD S P  A+  R  T+   A L E  K    N Y  +  ++ +A
Sbjct: 111 PHPHPAFYPYGQYQFGDPSRPKNAT--RESTSTLKAWLNEHRK----NPYPTKGEKIMLA 164

Query: 118 NLLNLTERQIKIWFQNRRMKYKKDQK 143
            +  +T  Q+  WF N R + KK+ K
Sbjct: 165 IITKMTLTQVSTWFANARRRLKKENK 190



>gi|27923801|sp|Q8TE12|LMX1A_HUMAN   LIM homeobox transcription factor 1 alpha (LIM/homeobox protein
           LMX1A) (LIM-homeobox protein 1.1) (LMX-1.1)
          Length = 382

 Score = 43.1 bits (100), Expect = 1e-04
 Identities = 32/106 (30%), Positives = 46/106 (43%), Gaps = 7/106 (6%)

Query: 42  DGEYHRPACSLQSPSSAGGHPKAHELSESCAGDKSPPGQASS-------KRARTAYTSAQ 94
           D E  R   SL SP+++       E S   +   +  G A         KR RT  T+ Q
Sbjct: 147 DYEKERELLSLVSPAASDSGKSDDEESLCKSAHGAGKGTAEEGKDHKRPKRPRTILTTQQ 206

Query: 95  LVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKK 140
               +  F  +   CR  R  +A    L+ R +++WFQN+R K KK
Sbjct: 207 RRAFKASFEVSSKPCRKVRETLAAETGLSVRVVQVWFQNQRAKMKK 252



>gi|1352729|sp|P40425|PBX2_HUMAN   Pre-B-cell leukemia transcription factor-2 (Homeobox protein PBX2)
           (G17 protein)
          Length = 430

 Score = 42.0 bits (97), Expect = 3e-04
 Identities = 30/98 (30%), Positives = 45/98 (45%), Gaps = 20/98 (20%)

Query: 92  SAQLVELEKEFHF----NRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKDQKGK-- 145
           S Q  E+  E+ +    N Y     + E+A    +T  Q+  WF N+R++YKK+  GK  
Sbjct: 252 SKQATEVLNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKN-IGKFQ 310

Query: 146 ----------GMLTSSGGQSPSRSPVPP---GAGGYLN 170
                      +  + GG S + SP PP   G+GG  N
Sbjct: 311 EEANIYAVKTAVSVTQGGHSRTSSPTPPSSAGSGGSFN 348



>gi|123402|sp|P09086|PO2F2_HUMAN   POU domain, class 2, transcription factor 2 (Octamer-binding
           transcription factor 2) (Oct-2) (OTF-2)
           (Lymphoid-restricted immunoglobulin octamer binding
           protein NF-A2)
          Length = 479

 Score = 40.4 bits (93), Expect = 9e-04
 Identities = 33/112 (29%), Positives = 50/112 (44%), Gaps = 6/112 (5%)

Query: 62  PKAHELSESCAGDKSPPGQASSKRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLN 121
           P  ++LS    G    PG+   KR  T+  +     LEK F  N+       + +A  L+
Sbjct: 278 PSPNQLSSPSLGFDGLPGRRRKKR--TSIETNVRFALEKSFLANQKPTSEEILLIAEQLH 335

Query: 122 LTERQIKIWFQNRRMKYKK-DQKGKGMLTSSGGQSPSRSP---VPPGAGGYL 169
           + +  I++WF NRR K K+ +      +  S G+  S SP    P G  G L
Sbjct: 336 MEKEVIRVWFCNRRQKEKRINPCSAAPMLPSPGKPASYSPHMVTPQGGAGTL 387



>gi|20978495|sp|Q96A47|ISL2_HUMAN   Insulin gene enhancer protein ISL-2 (Islet-2)
          Length = 359

 Score = 40.4 bits (93), Expect = 9e-04
 Identities = 31/95 (32%), Positives = 43/95 (45%), Gaps = 8/95 (8%)

Query: 54  SPSSAGGHPKAHELSESCAGDKSPPGQASSKRARTAYTS-AQLVELEKEFHFNR--YLCR 110
           SP S G  P A  L    AG    P        +T  T+  + V  EK+ H  R  Y   
Sbjct: 154 SPRSPGPLPGARGLHLPDAGSGRQPALRPHVHKQTEKTTRVRTVLNEKQLHTLRTCYAAN 213

Query: 111 PR-----RVEMANLLNLTERQIKIWFQNRRMKYKK 140
           PR     + ++  +  L+ R I++WFQN+R K KK
Sbjct: 214 PRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKK 248



>gi|8247930|sp|O60663|LMX1B_HUMAN   LIM homeobox transcription factor 1 beta (LIM/homeobox protein
           LMX1B) (LIM-homeobox protein 1.2) (LMX-1.2)
          Length = 379

 Score = 40.4 bits (93), Expect = 9e-04
 Identities = 21/57 (36%), Positives = 30/57 (52%)

Query: 84  KRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKK 140
           KR RT  T+ Q    +  F  +   CR  R  +A    L+ R +++WFQN+R K KK
Sbjct: 197 KRPRTILTTQQRRAFKASFEVSSKPCRKVRETLAAETGLSVRVVQVWFQNQRAKMKK 253



>gi|47117908|sp|Q9BZI1|IRX2_HUMAN   Iroquois-class homeodomain protein IRX-2 (Iroquois homeobox protein
           2) (Homeodomain protein IRXA2)
          Length = 471

 Score = 39.7 bits (91), Expect = 0.001
 Identities = 37/144 (25%), Positives = 59/144 (40%), Gaps = 23/144 (15%)

Query: 19  QAANGFAYNANQQPYPASAALGADG--------EYHRPACSLQS--PSSAGGHPKAHELS 68
           ++A+G A++    PYP SAA  A          +Y   A +  +  PS  G    AH   
Sbjct: 38  RSASGSAFS----PYPGSAAFTAQAATGFGSPLQYSADAAAAAAGFPSYMGAPYDAHTTG 93

Query: 69  ESCAGDKSPPGQASS---------KRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANL 119
            + A    P G A+          ++  T   +A L     E   N Y  +  ++ +A +
Sbjct: 94  MTGAISYHPYGSAAYPYQLNDPAYRKNATRDATATLKAWLNEHRKNPYPTKGEKIMLAII 153

Query: 120 LNLTERQIKIWFQNRRMKYKKDQK 143
             +T  Q+  WF N R + KK+ K
Sbjct: 154 TKMTLTQVSTWFANARRRLKKENK 177



>gi|28202257|sp|P14859|PO2F1_HUMAN   POU domain, class 2, transcription factor 1 (Octamer-binding
           transcription factor 1) (Oct-1) (OTF-1) (NF-A1)
          Length = 743

 Score = 38.9 bits (89), Expect = 0.002
 Identities = 28/90 (31%), Positives = 41/90 (45%), Gaps = 5/90 (5%)

Query: 68  SESCAGDKSPPGQASSKRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQI 127
           S S        G +  ++ RT+  +   V LEK F  N+         +A+ LN+ +  I
Sbjct: 364 SPSALNSPGIEGLSRRRKKRTSIETNIRVALEKSFLENQKPTSEEITMIADQLNMEKEVI 423

Query: 128 KIWFQNRRMKYKKDQKGKGMLTSSGGQSPS 157
           ++WF NRR K K+         SSGG S S
Sbjct: 424 RVWFCNRRQKEKRINP-----PSSGGTSSS 448



>gi|47117872|sp|P78412|IRX6_HUMAN   Iroquois-class homeodomain protein IRX-6 (Iroquois homeobox protein
           6) (Homeodomain protein IRXB3)
          Length = 445

 Score = 36.2 bits (82), Expect = 0.016
 Identities = 42/153 (27%), Positives = 59/153 (38%), Gaps = 12/153 (7%)

Query: 12  IYGGYPYQAANGFAYNANQQPY---PAS--AALGADGEYHRPACSLQSPSSAGG--HPKA 64
           IYG  PY AA          PY   P S   AL    E+   A S  S  +  G  +P  
Sbjct: 70  IYGA-PYAAAAAAQSYPGYLPYSPEPPSLYGALNPQYEFKEAAGSFTSSLAQPGAYYPYE 128

Query: 65  HELSE---SCAGDKSPPGQASSKRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLN 121
             L +      G     G    K A T  T++ L     E   N Y  +  ++ +A +  
Sbjct: 129 RTLGQYQYERYGAVELSGAGRRKNA-TRETTSTLKAWLNEHRKNPYPTKGEKIMLAIITK 187

Query: 122 LTERQIKIWFQNRRMKYKKDQKGKGMLTSSGGQ 154
           +T  Q+  WF N R + KK+ K      + GG+
Sbjct: 188 MTLTQVSTWFANARRRLKKENKMTWAPKNKGGE 220



>gi|60416412|sp|P48742|LHX1_HUMAN   LIM/homeobox protein Lhx1 (LIM homeobox protein 1) (Homeobox
           protein Lim-1)
          Length = 406

 Score = 35.4 bits (80), Expect = 0.027
 Identities = 33/111 (29%), Positives = 47/111 (42%), Gaps = 11/111 (9%)

Query: 36  SAALGADGEYHRPACSLQSPSSAGGHPKAHE---LSESCAGDKSPPGQ---ASSKRARTA 89
           SA  G+D     P+ S  S   +    K  E   +S+  AG      Q   A  +  RT 
Sbjct: 132 SATTGSD-----PSLSPDSQDPSQDDAKDSESANVSDKEAGSNENDDQNLGAKRRGPRTT 186

Query: 90  YTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKK 140
             + QL  L+  F       R  R ++A    L  R I++WFQNRR K ++
Sbjct: 187 IKAKQLETLKAAFAATPKPTRHIREQLAQETGLNMRVIQVWFQNRRSKERR 237



>gi|12644347|sp|P78413|IRX4_HUMAN   Iroquois-class homeodomain protein IRX-4 (Iroquois homeobox protein
           4) (Homeodomain protein IRXA3)
          Length = 519

 Score = 35.4 bits (80), Expect = 0.027
 Identities = 31/137 (22%), Positives = 57/137 (41%), Gaps = 8/137 (5%)

Query: 12  IYGGYPYQAANGFA----YNANQQP-YPASAALGADGEYHRPACSLQSPSSAGGHPKAHE 66
           +YGG PY  + G+     Y +     Y  ++    DG     A    +P++A  +P    
Sbjct: 72  VYGG-PYGGSQGYGNYVTYGSEASAFYSLNSFDSKDGS--GSAHGGLAPAAAAYYPYEPA 128

Query: 67  LSESCAGDKSPPGQASSKRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQ 126
           L +            + ++  T  T++ L    +E   N Y  +  ++ +A +  +T  Q
Sbjct: 129 LGQYPYDRYGTMDSGTRRKNATRETTSTLKAWLQEHRKNPYPTKGEKIMLAIITKMTLTQ 188

Query: 127 IKIWFQNRRMKYKKDQK 143
           +  WF N R + KK+ K
Sbjct: 189 VSTWFANARRRLKKENK 205



>gi|730281|sp|P40426|PBX3_HUMAN   Pre-B-cell leukemia transcription factor-3 (Homeobox protein PBX3)
          Length = 434

 Score = 34.7 bits (78), Expect = 0.047
 Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 4/54 (7%)

Query: 92  SAQLVELEKEFHF----NRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKD 141
           S Q  E+  E+ +    N Y     + E+A   ++T  Q+  WF N+R++YKK+
Sbjct: 243 SKQATEILNEYFYSHLSNPYPSEEAKEELAKKCSITVSQVSNWFGNKRIRYKKN 296



>gi|2495306|sp|Q14863|PO6F1_HUMAN   POU domain, class 6, transcription factor 1 (mPOU homeobox protein)
           (Brain-specific homeobox/POU domain protein 5) (Brain-5)
           (Brn-5 protein)
          Length = 301

 Score = 34.7 bits (78), Expect = 0.047
 Identities = 21/66 (31%), Positives = 29/66 (43%), Gaps = 1/66 (1%)

Query: 79  GQASSKRAR-TAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMK 137
           G+ S KR R T++T   +  L   F  N         E+A  LN     +++WF NRR  
Sbjct: 229 GEPSKKRKRRTSFTPQAIEALNAYFEKNPLPTGQEITEIAKELNYDREVVRVWFCNRRQT 288

Query: 138 YKKDQK 143
            K   K
Sbjct: 289 LKNTSK 294



>gi|47606423|sp|P61371|ISL1_HUMAN   Insulin gene enhancer protein ISL-1 (Islet-1)
 gi|47606425|sp|P61373|ISL1_MESAU   Insulin gene enhancer protein ISL-1 (Islet-1)
 gi|47606424|sp|P61372|ISL1_MOUSE   Insulin gene enhancer protein ISL-1 (Islet-1)
 gi|47606422|sp|P61374|ISL1_RAT   Insulin gene enhancer protein ISL-1 (Islet-1)
          Length = 349

 Score = 34.7 bits (78), Expect = 0.047
 Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 7/57 (12%)

Query: 91  TSAQLVELEKEFHFNR--YLCRPR-----RVEMANLLNLTERQIKIWFQNRRMKYKK 140
           T  + V  EK+ H  R  Y   PR     + ++  +  L+ R I++WFQN+R K KK
Sbjct: 182 TRVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKK 238



>gi|47117873|sp|P78414|IRX1_HUMAN   Iroquois-class homeodomain protein IRX-1 (Iroquois homeobox protein
           1) (Homeodomain protein IRXA1)
          Length = 480

 Score = 34.7 bits (78), Expect = 0.047
 Identities = 35/133 (26%), Positives = 54/133 (40%), Gaps = 13/133 (9%)

Query: 18  YQAANGFAYNANQQ---PYPASAALGAD--GEYHRPACSLQSPSSAGGH--PKAHELSES 70
           Y AA  +A   N     PY A  +L +    +Y         P++   H  P  +   + 
Sbjct: 64  YAAAGPYAGAPNYSAFLPYAADLSLFSQMGSQYELKDNPGVHPATFAAHTAPAYYPYGQF 123

Query: 71  CAGDKSPPGQASSKRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIW 130
             GD   P  A+  R  T+   A L E  K    N Y  +  ++ +A +  +T  Q+  W
Sbjct: 124 QYGDPGRPKNAT--RESTSTLKAWLNEHRK----NPYPTKGEKIMLAIITKMTLTQVSTW 177

Query: 131 FQNRRMKYKKDQK 143
           F N R + KK+ K
Sbjct: 178 FANARRRLKKENK 190



>gi|28201884|sp|P78424|PO6F2_HUMAN   POU domain, class 6, transcription factor 2 (Retina-derived
           POU-domain factor-1) (RPF-1)
          Length = 684

 Score = 34.3 bits (77), Expect = 0.061
 Identities = 17/63 (26%), Positives = 28/63 (44%)

Query: 81  ASSKRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKK 140
           +  ++ RT++T   L  L   F  N +       E+A  LN     +++WF N+R   K 
Sbjct: 598 SKKRKRRTSFTPQALEILNAHFEKNTHPSGQEMTEIAEKLNYDREVVRVWFCNKRQALKN 657

Query: 141 DQK 143
             K
Sbjct: 658 TIK 660



>gi|18202938|sp|Q9H2C1|LHX5_HUMAN   LIM/homeobox protein Lhx5
          Length = 402

 Score = 33.9 bits (76), Expect = 0.080
 Identities = 22/71 (30%), Positives = 35/71 (49%), Gaps = 2/71 (2%)

Query: 72  AGDKSPPGQASSKRA--RTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKI 129
           A +++    + +KR   RT   + QL  L+  F       R  R ++A    L  R I++
Sbjct: 167 ANNENEEQNSGTKRRGPRTTIKAKQLETLKAAFAATPKPTRHIREQLAQETGLNMRVIQV 226

Query: 130 WFQNRRMKYKK 140
           WFQNRR K ++
Sbjct: 227 WFQNRRSKERR 237



>gi|2495300|sp|Q12837|PO42_HUMAN   POU domain, class 4, transcription factor 2 (Brain-specific
           homeobox/POU domain protein 3B) (Brn-3B)
          Length = 410

 Score = 33.5 bits (75), Expect = 0.10
 Identities = 18/67 (26%), Positives = 32/67 (47%)

Query: 81  ASSKRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKK 140
           A  KR RT+  + +   LE  F         +   +A  L+L +  +++WF N+R K K+
Sbjct: 344 AEKKRKRTSIAAPEKRSLEAYFAIQPRPSSEKIAAIAEKLDLKKNVVRVWFCNQRQKQKR 403

Query: 141 DQKGKGM 147
            +   G+
Sbjct: 404 MKYSAGI 410



>gi|1709437|sp|Q03052|PO3F1_HUMAN   POU domain, class 3, transcription factor 1 (Octamer-binding
           transcription factor 6) (Oct-6) (POU-domain
           transcription factor SCIP)
          Length = 448

 Score = 33.5 bits (75), Expect = 0.10
 Identities = 23/75 (30%), Positives = 33/75 (44%), Gaps = 15/75 (20%)

Query: 116 MANLLNLTERQIKIWFQNRRMKYKK-------------DQKGKGMLTSSGG--QSPSRSP 160
           +A+ L L +  +++WF NRR K K+             D    G L   GG    PS  P
Sbjct: 369 LADSLQLEKEVVRVWFCNRRQKEKRMTPAAGAGHPPMDDVYAPGELGPGGGGASPPSAPP 428

Query: 161 VPPGAGGYLNSMHSL 175
            PP A  + +  H+L
Sbjct: 429 PPPPAALHHHHHHTL 443



>gi|20141754|sp|P41778|PBX1_MOUSE   Pre-B-cell leukemia transcription factor-1 (Homeobox protein PBX1)
 gi|730279|sp|P40424|PBX1_HUMAN   Pre-B-cell leukemia transcription factor-1 (Homeobox protein PBX1)
           (Homeobox protein PRL)
          Length = 430

 Score = 33.1 bits (74), Expect = 0.14
 Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 4/52 (7%)

Query: 94  QLVELEKEFHF----NRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKD 141
           Q  E+  E+ +    N Y     + E+A    +T  Q+  WF N+R++YKK+
Sbjct: 243 QATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKN 294



>gi|37999770|sp|Q9BYU1|PBX4_HUMAN   Pre-B-cell leukemia transcription factor-4 (Homeobox protein PBX4)
          Length = 330

 Score = 33.1 bits (74), Expect = 0.14
 Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 4/54 (7%)

Query: 92  SAQLVELEKEFHF----NRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKD 141
           S Q  E+  E+ +    N Y     + E+A    LT  Q+  WF N+R++YKK+
Sbjct: 174 SKQATEVLNEYFYSHLNNPYPSEEAKEELARKGGLTISQVSNWFGNKRIRYKKN 227



>gi|123408|sp|P28069|PIT1_HUMAN   Pituitary-specific positive transcription factor 1 (Pit-1) (Growth
           hormone factor 1) (GHF-1)
          Length = 291

 Score = 32.7 bits (73), Expect = 0.18
 Identities = 17/57 (29%), Positives = 28/57 (49%)

Query: 84  KRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKK 140
           ++ RT  + A    LE+ F           + MA  LNL +  +++WF NRR + K+
Sbjct: 215 RKRRTTISIAAKDALERHFGEQNKPSSQEIMRMAEELNLEKEVVRVWFCNRRQREKR 271



>gi|2833271|sp|Q15853|USF2_HUMAN   Upstream stimulatory factor 2 (Upstream transcription factor 2)
           (FOS-interacting protein) (FIP) (Major late
           transcription factor 2)
          Length = 346

 Score = 31.6 bits (70), Expect = 0.40
 Identities = 23/95 (24%), Positives = 38/95 (40%)

Query: 9   SSAIYGGYPYQAANGFAYNANQQPYPASAALGADGEYHRPACSLQSPSSAGGHPKAHELS 68
           S+A + G            A Q+P PA+A++        P   +Q+P S GG P A  +S
Sbjct: 103 STAAFAGGQQAVTQVGVDGAAQRPGPAAASVPPGPAAPFPLAVIQNPFSNGGSPAAEAVS 162

Query: 69  ESCAGDKSPPGQASSKRARTAYTSAQLVELEKEFH 103
                   P        A +  T+ Q ++   +F+
Sbjct: 163 GEARFAYFPASSVGDTTAVSVQTTDQSLQAGGQFY 197



>gi|2495302|sp|Q15319|PO43_HUMAN   POU domain, class 4, transcription factor 3 (Brain-specific
           homeobox/POU domain protein 3C) (Brn-3C)
          Length = 338

 Score = 31.2 bits (69), Expect = 0.52
 Identities = 16/57 (28%), Positives = 28/57 (49%)

Query: 84  KRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKK 140
           KR RT+  + +   LE  F         +   +A  L+L +  +++WF N+R K K+
Sbjct: 275 KRKRTSIAAPEKRSLEAYFAIQPRPSSEKIAAIAEKLDLKKNVVRVWFCNQRQKQKR 331



>gi|46396941|sp|Q8N196|SIX5_HUMAN   Homeobox protein SIX5 (DM locus-associated homeodomain protein)
          Length = 739

 Score = 31.2 bits (69), Expect = 0.52
 Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 9/55 (16%)

Query: 105 NRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKDQKGKGMLTSSGGQSPSRS 159
           NRY     +  +A L  L+  Q+  WF+NRR + +         T +GG +P +S
Sbjct: 223 NRYPTPDEKRRLATLTGLSLTQVSNWFKNRRQRDR---------TGAGGGAPCKS 268



>gi|28202258|sp|P20265|PO3F2_HUMAN   POU domain, class 3, transcription factor 2 (Nervous-system
           specific octamer-binding transcription factor N-Oct-3)
           (Brain-specific homeobox/POU domain protein 2) (Brain-2)
           (Brn-2 protein)
          Length = 443

 Score = 30.8 bits (68), Expect = 0.67
 Identities = 28/90 (31%), Positives = 43/90 (47%), Gaps = 14/90 (15%)

Query: 81  ASSKRARTAYTSAQL-VELEKEFHFNRYLC-RPRRVEMANL---LNLTERQIKIWFQNRR 135
           A+  R R   TS ++ V+   E HF +  C +P   E+ +L   L L +  +++WF NRR
Sbjct: 349 AAQGRKRKKRTSIEVSVKGALESHFLK--CPKPSAQEITSLADSLQLEKEVVRVWFCNRR 406

Query: 136 MKYKKDQKGKGMLTSSGGQSPSRSPVPPGA 165
            K K+       +T  GG  P    V  G+
Sbjct: 407 QKEKR-------MTPPGGTLPGAEDVYGGS 429



>gi|12230612|sp|Q9UIU6|SIX4_HUMAN   Homeobox protein SIX4 (Sine oculis homeobox homolog 4)
          Length = 760

 Score = 30.8 bits (68), Expect = 0.67
 Identities = 15/58 (25%), Positives = 28/58 (48%)

Query: 98  LEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKDQKGKGMLTSSGGQS 155
           L++ +  NRY     +  +A +  L+  Q+  WF+NRR + +   + +    S G  S
Sbjct: 217 LKELYKQNRYPSPAEKRHLAKITGLSLTQVSNWFKNRRQRDRNPSETQSKSESDGNPS 274



>gi|28201861|sp|Q9UKI9|PO2F3_HUMAN   POU domain, class 2, transcription factor 3 (Octamer-binding
           transcription factor 11) (Oct-11) (Transcription factor
           Skn-1) (PLA-1 protein)
          Length = 436

 Score = 30.8 bits (68), Expect = 0.67
 Identities = 16/57 (28%), Positives = 29/57 (50%)

Query: 84  KRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKK 140
           ++ RT+  +   + LEK F  N          +A  L++ +  +++WF NRR K K+
Sbjct: 282 RKKRTSIETNIRLTLEKRFQDNPKPSSEEISMIAEQLSMEKEVVRVWFCNRRQKEKR 338



>gi|2506535|sp|Q01851|PO4F1_HUMAN   POU domain, class 4, transcription factor 1 (Brain-specific
           homeobox/POU domain protein 3A) (Brn-3A) (Oct-T1)
           (Homeobox/POU domain protein RDC-1)
          Length = 423

 Score = 30.8 bits (68), Expect = 0.67
 Identities = 16/57 (28%), Positives = 28/57 (49%)

Query: 84  KRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKK 140
           KR RT+  + +   LE  F         +   +A  L+L +  +++WF N+R K K+
Sbjct: 360 KRKRTSIAAPEKRSLEAYFAVQPRPSSEKIAAIAEKLDLKKNVVRVWFCNQRQKQKR 416



>gi|8134810|sp|O60320|Y574_HUMAN   Hypothetical protein KIAA0574
          Length = 405

 Score = 30.8 bits (68), Expect = 0.67
 Identities = 23/81 (28%), Positives = 32/81 (39%), Gaps = 15/81 (18%)

Query: 15  GYPYQAANGFAYNANQQPYPASAALGADGEYHRPACSLQSPSSAGGHPKAHELSESCAGD 74
           G   Q   G    +   P   ++++  D   HRP+CS    +          LSE+    
Sbjct: 250 GSQVQPGPGHVSRSTSDPTLCTSSMAGDASSHRPSCSQDLEAG---------LSEAV--- 297

Query: 75  KSPPGQASSKRARTAYTSAQL 95
              PG AS  R+ TA   AQL
Sbjct: 298 ---PGSASMSRSATAACRAQL 315



>gi|2495290|sp|Q15475|SIX1_HUMAN   Homeobox protein SIX1 (Sine oculis homeobox homolog 1)
          Length = 284

 Score = 30.0 bits (66), Expect = 1.2
 Identities = 19/71 (26%), Positives = 32/71 (45%), Gaps = 4/71 (5%)

Query: 98  LEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYK----KDQKGKGMLTSSGG 153
           L + +  N Y     + E+A    LT  Q+  WF+NRR + +    K+++      SS  
Sbjct: 139 LREWYAHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDRAAEAKERENTENNNSSSN 198

Query: 154 QSPSRSPVPPG 164
           +    SP+  G
Sbjct: 199 KQNQLSPLEGG 209



>gi|2506534|sp|P20264|PO33_HUMAN   POU domain, class 3, transcription factor 3 (Brain-specific
           homeobox/POU domain protein 1) (Brain-1) (Brn-1 protein)
          Length = 500

 Score = 30.0 bits (66), Expect = 1.2
 Identities = 23/65 (35%), Positives = 35/65 (53%), Gaps = 7/65 (10%)

Query: 81  ASSKRARTAYTSAQL-VELEKEFHFNRYLC-RPRRVEMANL---LNLTERQIKIWFQNRR 135
           A+  R R   TS ++ V+   E HF +  C +P   E+ NL   L L +  +++WF NRR
Sbjct: 401 AAQGRKRKKRTSIEVSVKGALESHFLK--CPKPSAQEITNLADSLQLEKEVVRVWFCNRR 458

Query: 136 MKYKK 140
            K K+
Sbjct: 459 QKEKR 463



>gi|6094293|sp|O95343|SIX3_HUMAN   Homeobox protein SIX3 (Sine oculis homeobox homolog 3)
          Length = 332

 Score = 29.6 bits (65), Expect = 1.5
 Identities = 16/53 (30%), Positives = 25/53 (47%)

Query: 112 RRVEMANLLNLTERQIKIWFQNRRMKYKKDQKGKGMLTSSGGQSPSRSPVPPG 164
           ++ E+A    LT  Q+  WF+NRR + +       +   + G S  RS   PG
Sbjct: 235 KKRELAQATGLTPTQVGNWFKNRRQRDRAAAAKNRLQHQAIGPSGMRSLAEPG 287



>gi|1345629|sp|P49335|PO3F4_HUMAN   POU domain, class 3, transcription factor 4 (Brain-specific
           homeobox/POU domain protein 4) (Brain-4) (Brn-4)
          Length = 361

 Score = 29.6 bits (65), Expect = 1.5
 Identities = 26/81 (32%), Positives = 41/81 (50%), Gaps = 14/81 (17%)

Query: 81  ASSKRARTAYTSAQL-VELEKEFHFNRYLC-RPRRVEMANL---LNLTERQIKIWFQNRR 135
           A+  R R   TS ++ V+   E HF +  C +P   E+++L   L L +  +++WF NRR
Sbjct: 273 AAQGRKRKKRTSIEVSVKGVLETHFLK--CPKPAAQEISSLADSLQLEKEVVRVWFCNRR 330

Query: 136 MKYKKDQKGKGMLTSSGGQSP 156
            K K+       +T  G Q P
Sbjct: 331 QKEKR-------MTPPGDQQP 344



>gi|32699572|sp|Q8NG57|ELOA3_HUMAN   RNA polymerase II transcription factor SIII subunit A3 (Elongin A3)
           (EloA3) (Transcription elongation factor B polypeptide
           3C)
          Length = 546

 Score = 29.6 bits (65), Expect = 1.5
 Identities = 21/62 (33%), Positives = 26/62 (41%), Gaps = 2/62 (3%)

Query: 30  QQPYPASAALGADGEYHRPACSLQSPSSA-GGHPKAHELSESCAGDKSPPGQAS-SKRAR 87
           +QP    A     G      C  Q    A G H K H+ S   +  KSPP Q S S+R +
Sbjct: 191 EQPGRGHAHAAQGGPLLGQGCQGQPQGEAVGSHSKGHKSSRGASAQKSPPVQESQSERLQ 250

Query: 88  TA 89
            A
Sbjct: 251 AA 252



>gi|30173473|sp|Q96T25|ZIC5_HUMAN   Zinc finger protein ZIC 5 (Zinc finger protein of the cerebellum 5)
          Length = 639

 Score = 29.3 bits (64), Expect = 2.0
 Identities = 14/37 (37%), Positives = 17/37 (45%)

Query: 250 PHIQGSPVFVGGSYVEPMSNSGPALFGLTHLPHAASG 286
           PH  G  +   G+Y  P  + GPALF   H    A G
Sbjct: 211 PHSAGMFISASGTYAGPDGSGGPALFPALHDTPGAPG 247



>gi|12230598|sp|Q9NPC8|SIX2_HUMAN   Homeobox protein SIX2 (Sine oculis homeobox homolog 2)
          Length = 291

 Score = 29.3 bits (64), Expect = 2.0
 Identities = 19/70 (27%), Positives = 30/70 (42%), Gaps = 3/70 (4%)

Query: 98  LEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKDQKGKGMLTSSGGQSPS 157
           L + +  N Y     + E+A    LT  Q+  WF+NRR   ++D+  +     +   S S
Sbjct: 139 LREWYAHNPYPSPREKRELAEATGLTTTQVSNWFKNRR---QRDRAAEAKERENNENSNS 195

Query: 158 RSPVPPGAGG 167
            S  P    G
Sbjct: 196 NSHNPLNGSG 205



>gi|44888551|sp|Q9UKY1|ZHX1_HUMAN   Zinc fingers and homeoboxes protein 1
          Length = 873

 Score = 28.9 bits (63), Expect = 2.6
 Identities = 14/59 (23%), Positives = 27/59 (45%)

Query: 87  RTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKDQKGK 145
           R   T  QL EL+  +  N++      + +  +  LT+ +IK WF + R   +  +  +
Sbjct: 468 RAKKTKEQLAELKVSYLKNQFPHDSEIIRLMKITGLTKGEIKKWFSDTRYNQRNSKSNQ 526



 Score = 26.9 bits (58), Expect = 9.7
 Identities = 10/16 (62%), Positives = 13/16 (81%)

Query: 123 TERQIKIWFQNRRMKY 138
           TE QIKIWF  +R+K+
Sbjct: 324 TEEQIKIWFSAQRLKH 339



>gi|135304|sp|P17275|JUNB_HUMAN   Transcription factor jun-B
          Length = 347

 Score = 28.9 bits (63), Expect = 2.6
 Identities = 19/69 (27%), Positives = 26/69 (37%), Gaps = 2/69 (2%)

Query: 35  ASAALGADGEYHRPACSL--QSPSSAGGHPKAHELSESCAGDKSPPGQASSKRARTAYTS 92
           A AA+G    Y     S    +P  AGGHP    L    +  K  P      R+R A   
Sbjct: 198 AGAAVGTGSSYPTTTISYLPHAPPFAGGHPAQLGLGRGASTFKEEPQTVPEARSRDATPP 257

Query: 93  AQLVELEKE 101
              + +E +
Sbjct: 258 VSPINMEDQ 266



>gi|50401058|sp|Q8IU89|LSS3_HUMAN   LAG1 longevity assurance homolog 3
          Length = 383

 Score = 28.9 bits (63), Expect = 2.6
 Identities = 11/20 (55%), Positives = 16/20 (80%)

Query: 116 MANLLNLTERQIKIWFQNRR 135
           +A   NLTERQ++ WF++RR
Sbjct: 102 LAKKCNLTERQVERWFRSRR 121



>gi|3183005|sp|Q99502|EYA1_HUMAN   Eyes absent homolog 1
          Length = 592

 Score = 28.5 bits (62), Expect = 3.3
 Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 2/45 (4%)

Query: 1   MQKATYYDSSAIYGGYPYQAANGFAYNANQQPYPASAALGADGEY 45
           MQ +++  SS IY G      N   +N++QQ YP+  + G  G+Y
Sbjct: 184 MQGSSFTTSSGIYTGNN-SLTNSSGFNSSQQDYPSYPSFG-QGQY 226



>gi|27805750|sp|Q9GZN2|TGIF2_HUMAN   Homeobox protein TGIF2 (TGFB-induced factor 2) (5'-TG-3'
           interacting factor 2) (TGF(beta)-induced transcription
           factor 2)
          Length = 237

 Score = 28.5 bits (62), Expect = 3.3
 Identities = 26/109 (23%), Positives = 46/109 (42%), Gaps = 10/109 (9%)

Query: 67  LSESCAGDKSPPGQASSKRARTAYTSAQLVELEKEF----HFNRYLCRPRRVEMANLLNL 122
           +S+S  G+       + KR R      + V++ +++     +N Y     ++ ++   NL
Sbjct: 1   MSDSDLGEDEGLLSLAGKRKRRGNLPKESVKILRDWLYLHRYNAYPSEQEKLSLSGQTNL 60

Query: 123 TERQIKIWFQNRRMK-----YKKDQKGKGMLT-SSGGQSPSRSPVPPGA 165
           +  QI  WF N R +      +KD K     T S  G   S   +P G+
Sbjct: 61  SVLQICNWFINARRRLLPDMLRKDGKDPNQFTISRRGGKASDVALPRGS 109



>gi|729094|sp|P39880|CUTL1_HUMAN   CCAAT displacement protein (CDP) (Cut-like 1)
          Length = 1505

 Score = 27.7 bits (60), Expect = 5.7
 Identities = 18/80 (22%), Positives = 33/80 (41%)

Query: 76   SPPGQASSKRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRR 135
            SP  Q   K+ R      +   L++ +    Y       ++A  LNL    +  WF N R
Sbjct: 1237 SPQPQHQLKKPRVVLAPEEKEALKRAYQQKPYPSPKTIEDLATQLNLKTSTVINWFHNYR 1296

Query: 136  MKYKKDQKGKGMLTSSGGQS 155
             + +++   + +   S GQ+
Sbjct: 1297 SRIRRELFIEEIQAGSQGQA 1316



>gi|5921169|sp|O15265|ATX7_HUMAN   Ataxin-7 (Spinocerebellar ataxia type 7 protein)
          Length = 892

 Score = 27.7 bits (60), Expect = 5.7
 Identities = 15/38 (39%), Positives = 20/38 (52%)

Query: 252 IQGSPVFVGGSYVEPMSNSGPALFGLTHLPHAASGAMD 289
           +  SPV +  + + P S S PA     +   AASGAMD
Sbjct: 599 VSTSPVLLSSTCISPNSKSVPAHGTTLNAQPAASGAMD 636



>gi|28201858|sp|Q06416|PO5L_HUMAN   POU domain, class 5, transcription factor 1-like protein 1 (Octamer
           binding protein 3-like)
          Length = 359

 Score = 27.3 bits (59), Expect = 7.5
 Identities = 30/113 (26%), Positives = 45/113 (39%), Gaps = 16/113 (14%)

Query: 67  LSESCAGDKSPPGQASSKRARTAYTSAQLVELEKEFHFNRYLCRPRRV----EMANLLNL 122
           L E C   K+     + KR RT+  +     LE     N +L  P+       +A  L L
Sbjct: 217 LQEIC---KAETLMQARKRKRTSIENRVRGNLE-----NLFLQCPKPTLQISHIAQQLGL 268

Query: 123 TERQIKIWFQNRRMKYKKDQKGKGMLT--SSGGQSPSRSPV--PPGAGGYLNS 171
            +  +++WF NRR K K+            + G   S  PV  PP  G +  +
Sbjct: 269 EKDVVRVWFCNRRQKGKRSSSDYAQREDFEAAGSPFSGGPVSFPPAPGPHFGT 321



>gi|13124794|sp|P52756|RBM5_HUMAN   RNA-binding protein 5 (RNA binding motif protein 5) (Putative tumor
           suppressor LUCA15) (G15 protein)
          Length = 815

 Score = 27.3 bits (59), Expect = 7.5
 Identities = 29/86 (33%), Positives = 35/86 (40%), Gaps = 8/86 (9%)

Query: 4   ATY-YDSSAIYGGYPYQAANGFAYNANQQPYPASAA---LGADGEYHRPACSLQSPS-SA 58
           +TY YD S+   GY Y    G  Y+ N Q Y  S     L  DGE      + +S S   
Sbjct: 460 STYQYDESS---GYYYDPTTGLYYDPNSQYYYNSLTQQYLYWDGEKETYVPAAESSSHQQ 516

Query: 59  GGHPKAHELSESCAGDKSPPGQASSK 84
            G P A E  E     KS   Q  +K
Sbjct: 517 SGLPPAKEGKEKKEKPKSKTAQQIAK 542



>gi|41688792|sp|Q9BYP7|WNK3_HUMAN   Serine/threonine-protein kinase WNK3 (Protein kinase with no lysine
            3) (Protein kinase, lysine-deficient 3)
          Length = 1743

 Score = 27.3 bits (59), Expect = 7.5
 Identities = 17/75 (22%), Positives = 32/75 (42%)

Query: 53   QSPSSAGGHPKAHELSESCAGDKSPPGQASSKRARTAYTSAQLVELEKEFHFNRYLCRPR 112
            Q+P ++  + K   L E+C  +K  P Q  +  + +A     +  +  E  F        
Sbjct: 1341 QNPKTSFSYEKLQALQETCKENKGVPKQGDNFLSFSAACETDVSSVTPEKEFEETSATGS 1400

Query: 113  RVEMANLLNLTERQI 127
             ++  + L L ER+I
Sbjct: 1401 SMQSGSELLLKEREI 1415



>gi|28201859|sp|Q9BZV7|PO5M_HUMAN   POU domain, class 5, transcription factor 1-like protein 2
          Length = 359

 Score = 27.3 bits (59), Expect = 7.5
 Identities = 30/113 (26%), Positives = 45/113 (39%), Gaps = 16/113 (14%)

Query: 67  LSESCAGDKSPPGQASSKRARTAYTSAQLVELEKEFHFNRYLCRPRRV----EMANLLNL 122
           L E C   K+     + KR RT+  +     LE     N +L  P+       +A  L L
Sbjct: 217 LQEIC---KAETLMQARKRKRTSIENRVRGNLE-----NLFLQCPKPTLQISHIAQQLGL 268

Query: 123 TERQIKIWFQNRRMKYKKDQKGKGMLT--SSGGQSPSRSPV--PPGAGGYLNS 171
            +  +++WF NRR K K+            + G   S  PV  PP  G +  +
Sbjct: 269 EKDVVRVWFCNRRQKGKRSSSDYAQREDFEAAGSPFSGGPVSFPPAPGPHFGT 321



>gi|1705708|sp|P15391|CD19_HUMAN   B-lymphocyte antigen CD19 precursor (B-lymphocyte surface antigen
           B4) (Leu-12) (Differentiation antigen CD19)
          Length = 556

 Score = 27.3 bits (59), Expect = 7.5
 Identities = 20/79 (25%), Positives = 30/79 (37%), Gaps = 5/79 (6%)

Query: 27  NANQQPYPASAALGADGEYHRPACSLQSPSSAGGHPKAHELSESCAGDKSPPGQASSKRA 86
           N    P P S      G   R A  L   + + G+P +   ++   G +SPPG    +  
Sbjct: 350 NVLSLPTPTSGL----GRAQRWAAGLGGTAPSYGNPSSDVQADGALGSRSPPGVGPEEEE 405

Query: 87  RTAYTSAQLVELEKEFHFN 105
              Y      E + EF+ N
Sbjct: 406 GEGYEEPDSEE-DSEFYEN 423



>gi|20139982|sp|O75635|SPB7_HUMAN   Megsin (TP55) (Serpin B7)
          Length = 380

 Score = 26.9 bits (58), Expect = 9.7
 Identities = 15/45 (33%), Positives = 22/45 (48%)

Query: 107 YLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKDQKGKGMLTSS 151
           Y  +  RV+  N L  T R I  W +N      K+  G+G ++SS
Sbjct: 122 YDAKVERVDFTNHLEDTRRNINKWVENETHGKIKNVIGEGGISSS 166






  Database: Non-redundant SwissProt sequences
    Posted date:  Mar 15, 2005 10:11 AM
  Number of letters in database: 60,490,055
  Number of sequences in database:  164,271
  
Lambda     K      H
   0.313    0.130    0.396 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 793,594
Number of Sequences: 164271
Number of extensions: 36357
Number of successful extensions: 134
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 102
Number of HSP's gapped (non-prelim): 35
length of query: 335
length of database: 6,424,444
effective HSP length: 96
effective length of query: 239
effective length of database: 5,281,564
effective search space: 1262293796
effective search space used: 1262293796
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 58 (26.9 bits)