BLASTP 2.2.10 [Oct-19-2004]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

RID: 1111133057-18221-22585453963.BLASTQ2

Query= 
         (140 letters)


Database: Non-redundant SwissProt sequences 
           164,271 sequences; 60,490,055 total letters

 
If you have any problems or questions with the results of this search 
please refer to the BLAST FAQs

Taxonomy reports

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|20138144|sp|O15347|HMG4_HUMAN  High mobility group protei...   223   1e-59 
gi|20138434|sp|Q9UJ13|HM4L_HUMAN  High mobility group protei...   187   8e-49 
gi|123369|sp|P09429|HMG1_HUMAN  High mobility group protein ...   179   4e-46 
gi|123374|sp|P26583|HMG2_HUMAN  High mobility group protein ...   177   1e-45 
gi|20138433|sp|Q9UGV6|HM1X_HUMAN  High mobility group protei...   162   4e-41 
gi|13878931|sp|P23497|SP100_HUMAN  Nuclear autoantigen Sp-10...   132   3e-32 
gi|730840|sp|Q08945|SSRP_HUMAN  Structure-specific recogniti...    53   4e-08 
gi|20532269|sp|O94993|SOX30_HUMAN  Transcription factor SOX-30     48   1e-06 
gi|1351096|sp|P48436|SOX9_HUMAN  Transcription factor SOX-9        46   4e-06 
gi|6175075|sp|P56693|SOX10_HUMAN  Transcription factor SOX-10      45   6e-06 
gi|136652|sp|P17480|UBF1_HUMAN  Nucleolar transcription fact...    45   6e-06 
gi|57012878|sp|Q9P0W2|HM20B_HUMAN  SWI/SNF-related matrix-as...    45   8e-06 
gi|1351142|sp|P35716|SOX11_HUMAN  Transcription factor SOX-11      45   8e-06 
gi|6831689|sp|O95416|SOX14_HUMAN  Transcription factor SOX-14      45   1e-05 
gi|6831690|sp|Q9Y651|SOX21_HUMAN  Transcription factor SOX-2...    44   1e-05 
gi|10720294|sp|P57073|SOX8_HUMAN  Transcription factor SOX-8       44   1e-05 
gi|6094381|sp|O60248|SOX15_HUMAN  SOX-15 protein (SOX-20 pro...    44   1e-05 
gi|548952|sp|Q06945|SOX4_HUMAN  Transcription factor SOX-4         44   2e-05 
gi|12644232|sp|P35713|SOX18_HUMAN  Transcription factor SOX-18     44   2e-05 
gi|1351091|sp|P48431|SOX2_HUMAN  Transcription factor SOX-2        43   3e-05 
gi|48429228|sp|P41225|SOX3_HUMAN  Transcription factor SOX-3       43   3e-05 
gi|3024656|sp|O15370|SX12_HUMAN  SOX-12 protein (SOX-22 prot...    43   3e-05 
gi|20532272|sp|Q9BT81|SOX7_HUMAN  Transcription factor SOX-7       42   5e-05 
gi|2811002|sp|O00570|SOX1_HUMAN  SOX-1 protein                     42   5e-05 
gi|548983|sp|Q05066|SRY_HUMAN  Sex-determining region Y prot...    42   7e-05 
gi|20178338|sp|P35712|SOX6_HUMAN  Transcription factor SOX-6       42   7e-05 
gi|33112349|sp|O94842|LCP1_HUMAN  Epidermal Langerhans cell ...    42   9e-05 
gi|1709683|sp|P54277|PMS1_HUMAN  PMS1 protein homolog 1 (DNA...    42   9e-05 
gi|23822216|sp|Q9H6I2|SOX17_HUMAN  Transcription factor SOX-17     42   9e-05 
gi|12643902|sp|Q9UN79|SX13_HUMAN  SOX-13 protein (Type 1 dia...    41   1e-04 
gi|30179883|sp|P35711|SOX5_HUMAN  Transcription factor SOX-5       40   3e-04 
gi|24211591|sp|Q96NM4|CTA0_HUMAN  Protein C20orf100                40   3e-04 
gi|417324|sp|Q00059|TFAM_HUMAN  Transcription factor A, mito...    38   0.001 
gi|2495717|sp|Q12766|SMF_HUMAN  SMF protein                        36   0.005 
gi|12643342|sp|Q9UGU5|HM21_HUMAN  High-mobility group protei...    35   0.011 
gi|29337134|sp|Q9HCS4|TF7L1_HUMAN  Transcription factor 7-li...    32   0.071 
gi|14548264|sp|O75326|SEM7A_HUMAN  Semaphorin 7A precursor (...    28   1.3   
gi|1709851|sp|P23246|SFPQ_HUMAN  Splicing factor, proline-an...    27   1.8   
gi|37999866|sp|Q8NEZ4|MLL3_HUMAN  Myeloid/lymphoid or mixed-...    27   2.3   
gi|5921744|sp|Q14839|CHD4_HUMAN  Chromodomain helicase-DNA-b...    26   3.9   
gi|37999860|sp|O14686|MLL2_HUMAN  Myeloid/lymphoid or mixed-...    26   5.1   
gi|2498589|sp|Q13330|MTA1_HUMAN  Metastasis-associated prote...    25   6.7   
gi|51316434|sp|Q86WC4|OTM1_HUMAN  Osteopetrosis associated t...    25   8.7   


Alignments

>gi|20138144|sp|O15347|HMG4_HUMAN   High mobility group protein 4 (HMG-4) (High mobility group protein
           2a) (HMG-2a)
          Length = 200

 Score =  223 bits (569), Expect = 1e-59
 Identities = 109/139 (78%), Positives = 117/139 (84%)

Query: 2   SAYAFYVQTCREEHRKKNPEVPVNFAEFSKKCSERWKTMSGKDKSKFDEITKADKMRYDQ 61
           SAYAF+VQTCREEH+KKNPEVPVNFAEFSKKCSERWKT+SGK+KSKFDE+ KADK+RYD+
Sbjct: 14  SAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTVSGKEKSKFDEMAKADKVRYDR 73

Query: 62  EMXXXXXXXXXXXXXXXNASKRPLSGFFLFCSELGPKIKSTNPTISIRDMAKKLGEMWNN 121
           EM               NA KRP SGFFLFCSE  PKIKSTNP ISI D+AKKLGEMWNN
Sbjct: 74  EMKDYGPAKGGKKKKDPNAPKRPPSGFFLFCSEFRPKIKSTNPGISIGDVAKKLGEMWNN 133

Query: 122 LNDSEKQPYITKAAKLKEK 140
           LNDSEKQPYITKAAKLKEK
Sbjct: 134 LNDSEKQPYITKAAKLKEK 152



 Score = 27.7 bits (60), Expect = 1.3
 Identities = 15/61 (24%), Positives = 29/61 (47%), Gaps = 4/61 (6%)

Query: 2   SAYAFYVQTCREEHRKKNPEVPVNFAEFSKKCSERWKTMSGKDKSKFDEITKADKMRYDQ 61
           S +  +    R + +  NP + +   + +KK  E W  ++  +K  +  ITKA K++   
Sbjct: 98  SGFFLFCSEFRPKIKSTNPGISIG--DVAKKLGEMWNNLNDSEKQPY--ITKAAKLKEKY 153

Query: 62  E 62
           E
Sbjct: 154 E 154



>gi|20138434|sp|Q9UJ13|HM4L_HUMAN   High mobility group protein 4-like (HMG-4L)
          Length = 183

 Score =  187 bits (476), Expect = 8e-49
 Identities = 99/139 (71%), Positives = 107/139 (76%), Gaps = 11/139 (7%)

Query: 1   MSAYAFYVQTCREEHRKKNPEVPVNFAEFSKKCSERWKTMSGKDKSKFDEITKADKMRYD 60
           MSA+AF+VQTCREEH KKNPEVPVNFAEFSKKCSERWKTMSGK+K        ADK+  D
Sbjct: 13  MSAFAFFVQTCREEH-KKNPEVPVNFAEFSKKCSERWKTMSGKEK--------ADKVHCD 63

Query: 61  QEMXXXXXXXXXXXXXXXNASKRPLSGFFLFCSELGPKIKSTNPTISIRDMAKKLGEMWN 120
           +EM               NA KRPLSGFFLFCSE  PKIKSTNP ISI D+AKKLGEMWN
Sbjct: 64  REMKDYGPAKGGKNDP--NAPKRPLSGFFLFCSEFCPKIKSTNPGISIGDVAKKLGEMWN 121

Query: 121 NLNDSEKQPYITKAAKLKE 139
           NLNDSEKQPY+TK AKLK+
Sbjct: 122 NLNDSEKQPYVTKVAKLKK 140



>gi|123369|sp|P09429|HMG1_HUMAN   High mobility group protein 1 (HMG-1)
          Length = 215

 Score =  179 bits (453), Expect = 4e-46
 Identities = 88/142 (61%), Positives = 104/142 (73%), Gaps = 2/142 (1%)

Query: 1   MSAYAFYVQTCREEHRKKNPEVPVNFAEFSKKCSERWKTMSGKDKSKFDEITKADKMRYD 60
           MS+YAF+VQTCREEH+KK+P+  VNF+EFSKKCSERWKTMS K+K KF+++ KADK RY+
Sbjct: 13  MSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYE 72

Query: 61  QEMXXXX--XXXXXXXXXXXNASKRPLSGFFLFCSELGPKIKSTNPTISIRDMAKKLGEM 118
           +EM                 NA KRP S FFLFCSE  PKIK  +P +SI D+AKKLGEM
Sbjct: 73  REMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEM 132

Query: 119 WNNLNDSEKQPYITKAAKLKEK 140
           WNN    +KQPY  KAAKLKEK
Sbjct: 133 WNNTAADDKQPYEKKAAKLKEK 154



 Score = 26.9 bits (58), Expect = 2.3
 Identities = 13/54 (24%), Positives = 26/54 (48%), Gaps = 1/54 (1%)

Query: 11  CREEHRKKNPEVP-VNFAEFSKKCSERWKTMSGKDKSKFDEITKADKMRYDQEM 63
           C E   K   E P ++  + +KK  E W   +  DK  +++     K +Y++++
Sbjct: 106 CSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDI 159



>gi|123374|sp|P26583|HMG2_HUMAN   High mobility group protein 2 (HMG-2)
          Length = 209

 Score =  177 bits (448), Expect = 1e-45
 Identities = 89/142 (62%), Positives = 105/142 (73%), Gaps = 2/142 (1%)

Query: 1   MSAYAFYVQTCREEHRKKNPEVPVNFAEFSKKCSERWKTMSGKDKSKFDEITKADKMRYD 60
           MS+YAF+VQTCREEH+KK+P+  VNFAEFSKKCSERWKTMS K+KSKF+++ K+DK RYD
Sbjct: 13  MSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDMAKSDKARYD 72

Query: 61  QEMXXXX--XXXXXXXXXXXNASKRPLSGFFLFCSELGPKIKSTNPTISIRDMAKKLGEM 118
           +EM                 NA KRP S FFLFCSE  PKIKS +P +SI D AKKLGEM
Sbjct: 73  REMKNYVPPKGDKKGKKKDPNAPKRPPSAFFLFCSEHRPKIKSEHPGLSIGDTAKKLGEM 132

Query: 119 WNNLNDSEKQPYITKAAKLKEK 140
           W+  +  +KQPY  KAAKLKEK
Sbjct: 133 WSEQSAKDKQPYEQKAAKLKEK 154



 Score = 31.6 bits (70), Expect = 0.093
 Identities = 15/54 (27%), Positives = 27/54 (50%), Gaps = 1/54 (1%)

Query: 11  CREEHRKKNPEVP-VNFAEFSKKCSERWKTMSGKDKSKFDEITKADKMRYDQEM 63
           C E   K   E P ++  + +KK  E W   S KDK  +++     K +Y++++
Sbjct: 106 CSEHRPKIKSEHPGLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAKLKEKYEKDI 159



>gi|20138433|sp|Q9UGV6|HM1X_HUMAN   High mobility group protein 1-like 10 (HMG-1L10)
          Length = 211

 Score =  162 bits (410), Expect = 4e-41
 Identities = 81/142 (57%), Positives = 98/142 (69%), Gaps = 2/142 (1%)

Query: 1   MSAYAFYVQTCREEHRKKNPEVPVNFAEFSKKCSERWKTMSGKDKSKFDEITKADKMRYD 60
           MS++AF+ QTCRE H+KK+P+  VN +EFSKKCSERWKTMS K+K KF+++ KADK  Y+
Sbjct: 13  MSSHAFFGQTCREAHKKKHPDASVNLSEFSKKCSERWKTMSAKEKGKFEDMAKADKAHYE 72

Query: 61  QEMXXXX--XXXXXXXXXXXNASKRPLSGFFLFCSELGPKIKSTNPTISIRDMAKKLGEM 118
           +EM                 NA KR  S FFLFCS   PKIK  +P +SI D+AKKLGEM
Sbjct: 73  REMKTYIPPKGETKKKFKDPNAPKRTPSAFFLFCSAYRPKIKGEHPGLSIGDVAKKLGEM 132

Query: 119 WNNLNDSEKQPYITKAAKLKEK 140
           WNN    +KQPY  KAAKLKEK
Sbjct: 133 WNNTAADDKQPYEKKAAKLKEK 154



 Score = 26.9 bits (58), Expect = 2.3
 Identities = 12/62 (19%), Positives = 31/62 (50%), Gaps = 2/62 (3%)

Query: 2   SAYAFYVQTCREEHRKKNPEVPVNFAEFSKKCSERWKTMSGKDKSKFDEITKADKMRYDQ 61
           SA+  +    R + + ++P + +   + +KK  E W   +  DK  +++     K +Y++
Sbjct: 100 SAFFLFCSAYRPKIKGEHPGLSIG--DVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEK 157

Query: 62  EM 63
           ++
Sbjct: 158 DI 159



>gi|13878931|sp|P23497|SP100_HUMAN   Nuclear autoantigen Sp-100 (Speckled 100 kDa) (Nuclear
           dot-associated Sp100 protein) (Lysp100b)
          Length = 879

 Score =  132 bits (333), Expect = 3e-32
 Identities = 68/130 (52%), Positives = 83/130 (63%), Gaps = 2/130 (1%)

Query: 13  EEHRKKNPEVPVNFAEFSKKCSERWKTMSGKDKSKFDEITKADKMRYDQEMXXXX--XXX 70
           EEH+KKNP+  V F+EF KKCSE WKT+  K+K KF+++ KADK  Y++EM         
Sbjct: 699 EEHKKKNPDASVKFSEFLKKCSETWKTIFAKEKGKFEDMAKADKAHYEREMKTYIPPKGE 758

Query: 71  XXXXXXXXNASKRPLSGFFLFCSELGPKIKSTNPTISIRDMAKKLGEMWNNLNDSEKQPY 130
                   NA KRP   FFLFCSE  PKIK  +P +SI D+ KKL  MWNN   ++KQ Y
Sbjct: 759 KKKKFKDPNAPKRPPLAFFLFCSEYRPKIKGEHPGLSIDDVVKKLAGMWNNTAAADKQFY 818

Query: 131 ITKAAKLKEK 140
             KAAKLKEK
Sbjct: 819 EKKAAKLKEK 828



>gi|730840|sp|Q08945|SSRP_HUMAN   Structure-specific recognition protein 1 (SSRP1) (Recombination
           signal sequence recognition protein) (T160)
           (Chromatin-specific transcription elongation factor 80
           KDA subunit) (FACT 80 KDA subunit)
          Length = 709

 Score = 52.8 bits (125), Expect = 4e-08
 Identities = 24/56 (42%), Positives = 37/56 (66%)

Query: 79  NASKRPLSGFFLFCSELGPKIKSTNPTISIRDMAKKLGEMWNNLNDSEKQPYITKA 134
           NA KRP+S + L+ +    KIKS +P ISI D++KK GE+W  ++  +K+ +  KA
Sbjct: 545 NAPKRPMSAYMLWLNASREKIKSDHPGISITDLSKKAGEIWKGMSKEKKEEWDRKA 600



 Score = 38.9 bits (89), Expect = 6e-04
 Identities = 22/62 (35%), Positives = 34/62 (54%), Gaps = 4/62 (6%)

Query: 1   MSAYAFYVQTCREEHRKKNPEVPVNFAEFSKKCSERWKTMSGKDKSKFDEITKADKMRYD 60
           MSAY  ++   RE+ +  +P + +   + SKK  E WK MS + K ++D   KA+  R D
Sbjct: 551 MSAYMLWLNASREKIKSDHPGISIT--DLSKKAGEIWKGMSKEKKEEWDR--KAEDARRD 606

Query: 61  QE 62
            E
Sbjct: 607 YE 608



>gi|20532269|sp|O94993|SOX30_HUMAN   Transcription factor SOX-30
          Length = 753

 Score = 48.1 bits (113), Expect = 1e-06
 Identities = 20/59 (33%), Positives = 36/59 (61%)

Query: 82  KRPLSGFFLFCSELGPKIKSTNPTISIRDMAKKLGEMWNNLNDSEKQPYITKAAKLKEK 140
           KRP++ F ++     P +   NP  +  +++ +LG  WN L++ +K+PY  +A K+KEK
Sbjct: 338 KRPMNAFMVWARIHRPALAKANPAANNAEISVQLGLEWNKLSEEQKKPYYDEAQKIKEK 396



>gi|1351096|sp|P48436|SOX9_HUMAN   Transcription factor SOX-9
          Length = 509

 Score = 46.2 bits (108), Expect = 4e-06
 Identities = 18/57 (31%), Positives = 36/57 (63%)

Query: 82  KRPLSGFFLFCSELGPKIKSTNPTISIRDMAKKLGEMWNNLNDSEKQPYITKAAKLK 138
           KRP++ F ++      K+    P +   +++K LG++W  LN+SEK+P++ +A +L+
Sbjct: 106 KRPMNAFMVWAQAARRKLADQYPHLHNAELSKTLGKLWRLLNESEKRPFVEEAERLR 162



>gi|6175075|sp|P56693|SOX10_HUMAN   Transcription factor SOX-10
          Length = 466

 Score = 45.4 bits (106), Expect = 6e-06
 Identities = 18/57 (31%), Positives = 36/57 (63%)

Query: 82  KRPLSGFFLFCSELGPKIKSTNPTISIRDMAKKLGEMWNNLNDSEKQPYITKAAKLK 138
           KRP++ F ++      K+    P +   +++K LG++W  LN+S+K+P+I +A +L+
Sbjct: 105 KRPMNAFMVWAQAARRKLADQYPHLHNAELSKTLGKLWRLLNESDKRPFIEEAERLR 161



 Score = 28.1 bits (61), Expect = 1.0
 Identities = 15/62 (24%), Positives = 32/62 (51%), Gaps = 2/62 (3%)

Query: 1   MSAYAFYVQTCREEHRKKNPEVPVNFAEFSKKCSERWKTMSGKDKSKFDEITKADKMRYD 60
           M+A+  + Q  R +   + P +  + AE SK   + W+ ++  DK  F E  +  +M++ 
Sbjct: 108 MNAFMVWAQAARRKLADQYPHL--HNAELSKTLGKLWRLLNESDKRPFIEEAERLRMQHK 165

Query: 61  QE 62
           ++
Sbjct: 166 KD 167



>gi|136652|sp|P17480|UBF1_HUMAN   Nucleolar transcription factor 1 (Upstream binding factor 1)
           (UBF-1) (Autoantigen NOR-90)
          Length = 764

 Score = 45.4 bits (106), Expect = 6e-06
 Identities = 29/137 (21%), Positives = 51/137 (37%), Gaps = 31/137 (22%)

Query: 33  CSERWKTMSGKDKSKFDEITKADKMRYDQEMXXXXXX----------------------- 69
           CS++WK +S K+K  + +     K  Y+ E+                             
Sbjct: 328 CSQQWKLLSQKEKDAYHKKCDQKKKDYEVELLRFLESLPEEEQQRVLGEEKMLNINKKQA 387

Query: 70  --------XXXXXXXXXNASKRPLSGFFLFCSELGPKIKSTNPTISIRDMAKKLGEMWNN 121
                               KRP+S  F+F  E   +++   P +S  ++ + L  MWN+
Sbjct: 388 TSPASKKPAQEGGKGGSEKPKRPVSAMFIFSEEKRRQLQEERPELSESELTRLLARMWND 447

Query: 122 LNDSEKQPYITKAAKLK 138
           L++ +K  Y  + A LK
Sbjct: 448 LSEKKKAKYKAREAALK 464



 Score = 33.5 bits (75), Expect = 0.025
 Identities = 23/142 (16%), Positives = 65/142 (45%), Gaps = 4/142 (2%)

Query: 1   MSAYAFYVQTCREEHRKKNPEVPVNFAEFSKKCSERWKTMSGKDKSKFDEITKADKMRYD 60
           ++ Y  +    R ++ K +PE+  +  + +K  S+++K +  K K K+ +  + +K  ++
Sbjct: 116 LTPYFRFFMEKRAKYAKLHPEM--SNLDLTKILSKKYKELPEKKKMKYIQDFQREKQEFE 173

Query: 61  QEMXXXXXXXXXXXXXXXNAS--KRPLSGFFLFCSELGPKIKSTNPTISIRDMAKKLGEM 118
           + +                +   ++P +   L+ +          P  + +++   LG+ 
Sbjct: 174 RNLARFREDHPDLIQNAKKSDIPEKPKTPQQLWYTHEKKVYLKVRPDATTKEVKDSLGKQ 233

Query: 119 WNNLNDSEKQPYITKAAKLKEK 140
           W+ L+D ++  +I KA + +++
Sbjct: 234 WSQLSDKKRLKWIHKALEQRKE 255



 Score = 32.3 bits (72), Expect = 0.055
 Identities = 22/109 (20%), Positives = 47/109 (43%), Gaps = 8/109 (7%)

Query: 37  WKTMSGKDKSKFDEITKADKMRYDQEMXX-----XXXXXXXXXXXXXNASKRPLSGFFLF 91
           W  M  K+K  + +    D+ RY++E+                       K P++G+  F
Sbjct: 519 WNNMEKKEKLMWIKKAAEDQKRYERELSEMRAPPAATNSSKKMKFQGEPKKPPMNGYQKF 578

Query: 92  CSELGPKIKSTNPTISIRDMAKKLGEMWNNLNDSEKQPYITKAAKLKEK 140
             EL    +  +  + +++   ++G  W  ++ S+K+ Y  K A+ ++K
Sbjct: 579 SQELLSNGELNH--LPLKERMVEIGSRWQRISQSQKEHY-KKLAEEQQK 624



>gi|57012878|sp|Q9P0W2|HM20B_HUMAN   SWI/SNF-related matrix-associated actin-dependent regulator of
           chromatin subfamily E member 1-related (SMARCE1-related
           protein) (HMG domain protein HMG20B) (Structural
           DNA-binding protein BRAF35) (BRCA2-associated factor 35)
           (Sox-like transcriptional factor)
          Length = 317

 Score = 45.1 bits (105), Expect = 8e-06
 Identities = 19/62 (30%), Positives = 37/62 (59%)

Query: 79  NASKRPLSGFFLFCSELGPKIKSTNPTISIRDMAKKLGEMWNNLNDSEKQPYITKAAKLK 138
           N  K P++G+  F +E   +I++ +P +   ++ K LG  W+ L  +EKQ Y+ +A + K
Sbjct: 68  NGPKAPVTGYVRFLNERREQIRTRHPDLPFPEITKMLGAEWSKLQPTEKQRYLDEAEREK 127

Query: 139 EK 140
           ++
Sbjct: 128 QQ 129



>gi|1351142|sp|P35716|SOX11_HUMAN   Transcription factor SOX-11
          Length = 441

 Score = 45.1 bits (105), Expect = 8e-06
 Identities = 21/59 (35%), Positives = 36/59 (61%)

Query: 82  KRPLSGFFLFCSELGPKIKSTNPTISIRDMAKKLGEMWNNLNDSEKQPYITKAAKLKEK 140
           KRP++ F ++      KI   +P +   +++K+LG+ W  L DSEK P+I +A +L+ K
Sbjct: 50  KRPMNAFMVWSKIERRKIMEQSPDMHNAEISKRLGKRWKMLKDSEKIPFIREAERLRLK 108



 Score = 30.4 bits (67), Expect = 0.21
 Identities = 17/58 (29%), Positives = 35/58 (60%), Gaps = 4/58 (6%)

Query: 1   MSAYAFYVQTCREEHRKKNPEVPVNFAEFSKKCSERWKTMSGKDKSKFDEITKADKMR 58
           M+A+  + +  R +  +++P++  + AE SK+  +RWK +  KD  K   I +A+++R
Sbjct: 53  MNAFMVWSKIERRKIMEQSPDM--HNAEISKRLGKRWKML--KDSEKIPFIREAERLR 106



>gi|6831689|sp|O95416|SOX14_HUMAN   Transcription factor SOX-14
          Length = 240

 Score = 44.7 bits (104), Expect = 1e-05
 Identities = 19/57 (33%), Positives = 36/57 (63%)

Query: 82  KRPLSGFFLFCSELGPKIKSTNPTISIRDMAKKLGEMWNNLNDSEKQPYITKAAKLK 138
           KRP++ F ++      K+   NP +   +++K+LG  W  L+++EK+PYI +A +L+
Sbjct: 9   KRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGAEWKLLSEAEKRPYIDEAKRLR 65



 Score = 26.2 bits (56), Expect = 3.9
 Identities = 15/58 (25%), Positives = 33/58 (56%), Gaps = 4/58 (6%)

Query: 1  MSAYAFYVQTCREEHRKKNPEVPVNFAEFSKKCSERWKTMSGKDKSKFDEITKADKMR 58
          M+A+  + +  R +  ++NP++  + +E SK+    WK +S  +K  +  I +A ++R
Sbjct: 12 MNAFMVWSRGQRRKMAQENPKM--HNSEISKRLGAEWKLLSEAEKRPY--IDEAKRLR 65



>gi|6831690|sp|Q9Y651|SOX21_HUMAN   Transcription factor SOX-21 (SOX-A)
          Length = 276

 Score = 44.3 bits (103), Expect = 1e-05
 Identities = 19/57 (33%), Positives = 35/57 (61%)

Query: 82  KRPLSGFFLFCSELGPKIKSTNPTISIRDMAKKLGEMWNNLNDSEKQPYITKAAKLK 138
           KRP++ F ++      K+   NP +   +++K+LG  W  L +SEK+P+I +A +L+
Sbjct: 9   KRPMNAFMVWSRAQRRKMAQENPKMHNSEISKRLGAEWKLLTESEKRPFIDEAKRLR 65



 Score = 27.3 bits (59), Expect = 1.8
 Identities = 15/58 (25%), Positives = 33/58 (56%), Gaps = 4/58 (6%)

Query: 1  MSAYAFYVQTCREEHRKKNPEVPVNFAEFSKKCSERWKTMSGKDKSKFDEITKADKMR 58
          M+A+  + +  R +  ++NP++  + +E SK+    WK ++  +K  F  I +A ++R
Sbjct: 12 MNAFMVWSRAQRRKMAQENPKM--HNSEISKRLGAEWKLLTESEKRPF--IDEAKRLR 65



>gi|10720294|sp|P57073|SOX8_HUMAN   Transcription factor SOX-8
          Length = 446

 Score = 44.3 bits (103), Expect = 1e-05
 Identities = 17/57 (29%), Positives = 36/57 (63%)

Query: 82  KRPLSGFFLFCSELGPKIKSTNPTISIRDMAKKLGEMWNNLNDSEKQPYITKAAKLK 138
           KRP++ F ++      K+    P +   +++K LG++W  L++SEK+P++ +A +L+
Sbjct: 103 KRPMNAFMVWAQAARRKLADQYPHLHNAELSKTLGKLWRLLSESEKRPFVEEAERLR 159



>gi|6094381|sp|O60248|SOX15_HUMAN   SOX-15 protein (SOX-20 protein) (SOX-12 protein)
          Length = 233

 Score = 44.3 bits (103), Expect = 1e-05
 Identities = 17/59 (28%), Positives = 37/59 (62%)

Query: 82  KRPLSGFFLFCSELGPKIKSTNPTISIRDMAKKLGEMWNNLNDSEKQPYITKAAKLKEK 140
           KRP++ F ++ S    ++   NP +   +++K+LG  W  L++ EK+P++ +A +L+ +
Sbjct: 50  KRPMNAFMVWSSAQRRQMAQQNPKMHNSEISKRLGAQWKLLDEDEKRPFVEEAKRLRAR 108



 Score = 28.5 bits (62), Expect = 0.79
 Identities = 15/59 (25%), Positives = 31/59 (52%), Gaps = 2/59 (3%)

Query: 1   MSAYAFYVQTCREEHRKKNPEVPVNFAEFSKKCSERWKTMSGKDKSKFDEITKADKMRY 59
           M+A+  +    R +  ++NP++  + +E SK+   +WK +   +K  F E  K  + R+
Sbjct: 53  MNAFMVWSSAQRRQMAQQNPKM--HNSEISKRLGAQWKLLDEDEKRPFVEEAKRLRARH 109



>gi|548952|sp|Q06945|SOX4_HUMAN   Transcription factor SOX-4
          Length = 474

 Score = 43.5 bits (101), Expect = 2e-05
 Identities = 20/59 (33%), Positives = 36/59 (61%)

Query: 82  KRPLSGFFLFCSELGPKIKSTNPTISIRDMAKKLGEMWNNLNDSEKQPYITKAAKLKEK 140
           KRP++ F ++      KI   +P +   +++K+LG+ W  L DS+K P+I +A +L+ K
Sbjct: 60  KRPMNAFMVWSQIERRKIMEQSPDMHNAEISKRLGKRWKLLKDSDKIPFIREAERLRLK 118



 Score = 32.3 bits (72), Expect = 0.055
 Identities = 18/58 (31%), Positives = 35/58 (60%), Gaps = 4/58 (6%)

Query: 1   MSAYAFYVQTCREEHRKKNPEVPVNFAEFSKKCSERWKTMSGKDKSKFDEITKADKMR 58
           M+A+  + Q  R +  +++P++  + AE SK+  +RWK +   DK  F  I +A+++R
Sbjct: 63  MNAFMVWSQIERRKIMEQSPDM--HNAEISKRLGKRWKLLKDSDKIPF--IREAERLR 116



>gi|12644232|sp|P35713|SOX18_HUMAN   Transcription factor SOX-18
          Length = 384

 Score = 43.5 bits (101), Expect = 2e-05
 Identities = 16/57 (28%), Positives = 35/57 (61%)

Query: 82  KRPLSGFFLFCSELGPKIKSTNPTISIRDMAKKLGEMWNNLNDSEKQPYITKAAKLK 138
           +RP++ F ++  +   ++   NP +    ++K LG+ W  LN +EK+P++ +A +L+
Sbjct: 86  RRPMNAFMVWAKDERKRLAQQNPDLHNAVLSKMLGKAWKELNAAEKRPFVEEAERLR 142



>gi|1351091|sp|P48431|SOX2_HUMAN   Transcription factor SOX-2
          Length = 317

 Score = 43.1 bits (100), Expect = 3e-05
 Identities = 18/57 (31%), Positives = 36/57 (63%)

Query: 82  KRPLSGFFLFCSELGPKIKSTNPTISIRDMAKKLGEMWNNLNDSEKQPYITKAAKLK 138
           KRP++ F ++      K+   NP +   +++K+LG  W  L+++EK+P+I +A +L+
Sbjct: 42  KRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGAEWKLLSETEKRPFIDEAKRLR 98



 Score = 27.3 bits (59), Expect = 1.8
 Identities = 16/58 (27%), Positives = 33/58 (56%), Gaps = 4/58 (6%)

Query: 1  MSAYAFYVQTCREEHRKKNPEVPVNFAEFSKKCSERWKTMSGKDKSKFDEITKADKMR 58
          M+A+  + +  R +  ++NP++  + +E SK+    WK +S  +K  F  I +A ++R
Sbjct: 45 MNAFMVWSRGQRRKMAQENPKM--HNSEISKRLGAEWKLLSETEKRPF--IDEAKRLR 98



>gi|48429228|sp|P41225|SOX3_HUMAN   Transcription factor SOX-3
          Length = 446

 Score = 43.1 bits (100), Expect = 3e-05
 Identities = 19/57 (33%), Positives = 35/57 (61%)

Query: 82  KRPLSGFFLFCSELGPKIKSTNPTISIRDMAKKLGEMWNNLNDSEKQPYITKAAKLK 138
           KRP++ F ++      K+   NP +   +++K+LG  W  L D+EK+P+I +A +L+
Sbjct: 140 KRPMNAFMVWSRGQRRKMALENPKMHNSEISKRLGADWKLLTDAEKRPFIDEAKRLR 196



>gi|3024656|sp|O15370|SX12_HUMAN   SOX-12 protein (SOX-22 protein)
          Length = 315

 Score = 43.1 bits (100), Expect = 3e-05
 Identities = 20/59 (33%), Positives = 34/59 (57%)

Query: 82  KRPLSGFFLFCSELGPKIKSTNPTISIRDMAKKLGEMWNNLNDSEKQPYITKAAKLKEK 140
           KRP++ F ++      KI    P +   +++K+LG  W  L DSEK P++ +A +L+ K
Sbjct: 41  KRPMNAFMVWSQHERRKIMDQWPDMHNAEISKRLGRRWQLLQDSEKIPFVREAERLRLK 99



 Score = 26.2 bits (56), Expect = 3.9
 Identities = 14/54 (25%), Positives = 28/54 (51%), Gaps = 2/54 (3%)

Query: 5  AFYVQTCREEHRKKNPEVPVNFAEFSKKCSERWKTMSGKDKSKFDEITKADKMR 58
          AF V +  E  +  +    ++ AE SK+   RW+ +   +K  F  + +A+++R
Sbjct: 46 AFMVWSQHERRKIMDQWPDMHNAEISKRLGRRWQLLQDSEKIPF--VREAERLR 97



>gi|20532272|sp|Q9BT81|SOX7_HUMAN   Transcription factor SOX-7
          Length = 388

 Score = 42.4 bits (98), Expect = 5e-05
 Identities = 16/57 (28%), Positives = 35/57 (61%)

Query: 82  KRPLSGFFLFCSELGPKIKSTNPTISIRDMAKKLGEMWNNLNDSEKQPYITKAAKLK 138
           +RP++ F ++  +   ++   NP +   +++K LG+ W  L  S+K+PY+ +A +L+
Sbjct: 46  RRPMNAFMVWAKDERKRLAVQNPDLHNAELSKMLGKSWKALTLSQKRPYVDEAERLR 102



>gi|2811002|sp|O00570|SOX1_HUMAN   SOX-1 protein
          Length = 387

 Score = 42.4 bits (98), Expect = 5e-05
 Identities = 17/57 (29%), Positives = 36/57 (63%)

Query: 82  KRPLSGFFLFCSELGPKIKSTNPTISIRDMAKKLGEMWNNLNDSEKQPYITKAAKLK 138
           KRP++ F ++      K+   NP +   +++K+LG  W  ++++EK+P+I +A +L+
Sbjct: 52  KRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGAEWKVMSEAEKRPFIDEAKRLR 108



 Score = 28.9 bits (63), Expect = 0.60
 Identities = 17/58 (29%), Positives = 33/58 (56%), Gaps = 4/58 (6%)

Query: 1   MSAYAFYVQTCREEHRKKNPEVPVNFAEFSKKCSERWKTMSGKDKSKFDEITKADKMR 58
           M+A+  + +  R +  ++NP++  + +E SK+    WK MS  +K  F  I +A ++R
Sbjct: 55  MNAFMVWSRGQRRKMAQENPKM--HNSEISKRLGAEWKVMSEAEKRPF--IDEAKRLR 108



>gi|548983|sp|Q05066|SRY_HUMAN   Sex-determining region Y protein (Testis-determining factor)
          Length = 204

 Score = 42.0 bits (97), Expect = 7e-05
 Identities = 18/57 (31%), Positives = 34/57 (59%)

Query: 82  KRPLSGFFLFCSELGPKIKSTNPTISIRDMAKKLGEMWNNLNDSEKQPYITKAAKLK 138
           KRP++ F ++  +   K+   NP +   +++K+LG  W  L ++EK P+  +A KL+
Sbjct: 61  KRPMNAFIVWSRDQRRKMALENPRMRNSEISKQLGYQWKMLTEAEKWPFFQEAQKLQ 117



>gi|20178338|sp|P35712|SOX6_HUMAN   Transcription factor SOX-6
          Length = 828

 Score = 42.0 bits (97), Expect = 7e-05
 Identities = 18/58 (31%), Positives = 34/58 (58%)

Query: 82  KRPLSGFFLFCSELGPKIKSTNPTISIRDMAKKLGEMWNNLNDSEKQPYITKAAKLKE 139
           KRP++ F ++  +   KI    P +   +++K LG  W ++++ EKQPY  + A+L +
Sbjct: 622 KRPMNAFMVWAKDERRKILQAFPDMHNSNISKILGSRWKSMSNQEKQPYYEEQARLSK 679



 Score = 25.0 bits (53), Expect = 8.7
 Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 1/40 (2%)

Query: 12  REEHRKKNPEVP-VNFAEFSKKCSERWKTMSGKDKSKFDE 50
           ++E RK     P ++ +  SK    RWK+MS ++K  + E
Sbjct: 633 KDERRKILQAFPDMHNSNISKILGSRWKSMSNQEKQPYYE 672



>gi|33112349|sp|O94842|LCP1_HUMAN   Epidermal Langerhans cell protein LCP1
          Length = 621

 Score = 41.6 bits (96), Expect = 9e-05
 Identities = 18/62 (29%), Positives = 34/62 (54%)

Query: 79  NASKRPLSGFFLFCSELGPKIKSTNPTISIRDMAKKLGEMWNNLNDSEKQPYITKAAKLK 138
           N  ++P+S + LF  +    IK  NP  +  +++K +  MW++L + +KQ Y  K    K
Sbjct: 221 NEPQKPVSAYALFFRDTQAAIKGQNPNATFGEVSKIVASMWDSLGEEQKQVYKRKTEAAK 280

Query: 139 EK 140
           ++
Sbjct: 281 KE 282



 Score = 30.0 bits (66), Expect = 0.27
 Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 2/59 (3%)

Query: 1   MSAYAFYVQTCREEHRKKNPEVPVNFAEFSKKCSERWKTMSGKDKSKFDEITKADKMRY 59
           +SAYA + +  +   + +NP     F E SK  +  W ++  + K  +   T+A K  Y
Sbjct: 227 VSAYALFFRDTQAAIKGQNPNA--TFGEVSKIVASMWDSLGEEQKQVYKRKTEAAKKEY 283



>gi|1709683|sp|P54277|PMS1_HUMAN   PMS1 protein homolog 1 (DNA mismatch repair protein PMS1)
          Length = 932

 Score = 41.6 bits (96), Expect = 9e-05
 Identities = 20/59 (33%), Positives = 31/59 (52%)

Query: 82  KRPLSGFFLFCSELGPKIKSTNPTISIRDMAKKLGEMWNNLNDSEKQPYITKAAKLKEK 140
           K+P+S   LF  +  P+    NP  S+ D   ++ E+W  L++ EK  Y  KA K  E+
Sbjct: 572 KKPMSASALFVQDHRPQFLIENPKTSLEDATLQIEELWKTLSEEEKLKYEEKATKDLER 630



 Score = 39.7 bits (91), Expect = 3e-04
 Identities = 22/63 (34%), Positives = 35/63 (55%), Gaps = 2/63 (3%)

Query: 1   MSAYAFYVQTCREEHRKKNPEVPVNFAEFSKKCSERWKTMSGKDKSKFDEITKADKMRYD 60
           MSA A +VQ  R +   +NP+  +  A    +  E WKT+S ++K K++E    D  RY+
Sbjct: 575 MSASALFVQDHRPQFLIENPKTSLEDATL--QIEELWKTLSEEEKLKYEEKATKDLERYN 632

Query: 61  QEM 63
            +M
Sbjct: 633 SQM 635



>gi|23822216|sp|Q9H6I2|SOX17_HUMAN   Transcription factor SOX-17
          Length = 414

 Score = 41.6 bits (96), Expect = 9e-05
 Identities = 15/57 (26%), Positives = 35/57 (61%)

Query: 82  KRPLSGFFLFCSELGPKIKSTNPTISIRDMAKKLGEMWNNLNDSEKQPYITKAAKLK 138
           +RP++ F ++  +   ++   NP +   +++K LG+ W  L  +EK+P++ +A +L+
Sbjct: 69  RRPMNAFMVWAKDERKRLAQQNPDLHNAELSKMLGKSWKALTLAEKRPFVEEAERLR 125



>gi|12643902|sp|Q9UN79|SX13_HUMAN   SOX-13 protein (Type 1 diabetes autoantigen ICA12) (Islet cell
           antigen 12)
          Length = 889

 Score = 41.2 bits (95), Expect = 1e-04
 Identities = 18/59 (30%), Positives = 32/59 (54%)

Query: 82  KRPLSGFFLFCSELGPKIKSTNPTISIRDMAKKLGEMWNNLNDSEKQPYITKAAKLKEK 140
           KRP++ F ++  +   KI    P +    ++K LG  W ++ + EKQPY  + A+L  +
Sbjct: 407 KRPMNAFMVWAKDERRKILQAFPDMHNSSISKILGSRWKSMTNQEKQPYYEEQARLSRQ 465



>gi|30179883|sp|P35711|SOX5_HUMAN   Transcription factor SOX-5
          Length = 763

 Score = 40.0 bits (92), Expect = 3e-04
 Identities = 18/59 (30%), Positives = 33/59 (55%)

Query: 82  KRPLSGFFLFCSELGPKIKSTNPTISIRDMAKKLGEMWNNLNDSEKQPYITKAAKLKEK 140
           KRP++ F ++  +   KI    P +   +++K LG  W  + + EKQPY  + A+L ++
Sbjct: 557 KRPMNAFMVWAKDERRKILQAFPDMHNSNISKILGSRWKAMTNLEKQPYYEEQARLSKQ 615



>gi|24211591|sp|Q96NM4|CTA0_HUMAN   Protein C20orf100
          Length = 488

 Score = 39.7 bits (91), Expect = 3e-04
 Identities = 16/50 (32%), Positives = 30/50 (60%)

Query: 79  NASKRPLSGFFLFCSELGPKIKSTNPTISIRDMAKKLGEMWNNLNDSEKQ 128
           N  ++P+S + LF  +    IK  NP+ +  D++K +  MW++L + +KQ
Sbjct: 253 NEPQKPVSAYALFFRDTQAAIKGQNPSATFGDVSKIVASMWDSLGEEQKQ 302



>gi|417324|sp|Q00059|TFAM_HUMAN   Transcription factor A, mitochondrial precursor (mtTFA)
           (Mitochondrial transcription factor 1) (MtTF1)
           (Transcription factor 6-like 2)
          Length = 246

 Score = 37.7 bits (86), Expect = 0.001
 Identities = 15/49 (30%), Positives = 27/49 (55%)

Query: 82  KRPLSGFFLFCSELGPKIKSTNPTISIRDMAKKLGEMWNNLNDSEKQPY 130
           K+P+S +  F  E  P  K+ NP     ++ +++ + W  L DS+K+ Y
Sbjct: 51  KKPVSSYLRFSKEQLPIFKAQNPDAKTTELIRRIAQRWRELPDSKKKIY 99



 Score = 35.8 bits (81), Expect = 0.005
 Identities = 28/142 (19%), Positives = 54/142 (38%), Gaps = 29/142 (20%)

Query: 16  RKKNPEVPVNFAEFSKKCSERWKTMSGKDKSKFDEITKADKMRYDQEMXXXXXXXXXXXX 75
           + +NP+      E  ++ ++RW+ +    K  + +  +A+   Y +E+            
Sbjct: 69  KAQNPDAKTT--ELIRRIAQRWRELPDSKKKIYQDAYRAEWQVYKEEISRFKEQLTPSQI 126

Query: 76  XXXNAS-----------------------KRPLSGFFLFCSELGPKIKSTNPTISIRDMA 112
                                        KRP S + ++ +E   + K  +P    ++  
Sbjct: 127 MSLEKEIMDKHLKRKAMTKKKELTLLGKPKRPRSAYNVYVAERFQEAKGDSP----QEKL 182

Query: 113 KKLGEMWNNLNDSEKQPYITKA 134
           K + E W NL+DSEK+ YI  A
Sbjct: 183 KTVKENWKNLSDSEKELYIQHA 204



 Score = 33.9 bits (76), Expect = 0.019
 Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 6/62 (9%)

Query: 2   SAYAFYVQTCREEHRKKNPEVPVNFAEFSKKCSERWKTMSGKDKSKFDEITKADKMRYDQ 61
           SAY  YV    +E +  +P+      E  K   E WK +S  +K  + +  K D+ RY  
Sbjct: 160 SAYNVYVAERFQEAKGDSPQ------EKLKTVKENWKNLSDSEKELYIQHAKEDETRYHN 213

Query: 62  EM 63
           EM
Sbjct: 214 EM 215



>gi|2495717|sp|Q12766|SMF_HUMAN   SMF protein
          Length = 1435

 Score = 35.8 bits (81), Expect = 0.005
 Identities = 17/59 (28%), Positives = 33/59 (55%)

Query: 81  SKRPLSGFFLFCSELGPKIKSTNPTISIRDMAKKLGEMWNNLNDSEKQPYITKAAKLKE 139
           +K+P S + L+  ++  K++   P +   ++ KK+ E W  L+ +E+  Y+ KA   KE
Sbjct: 185 TKKPRSAYLLYYYDIYLKVQQELPHLPQSEINKKISESWRLLSVAERSYYLEKAKLEKE 243



 Score = 30.4 bits (67), Expect = 0.21
 Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 2/59 (3%)

Query: 2   SAYAFYVQTCREEHRKKNPEVPVNFAEFSKKCSERWKTMSGKDKSKFDEITKADKMRYD 60
           SAY  Y      + +++ P +P +  E +KK SE W+ +S  ++S + E  K +K   D
Sbjct: 190 SAYLLYYYDIYLKVQQELPHLPQS--EINKKISESWRLLSVAERSYYLEKAKLEKEGLD 246



>gi|12643342|sp|Q9UGU5|HM21_HUMAN   High-mobility group protein 2-like 1 (HMGBCG protein)
          Length = 599

 Score = 34.7 bits (78), Expect = 0.011
 Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 2/59 (3%)

Query: 82  KRPLSGFFLFCSELGPKIKSTNPTISIRDMAKKLGEMWNNLNDSEKQPYITKAAKLKEK 140
           K+ +S + +FC E    I + +P     +++KKL E+W  L + +K  +  KA  L+ K
Sbjct: 408 KKNMSAYQVFCKEYRVTIVADHPDFG--ELSKKLAEVWKQLPEKDKLIWKQKAQYLQHK 464



 Score = 29.3 bits (64), Expect = 0.46
 Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 4/45 (8%)

Query: 1   MSAYAFYVQTCREEHRKKNPEVPVNFAEFSKKCSERWKTMSGKDK 45
           MSAY  + +  R      +P+    F E SKK +E WK +  KDK
Sbjct: 411 MSAYQVFCKEYRVTIVADHPD----FGELSKKLAEVWKQLPEKDK 451



>gi|29337134|sp|Q9HCS4|TF7L1_HUMAN   Transcription factor 7-like 1 (HMG-box transcription factor 3)
           (TCF-3)
          Length = 588

 Score = 32.0 bits (71), Expect = 0.071
 Identities = 16/58 (27%), Positives = 29/58 (50%)

Query: 82  KRPLSGFFLFCSELGPKIKSTNPTISIRDMAKKLGEMWNNLNDSEKQPYITKAAKLKE 139
           K+PL+ F L+  E+  K+ +         + + LG  W+NL+  E+  Y   A K ++
Sbjct: 347 KKPLNAFMLYMKEMRAKVVAECTLKESAAINQILGRKWHNLSREEQAKYYELARKERQ 404



>gi|14548264|sp|O75326|SEM7A_HUMAN   Semaphorin 7A precursor (Semaphorin L) (Sema L) (Semaphorin K1)
           (Sema K1) (John-Milton-Hargen human blood group Ag) (JMH
           blood group antigen) (CD108 antigen) (CDw108)
          Length = 666

 Score = 27.7 bits (60), Expect = 1.3
 Identities = 14/43 (32%), Positives = 22/43 (51%)

Query: 12  REEHRKKNPEVPVNFAEFSKKCSERWKTMSGKDKSKFDEITKA 54
           RE++  KNPE P+N +  ++ C       S    SK++   KA
Sbjct: 245 REDNPDKNPEAPLNVSRVAQLCRGDQGGESSLSVSKWNTFLKA 287



>gi|1709851|sp|P23246|SFPQ_HUMAN   Splicing factor, proline-and glutamine-rich (Polypyrimidine
           tract-binding protein-associated splicing factor)
           (PTB-associated splicing factor) (PSF) (DNA-binding
           p52/p100 complex, 100 kDa subunit)
          Length = 707

 Score = 27.3 bits (59), Expect = 1.8
 Identities = 14/48 (29%), Positives = 26/48 (54%), Gaps = 3/48 (6%)

Query: 17  KKNPEVPVNFAE---FSKKCSERWKTMSGKDKSKFDEITKADKMRYDQ 61
           +K  E P  FA+   F  + S+RWK++   +K + +++ K  K   D+
Sbjct: 471 QKERETPPRFAQHGTFEYEYSQRWKSLDEMEKQQREQVEKNMKDAKDK 518



>gi|37999866|sp|Q8NEZ4|MLL3_HUMAN   Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog
            (Histone-lysine N-methyltransferase, H3 lysine-4 specific
            MLL3) (Homologous to ALR protein)
          Length = 4911

 Score = 26.9 bits (58), Expect = 2.3
 Identities = 11/38 (28%), Positives = 20/38 (52%), Gaps = 2/38 (5%)

Query: 97   PKIKSTNPTISIRDMAKKLGEMWNNLNDSEKQPYITKA 134
            P +K   P  + R   K++ ++W   +  E+ PY+ KA
Sbjct: 1662 PNLKEEFPDWTTR--VKQIAKLWRKASSQERAPYVQKA 1697



>gi|5921744|sp|Q14839|CHD4_HUMAN   Chromodomain helicase-DNA-binding protein 4 (CHD-4) (Mi-2
           autoantigen 218 kDa protein) (Mi2-beta)
          Length = 1912

 Score = 26.2 bits (56), Expect = 3.9
 Identities = 12/41 (29%), Positives = 19/41 (46%)

Query: 83  RPLSGFFLFCSELGPKIKSTNPTISIRDMAKKLGEMWNNLN 123
           R L+ +  F   + P I + NP I++  M   LG  W   +
Sbjct: 173 RTLTNYKAFSQFVRPLIAAKNPKIAVSKMMMVLGAKWREFS 213



>gi|37999860|sp|O14686|MLL2_HUMAN   Myeloid/lymphoid or mixed-lineage leukemia protein 2 (ALL1-related
            protein)
          Length = 5262

 Score = 25.8 bits (55), Expect = 5.1
 Identities = 12/38 (31%), Positives = 21/38 (55%), Gaps = 2/38 (5%)

Query: 97   PKIKSTNPTISIRDMAKKLGEMWNNLNDSEKQPYITKA 134
            P +K   P  S R   K++ ++W  +  ++K PY+ KA
Sbjct: 1754 PNLKQDYPDWSSR--CKQIMKLWRKVPAADKAPYLQKA 1789



>gi|2498589|sp|Q13330|MTA1_HUMAN   Metastasis-associated protein MTA1
          Length = 715

 Score = 25.4 bits (54), Expect = 6.7
 Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 14/46 (30%)

Query: 5   AFYVQT----------CREE----HRKKNPEVPVNFAEFSKKCSER 36
           AFY+ T          CRE     H  +NP +P+N A    +C+ R
Sbjct: 470 AFYLHTTKLTRIARRLCREILRPWHAARNPYLPINSAAIKAECTAR 515



>gi|51316434|sp|Q86WC4|OTM1_HUMAN   Osteopetrosis associated transmembrane protein 1 precursor
           (HSPC019) (UNQ6098/PRO21201)
          Length = 334

 Score = 25.0 bits (53), Expect = 8.7
 Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 7/56 (12%)

Query: 10  TCREEHRKKNPEVPV---NFAEFSKKCSERWKTMSGKDKSKFDEITKADKMRYDQE 62
           TC E + + N    +   N++E  K C E +KT+S    S + E+ K +++    E
Sbjct: 198 TCFEHNLQGNAHSLLQTKNYSEVCKNCREAYKTLS----SLYSEMQKMNELENKAE 249






  Database: Non-redundant SwissProt sequences
    Posted date:  Mar 15, 2005 10:11 AM
  Number of letters in database: 60,490,055
  Number of sequences in database:  164,271
  
Lambda     K      H
   0.314    0.128    0.375 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 562,633
Number of Sequences: 164271
Number of extensions: 17936
Number of successful extensions: 51
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 34
Number of HSP's gapped (non-prelim): 20
length of query: 140
length of database: 6,424,444
effective HSP length: 85
effective length of query: 55
effective length of database: 5,412,519
effective search space: 297688545
effective search space used: 297688545
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 53 (25.0 bits)







 


 
Format
  


 


 
Show
  Graphical OverviewLinkoutSequence RetrievalNCBI-giAlignmentPSSMBioseq in HTMLPlain textASN.1XMLformat


 


 
Use new formatter
  Masking CharacterDefault(X for protein, n for nucleotide)Lower Case
Masking ColorBlackGreyRed



 


 
Number of:
  Descriptions01050100250500
Alignments01050100250500



 


 
Alignment view
  PairwisePairwise with identitiesquery-anchored with identitiesquery-anchored without identitiesflat query-anchored with identitiesflat query-anchored without identitiesHit Table


 


 
Format for PSI-BLAST
  with inclusion threshold:


 


 
Limit results by entrez query
   or select from:All organismsViruses [ORGN]Archaea [ORGN]Bacteria [ORGN]Eukaryota [ORGN]Viridiplantae [ORGN]Fungi [ORGN]Metazoa [ORGN]Arthropoda [ORGN]Vertebrata [ORGN]Mammalia [ORGN]Rodentia [ORGN]Primates [ORGN]-------------------Aeropyrum pernix [ORGN]Aquifex aeolicus [ORGN]Arabidopsis thaliana [ORGN]Bacillus subtilis [ORGN]Bos taurus [ORGN]Caenorhabditis elegans [ORGN]Canis familiaris[ORGN]Danio rerio [ORGN]Dictyostelium discoideum [ORGN]Drosophila melanogaster [ORGN]Escherichia coli [ORGN]Gallus gallus [ORGN]Homo sapiens [ORGN]Human immunodeficiency virus type 1 [ORGN]Methanococcus jannaschii [ORGN]Mus musculus [ORGN]Oryctolagus cuniculus [ORGN]Oryza sativa [ORGN]Ovis aries [ORGN]Plasmodium falciparum [ORGN]Rattus norvegicus [ORGN]Saccharomyces cerevisiae [ORGN]Schizosaccharomyces pombe [ORGN]Xenopus tropicalis[ORGN]Simian immunodeficiency virus [ORGN]Sus scrofa[ORGN]Synechocystis PCC6803 [ORGN]Takifugu rubripes [ORGN]Xenopus laevis [ORGN]Zea mays [ORGN]


 


 
Expect value range:
    







 or