BLASTP 2.2.10 [Oct-19-2004]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

RID: 1111164581-351-206368938348.BLASTQ2

Query= FGENESH:  18   4 exon (s) 462161  - 479933   115 aa,
chain -
         (114 letters)


Database: Non-redundant SwissProt sequences 
           164,271 sequences; 60,490,055 total letters

 
If you have any problems or questions with the results of this search 
please refer to the BLAST FAQs

Taxonomy reports

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|50401068|sp|Q8N119|MMP21_HUMAN  Matrix metalloproteinase-...    33   0.014 
gi|12643663|sp|O95704|ABB3_HUMAN  Amyloid beta A4 precursor ...    28   0.60  
gi|136204|sp|P08582|TRFM_HUMAN  Melanotransferrin precursor ...    27   1.0   
gi|399376|sp|Q01459|DIAC_HUMAN  Di-N-acetylchitobiase precursor    26   2.3   
gi|56748895|sp|Q9Y5Y9|CINA_HUMAN  Sodium channel protein typ...    26   2.3   
gi|23822239|sp|Q12799|TC10_HUMAN  T-complex protein 10A homolog    26   2.3   
gi|59802920|sp|Q14449|GRB14_HUMAN  Growth factor receptor-bo...    26   3.0   
gi|47606114|sp|Q7RTU9|STRC_HUMAN  Stereocilin precursor            25   3.9   
gi|33860140|sp|Q13625|ASP2_HUMAN  Apoptosis stimulating of p...    25   3.9   
gi|20178102|sp|O75159|SOC5_HUMAN  Cytokine inducible SH2-con...    25   5.1   
gi|6093672|sp|O15534|PER1_HUMAN  Period circadian protein 1 ...    25   5.1   
gi|1350802|sp|Q05823|RN5A_HUMAN  2-5A-dependent ribonuclease...    24   8.7   
gi|25090493|sp|O43424|GRD2_HUMAN  Glutamate receptor delta-2...    24   8.7   


Alignments

>gi|50401068|sp|Q8N119|MMP21_HUMAN   Matrix metalloproteinase-21 precursor (MMP-21)
          Length = 569

 Score = 33.5 bits (75), Expect = 0.014
 Identities = 16/62 (25%), Positives = 31/62 (50%)

Query: 3   RGNRVPGNMMRRVYREIGSADGGLSSSFQQQNETWYGYGSYVKMSRDSDKAVALRALAYK 62
           R  R P ++ RR ++  G  DGG + +F ++  +W   G  +     +     + ALA++
Sbjct: 144 RSPRAPLSLSRRGWQPRGYPDGGAAQAFSKRTLSWRLLGEALSSQLSAADQRRIVALAFR 203

Query: 63  LW 64
           +W
Sbjct: 204 MW 205



>gi|12643663|sp|O95704|ABB3_HUMAN   Amyloid beta A4 precursor protein-binding family B member 3
           (Fe65-like protein 2) (Fe65L2)
          Length = 486

 Score = 28.1 bits (61), Expect = 0.60
 Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 1/43 (2%)

Query: 20  GSADGGLSSSFQQQNE-TWYGYGSYVKMSRDSDKAVALRALAY 61
           G +   L SS  + N  +WYG  SY++      K  A+R+L +
Sbjct: 84  GRSFSSLESSLDRSNSLSWYGGESYIQSMEPGAKCFAVRSLGW 126



>gi|136204|sp|P08582|TRFM_HUMAN   Melanotransferrin precursor (Melanoma-associated antigen p97)
           (CD228 antigen)
          Length = 738

 Score = 27.3 bits (59), Expect = 1.0
 Identities = 17/52 (32%), Positives = 23/52 (44%), Gaps = 1/52 (1%)

Query: 28  SSFQQQNETWYGYGSYVKMSRDSDKAVALRALAYKLWLFIGYLHPLKGASSD 79
           SSFQ  +   YG    +     S+  V +    Y+ WL   YLH +KG   D
Sbjct: 308 SSFQMFSSEAYGQKDLLFKDSTSE-LVPIATQTYEAWLGHEYLHAMKGLLCD 358



 Score = 24.6 bits (52), Expect = 6.7
 Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 4/33 (12%)

Query: 61  YKLWLFIGYLHPLKGASSDDIGDLTEGTAIPAP 93
           Y+ WL + Y+  L+G SS        G A PAP
Sbjct: 689 YRGWLGLDYVAALEGMSSQQ----CSGAAAPAP 717



>gi|399376|sp|Q01459|DIAC_HUMAN   Di-N-acetylchitobiase precursor
          Length = 385

 Score = 26.2 bits (56), Expect = 2.3
 Identities = 19/65 (29%), Positives = 26/65 (40%), Gaps = 18/65 (27%)

Query: 8   PGNMMRRVYREIGSADGG---LSSSFQQQNETWY---------------GYGSYVKMSRD 49
           P N+ RR Y   G AD        S+ +Q++ W                GY  Y+KMS +
Sbjct: 184 PKNIDRRCYNYTGIADACDFLFVMSYDEQSQIWSECIAAANAPYNQTLTGYNDYIKMSIN 243

Query: 50  SDKAV 54
             K V
Sbjct: 244 PKKLV 248



>gi|56748895|sp|Q9Y5Y9|CINA_HUMAN   Sodium channel protein type X alpha subunit (Voltage-gated sodium
            channel alpha subunit Nav1.8) (Peripheral nerve sodium
            channel 3) (hPN3)
          Length = 1956

 Score = 26.2 bits (56), Expect = 2.3
 Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 5/43 (11%)

Query: 72   PLKGASSDDI----GDLTEGTAIP-APVPGVDTFQNVKGSKVD 109
            P  G SS+D+    G+  +  ++P AP  GVD   + +GS VD
Sbjct: 1048 PGTGTSSEDLAPSLGETWKDESVPQAPAEGVDDTSSSEGSTVD 1090



>gi|23822239|sp|Q12799|TC10_HUMAN   T-complex protein 10A homolog
          Length = 416

 Score = 26.2 bits (56), Expect = 2.3
 Identities = 13/40 (32%), Positives = 21/40 (52%)

Query: 17  REIGSADGGLSSSFQQQNETWYGYGSYVKMSRDSDKAVAL 56
           +EI   DG +      Q ET +  G+ V++ R+ DK + L
Sbjct: 299 KEIVFPDGTVEHLKDGQEETLFPDGTIVRVERNGDKTIVL 338



>gi|59802920|sp|Q14449|GRB14_HUMAN   Growth factor receptor-bound protein 14 (GRB14 adapter protein)
          Length = 540

 Score = 25.8 bits (55), Expect = 3.0
 Identities = 10/23 (43%), Positives = 15/23 (65%)

Query: 55  ALRALAYKLWLFIGYLHPLKGAS 77
           A+R L Y + L+  Y+HP +G S
Sbjct: 336 AIRLLKYGMQLYQNYMHPYQGRS 358



>gi|47606114|sp|Q7RTU9|STRC_HUMAN   Stereocilin precursor
          Length = 1775

 Score = 25.4 bits (54), Expect = 3.9
 Identities = 13/41 (31%), Positives = 21/41 (51%)

Query: 6    RVPGNMMRRVYREIGSADGGLSSSFQQQNETWYGYGSYVKM 46
            +VP N+  R  + +G+  GG+S  F QQ  +   +   V M
Sbjct: 1175 QVPTNLTLRNLQALGTLAGGMSCEFLQQINSMVDFLEVVHM 1215



>gi|33860140|sp|Q13625|ASP2_HUMAN   Apoptosis stimulating of p53 protein 2 (Tumor suppressor
           p53-binding protein 2) (p53-binding protein 2) (53BP2)
           (Bcl2-binding protein) (Bbp)
          Length = 1128

 Score = 25.4 bits (54), Expect = 3.9
 Identities = 11/23 (47%), Positives = 17/23 (73%), Gaps = 1/23 (4%)

Query: 77  SSDDIGDL-TEGTAIPAPVPGVD 98
           S +D+G+  TE + +PAP PG+D
Sbjct: 809 SPEDVGNASTENSDMPAPSPGLD 831



>gi|20178102|sp|O75159|SOC5_HUMAN   Cytokine inducible SH2-containing protein 5 (Suppressor of cytokine
           signaling 5) (SOCS-5) (Cytokine-inducible SH2 protein 6)
           (CIS-6)
          Length = 536

 Score = 25.0 bits (53), Expect = 5.1
 Identities = 15/50 (30%), Positives = 23/50 (46%)

Query: 25  GLSSSFQQQNETWYGYGSYVKMSRDSDKAVALRALAYKLWLFIGYLHPLK 74
           G + S  Q+ E  YG  S   M   S + V  R+L  +L   +G   P++
Sbjct: 143 GRTRSGLQRRERRYGVSSVHDMDSVSSRTVGSRSLRQRLQDTVGLCFPMR 192



>gi|6093672|sp|O15534|PER1_HUMAN   Period circadian protein 1 (Circadian pacemaker protein Rigui)
           (hPER)
          Length = 1290

 Score = 25.0 bits (53), Expect = 5.1
 Identities = 17/36 (47%), Positives = 19/36 (52%), Gaps = 5/36 (13%)

Query: 68  GYLHPLKGASSDDIGDLTEGTAIPAPVPGVDTFQNV 103
           G LH   G+SSD  G   EG   PAPV    TFQ +
Sbjct: 519 GPLHS-PGSSSDSNGGDAEGPGPPAPV----TFQQI 549



>gi|1350802|sp|Q05823|RN5A_HUMAN   2-5A-dependent ribonuclease (2-5A-dependent RNase) (Ribonuclease
          L) (RNase L) (Ribonuclease 4)
          Length = 741

 Score = 24.3 bits (51), Expect = 8.7
 Identities = 11/35 (31%), Positives = 20/35 (57%)

Query: 23 DGGLSSSFQQQNETWYGYGSYVKMSRDSDKAVALR 57
          +GG + +FQ++   W    + V+MSR+    + LR
Sbjct: 46 EGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLR 80



>gi|25090493|sp|O43424|GRD2_HUMAN   Glutamate receptor delta-2 subunit precursor (GluR delta-2)
          Length = 1007

 Score = 24.3 bits (51), Expect = 8.7
 Identities = 13/43 (30%), Positives = 20/43 (46%), Gaps = 1/43 (2%)

Query: 25  GLSSSFQQQNETWYGYGSYVKMSRDSD-KAVALRALAYKLWLF 66
           G  +S    N  W+ YGS+V+   +     +A R +    WLF
Sbjct: 598 GSMTSTTLYNSMWFVYGSFVQQGGEVPYTTLATRMMMGAWWLF 640






  Database: Non-redundant SwissProt sequences
    Posted date:  Mar 15, 2005 10:11 AM
  Number of letters in database: 60,490,055
  Number of sequences in database:  164,271
  
Lambda     K      H
   0.317    0.136    0.411 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 548,460
Number of Sequences: 164271
Number of extensions: 21619
Number of successful extensions: 70
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 70
Number of HSP's gapped (non-prelim): 3
length of query: 114
length of database: 6,424,444
effective HSP length: 82
effective length of query: 32
effective length of database: 5,448,234
effective search space: 174343488
effective search space used: 174343488
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.3 bits)







 


 
Format
  


 


 
Show
  Graphical OverviewLinkoutSequence RetrievalNCBI-giAlignmentPSSMBioseq in HTMLPlain textASN.1XMLformat


 


 
Use new formatter
  Masking CharacterDefault(X for protein, n for nucleotide)Lower Case
Masking ColorBlackGreyRed



 


 
Number of:
  Descriptions01050100250500
Alignments01050100250500



 


 
Alignment view
  PairwisePairwise with identitiesquery-anchored with identitiesquery-anchored without identitiesflat query-anchored with identitiesflat query-anchored without identitiesHit Table


 


 
Format for PSI-BLAST
  with inclusion threshold:


 


 
Limit results by entrez query
   or select from:All organismsViruses [ORGN]Archaea [ORGN]Bacteria [ORGN]Eukaryota [ORGN]Viridiplantae [ORGN]Fungi [ORGN]Metazoa [ORGN]Arthropoda [ORGN]Vertebrata [ORGN]Mammalia [ORGN]Rodentia [ORGN]Primates [ORGN]-------------------Aeropyrum pernix [ORGN]Aquifex aeolicus [ORGN]Arabidopsis thaliana [ORGN]Bacillus subtilis [ORGN]Bos taurus [ORGN]Caenorhabditis elegans [ORGN]Canis familiaris[ORGN]Danio rerio [ORGN]Dictyostelium discoideum [ORGN]Drosophila melanogaster [ORGN]Escherichia coli [ORGN]Gallus gallus [ORGN]Homo sapiens [ORGN]Human immunodeficiency virus type 1 [ORGN]Methanococcus jannaschii [ORGN]Mus musculus [ORGN]Oryctolagus cuniculus [ORGN]Oryza sativa [ORGN]Ovis aries [ORGN]Plasmodium falciparum [ORGN]Rattus norvegicus [ORGN]Saccharomyces cerevisiae [ORGN]Schizosaccharomyces pombe [ORGN]Xenopus tropicalis[ORGN]Simian immunodeficiency virus [ORGN]Sus scrofa[ORGN]Synechocystis PCC6803 [ORGN]Takifugu rubripes [ORGN]Xenopus laevis [ORGN]Zea mays [ORGN]


 


 
Expect value range:
    







 or