BLASTP 2.2.10 [Oct-19-2004]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. RID: 1111166525-6607-36437628424.BLASTQ2 Query= hox|GENSCAN_predicted_peptide_13|244_aa (243 letters) Database: Non-redundant SwissProt sequences 164,271 sequences; 60,490,055 total letters If you have any problems or questions with the results of this search please refer to the BLAST FAQs Taxonomy reports
RID: 1111166525-6607-36437628424.BLASTQ2
Query= hox|GENSCAN_predicted_peptide_13|244_aa (243 letters)
Database: Non-redundant SwissProt sequences 164,271 sequences; 60,490,055 total letters
If you have any problems or questions with the results of this search please refer to the BLAST FAQs
Taxonomy reports
Score E Sequences producing significant alignments: (bits) Value gi|1173039|sp|P42766|RL35_HUMAN 60S ribosomal protein L35 70 5e-13 gi|23821814|sp|Q9P2E3|KE04_HUMAN Protein KIAA1404 29 1.2 gi|59800391|sp|O75410|TACC1_HUMAN Transforming acidic coile... 29 1.6 gi|29427946|sp|Q96GQ7|DD27_HUMAN Probable ATP-dependent RNA... 28 2.8 gi|729094|sp|P39880|CUTL1_HUMAN CCAAT displacement protein ... 28 3.6 gi|59803114|sp|Q9NVE5|UBP40_HUMAN Ubiquitin carboxyl-termin... 28 3.6 gi|12644302|sp|P51816|FMR2_HUMAN Fragile X mental retardati... 27 4.7 gi|8928220|sp|O95644|NFC1_HUMAN Nuclear factor of activated... 27 4.7 gi|6919871|sp|O14641|DVL2_HUMAN Segment polarity protein di... 27 6.2 Alignments
Score E Sequences producing significant alignments: (bits) Value gi|1173039|sp|P42766|RL35_HUMAN 60S ribosomal protein L35 70 5e-13 gi|23821814|sp|Q9P2E3|KE04_HUMAN Protein KIAA1404 29 1.2 gi|59800391|sp|O75410|TACC1_HUMAN Transforming acidic coile... 29 1.6 gi|29427946|sp|Q96GQ7|DD27_HUMAN Probable ATP-dependent RNA... 28 2.8 gi|729094|sp|P39880|CUTL1_HUMAN CCAAT displacement protein ... 28 3.6 gi|59803114|sp|Q9NVE5|UBP40_HUMAN Ubiquitin carboxyl-termin... 28 3.6 gi|12644302|sp|P51816|FMR2_HUMAN Fragile X mental retardati... 27 4.7 gi|8928220|sp|O95644|NFC1_HUMAN Nuclear factor of activated... 27 4.7 gi|6919871|sp|O14641|DVL2_HUMAN Segment polarity protein di... 27 6.2
>gi|1173039|sp|P42766|RL35_HUMAN 60S ribosomal protein L35 Length = 123 Score = 70.5 bits (171), Expect = 5e-13 Identities = 36/44 (81%), Positives = 38/44 (86%) Query: 194 PLDLWPKKTRAMCCRFNKHKENLKTKKRQRKERLCLLRKYAVKA 237 PLDL PKKTRAM R NKH+ENLKTKK+QRKERL LRKYAVKA Sbjct: 80 PLDLRPKKTRAMRRRLNKHEENLKTKKQQRKERLYPLRKYAVKA 123
>gi|23821814|sp|Q9P2E3|KE04_HUMAN Protein KIAA1404 Length = 1918 Score = 29.3 bits (64), Expect = 1.2 Identities = 13/26 (50%), Positives = 15/26 (57%) Query: 72 AGSKPKRALHRGARDPGIHPRAGSTP 97 A + P AL GA PG HPRA + P Sbjct: 35 ANNPPANALRGGASHPGRHPRANNHP 60
>gi|59800391|sp|O75410|TACC1_HUMAN Transforming acidic coiled-coil-containing protein 1 (Taxin 1) (Gastric cancer antigen Ga55) Length = 805 Score = 28.9 bits (63), Expect = 1.6 Identities = 11/29 (37%), Positives = 20/29 (68%) Query: 21 EAGLERKNCQTIGQSGQSLCQLIDSSTVK 49 EAG+E++ CQ + + G ++ L++SS K Sbjct: 552 EAGIEKETCQKMEEDGSTVLGLLESSAEK 580
>gi|29427946|sp|Q96GQ7|DD27_HUMAN Probable ATP-dependent RNA helicase DDX27 (DEAD-box protein 27) (HSPC259) (PP3241) Length = 796 Score = 28.1 bits (61), Expect = 2.8 Identities = 13/39 (33%), Positives = 21/39 (53%) Query: 26 RKNCQTIGQSGQSLCQLIDSSTVKTARVSLPMVPSLAQK 64 +K C +G G+ +C + T KTA +LP++ L K Sbjct: 245 QKACIPVGLLGKDICACAATGTGKTAAFALPVLERLIYK 283
>gi|729094|sp|P39880|CUTL1_HUMAN CCAAT displacement protein (CDP) (Cut-like 1) Length = 1505 Score = 27.7 bits (60), Expect = 3.6 Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 6/69 (8%) Query: 63 QKNSSGTEDAGSKPKRALHRGARDPGIHPRAGSTPHLTEGYSLMGTEDPRYKEEFPSLSD 122 ++N++ +E+A ++ G ++ G G + E L G Y +E+PS Sbjct: 832 RRNAASSEEAKARETG----GGKEKGSGGSGGGSQPRAERSQLQGPSSSEYWKEWPSAES 887 Query: 123 PY--QSQLS 129 PY S+LS Sbjct: 888 PYSQSSELS 896
>gi|59803114|sp|Q9NVE5|UBP40_HUMAN Ubiquitin carboxyl-terminal hydrolase 40 (Ubiquitin thiolesterase 40) (Ubiquitin-specific processing protease 40) (Deubiquitinating enzyme 40) Length = 1235 Score = 27.7 bits (60), Expect = 3.6 Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 1/49 (2%) Query: 8 FHWRVTPVKEEKWEAGLERKNC-QTIGQSGQSLCQLIDSSTVKTARVSL 55 F R+ +KE K L +C + I ++G+ LC + DS T+K A + + Sbjct: 777 FDIRIKAIKELKLMKELADNSCLRPIDRNGKLLCPVPDSYTLKEAELKM 825
>gi|12644302|sp|P51816|FMR2_HUMAN Fragile X mental retardation 2 protein (Protein FMR-2) (FMR2P) (Ox19 protein) (Fragile X E mental retardation syndrome protein) Length = 1311 Score = 27.3 bits (59), Expect = 4.7 Identities = 22/89 (24%), Positives = 39/89 (43%), Gaps = 2/89 (2%) Query: 35 SGQSLCQLIDSSTVKTARVSLPMVPSLAQKNSSGTEDAGSKPKRALHR-GARDPGIHPRA 93 + S +L + ++T+ VSLP PS ++ + P ++H G + Sbjct: 330 AASSKTKLPKFTILQTSEVSLPSDPSCVEEILREMTHSWPTPLTSMHTAGHSEQSTFSIP 389 Query: 94 GS-TPHLTEGYSLMGTEDPRYKEEFPSLS 121 G + HLT G++L DP + S+S Sbjct: 390 GQESQHLTPGFTLQKWNDPTTRASTKSVS 418
>gi|8928220|sp|O95644|NFC1_HUMAN Nuclear factor of activated T-cells, cytoplasmic 1 (NFAT transcription complex cytosolic component) (NF-ATc1) (NF-ATc) Length = 943 Score = 27.3 bits (59), Expect = 4.7 Identities = 29/108 (26%), Positives = 39/108 (36%), Gaps = 17/108 (15%) Query: 38 SLCQLIDSSTVKTARVSLPMVPSLAQKNSSGTEDAGSKPKRA--------LHRGARDPGI 89 S L D VK+ + +L PS+A K ED GS P A + R G Sbjct: 323 SSLDLGDGVPVKSRKTTLEQPPSVALKVEPVGEDLGSPPPPADFAPEDYSSFQHIRKGGF 382 Query: 90 ---------HPRAGSTPHLTEGYSLMGTEDPRYKEEFPSLSDPYQSQL 128 HP + P S M P + PS S PY+ ++ Sbjct: 383 CDQYLAVPQHPYQWAKPKPLSPTSYMSPTLPALDWQLPSHSGPYELRI 430
>gi|6919871|sp|O14641|DVL2_HUMAN Segment polarity protein dishevelled homolog DVL-2 (Dishevelled-2) (DSH homolog 2) Length = 736 Score = 26.9 bits (58), Expect = 6.2 Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 5/45 (11%) Query: 66 SSGTEDAGSKPKRALHRGARD----PGIHPRAGSTPHLTEGYSLM 106 +SGT D G P R GA + PG+HP G P + Y+ M Sbjct: 637 ASGTSDGGPPPSRGSTGGAPNLRAHPGLHP-YGPPPGMALPYNPM 680
Database: Non-redundant SwissProt sequences Posted date: Mar 15, 2005 10:11 AM Number of letters in database: 60,490,055 Number of sequences in database: 164,271 Lambda K H 0.316 0.129 0.392 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 483,079 Number of Sequences: 164271 Number of extensions: 20128 Number of successful extensions: 81 Number of sequences better than 10.0: 2 Number of HSP's better than 10.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 80 Number of HSP's gapped (non-prelim): 2 length of query: 243 length of database: 6,424,444 effective HSP length: 93 effective length of query: 150 effective length of database: 5,317,279 effective search space: 797591850 effective search space used: 797591850 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 57 (26.6 bits)
