RID=1111168083-28572-77806012091.BLASTQ4, FGENESH: 16 8 exon (s) 325130

BLASTP 2.2.10 [Oct-19-2004]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
RID: 1111168083-28572-77806012091.BLASTQ4
Query= FGENESH: 16 8 exon (s) 325130 - 332385 556 aa, chain + (556 letters)
Database: Non-redundant SwissProt sequences 164,271 sequences; 60,490,055 total letters
If you have any problems or questions with the results of this search
please refer to the BLAST FAQs
Taxonomy reports
Distribution of 188 Blast Hits on the Query Sequence


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|1352398|sp|P49640|EVX1_HUMAN  Homeobox even-skipped homol...   597   e-171 
gi|12231013|sp|Q03828|EVX2_HUMAN  Homeobox even-skipped homo...   285   3e-77 
gi|20532295|sp|Q9UIW0|VAX2_HUMAN  Ventral anterior homeobox 2      78   9e-15 
gi|123270|sp|P14652|HXB2_HUMAN  Homeobox protein Hox-B2 (Hox...    77   2e-14 
gi|6016292|sp|O43364|HXA2_HUMAN  Homeobox protein Hox-A2           77   2e-14 
gi|1708540|sp|P52945|IPF1_HUMAN  Insulin promoter factor-1 (...    77   2e-14 
gi|6166222|sp|P31249|HXD3_HUMAN  Homeobox protein Hox-D3 (Ho...    73   2e-13 
gi|6016293|sp|O43365|HXA3_HUMAN  Homeobox protein Hox-A3 (Ho...    73   2e-13 
gi|123268|sp|P14651|HXB3_HUMAN  Homeobox protein Hox-B3 (Hox...    72   5e-13 
gi|1709078|sp|P50221|MEOX1_HUMAN  Homeobox protein MOX-1 (Me...    72   5e-13 
gi|45644931|sp|P50219|HLXB9_HUMAN  Homeobox protein HB9            72   7e-13 
gi|547692|sp|P17483|HXB4_HUMAN  Homeobox protein Hox-B4 (Hox...    71   9e-13 
gi|123271|sp|P14653|HXB1_HUMAN  Homeobox protein Hox-B1 (Hox...    71   9e-13 
gi|1709079|sp|P50222|MEOX2_HUMAN  Homeobox protein MOX-2 (Me...    71   9e-13 
gi|6166216|sp|P49639|HXA1_HUMAN  Homeobox protein Hox-A1 (Ho...    71   9e-13 
gi|232262|sp|Q00444|HXC5_HUMAN  Homeobox protein Hox-C5 (Hox...    70   1e-12 
gi|29336920|sp|Q9BZE3|BARH1_HUMAN  BarH-like 1 homeobox prot...    70   1e-12 
gi|123279|sp|P09017|HXC4_HUMAN  Homeobox protein Hox-C4 (Hox...    70   2e-12 
gi|13959687|sp|P35548|MSX2_HUMAN  Homeobox protein MSX-2 (Ho...    69   3e-12 
gi|27923786|sp|Q9H4S2|GSHI_HUMAN  Homeobox protein GSH-1           69   6e-12 
gi|6016210|sp|P78367|NK32_HUMAN  Homeobox protein Nkx-3.2 (B...    69   6e-12 
gi|1345720|sp|P47902|CDX1_HUMAN  Homeobox protein CDX-1 (Cau...    69   6e-12 
gi|20141491|sp|P09016|HXD4_HUMAN  Homeobox protein Hox-D4 (H...    68   7e-12 
gi|12644308|sp|P52951|GBX2_HUMAN  Homeobox protein GBX-2 (Ga...    68   7e-12 
gi|6166217|sp|Q00056|HXA4_HUMAN  Homeobox protein Hox-A4 (Ho...    68   9e-12 
gi|20138327|sp|Q9BZM3|GSH2_HUMAN  Homeobox protein GSH-2           67   1e-11 
gi|57015304|sp|Q04741|EMX1_HUMAN  Homeobox protein EMX1 (Emp...    67   2e-11 
gi|47117915|sp|Q9NY43|BARH2_HUMAN  BarH-like 2 homeobox protein    67   2e-11 
gi|52788238|sp|P20719|HXA5_HUMAN  Homeobox protein Hox-A5 (H...    67   2e-11 
gi|400000|sp|P09067|HXB5_HUMAN  Homeobox protein Hox-B5 (Hox...    67   2e-11 
gi|12230077|sp|Q14549|GBX1_HUMAN  Homeobox protein GBX-1 (Ga...    67   2e-11 
gi|17377578|sp|Q99801|NKX31_HUMAN  Homeobox protein Nkx-3.1        65   5e-11 
gi|27923817|sp|Q9H2Z4|NK24_HUMAN  Homeobox protein Nkx-2.4 (...    65   5e-11 
gi|17378648|sp|Q9GZZ0|HXD1_HUMAN  Homeobox protein Hox-D1          65   6e-11 
gi|17378385|sp|P31267|HXA6_HUMAN  Homeobox protein Hox-A6 (H...    65   6e-11 
gi|19862512|sp|Q04743|EMX2_HUMAN  Homeobox protein EMX2 (Emp...    65   8e-11 
gi|13124738|sp|P17509|HXB6_HUMAN  Homeobox protein Hox-B6 (H...    65   8e-11 
gi|3915721|sp|P31268|HXA7_HUMAN  Homeobox protein Hox-A7 (Ho...    64   1e-10 
gi|1708211|sp|P52952|NK25_HUMAN  Homeobox protein Nkx-2.5 (H...    64   1e-10 
gi|6174889|sp|P26367|PAX6_HUMAN  Paired box protein Pax-6 (O...    64   2e-10 
gi|12644227|sp|P35452|HXD12_HUMAN  Homeobox protein Hox-D12 ...    64   2e-10 
gi|13124744|sp|P31270|HXA11_HUMAN  Homeobox protein Hox-A11 ...    63   2e-10 
gi|123255|sp|P09629|HXB7_HUMAN  Homeobox protein Hox-B7 (Hox...    63   2e-10 
gi|27923733|sp|Q96QS3|ARX_HUMAN  Homeobox protein ARX (Arist...    62   4e-10 
gi|12644203|sp|P31277|HXD11_HUMAN  Homeobox protein Hox-D11 ...    62   4e-10 
gi|20141493|sp|P09630|HXC6_HUMAN  Homeobox protein Hox-C6 (H...    62   4e-10 
gi|13431329|sp|Q9UMQ3|BARX2_HUMAN  Homeobox protein BarH-like 2    62   5e-10 
gi|12644330|sp|P56179|DLX6_HUMAN  Homeobox protein DLX-6           62   5e-10 
gi|399982|sp|P31314|TLX1_HUMAN  T-cell leukemia homeobox pro...    62   5e-10 
gi|27923815|sp|Q8TAU0|NKX23_HUMAN  Homeobox protein Nkx-2.3 ...    62   5e-10 
gi|20141537|sp|P31274|HXC9_HUMAN  Homeobox protein Hox-C9 (H...    62   7e-10 
gi|6166219|sp|P31269|HXA9_HUMAN  Homeobox protein Hox-A9 (Ho...    62   7e-10 
gi|123286|sp|P28356|HXD9_HUMAN  Homeobox protein Hox-D9 (Hox...    61   1e-09 
gi|2506529|sp|Q07687|DLX2_HUMAN  Homeobox protein DLX-2            61   1e-09 
gi|23503066|sp|P28360|MSX1_HUMAN  Homeobox protein MSX-1 (Ho...    61   1e-09 
gi|14917010|sp|Q05925|HME1_HUMAN  Homeobox protein engrailed...    61   1e-09 
gi|3913487|sp|O60479|DLX3_HUMAN  Homeobox protein DLX-3            60   2e-09 
gi|20141507|sp|P17482|HXB9_HUMAN  Homeobox protein Hox-B9 (H...    60   2e-09 
gi|20141506|sp|P17481|HXB8_HUMAN  Homeobox protein Hox-B8 (H...    60   2e-09 
gi|20141282|sp|Q99626|CDX2_HUMAN  Homeobox protein CDX-2 (Ca...    60   2e-09 
gi|21903415|sp|P19622|HME2_HUMAN  Homeobox protein engrailed...    60   2e-09 
gi|14194481|sp|Q9HBU1|BARX1_HUMAN  Homeobox protein BarH-like 1    60   2e-09 
gi|13124737|sp|P13378|HXD8_HUMAN  Homeobox protein Hox-D8 (H...    60   3e-09 
gi|3287858|sp|O43248|HXC11_HUMAN  Homeobox protein Hox-C11         60   3e-09 
gi|3287764|sp|O43186|CRX_HUMAN  Cone-rod homeobox protein          60   3e-09 
gi|12644329|sp|P56178|DLX5_HUMAN  Homeobox protein DLX-5           60   3e-09 
gi|20141538|sp|P31275|HXC12_HUMAN  Homeobox protein Hox-C12 ...    60   3e-09 
gi|23831508|sp|O43711|TLX3_HUMAN  T-cell leukemia homeobox p...    60   3e-09 
gi|123289|sp|P28358|HXD10_HUMAN  Homeobox protein Hox-D10 (H...    59   3e-09 
gi|20141612|sp|Q9NYD6|HXC10_HUMAN  Homeobox protein Hox-C10        59   3e-09 
gi|3914276|sp|O43316|PAX4_HUMAN  Paired box protein Pax-4          59   3e-09 
gi|20532396|sp|O43763|TLX2_HUMAN  T-cell leukemia homeobox p...    59   6e-09 
gi|13124745|sp|P31273|HXC8_HUMAN  Homeobox protein Hox-C8 (H...    58   7e-09 
gi|17380297|sp|Q9Y2V3|RX_HUMAN  Retinal homeobox protein Rx ...    58   7e-09 
gi|3023467|sp|O14627|CDX4_HUMAN  Homeobox protein CDX-4 (Cau...    58   1e-08 
gi|13124743|sp|P31260|HXA10_HUMAN  Homeobox protein Hox-A10 ...    57   1e-08 
gi|6016208|sp|O15522|NK28_HUMAN  Homeobox protein Nkx-2.8 (H...    57   1e-08 
gi|1174819|sp|P43699|TITF1_HUMAN  Thyroid transcription fact...    57   2e-08 
gi|48428084|sp|Q8N693|ESX1L_HUMAN  Extraembryonic, spermatog...    57   2e-08 
gi|12644475|sp|Q99811|PRRX2_HUMAN  Paired mesoderm homeobox ...    56   4e-08 
gi|6093787|sp|O75360|PROP1_HUMAN  Homeobox protein prophet o...    56   4e-08 
gi|38605720|sp|P56177|DLX1_HUMAN  Homeobox protein DLX-1           56   4e-08 
gi|6174916|sp|P54821|PRRX1_HUMAN  Paired mesoderm homeobox p...    55   5e-08 
gi|20141539|sp|P31276|HXC13_HUMAN  Homeobox protein Hox-C13 ...    55   5e-08 
gi|6093723|sp|O75364|PITX3_HUMAN  Pituitary homeobox 3 (Home...    55   5e-08 
gi|6016205|sp|O95096|NKX22_HUMAN  Homeobox protein Nkx-2.2 (...    55   6e-08 
gi|6016211|sp|P78426|NK61_HUMAN  Homeobox protein Nkx-6.1          55   6e-08 
gi|2851475|sp|P35453|HXD13_HUMAN  Homeobox protein Hox-D13 (...    55   8e-08 
gi|3915680|sp|Q92988|DLX4_HUMAN  Homeobox protein DLX-4 (DLX...    55   8e-08 
gi|417425|sp|P32242|OTX1_HUMAN  Homeobox protein OTX1              54   1e-07 
gi|6174907|sp|Q99697|PITX2_HUMAN  Pituitary homeobox 2 (RIEG...    54   1e-07 
gi|417427|sp|P32243|OTX2_HUMAN  Homeobox protein OTX2              54   1e-07 
gi|2833256|sp|Q14774|HLX1_HUMAN  Homeobox protein HLX1 (Home...    54   1e-07 
gi|2828197|sp|P31271|HXA13_HUMAN  Homeobox protein Hox-A13 (...    54   2e-07 
gi|1730095|sp|P52954|LBX1_HUMAN  Transcription factor LBX1         54   2e-07 
gi|8247951|sp|P23759|PAX7_HUMAN  Paired box protein Pax-7 (H...    53   2e-07 
gi|8134644|sp|Q99453|PHX2B_HUMAN  Paired mesoderm homeobox p...    53   2e-07 
gi|8134640|sp|O14813|PHX2A_HUMAN  Paired mesoderm homeobox p...    53   2e-07 
gi|1172022|sp|P23760|PAX3_HUMAN  Paired box protein Pax-3 (H...    53   3e-07 
gi|3024482|sp|P78337|PITX1_HUMAN  Pituitary homeobox 1 (Hind...    53   3e-07 
gi|25009572|sp|Q9NZR4|VSX1_HUMAN  Visual system homeobox 1 (...    52   4e-07 
gi|50403792|sp|Q92826|HXB13_HUMAN  Homeobox protein Hox-B13        52   5e-07 
gi|6831676|sp|O15266|SHOX_HUMAN  Short stature homeobox prot...    52   5e-07 
gi|3023579|sp|Q15699|CRT1_HUMAN  Cartilage homeoprotein 1 (C...    52   5e-07 
gi|12230168|sp|Q9UBX0|HESX1_HUMAN  Homeobox expressed in ES ...    52   7e-07 
gi|17374365|sp|P58304|CHX10_HUMAN  Homeobox protein CHX10 (C...    52   7e-07 
gi|18202099|sp|O60902|SHOX2_HUMAN  Short stature homeobox pr...    52   7e-07 
gi|7531125|sp|P56915|GSC_HUMAN  Homeobox protein goosecoid         51   9e-07 
gi|547658|sp|Q03014|HHEX_HUMAN  Homeobox protein PRH (Hemato...    51   1e-06 
gi|6685480|sp|O15499|GSCL_HUMAN  Homeobox protein goosecoid-...    50   2e-06 
gi|13626112|sp|Q9H161|ALX4_HUMAN  Homeobox protein aristales...    50   2e-06 
gi|37537987|sp|Q9BQY4|PEP2_HUMAN  Paired-like homeobox prote...    49   6e-06 
gi|13626107|sp|O95076|ALX3_HUMAN  Homeobox protein aristales...    48   8e-06 
gi|37537960|sp|Q8NHV9|PEPP1_HUMAN  Paired-like homeobox prot...    47   1e-05 
gi|123402|sp|P09086|PO2F2_HUMAN  POU domain, class 2, transc...    44   1e-04 
gi|123408|sp|P28069|PIT1_HUMAN  Pituitary-specific positive ...    43   2e-04 
gi|8134548|sp|Q9UPM6|LHX61_HUMAN  LIM/homeobox protein Lhx6....    43   2e-04 
gi|28380240|sp|Q9C0A1|ZFHX2_HUMAN  Zinc finger homeobox prot...    42   4e-04 
gi|28201861|sp|Q9UKI9|PO2F3_HUMAN  POU domain, class 2, tran...    42   7e-04 
gi|60416412|sp|P48742|LHX1_HUMAN  LIM/homeobox protein Lhx1 ...    41   0.001 
gi|18202510|sp|Q15911|ATBF1_HUMAN  Alpha-fetoprotein enhance...    41   0.001 
gi|20138668|sp|Q969G2|LHX4_HUMAN  LIM/homeobox protein Lhx4        40   0.002 
gi|28201884|sp|P78424|PO6F2_HUMAN  POU domain, class 6, tran...    40   0.002 
gi|12643415|sp|Q9UBR4|LHX3_HUMAN  LIM/homeobox protein Lhx3        40   0.002 
gi|1709437|sp|Q03052|PO3F1_HUMAN  POU domain, class 3, trans...    40   0.002 
gi|2506535|sp|Q01851|PO4F1_HUMAN  POU domain, class 4, trans...    38   0.008 
gi|28202257|sp|P14859|PO2F1_HUMAN  POU domain, class 2, tran...    38   0.010 
gi|28202258|sp|P20265|PO3F2_HUMAN  POU domain, class 3, tran...    37   0.018 
gi|18202938|sp|Q9H2C1|LHX5_HUMAN  LIM/homeobox protein Lhx5        37   0.018 
gi|20978495|sp|Q96A47|ISL2_HUMAN  Insulin gene enhancer prot...    37   0.018 
gi|2506534|sp|P20264|PO33_HUMAN  POU domain, class 3, transc...    37   0.018 
gi|47606423|sp|P61371|ISL1_HUMAN  Insulin gene enhancer prot...    37   0.023 
gi|8247936|sp|P50458|LHX2_HUMAN  LIM/homeobox protein Lhx2 (...    36   0.040 
gi|2495300|sp|Q12837|PO42_HUMAN  POU domain, class 4, transc...    35   0.052 
gi|2495302|sp|Q15319|PO43_HUMAN  POU domain, class 4, transc...    35   0.052 
gi|12230598|sp|Q9NPC8|SIX2_HUMAN  Homeobox protein SIX2 (Sin...    35   0.052 
gi|12643346|sp|Q9NQ69|LHX9_HUMAN  LIM/homeobox protein Lhx9        35   0.052 
gi|2495306|sp|Q14863|PO6F1_HUMAN  POU domain, class 6, trans...    35   0.068 
gi|2495290|sp|Q15475|SIX1_HUMAN  Homeobox protein SIX1 (Sine...    35   0.068 
gi|1345629|sp|P49335|PO3F4_HUMAN  POU domain, class 3, trans...    35   0.068 
gi|27923801|sp|Q8TE12|LMX1A_HUMAN  LIM homeobox transcriptio...    35   0.068 
gi|12230578|sp|O95475|SIX6_HUMAN  Homeobox protein SIX6 (Sin...    35   0.068 
gi|6094293|sp|O95343|SIX3_HUMAN  Homeobox protein SIX3 (Sine...    35   0.088 
gi|13959566|sp|Q99717|SMAD5_HUMAN  Mothers against decapenta...    34   0.12  
gi|8247930|sp|O60663|LMX1B_HUMAN  LIM homeobox transcription...    34   0.12  
gi|729094|sp|P39880|CUTL1_HUMAN  CCAAT displacement protein ...    34   0.15  
gi|25453064|sp|Q9UPT6|JIP3_HUMAN  C-jun-amino-terminal kinas...    33   0.20  
gi|12230612|sp|Q9UIU6|SIX4_HUMAN  Homeobox protein SIX4 (Sin...    33   0.26  
gi|400659|sp|Q01860|PO5F1_HUMAN  POU domain, class 5, transc...    33   0.34  
gi|20141312|sp|O14529|CUTL2_HUMAN  Homeobox protein Cux-2 (C...    33   0.34  
gi|44889075|sp|Q9H4I2|ZHX3_HUMAN  Zinc fingers and homeoboxe...    32   0.57  
gi|50400978|sp|Q7Z5J4|RAI1_HUMAN  Retinoic acid induced prot...    32   0.57  
gi|12644347|sp|P78413|IRX4_HUMAN  Iroquois-class homeodomain...    31   0.98  
gi|22001988|sp|Q9Y566|SHK1_HUMAN  SH3 and multiple ankyrin r...    31   0.98  
gi|47117871|sp|P78411|IRX5_HUMAN  Iroquois-class homeodomain...    31   1.3   
gi|47117908|sp|Q9BZI1|IRX2_HUMAN  Iroquois-class homeodomain...    31   1.3   
gi|37999770|sp|Q9BYU1|PBX4_HUMAN  Pre-B-cell leukemia transc...    31   1.3   
gi|32363202|sp|Q969V6|MRTFA_HUMAN  Myocardin-related transcr...    30   1.7   
gi|28201858|sp|Q06416|PO5L_HUMAN  POU domain, class 5, trans...    30   1.7   
gi|28201859|sp|Q9BZV7|PO5M_HUMAN  POU domain, class 5, trans...    30   1.7   
gi|32363203|sp|Q9ULH7|MRTFB_HUMAN  Myocardin-related transcr...    30   1.7   
gi|44888553|sp|Q9Y6X8|ZHX2_HUMAN  Zinc fingers and homeoboxe...    30   2.2   
gi|38258651|sp|Q9NTG7|SIR3_HUMAN  NAD-dependent deacetylase ...    30   2.2   
gi|730281|sp|P40426|PBX3_HUMAN  Pre-B-cell leukemia transcri...    29   3.7   
gi|5921743|sp|Q12873|CHD3_HUMAN  Chromodomain helicase-DNA-b...    29   3.7   
gi|2500587|sp|Q15427|S3B4_HUMAN  Splicing factor 3B subunit ...    29   4.8   
gi|1352729|sp|P40425|PBX2_HUMAN  Pre-B-cell leukemia transcr...    29   4.8   
gi|14285363|sp|Q9NPZ5|B3G2_HUMAN  Galactosylgalactosylxylosy...    29   4.8   
gi|51316529|sp|Q9HA82|LSS4_HUMAN  LAG1 longevity assurance h...    29   4.8   
gi|38372866|sp|Q8NB14|UBP38_HUMAN  Ubiquitin carboxyl-termin...    29   4.8   
gi|34222891|sp|Q8IZJ4|RGRP_HUMAN  Ral-GDS related protein (h...    29   4.8   
gi|20141754|sp|P41778|PBX1_MOUSE  Pre-B-cell leukemia transc...    28   6.3   
gi|47117874|sp|P78415|IRX3_HUMAN  Iroquois-class homeodomain...    28   6.3   
gi|46396941|sp|Q8N196|SIX5_HUMAN  Homeobox protein SIX5 (DM ...    28   6.3   
gi|44888551|sp|Q9UKY1|ZHX1_HUMAN  Zinc fingers and homeoboxe...    28   8.3   
gi|51338800|sp|Q13207|TBX2_HUMAN  T-box transcription factor...    28   8.3   
gi|12230429|sp|P57723|PCBP4_HUMAN  Poly(rC)-binding protein ...    28   8.3   
gi|21264472|sp|P37198|NU62_HUMAN  Nuclear pore glycoprotein ...    28   8.3   
gi|14549162|sp|Q12967|GNDS_HUMAN  Ral guanine nucleotide dis...    28   8.3   
gi|47117872|sp|P78412|IRX6_HUMAN  Iroquois-class homeodomain...    28   8.3   
gi|30172872|sp|Q8IXJ9|ASXL1_HUMAN  Putative Polycomb group p...    28   8.3   
gi|12585199|sp|O00257|CBX4_HUMAN  Chromobox protein homolog ...    28   8.3   


Alignments

>gi|1352398|sp|P49640|EVX1_HUMAN   Homeobox even-skipped homolog protein 1 (EVX-1)
          Length = 407

 Score =  597 bits (1538), Expect = e-171
 Identities = 315/447 (70%), Positives = 315/447 (70%), Gaps = 83/447 (18%)

Query: 1   MESRKDMVVFLDGGQLGTLVGKRVSNLSEAVGSPLPEPPEKMVPRGCLSPRAVPPATXXX 60
           MESRKDMVVFLDGGQLGTLVGKRVSNLSEAVGSPLPEPPEKMVPRGCLSPRAVPPAT   
Sbjct: 1   MESRKDMVVFLDGGQLGTLVGKRVSNLSEAVGSPLPEPPEKMVPRGCLSPRAVPPATRER 60

Query: 61  X--------------------------------------XXXXXXXXXQPSSSDTESDFY 82
                                                           QPSSSDTESDFY
Sbjct: 61  GGGGPEEEPVDGLAGSAAGPGAEPQVAGAAMLGPGPPAPSVDSLSGQGQPSSSDTESDFY 120

Query: 83  EEIEVSCTPDCATGNAEYQHSKVPLLHPKEKELQGAGAPPFSEAYSPTSMAFVCLCLYTP 142
           EEIEVSCTPDCATGNAEYQ       H K                               
Sbjct: 121 EEIEVSCTPDCATGNAEYQ-------HSK------------------------------- 142

Query: 143 VLWTRCAGSGSEALVGSPNGGSETPKXXXXXXXXXXXXTLACSASDQMRRYRTAFTREQI 202
                  GSGSEALVGSPNGGSETPK            TLACSASDQMRRYRTAFTREQI
Sbjct: 143 -------GSGSEALVGSPNGGSETPKSNGGSGGGGSQGTLACSASDQMRRYRTAFTREQI 195

Query: 203 ARLEKEFYRENYVSRPRRCELAAALNLPETTIKVWFQNRRMKDKRQRLAMTWPHPADPAF 262
           ARLEKEFYRENYVSRPRRCELAAALNLPETTIKVWFQNRRMKDKRQRLAMTWPHPADPAF
Sbjct: 196 ARLEKEFYRENYVSRPRRCELAAALNLPETTIKVWFQNRRMKDKRQRLAMTWPHPADPAF 255

Query: 263 YTYMMSHAAAAGGLPYPFPSHLPLPYYSPVGLGXXXXXXXXXXPFSGSLRPLDTFRVLSQ 322
           YTYMMSHAAAAGGLPYPFPSHLPLPYYSPVGLG          PFSGSLRPLDTFRVLSQ
Sbjct: 256 YTYMMSHAAAAGGLPYPFPSHLPLPYYSPVGLGAASAASAAASPFSGSLRPLDTFRVLSQ 315

Query: 323 PYPRPELLCAFRHPPLYPGPAHGLGASAGGPCSCLACHSXXXXXXXXXXXXXSDFTCAST 382
           PYPRPELLCAFRHPPLYPGPAHGLGASAGGPCSCLACHS             SDFTCAST
Sbjct: 316 PYPRPELLCAFRHPPLYPGPAHGLGASAGGPCSCLACHSGPANGLAPRAAAASDFTCAST 375

Query: 383 SRSDSFLTFAPSVLSKASSVALDQREE 409
           SRSDSFLTFAPSVLSKASSVALDQREE
Sbjct: 376 SRSDSFLTFAPSVLSKASSVALDQREE 402



>gi|12231013|sp|Q03828|EVX2_HUMAN   Homeobox even-skipped homolog protein 2 (EVX-2)
          Length = 476

 Score =  285 bits (729), Expect = 3e-77
 Identities = 197/503 (39%), Positives = 237/503 (47%), Gaps = 134/503 (26%)

Query: 4   RKDMVVFLDGGQLGTLVGKRVSNLSEAVGSPLPEPPEKMVPRGCLSPRAVPPA------- 56
           RK+M++ ++ G      GKR SNLS + G+ + E  E       LSPR +P A       
Sbjct: 6   RKEMIL-MERGLHSPTAGKRFSNLSNSAGNAVLEALENSQHPARLSPR-LPSAPLHSALG 63

Query: 57  -----------------------TXXXXXXXXXXXXXQP---SSSDTESDFYEEIEVSCT 90
                                  T             +P   S +  E+D   ++EV C+
Sbjct: 64  ELPAKGKFEIDTLFNLQHTGSESTVSSEISSAAESRKKPGHYSEAAAEADMSSDVEVGCS 123

Query: 91  PDCATGNAEYQHSKVPLLHPKEKELQGAGAPPFSEAYSPTSMAFVCLCLYTPVLWTRCAG 150
              + G          L   + KE  G G      A   T+ A               +G
Sbjct: 124 ALRSPGG---------LGAAQLKENNGKGYAESGSAAGTTTSA---------------SG 159

Query: 151 SGSEALVGSPNGGSETPKXXXXXXXXXXXXTLACSASDQMRRYRTAFTREQIARLEKEFY 210
           SG  +L G   G   +                  S +DQ+RRYRTAFTREQIARLEKEFY
Sbjct: 160 SGLGSLHGGSGGSGGSAALGGSG-----------SGADQVRRYRTAFTREQIARLEKEFY 208

Query: 211 RENYVSRPRRCELAAALNLPETTIKVWFQNRRMKDKRQRLAMTWPHPADPAFYTYMMSHA 270
           RENYVSRPRRCELAAALNLPETTIKVWFQNRRMKDKRQRLAM+WPHPADP+FYTYMM+HA
Sbjct: 209 RENYVSRPRRCELAAALNLPETTIKVWFQNRRMKDKRQRLAMSWPHPADPSFYTYMMTHA 268

Query: 271 AAAGGLPYPFPSHLPLPYYSPVGL-------GXXXXXXXXXXPFSGSLRPLDTFRVLSQP 323
           AA G LPYPF SH+PL YY  VG+                  PF+ S+RPLDTFR LS P
Sbjct: 269 AATGSLPYPFHSHVPLHYYPHVGVTAAAAAAAASGAAAAASSPFATSIRPLDTFRALSHP 328

Query: 324 YPRPELLCAFRHPPLYPGPAHGLG---------------------ASAG-------GPCS 355
           Y RPELLC+FRHP LY  PA   G                     A+AG        PCS
Sbjct: 329 YSRPELLCSFRHPGLYQAPAAAAGLNSAASAAAAAAAAAAAASSAAAAGAPPSGGSAPCS 388

Query: 356 CLACHSXXXXXXXXXXXXX---------------------------SDFTC-ASTSRSDS 387
           CL+CHS                                        SDF C A+  RS+S
Sbjct: 389 CLSCHSSQSAAAAAAAAAAALGSRGGGGGGGGGGGGGGGGAGAGGGSDFGCSAAAPRSES 448

Query: 388 -FLTFAPSVLSKASSVALDQREE 409
            FL ++ +VLSK +    DQR+E
Sbjct: 449 GFLPYSAAVLSKTAVSPPDQRDE 471



>gi|20532295|sp|Q9UIW0|VAX2_HUMAN   Ventral anterior homeobox 2
          Length = 290

 Score = 77.8 bits (190), Expect = 9e-15
 Identities = 71/178 (39%), Positives = 83/178 (46%), Gaps = 10/178 (5%)

Query: 188 DQMRRYRTAFTREQIARLEKEFYRENYVSRPRRCELAAALNLPETTIKVWFQNRRMKDKR 247
           D+ +R RT+FT EQ+ RLE EF R  YV    R ELA  LNL ET +KVWFQNRR K K+
Sbjct: 100 DRPKRTRTSFTAEQLYRLEMEFQRCQYVVGRERTELARQLNLSETQVKVWFQNRRTKQKK 159

Query: 248 QR---LAMTWPHPADPAFYTYMMSHAAAAGG-LPYP-FPSHLPLPYYSPVGLGXXXXXXX 302
            +   L       A  AF T  +      G  L  P  PS L L    P GL        
Sbjct: 160 DQSRDLEKRASSSASEAFATSNILRLLEQGRLLSVPRAPSLLALTPSLP-GLPASHRGTS 218

Query: 303 XXXPFSGS--LRPLDTFRVLSQPYPRPELLCAFRHPPLYPGPA-HGLGASAGGPCSCL 357
              P + S  L PL +    S P P P     F   PL   PA + LG+SA  P S L
Sbjct: 219 LGDPRNSSPRLNPLSSASA-SPPLPPPLPAVCFSSAPLLDLPAGYELGSSAFEPYSWL 275



>gi|123270|sp|P14652|HXB2_HUMAN   Homeobox protein Hox-B2 (Hox-2H) (Hox-2.8) (K8)
          Length = 356

 Score = 76.6 bits (187), Expect = 2e-14
 Identities = 36/58 (62%), Positives = 43/58 (74%)

Query: 191 RRYRTAFTREQIARLEKEFYRENYVSRPRRCELAAALNLPETTIKVWFQNRRMKDKRQ 248
           RR RTA+T  Q+  LEKEF+   Y+ RPRR E+AA L+L E  +KVWFQNRRMK KRQ
Sbjct: 144 RRLRTAYTNTQLLELEKEFHFNKYLCRPRRVEIAALLDLTERQVKVWFQNRRMKHKRQ 201



>gi|6016292|sp|O43364|HXA2_HUMAN   Homeobox protein Hox-A2
          Length = 376

 Score = 76.6 bits (187), Expect = 2e-14
 Identities = 36/58 (62%), Positives = 43/58 (74%)

Query: 191 RRYRTAFTREQIARLEKEFYRENYVSRPRRCELAAALNLPETTIKVWFQNRRMKDKRQ 248
           RR RTA+T  Q+  LEKEF+   Y+ RPRR E+AA L+L E  +KVWFQNRRMK KRQ
Sbjct: 144 RRLRTAYTNTQLLELEKEFHFNKYLCRPRRVEIAALLDLTERQVKVWFQNRRMKHKRQ 201



>gi|1708540|sp|P52945|IPF1_HUMAN   Insulin promoter factor-1 (IPF-1) (Pancreas/duodenum homeobox-1)
           (PDX-1) (Islet/duodenum homeobox-1) (IDX-1)
           (Somatostatin transactivating factor-1) (STF-1) (Insulin
           upstream factor-1) (IUF-1) (Glucose-sensitive factor)
           (GSF)
          Length = 283

 Score = 76.6 bits (187), Expect = 2e-14
 Identities = 36/61 (59%), Positives = 45/61 (73%)

Query: 188 DQMRRYRTAFTREQIARLEKEFYRENYVSRPRRCELAAALNLPETTIKVWFQNRRMKDKR 247
           ++ +R RTA+TR Q+  LEKEF    Y+SRPRR ELA  LNL E  IK+WFQNRRMK K+
Sbjct: 144 EENKRTRTAYTRAQLLELEKEFLFNKYISRPRRVELAVMLNLTERHIKIWFQNRRMKWKK 203

Query: 248 Q 248
           +
Sbjct: 204 E 204



>gi|6166222|sp|P31249|HXD3_HUMAN   Homeobox protein Hox-D3 (Hox-4A)
          Length = 416

 Score = 73.2 bits (178), Expect = 2e-13
 Identities = 48/109 (44%), Positives = 60/109 (55%), Gaps = 14/109 (12%)

Query: 191 RRYRTAFTREQIARLEKEFYRENYVSRPRRCELAAALNLPETTIKVWFQNRRMKDKRQRL 250
           +R RTA+T  Q+  LEKEF+   Y+ RPRR E+A  LNL E  IK+WFQNRRMK K+ + 
Sbjct: 179 KRVRTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKDQK 238

Query: 251 AMTWPHPADPAFYTYMMS--------HAAAAGGLPYPFPSHLPLPYYSP 291
           A    H   PA  +   S        H A +G LP P P    L Y +P
Sbjct: 239 AKGILH--SPASQSPERSPPLGGAAGHVAYSGQLP-PVPG---LAYDAP 281



>gi|6016293|sp|O43365|HXA3_HUMAN   Homeobox protein Hox-A3 (Hox-1E)
          Length = 443

 Score = 73.2 bits (178), Expect = 2e-13
 Identities = 55/168 (32%), Positives = 70/168 (41%), Gaps = 33/168 (19%)

Query: 191 RRYRTAFTREQIARLEKEFYRENYVSRPRRCELAAALNLPETTIKVWFQNRRMKDKRQRL 250
           +R RTA+T  Q+  LEKEF+   Y+ RPRR E+A  LNL E  IK+WFQNRRMK K+ + 
Sbjct: 192 KRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKDQK 251

Query: 251 AMTW----------PHPADPAFYTYMMSHAAAAGGLPYPFPSHLPLPYYSPVGLGXXXXX 300
                           P  P    Y+ S  +    +PY   S  P P+  P         
Sbjct: 252 GKGMLTSSGGQSPSRSPVPPGAGGYLNSMHSLVNSVPYEPQS--PPPFSKP--------- 300

Query: 301 XXXXXPFSGSLRPLDTFRVLSQPYPRPELLCAFRHPPLYPGPAHGLGA 348
                       P  T+ +    YP     CA   PP     A G GA
Sbjct: 301 ------------PQGTYGLPPASYPASLPSCAPPPPPQKRYTAAGAGA 336



>gi|123268|sp|P14651|HXB3_HUMAN   Homeobox protein Hox-B3 (Hox-2G) (Hox-2.7)
          Length = 431

 Score = 72.0 bits (175), Expect = 5e-13
 Identities = 34/61 (55%), Positives = 43/61 (70%)

Query: 191 RRYRTAFTREQIARLEKEFYRENYVSRPRRCELAAALNLPETTIKVWFQNRRMKDKRQRL 250
           +R RTA+T  Q+  LEKEF+   Y+ RPRR E+A  LNL E  IK+WFQNRRMK K+ + 
Sbjct: 189 KRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLSERQIKIWFQNRRMKYKKDQK 248

Query: 251 A 251
           A
Sbjct: 249 A 249



>gi|1709078|sp|P50221|MEOX1_HUMAN   Homeobox protein MOX-1 (Mesenchyme homeobox 1)
          Length = 254

 Score = 72.0 bits (175), Expect = 5e-13
 Identities = 35/61 (57%), Positives = 44/61 (72%)

Query: 187 SDQMRRYRTAFTREQIARLEKEFYRENYVSRPRRCELAAALNLPETTIKVWFQNRRMKDK 246
           S + R+ RTAFT+EQ+  LE EF   NY++R RR E+A  L+L E  +KVWFQNRRMK K
Sbjct: 168 SSKARKERTAFTKEQLRELEAEFAHHNYLTRLRRYEIAVNLDLSERQVKVWFQNRRMKWK 227

Query: 247 R 247
           R
Sbjct: 228 R 228



>gi|45644931|sp|P50219|HLXB9_HUMAN   Homeobox protein HB9
          Length = 403

 Score = 71.6 bits (174), Expect = 7e-13
 Identities = 34/61 (55%), Positives = 44/61 (72%)

Query: 191 RRYRTAFTREQIARLEKEFYRENYVSRPRRCELAAALNLPETTIKVWFQNRRMKDKRQRL 250
           RR RTAFT +Q+  LE +F    Y+SRP+R E+A +L L ET +K+WFQNRRMK KR + 
Sbjct: 244 RRPRTAFTSQQLLELEHQFKLNKYLSRPKRFEVATSLMLTETQVKIWFQNRRMKWKRSKK 303

Query: 251 A 251
           A
Sbjct: 304 A 304



>gi|547692|sp|P17483|HXB4_HUMAN   Homeobox protein Hox-B4 (Hox-2F) (Hox-2.6)
          Length = 251

 Score = 71.2 bits (173), Expect = 9e-13
 Identities = 34/62 (54%), Positives = 45/62 (72%)

Query: 186 ASDQMRRYRTAFTREQIARLEKEFYRENYVSRPRRCELAAALNLPETTIKVWFQNRRMKD 245
           A  + +R RTA+TR+Q+  LEKEF+   Y++R RR E+A AL L E  IK+WFQNRRMK 
Sbjct: 158 AGGEPKRSRTAYTRQQVLELEKEFHYNRYLTRRRRVEIAHALCLSERQIKIWFQNRRMKW 217

Query: 246 KR 247
           K+
Sbjct: 218 KK 219



>gi|123271|sp|P14653|HXB1_HUMAN   Homeobox protein Hox-B1 (Hox-2I)
          Length = 301

 Score = 71.2 bits (173), Expect = 9e-13
 Identities = 35/67 (52%), Positives = 43/67 (64%)

Query: 194 RTAFTREQIARLEKEFYRENYVSRPRRCELAAALNLPETTIKVWFQNRRMKDKRQRLAMT 253
           RT FT  Q+  LEKEF+   Y+SR RR E+AA L L ET +K+WFQNRRMK K++     
Sbjct: 207 RTNFTTRQLTELEKEFHFNKYLSRARRVEIAATLELNETQVKIWFQNRRMKQKKREREGG 266

Query: 254 WPHPADP 260
              PA P
Sbjct: 267 RVPPAPP 273



>gi|1709079|sp|P50222|MEOX2_HUMAN   Homeobox protein MOX-2 (Mesenchyme homeobox 2) (Growth
           arrest-specific homeobox)
          Length = 303

 Score = 71.2 bits (173), Expect = 9e-13
 Identities = 35/57 (61%), Positives = 42/57 (73%)

Query: 191 RRYRTAFTREQIARLEKEFYRENYVSRPRRCELAAALNLPETTIKVWFQNRRMKDKR 247
           R+ RTAFT+EQI  LE EF   NY++R RR E+A  L+L E  +KVWFQNRRMK KR
Sbjct: 187 RKERTAFTKEQIRELEAEFAHHNYLTRLRRYEIAVNLDLTERQVKVWFQNRRMKWKR 243



>gi|6166216|sp|P49639|HXA1_HUMAN   Homeobox protein Hox-A1 (Hox-1F)
          Length = 335

 Score = 71.2 bits (173), Expect = 9e-13
 Identities = 36/73 (49%), Positives = 47/73 (64%), Gaps = 1/73 (1%)

Query: 189 QMRRYRTAFTREQIARLEKEFYRENYVSRPRRCELAAALNLPETTIKVWFQNRRMKDKRQ 248
           Q    RT FT +Q+  LEKEF+   Y++R RR E+AA+L L ET +K+WFQNRRMK K++
Sbjct: 228 QPNAVRTNFTTKQLTELEKEFHFNKYLTRARRVEIAASLQLNETQVKIWFQNRRMKQKKR 287

Query: 249 RLAMTWP-HPADP 260
                 P  PA P
Sbjct: 288 EKEGLLPISPATP 300



>gi|232262|sp|Q00444|HXC5_HUMAN   Homeobox protein Hox-C5 (Hox-3D) (CP11)
          Length = 222

 Score = 70.5 bits (171), Expect = 1e-12
 Identities = 52/149 (34%), Positives = 66/149 (44%), Gaps = 10/149 (6%)

Query: 106 PLLHPKEKELQGAGAP---PFSEAYSPTSMAFVCLCLYTPVLWTRCAGSGS----EALVG 158
           P  HP       A AP   P  +  +P +          P L  R   SG     +A  G
Sbjct: 67  PRAHPDRPACSAAAAPGHAPGRDEAAPLNPGMYSQKAARPALEERAKSSGEIKEEQAQTG 126

Query: 159 SPNGGSETPKXXXXXXXXXXXXTLACSASDQMRRYRTAFTREQIARLEKEFYRENYVSRP 218
            P G S+ P              L  S     +R RT++TR Q   LEKEF+   Y++R 
Sbjct: 127 QPAGLSQPP---APPQIYPWMTKLHMSHETDGKRSRTSYTRYQTLELEKEFHFNRYLTRR 183

Query: 219 RRCELAAALNLPETTIKVWFQNRRMKDKR 247
           RR E+A  L L E  IK+WFQNRRMK K+
Sbjct: 184 RRIEIANNLCLNERQIKIWFQNRRMKWKK 212



>gi|29336920|sp|Q9BZE3|BARH1_HUMAN   BarH-like 1 homeobox protein (FKSG31 protein)
          Length = 327

 Score = 70.5 bits (171), Expect = 1e-12
 Identities = 43/104 (41%), Positives = 57/104 (54%), Gaps = 15/104 (14%)

Query: 191 RRYRTAFTREQIARLEKEFYRENYVSRPRRCELAAALNLPETTIKVWFQNRRMKDKRQRL 250
           R+ RTAFT  Q+A+LE+ F R+ Y+S   R ELAA+LNL +T +K W+QNRR K KRQ  
Sbjct: 179 RKARTAFTDHQLAQLERSFERQKYLSVQDRMELAASLNLTDTQVKTWYQNRRTKWKRQ-- 236

Query: 251 AMTWPHPADPAFYTYMMSHAAAAGGLPYPFPSHLPLPYYSPVGL 294
                     A    +++ A     L   FPS    PY+ P  L
Sbjct: 237 ---------TAVGLELLAEAGNYSALQRMFPS----PYFYPQSL 267



>gi|123279|sp|P09017|HXC4_HUMAN   Homeobox protein Hox-C4 (Hox-3E) (CP19)
          Length = 264

 Score = 69.7 bits (169), Expect = 2e-12
 Identities = 37/72 (51%), Positives = 48/72 (66%), Gaps = 1/72 (1%)

Query: 191 RRYRTAFTREQIARLEKEFYRENYVSRPRRCELAAALNLPETTIKVWFQNRRMKDKR-QR 249
           +R R A+TR+Q+  LEKEF+   Y++R RR E+A +L L E  IK+WFQNRRMK K+  R
Sbjct: 157 KRSRAAYTRQQVLELEKEFHYNRYLTRRRRIEIAHSLCLSERQIKIWFQNRRMKWKKDHR 216

Query: 250 LAMTWPHPADPA 261
           L  T    A PA
Sbjct: 217 LPNTKVRSAPPA 228



>gi|13959687|sp|P35548|MSX2_HUMAN   Homeobox protein MSX-2 (Hox-8)
          Length = 267

 Score = 69.3 bits (168), Expect = 3e-12
 Identities = 46/121 (38%), Positives = 66/121 (54%), Gaps = 17/121 (14%)

Query: 191 RRYRTAFTREQIARLEKEFYRENYVSRPRRCELAAALNLPETTIKVWFQNRRMKDKR--- 247
           R+ RT FT  Q+  LE++F ++ Y+S   R E +++LNL ET +K+WFQNRR K KR   
Sbjct: 143 RKPRTPFTTSQLLALERKFRQKQYLSIAERAEFSSSLNLTETQVKIWFQNRRAKAKRLQE 202

Query: 248 ---QRLAMTWPHPADPAFYTYMMS-----HAAAAGGLPYPFPSH-LPLP----YYSPVGL 294
              ++L M    P  P+ ++          AA+  G  YPF    LP+P    Y +PVG 
Sbjct: 203 AELEKLKMA-AKPMLPSSFSLPFPISSPLQAASIYGASYPFHRPVLPIPPVGLYATPVGY 261

Query: 295 G 295
           G
Sbjct: 262 G 262



>gi|27923786|sp|Q9H4S2|GSHI_HUMAN   Homeobox protein GSH-1
          Length = 264

 Score = 68.6 bits (166), Expect = 6e-12
 Identities = 34/67 (50%), Positives = 47/67 (70%), Gaps = 3/67 (4%)

Query: 185 SASDQM---RRYRTAFTREQIARLEKEFYRENYVSRPRRCELAAALNLPETTIKVWFQNR 241
           S+S+Q+   +R RTAFT  Q+  LE+EF    Y+SR RR E+A  LNL E  +K+WFQNR
Sbjct: 139 SSSNQLPSSKRMRTAFTSTQLLELEREFASNMYLSRLRRIEIATYLNLSEKQVKIWFQNR 198

Query: 242 RMKDKRQ 248
           R+K K++
Sbjct: 199 RVKHKKE 205



>gi|6016210|sp|P78367|NK32_HUMAN   Homeobox protein Nkx-3.2 (Bagpipe homeobox protein homolog 1)
          Length = 333

 Score = 68.6 bits (166), Expect = 6e-12
 Identities = 30/61 (49%), Positives = 43/61 (70%)

Query: 191 RRYRTAFTREQIARLEKEFYRENYVSRPRRCELAAALNLPETTIKVWFQNRRMKDKRQRL 250
           +R R AF+  Q+  LE+ F  + Y+S P R +LAA+L L ET +K+WFQNRR K KR+++
Sbjct: 207 KRSRAAFSHAQVFELERRFNHQRYLSGPERADLAASLKLTETQVKIWFQNRRYKTKRRQM 266

Query: 251 A 251
           A
Sbjct: 267 A 267



>gi|1345720|sp|P47902|CDX1_HUMAN   Homeobox protein CDX-1 (Caudal-type homeobox protein 1)
          Length = 265

 Score = 68.6 bits (166), Expect = 6e-12
 Identities = 55/175 (31%), Positives = 75/175 (42%), Gaps = 20/175 (11%)

Query: 82  YEEIEVSCTPDCATGNAEYQHSKVPLLHPKEKELQGAGAPPFSEAYSPTSMAFVCLCLYT 141
           Y  +E +  P  A G         P   PK+      G  P + A SP S+AF     ++
Sbjct: 48  YSHVEPAPAPPTAWG--------APFPAPKDDWAAAYGPGPAAPAASPASLAFGPPPDFS 99

Query: 142 PVLWTRCAGSGSEALVGSPNGGSETPKXXXXXXXXXXXXTLACSA------SDQMR---R 192
           PV      G G   L+  P GG  TP                  A      S + R   +
Sbjct: 100 PVPAPPGPGPG---LLAQPLGGPGTPSSPGAQRPTPYEWMRRSVAAGGGGGSGKTRTKDK 156

Query: 193 YRTAFTREQIARLEKEFYRENYVSRPRRCELAAALNLPETTIKVWFQNRRMKDKR 247
           YR  +T  Q   LEKEF+   Y++  R+ ELAA L L E  +K+WFQNRR K+++
Sbjct: 157 YRVVYTDHQRLELEKEFHYSRYITIRRKSELAANLGLTERQVKIWFQNRRAKERK 211



>gi|20141491|sp|P09016|HXD4_HUMAN   Homeobox protein Hox-D4 (Hox-4B) (Hox-5.1) (HHO.C13)
          Length = 255

 Score = 68.2 bits (165), Expect = 7e-12
 Identities = 32/57 (56%), Positives = 42/57 (73%)

Query: 191 RRYRTAFTREQIARLEKEFYRENYVSRPRRCELAAALNLPETTIKVWFQNRRMKDKR 247
           +R RTA+TR+Q+  LEKEF+   Y++R RR E+A  L L E  IK+WFQNRRMK K+
Sbjct: 155 KRSRTAYTRQQVLELEKEFHFNRYLTRRRRIEIAHTLCLSERQIKIWFQNRRMKWKK 211



>gi|12644308|sp|P52951|GBX2_HUMAN   Homeobox protein GBX-2 (Gastrulation and brain-specific homeobox
           protein 2)
          Length = 348

 Score = 68.2 bits (165), Expect = 7e-12
 Identities = 37/97 (38%), Positives = 51/97 (52%)

Query: 151 SGSEALVGSPNGGSETPKXXXXXXXXXXXXTLACSASDQMRRYRTAFTREQIARLEKEFY 210
           S  + L G      E P               + +++ + RR RTAFT EQ+  LEKEF+
Sbjct: 208 SSDDNLTGQAAHKEEDPGHALEETPPSSGAAGSTTSTGKNRRRRTAFTSEQLLELEKEFH 267

Query: 211 RENYVSRPRRCELAAALNLPETTIKVWFQNRRMKDKR 247
            + Y+S   R ++A AL L E  +K+WFQNRR K KR
Sbjct: 268 CKKYLSLTERSQIAHALKLSEVQVKIWFQNRRAKWKR 304



>gi|6166217|sp|Q00056|HXA4_HUMAN   Homeobox protein Hox-A4 (Hox-1D) (Hox-1.4)
          Length = 320

 Score = 67.8 bits (164), Expect = 9e-12
 Identities = 31/57 (54%), Positives = 42/57 (73%)

Query: 191 RRYRTAFTREQIARLEKEFYRENYVSRPRRCELAAALNLPETTIKVWFQNRRMKDKR 247
           +R RTA+TR+Q+  LEKEF+   Y++R RR E+A  L L E  +K+WFQNRRMK K+
Sbjct: 216 KRSRTAYTRQQVLELEKEFHFNRYLTRRRRIEIAHTLCLSERQVKIWFQNRRMKWKK 272



>gi|20138327|sp|Q9BZM3|GSH2_HUMAN   Homeobox protein GSH-2
          Length = 304

 Score = 67.4 bits (163), Expect = 1e-11
 Identities = 31/58 (53%), Positives = 41/58 (70%)

Query: 191 RRYRTAFTREQIARLEKEFYRENYVSRPRRCELAAALNLPETTIKVWFQNRRMKDKRQ 248
           +R RTAFT  Q+  LE+EF    Y+SR RR E+A  LNL E  +K+WFQNRR+K K++
Sbjct: 203 KRMRTAFTSTQLLELEREFSSNMYLSRLRRIEIATYLNLSEKQVKIWFQNRRVKHKKE 260



>gi|57015304|sp|Q04741|EMX1_HUMAN   Homeobox protein EMX1 (Empty spiracles homolog 1) (Empty
           spiracles-like protein 1)
          Length = 257

 Score = 67.0 bits (162), Expect = 2e-11
 Identities = 33/65 (50%), Positives = 44/65 (67%)

Query: 191 RRYRTAFTREQIARLEKEFYRENYVSRPRRCELAAALNLPETTIKVWFQNRRMKDKRQRL 250
           +R RTAF+  Q+ RLE+ F + +YV    R +LA +L+L ET +KVWFQNRR K KRQ+L
Sbjct: 160 KRIRTAFSPSQLLRLERAFEKNHYVVGAERKQLAGSLSLSETQVKVWFQNRRTKYKRQKL 219

Query: 251 AMTWP 255
               P
Sbjct: 220 EEEGP 224



>gi|47117915|sp|Q9NY43|BARH2_HUMAN   BarH-like 2 homeobox protein
          Length = 387

 Score = 67.0 bits (162), Expect = 2e-11
 Identities = 54/159 (33%), Positives = 74/159 (46%), Gaps = 27/159 (16%)

Query: 191 RRYRTAFTREQIARLEKEFYRENYVSRPRRCELAAALNLPETTIKVWFQNRRMKDKRQRL 250
           R+ RTAF+  Q+ +LE+ F R+ Y+S   R +LAAALNL +T +K W+QNRR K KRQ  
Sbjct: 233 RKARTAFSDHQLNQLERSFERQKYLSVQDRMDLAAALNLTDTQVKTWYQNRRTKWKRQ-- 290

Query: 251 AMTWPHPADPAFYTYMMSHAAAAGGLPYPFPSHLPLPY-YSPVGLGXXXXXXXXXXPFSG 309
                     A    +++ A     L   FPS    PY Y P  LG            + 
Sbjct: 291 ---------TAVGLELLAEAGNYSALQRMFPS----PYFYHPSLLGSMDSTTA-----AA 332

Query: 310 SLRPLDTFRVLSQPYPRPELLCAFRHPPLYPGP-AHGLG 347
           +   + +    + P P P+L       PL P    HGLG
Sbjct: 333 AAAAMYSSMYRTPPAPHPQL-----QRPLVPRVLIHGLG 366



>gi|52788238|sp|P20719|HXA5_HUMAN   Homeobox protein Hox-A5 (Hox-1C)
          Length = 270

 Score = 66.6 bits (161), Expect = 2e-11
 Identities = 33/57 (57%), Positives = 41/57 (71%)

Query: 191 RRYRTAFTREQIARLEKEFYRENYVSRPRRCELAAALNLPETTIKVWFQNRRMKDKR 247
           +R RTA+TR Q   LEKEF+   Y++R RR E+A AL L E  IK+WFQNRRMK K+
Sbjct: 196 KRARTAYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLSERQIKIWFQNRRMKWKK 252



>gi|400000|sp|P09067|HXB5_HUMAN   Homeobox protein Hox-B5 (Hox-2A) (HHO.C10) (HU-1)
          Length = 269

 Score = 66.6 bits (161), Expect = 2e-11
 Identities = 33/57 (57%), Positives = 41/57 (71%)

Query: 191 RRYRTAFTREQIARLEKEFYRENYVSRPRRCELAAALNLPETTIKVWFQNRRMKDKR 247
           +R RTA+TR Q   LEKEF+   Y++R RR E+A AL L E  IK+WFQNRRMK K+
Sbjct: 195 KRARTAYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLSERQIKIWFQNRRMKWKK 251



>gi|12230077|sp|Q14549|GBX1_HUMAN   Homeobox protein GBX-1 (Gastrulation and brain-specific homeobox
           protein 1)
          Length = 139

 Score = 66.6 bits (161), Expect = 2e-11
 Identities = 32/57 (56%), Positives = 40/57 (70%)

Query: 191 RRYRTAFTREQIARLEKEFYRENYVSRPRRCELAAALNLPETTIKVWFQNRRMKDKR 247
           RR RTAFT EQ+  LEKEF+ + Y+S   R ++A AL L E  +K+WFQNRR K KR
Sbjct: 38  RRRRTAFTSEQLLELEKEFHCKKYLSLTERSQIAHALKLSEVQVKIWFQNRRAKWKR 94



>gi|17377578|sp|Q99801|NKX31_HUMAN   Homeobox protein Nkx-3.1
          Length = 234

 Score = 65.5 bits (158), Expect = 5e-11
 Identities = 29/61 (47%), Positives = 41/61 (67%)

Query: 191 RRYRTAFTREQIARLEKEFYRENYVSRPRRCELAAALNLPETTIKVWFQNRRMKDKRQRL 250
           +R R AF+  Q+  LE++F  + Y+S P R  LA  L L ET +K+WFQNRR K KR++L
Sbjct: 125 KRSRAAFSHTQVIELERKFSHQKYLSAPERAHLAKNLKLTETQVKIWFQNRRYKTKRKQL 184

Query: 251 A 251
           +
Sbjct: 185 S 185



>gi|27923817|sp|Q9H2Z4|NK24_HUMAN   Homeobox protein Nkx-2.4 (Homeobox protein NKX2.4) (Homeobox
           protein NK-2 homolog D)
          Length = 353

 Score = 65.5 bits (158), Expect = 5e-11
 Identities = 53/167 (31%), Positives = 69/167 (41%), Gaps = 19/167 (11%)

Query: 183 ACSASDQMRRYRTAFTREQIARLEKEFYRENYVSRPRRCELAAALNLPETTIKVWFQNRR 242
           A +A+   R+ R  F++ Q+  LE+ F ++ Y+S P R  LA+ ++L  T +K+WFQN R
Sbjct: 182 AAAAAAPRRKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHR 241

Query: 243 MKDKRQRLAMTWPHPADPAFYTYMMSHAAAAGGL-PYPFPSHLPLPYYSPVGLGXXXXXX 301
            K KRQ          D A            GGL P P P   P     PV +       
Sbjct: 242 YKMKRQ--------AKDKA-----AQQLQQEGGLGPPPPPPPSPRRAAVPVLVKDGKPCQ 288

Query: 302 XXXXPFSGSLRPLDTFRVLSQPYPRPELLCAFRHPPLYPGPAHGLGA 348
               P  G   P         P P PEL      PP   GP  GL A
Sbjct: 289 GASTPTPGQAGPQP-----PAPTPAPELEELSPSPPALHGPGGGLAA 330



>gi|17378648|sp|Q9GZZ0|HXD1_HUMAN   Homeobox protein Hox-D1
          Length = 328

 Score = 65.1 bits (157), Expect = 6e-11
 Identities = 28/55 (50%), Positives = 41/55 (74%)

Query: 194 RTAFTREQIARLEKEFYRENYVSRPRRCELAAALNLPETTIKVWFQNRRMKDKRQ 248
           RT F+ +Q+  LEKEF+   Y++R RR E+A  L+L +T +K+WFQNRRMK K++
Sbjct: 233 RTNFSTKQLTELEKEFHFNKYLTRARRIEIANCLHLNDTQVKIWFQNRRMKQKKR 287



>gi|17378385|sp|P31267|HXA6_HUMAN   Homeobox protein Hox-A6 (Hox-1B)
          Length = 233

 Score = 65.1 bits (157), Expect = 6e-11
 Identities = 33/68 (48%), Positives = 43/68 (63%)

Query: 191 RRYRTAFTREQIARLEKEFYRENYVSRPRRCELAAALNLPETTIKVWFQNRRMKDKRQRL 250
           RR R  +TR Q   LEKEF+   Y++R RR E+A AL L E  IK+WFQNRRMK K++  
Sbjct: 156 RRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIANALCLTERQIKIWFQNRRMKWKKENK 215

Query: 251 AMTWPHPA 258
            +    P+
Sbjct: 216 LINSTQPS 223



>gi|19862512|sp|Q04743|EMX2_HUMAN   Homeobox protein EMX2 (Empty spiracles homolog 2) (Empty
           spiracles-like protein 2)
          Length = 252

 Score = 64.7 bits (156), Expect = 8e-11
 Identities = 32/60 (53%), Positives = 42/60 (70%)

Query: 191 RRYRTAFTREQIARLEKEFYRENYVSRPRRCELAAALNLPETTIKVWFQNRRMKDKRQRL 250
           +R RTAF+  Q+ RLE  F + +YV    R +LA +L+L ET +KVWFQNRR K KRQ+L
Sbjct: 155 KRIRTAFSPSQLLRLEHAFEKNHYVVGAERKQLAHSLSLTETQVKVWFQNRRTKFKRQKL 214



>gi|13124738|sp|P17509|HXB6_HUMAN   Homeobox protein Hox-B6 (Hox-2B) (Hox-2.2) (HU-2)
          Length = 224

 Score = 64.7 bits (156), Expect = 8e-11
 Identities = 32/58 (55%), Positives = 40/58 (68%)

Query: 191 RRYRTAFTREQIARLEKEFYRENYVSRPRRCELAAALNLPETTIKVWFQNRRMKDKRQ 248
           RR R  +TR Q   LEKEF+   Y++R RR E+A AL L E  IK+WFQNRRMK K++
Sbjct: 147 RRGRQTYTRYQTLELEKEFHYNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKE 204



>gi|3915721|sp|P31268|HXA7_HUMAN   Homeobox protein Hox-A7 (Hox-1A) (Hox 1.1)
          Length = 230

 Score = 64.3 bits (155), Expect = 1e-10
 Identities = 32/64 (50%), Positives = 42/64 (65%)

Query: 185 SASDQMRRYRTAFTREQIARLEKEFYRENYVSRPRRCELAAALNLPETTIKVWFQNRRMK 244
           S+    +R R  +TR Q   LEKEF+   Y++R RR E+A AL L E  IK+WFQNRRMK
Sbjct: 125 SSGPDRKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMK 184

Query: 245 DKRQ 248
            K++
Sbjct: 185 WKKE 188



>gi|1708211|sp|P52952|NK25_HUMAN   Homeobox protein Nkx-2.5 (Homeobox protein NK-2 homolog E)
           (Cardiac-specific homeobox) (Homeobox protein CSX)
          Length = 324

 Score = 63.9 bits (154), Expect = 1e-10
 Identities = 33/77 (42%), Positives = 45/77 (58%), Gaps = 6/77 (7%)

Query: 191 RRYRTAFTREQIARLEKEFYRENYVSRPRRCELAAALNLPETTIKVWFQNRRMKDKRQRL 250
           R+ R  F++ Q+  LE+ F ++ Y+S P R +LA+ L L  T +K+WFQNRR K KRQR 
Sbjct: 139 RKPRVLFSQAQVYELERRFKQQRYLSAPERDQLASVLKLTSTQVKIWFQNRRYKCKRQRQ 198

Query: 251 AMTW------PHPADPA 261
             T       P P  PA
Sbjct: 199 DQTLELVGLPPPPPPPA 215



>gi|6174889|sp|P26367|PAX6_HUMAN   Paired box protein Pax-6 (Oculorhombin) (Aniridia, type II protein)
          Length = 422

 Score = 63.5 bits (153), Expect = 2e-10
 Identities = 34/87 (39%), Positives = 46/87 (52%)

Query: 162 GGSETPKXXXXXXXXXXXXTLACSASDQMRRYRTAFTREQIARLEKEFYRENYVSRPRRC 221
           GG E                +      +++R RT+FT+EQI  LEKEF R +Y     R 
Sbjct: 182 GGGENTNSISSNGEDSDEAQMRLQLKRKLQRNRTSFTQEQIEALEKEFERTHYPDVFARE 241

Query: 222 ELAAALNLPETTIKVWFQNRRMKDKRQ 248
            LAA ++LPE  I+VWF NRR K +R+
Sbjct: 242 RLAAKIDLPEARIQVWFSNRRAKWRRE 268



>gi|12644227|sp|P35452|HXD12_HUMAN   Homeobox protein Hox-D12 (Hox-4H)
          Length = 275

 Score = 63.5 bits (153), Expect = 2e-10
 Identities = 28/59 (47%), Positives = 41/59 (69%)

Query: 189 QMRRYRTAFTREQIARLEKEFYRENYVSRPRRCELAAALNLPETTIKVWFQNRRMKDKR 247
           + R+ R  +T++QIA LE EF    +++R +R EL+  LNL +  +K+WFQNRRMK KR
Sbjct: 206 EARKKRKPYTKQQIAELENEFLVNEFINRQKRKELSNRLNLSDQQVKIWFQNRRMKKKR 264



>gi|13124744|sp|P31270|HXA11_HUMAN   Homeobox protein Hox-A11 (Hox-1I)
          Length = 313

 Score = 63.2 bits (152), Expect = 2e-10
 Identities = 26/63 (41%), Positives = 44/63 (69%)

Query: 185 SASDQMRRYRTAFTREQIARLEKEFYRENYVSRPRRCELAAALNLPETTIKVWFQNRRMK 244
           S+  + R+ R  +T+ QI  LE+EF+   Y+++ +R +L+  LNL +  +K+WFQNRRMK
Sbjct: 236 SSGQRTRKKRCPYTKYQIRELEREFFFSVYINKEKRLQLSRMLNLTDRQVKIWFQNRRMK 295

Query: 245 DKR 247
           +K+
Sbjct: 296 EKK 298



>gi|123255|sp|P09629|HXB7_HUMAN   Homeobox protein Hox-B7 (Hox-2C) (HHO.C1)
          Length = 217

 Score = 63.2 bits (152), Expect = 2e-10
 Identities = 31/64 (48%), Positives = 41/64 (64%)

Query: 185 SASDQMRRYRTAFTREQIARLEKEFYRENYVSRPRRCELAAALNLPETTIKVWFQNRRMK 244
           S+    +R R  +TR Q   LEKEF+   Y++R RR E+A  L L E  IK+WFQNRRMK
Sbjct: 132 SSGTDRKRGRQTYTRYQTLELEKEFHYNRYLTRRRRIEIAHTLCLTERQIKIWFQNRRMK 191

Query: 245 DKRQ 248
            K++
Sbjct: 192 WKKE 195



>gi|27923733|sp|Q96QS3|ARX_HUMAN   Homeobox protein ARX (Aristaless-related homeobox)
          Length = 562

 Score = 62.4 bits (150), Expect = 4e-10
 Identities = 39/102 (38%), Positives = 52/102 (50%), Gaps = 9/102 (8%)

Query: 189 QMRRYRTAFTREQIARLEKEFYRENYVSRPRRCELAAALNLPETTIKVWFQNRRMKDKRQ 248
           + RRYRT FT  Q+  LE+ F + +Y     R ELA  L+L E  ++VWFQNRR K +++
Sbjct: 327 KQRRYRTTFTSYQLEELERAFQKTHYPDVFTREELAMRLDLTEARVQVWFQNRRAKWRKR 386

Query: 249 RLAMTWPHP-----ADPAFYTYMMSHAAAAGGLPYPFPSHLP 285
             A    HP       P   T+ +S    A     PFP H P
Sbjct: 387 EKAGAQTHPPGLPFPGPLSATHPLSPYLDAS----PFPPHHP 424



>gi|12644203|sp|P31277|HXD11_HUMAN   Homeobox protein Hox-D11 (Hox-4F)
          Length = 338

 Score = 62.4 bits (150), Expect = 4e-10
 Identities = 26/62 (41%), Positives = 43/62 (69%)

Query: 186 ASDQMRRYRTAFTREQIARLEKEFYRENYVSRPRRCELAAALNLPETTIKVWFQNRRMKD 245
           A  + R+ R  +T+ QI  LE+EF+   Y+++ +R +L+  LNL +  +K+WFQNRRMK+
Sbjct: 262 APQRSRKKRCPYTKYQIRELEREFFFNVYINKEKRLQLSRMLNLTDRQVKIWFQNRRMKE 321

Query: 246 KR 247
           K+
Sbjct: 322 KK 323



>gi|20141493|sp|P09630|HXC6_HUMAN   Homeobox protein Hox-C6 (Hox-3C) (HHO.C8) (CP25)
          Length = 235

 Score = 62.4 bits (150), Expect = 4e-10
 Identities = 31/58 (53%), Positives = 40/58 (68%)

Query: 191 RRYRTAFTREQIARLEKEFYRENYVSRPRRCELAAALNLPETTIKVWFQNRRMKDKRQ 248
           RR R  ++R Q   LEKEF+   Y++R RR E+A AL L E  IK+WFQNRRMK K++
Sbjct: 142 RRGRQIYSRYQTLELEKEFHFNRYLTRRRRIEIANALCLTERQIKIWFQNRRMKWKKE 199



>gi|13431329|sp|Q9UMQ3|BARX2_HUMAN   Homeobox protein BarH-like 2
          Length = 254

 Score = 62.0 bits (149), Expect = 5e-10
 Identities = 31/70 (44%), Positives = 42/70 (60%)

Query: 191 RRYRTAFTREQIARLEKEFYRENYVSRPRRCELAAALNLPETTIKVWFQNRRMKDKRQRL 250
           RR RT FT  Q+  LEK+F ++ Y+S P R +LA +L L +  +K W+QNRRMK K+  L
Sbjct: 109 RRSRTIFTELQLMGLEKKFQKQKYLSTPDRLDLAQSLGLTQLQVKTWYQNRRMKWKKMVL 168

Query: 251 AMTWPHPADP 260
                 P  P
Sbjct: 169 KGGQEAPTKP 178



>gi|12644330|sp|P56179|DLX6_HUMAN   Homeobox protein DLX-6
          Length = 175

 Score = 62.0 bits (149), Expect = 5e-10
 Identities = 35/108 (32%), Positives = 59/108 (54%), Gaps = 11/108 (10%)

Query: 189 QMRRYRTAFTREQIARLEKEFYRENYVSRPRRCELAAALNLPETTIKVWFQNRRMKDKRQ 248
           ++R+ RT ++  Q+  L   F +  Y++ P R ELAA+L L +T +K+WFQN+R K K+ 
Sbjct: 48  KIRKPRTIYSSLQLQALNHRFQQTQYLALPERAELAASLGLTQTQVKIWFQNKRSKFKKL 107

Query: 249 RLAMTWPHPADPAFYTYMMSH-----------AAAAGGLPYPFPSHLP 285
               + PH +DP   +  +S            +A+A G+  P  S++P
Sbjct: 108 LKQGSNPHESDPLQGSAALSPRSPALPPVWDVSASAKGVSMPPNSYMP 155



>gi|399982|sp|P31314|TLX1_HUMAN   T-cell leukemia homeobox protein 1 (Homeobox protein Hox-11) (TCL-3
           proto-oncogene)
          Length = 330

 Score = 62.0 bits (149), Expect = 5e-10
 Identities = 28/58 (48%), Positives = 39/58 (67%)

Query: 191 RRYRTAFTREQIARLEKEFYRENYVSRPRRCELAAALNLPETTIKVWFQNRRMKDKRQ 248
           ++ RT+FTR QI  LEK F+R+ Y++   R  LA AL + +  +K WFQNRR K +RQ
Sbjct: 202 KKPRTSFTRLQICELEKRFHRQKYLASAERAALAKALKMTDAQVKTWFQNRRTKWRRQ 259



>gi|27923815|sp|Q8TAU0|NKX23_HUMAN   Homeobox protein Nkx-2.3 (Homeobox protein NKX-2.3) (Homeobox
           protein NK-2 homolog C)
          Length = 364

 Score = 62.0 bits (149), Expect = 5e-10
 Identities = 28/59 (47%), Positives = 40/59 (67%)

Query: 191 RRYRTAFTREQIARLEKEFYRENYVSRPRRCELAAALNLPETTIKVWFQNRRMKDKRQR 249
           R+ R  F++ Q+  LE+ F ++ Y+S P R  LA++L L  T +K+WFQNRR K KRQR
Sbjct: 149 RKPRVLFSQAQVFELERRFKQQRYLSAPEREHLASSLKLTSTQVKIWFQNRRYKCKRQR 207



>gi|20141537|sp|P31274|HXC9_HUMAN   Homeobox protein Hox-C9 (Hox-3B)
          Length = 260

 Score = 61.6 bits (148), Expect = 7e-10
 Identities = 30/63 (47%), Positives = 39/63 (61%)

Query: 191 RRYRTAFTREQIARLEKEFYRENYVSRPRRCELAAALNLPETTIKVWFQNRRMKDKRQRL 250
           R+ R  +T+ Q   LEKEF    Y++R RR E+A  LNL E  +K+WFQNRRMK K+   
Sbjct: 193 RKKRCPYTKYQTLELEKEFLFNMYLTRDRRYEVARVLNLTERQVKIWFQNRRMKMKKMNK 252

Query: 251 AMT 253
             T
Sbjct: 253 EKT 255



>gi|6166219|sp|P31269|HXA9_HUMAN   Homeobox protein Hox-A9 (Hox-1G)
          Length = 272

 Score = 61.6 bits (148), Expect = 7e-10
 Identities = 29/57 (50%), Positives = 38/57 (66%)

Query: 191 RRYRTAFTREQIARLEKEFYRENYVSRPRRCELAAALNLPETTIKVWFQNRRMKDKR 247
           R+ R  +T+ Q   LEKEF    Y++R RR E+A  LNL E  +K+WFQNRRMK K+
Sbjct: 207 RKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKK 263



>gi|123286|sp|P28356|HXD9_HUMAN   Homeobox protein Hox-D9 (Hox-4C) (Hox-5.2)
          Length = 342

 Score = 60.8 bits (146), Expect = 1e-09
 Identities = 29/57 (50%), Positives = 38/57 (66%)

Query: 191 RRYRTAFTREQIARLEKEFYRENYVSRPRRCELAAALNLPETTIKVWFQNRRMKDKR 247
           R+ R  +T+ Q   LEKEF    Y++R RR E+A  LNL E  +K+WFQNRRMK K+
Sbjct: 276 RKKRCPYTKYQTLELEKEFLFNMYLTRDRRYEVARILNLTERQVKIWFQNRRMKMKK 332



>gi|2506529|sp|Q07687|DLX2_HUMAN   Homeobox protein DLX-2
          Length = 328

 Score = 60.8 bits (146), Expect = 1e-09
 Identities = 26/59 (44%), Positives = 42/59 (71%)

Query: 189 QMRRYRTAFTREQIARLEKEFYRENYVSRPRRCELAAALNLPETTIKVWFQNRRMKDKR 247
           ++R+ RT ++  Q+A L++ F +  Y++ P R ELAA+L L +T +K+WFQNRR K K+
Sbjct: 151 KVRKPRTIYSSFQLAALQRRFQKTQYLALPERAELAASLGLTQTQVKIWFQNRRSKFKK 209



>gi|23503066|sp|P28360|MSX1_HUMAN   Homeobox protein MSX-1 (Hox-7)
          Length = 297

 Score = 60.8 bits (146), Expect = 1e-09
 Identities = 45/120 (37%), Positives = 63/120 (52%), Gaps = 18/120 (15%)

Query: 191 RRYRTAFTREQIARLEKEFYRENYVSRPRRCELAAALNLPETTIKVWFQNRRMKDKR--- 247
           R+ RT FT  Q+  LE++F ++ Y+S   R E +++L+L ET +K+WFQNRR K KR   
Sbjct: 167 RKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNRRAKAKRLQE 226

Query: 248 ---QRLAMTWPHPADPAFYTYMM------SHAAAAGGLPY----PFPSHLPLPYYSPVGL 294
              ++L M       PA +          + AAAAG   Y    PF     LP  +PVGL
Sbjct: 227 AELEKLKMAAKPMLPPAAFGLSFPLGGPAAVAAAAGASLYGASGPF-QRAALP-VAPVGL 284



>gi|14917010|sp|Q05925|HME1_HUMAN   Homeobox protein engrailed-1 (Hu-En-1)
          Length = 392

 Score = 60.8 bits (146), Expect = 1e-09
 Identities = 29/57 (50%), Positives = 39/57 (68%)

Query: 191 RRYRTAFTREQIARLEKEFYRENYVSRPRRCELAAALNLPETTIKVWFQNRRMKDKR 247
           +R RTAFT EQ+ RL+ EF    Y++  RR  LA  L+L E+ IK+WFQN+R K K+
Sbjct: 304 KRPRTAFTAEQLQRLKAEFQANRYITEQRRQTLAQELSLNESQIKIWFQNKRAKIKK 360



>gi|3913487|sp|O60479|DLX3_HUMAN   Homeobox protein DLX-3
          Length = 287

 Score = 60.5 bits (145), Expect = 2e-09
 Identities = 26/59 (44%), Positives = 41/59 (69%)

Query: 189 QMRRYRTAFTREQIARLEKEFYRENYVSRPRRCELAAALNLPETTIKVWFQNRRMKDKR 247
           ++R+ RT ++  Q+A L++ F +  Y++ P R ELAA L L +T +K+WFQNRR K K+
Sbjct: 128 KVRKPRTIYSSYQLAALQRRFQKAQYLALPERAELAAQLGLTQTQVKIWFQNRRSKFKK 186



>gi|20141507|sp|P17482|HXB9_HUMAN   Homeobox protein Hox-B9 (Hox-2E) (Hox-2.5)
          Length = 250

 Score = 60.5 bits (145), Expect = 2e-09
 Identities = 29/57 (50%), Positives = 38/57 (66%)

Query: 191 RRYRTAFTREQIARLEKEFYRENYVSRPRRCELAAALNLPETTIKVWFQNRRMKDKR 247
           R+ R  +T+ Q   LEKEF    Y++R RR E+A  LNL E  +K+WFQNRRMK K+
Sbjct: 186 RKKRCPYTKYQTLELEKEFLFNMYLTRDRRHEVARLLNLSERQVKIWFQNRRMKMKK 242



>gi|20141506|sp|P17481|HXB8_HUMAN   Homeobox protein Hox-B8 (Hox-2D) (Hox-2.4)
          Length = 243

 Score = 60.5 bits (145), Expect = 2e-09
 Identities = 29/58 (50%), Positives = 39/58 (67%)

Query: 191 RRYRTAFTREQIARLEKEFYRENYVSRPRRCELAAALNLPETTIKVWFQNRRMKDKRQ 248
           RR R  ++R Q   LEKEF    Y++R RR E++ AL L E  +K+WFQNRRMK K++
Sbjct: 147 RRGRQTYSRYQTLELEKEFLFNPYLTRKRRIEVSHALGLTERQVKIWFQNRRMKWKKE 204



>gi|20141282|sp|Q99626|CDX2_HUMAN   Homeobox protein CDX-2 (Caudal-type homeobox protein 2) (CDX-3)
          Length = 313

 Score = 60.5 bits (145), Expect = 2e-09
 Identities = 26/56 (46%), Positives = 37/56 (66%)

Query: 192 RYRTAFTREQIARLEKEFYRENYVSRPRRCELAAALNLPETTIKVWFQNRRMKDKR 247
           +YR  +T  Q   LEKEF+   Y++  R+ ELAA L L E  +K+WFQNRR K+++
Sbjct: 188 KYRVVYTDHQRLELEKEFHYSRYITIRRKAELAATLGLSERQVKIWFQNRRAKERK 243



>gi|21903415|sp|P19622|HME2_HUMAN   Homeobox protein engrailed-2 (Hu-En-2)
          Length = 333

 Score = 60.5 bits (145), Expect = 2e-09
 Identities = 29/57 (50%), Positives = 39/57 (68%)

Query: 191 RRYRTAFTREQIARLEKEFYRENYVSRPRRCELAAALNLPETTIKVWFQNRRMKDKR 247
           +R RTAFT EQ+ RL+ EF    Y++  RR  LA  L+L E+ IK+WFQN+R K K+
Sbjct: 245 KRPRTAFTAEQLQRLKAEFQTNRYLTEQRRQSLAQELSLNESQIKIWFQNKRAKIKK 301



>gi|14194481|sp|Q9HBU1|BARX1_HUMAN   Homeobox protein BarH-like 1
          Length = 225

 Score = 60.5 bits (145), Expect = 2e-09
 Identities = 28/57 (49%), Positives = 38/57 (66%)

Query: 191 RRYRTAFTREQIARLEKEFYRENYVSRPRRCELAAALNLPETTIKVWFQNRRMKDKR 247
           RR RT FT  Q+  LEK F ++ Y+S P R +LA +L L +  +K W+QNRRMK K+
Sbjct: 114 RRSRTVFTELQLMGLEKRFEKQKYLSTPDRIDLAESLGLSQLQVKTWYQNRRMKWKK 170



>gi|13124737|sp|P13378|HXD8_HUMAN   Homeobox protein Hox-D8 (Hox-4E) (Hox-5.4)
          Length = 290

 Score = 59.7 bits (143), Expect = 3e-09
 Identities = 30/63 (47%), Positives = 41/63 (65%)

Query: 186 ASDQMRRYRTAFTREQIARLEKEFYRENYVSRPRRCELAAALNLPETTIKVWFQNRRMKD 245
           A+   RR R  ++R Q   LEKEF    Y++R RR E++ AL L E  +K+WFQNRRMK 
Sbjct: 193 AAPGRRRGRQTYSRFQTLELEKEFLFNPYLTRKRRIEVSHALALTERQVKIWFQNRRMKW 252

Query: 246 KRQ 248
           K++
Sbjct: 253 KKE 255



>gi|3287858|sp|O43248|HXC11_HUMAN   Homeobox protein Hox-C11
          Length = 304

 Score = 59.7 bits (143), Expect = 3e-09
 Identities = 25/65 (38%), Positives = 44/65 (67%)

Query: 183 ACSASDQMRRYRTAFTREQIARLEKEFYRENYVSRPRRCELAAALNLPETTIKVWFQNRR 242
           A   + + R+ R  +++ QI  LE+EF+   Y+++ +R +L+  LNL +  +K+WFQNRR
Sbjct: 225 AAPNAPRTRKKRCPYSKFQIRELEREFFFNVYINKEKRLQLSRMLNLTDRQVKIWFQNRR 284

Query: 243 MKDKR 247
           MK+K+
Sbjct: 285 MKEKK 289



>gi|3287764|sp|O43186|CRX_HUMAN   Cone-rod homeobox protein
          Length = 299

 Score = 59.7 bits (143), Expect = 3e-09
 Identities = 30/65 (46%), Positives = 41/65 (63%)

Query: 185 SASDQMRRYRTAFTREQIARLEKEFYRENYVSRPRRCELAAALNLPETTIKVWFQNRRMK 244
           SA  + RR RT FTR Q+  LE  F +  Y     R E+A  +NLPE+ ++VWF+NRR K
Sbjct: 34  SAPRKQRRERTTFTRSQLEELEALFAKTQYPDVYAREEVALKINLPESRVQVWFKNRRAK 93

Query: 245 DKRQR 249
            ++QR
Sbjct: 94  CRQQR 98



>gi|12644329|sp|P56178|DLX5_HUMAN   Homeobox protein DLX-5
          Length = 289

 Score = 59.7 bits (143), Expect = 3e-09
 Identities = 25/59 (42%), Positives = 42/59 (71%)

Query: 189 QMRRYRTAFTREQIARLEKEFYRENYVSRPRRCELAAALNLPETTIKVWFQNRRMKDKR 247
           ++R+ RT ++  Q+A L++ F +  Y++ P R ELAA+L L +T +K+WFQN+R K K+
Sbjct: 136 KVRKPRTIYSSFQLAALQRRFQKTQYLALPERAELAASLGLTQTQVKIWFQNKRSKIKK 194



>gi|20141538|sp|P31275|HXC12_HUMAN   Homeobox protein Hox-C12 (Hox-3F)
          Length = 282

 Score = 59.7 bits (143), Expect = 3e-09
 Identities = 27/61 (44%), Positives = 41/61 (67%)

Query: 187 SDQMRRYRTAFTREQIARLEKEFYRENYVSRPRRCELAAALNLPETTIKVWFQNRRMKDK 246
           + + R+ R  +++ Q+A LE EF    +++R RR EL+  LNL +  +K+WFQNRRMK K
Sbjct: 211 NSRSRKKRKPYSKLQLAELEGEFLVNEFITRQRRRELSDRLNLSDQQVKIWFQNRRMKKK 270

Query: 247 R 247
           R
Sbjct: 271 R 271



>gi|23831508|sp|O43711|TLX3_HUMAN   T-cell leukemia homeobox protein 3 (Homeobox protein Hox-11L2)
          Length = 291

 Score = 59.7 bits (143), Expect = 3e-09
 Identities = 26/58 (44%), Positives = 39/58 (67%)

Query: 191 RRYRTAFTREQIARLEKEFYRENYVSRPRRCELAAALNLPETTIKVWFQNRRMKDKRQ 248
           ++ RT+F+R QI  LEK F+R+ Y++   R  LA +L + +  +K WFQNRR K +RQ
Sbjct: 167 KKPRTSFSRVQICELEKRFHRQKYLASAERAALAKSLKMTDAQVKTWFQNRRTKWRRQ 224



>gi|123289|sp|P28358|HXD10_HUMAN   Homeobox protein Hox-D10 (Hox-4D) (Hox-4E)
          Length = 340

 Score = 59.3 bits (142), Expect = 3e-09
 Identities = 26/57 (45%), Positives = 39/57 (68%)

Query: 191 RRYRTAFTREQIARLEKEFYRENYVSRPRRCELAAALNLPETTIKVWFQNRRMKDKR 247
           R+ R  +T+ Q   LEKEF    Y++R RR E++ ++NL +  +K+WFQNRRMK K+
Sbjct: 267 RKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISKSVNLTDRQVKIWFQNRRMKLKK 323



>gi|20141612|sp|Q9NYD6|HXC10_HUMAN   Homeobox protein Hox-C10
          Length = 342

 Score = 59.3 bits (142), Expect = 3e-09
 Identities = 26/57 (45%), Positives = 38/57 (66%)

Query: 191 RRYRTAFTREQIARLEKEFYRENYVSRPRRCELAAALNLPETTIKVWFQNRRMKDKR 247
           R+ R  +T+ Q   LEKEF    Y++R RR E++  +NL +  +K+WFQNRRMK K+
Sbjct: 269 RKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISKTINLTDRQVKIWFQNRRMKLKK 325



>gi|3914276|sp|O43316|PAX4_HUMAN   Paired box protein Pax-4
          Length = 350

 Score = 59.3 bits (142), Expect = 3e-09
 Identities = 35/90 (38%), Positives = 44/90 (48%), Gaps = 15/90 (16%)

Query: 159 SPNGGSETPKXXXXXXXXXXXXTLACSASDQMRRYRTAFTREQIARLEKEFYRENYVSRP 218
           +P+ GSETP+                       R RT F+  Q   LEKEF R  Y    
Sbjct: 154 TPHSGSETPRGTHPGTG---------------HRNRTIFSPSQAEALEKEFQRGQYPDSV 198

Query: 219 RRCELAAALNLPETTIKVWFQNRRMKDKRQ 248
            R +LA A +LPE T++VWF NRR K +RQ
Sbjct: 199 ARGKLATATSLPEDTVRVWFSNRRAKWRRQ 228



>gi|20532396|sp|O43763|TLX2_HUMAN   T-cell leukemia homeobox protein 2 (Homeobox protein Hox-11L1)
           (Neural crest homeobox protein)
          Length = 284

 Score = 58.5 bits (140), Expect = 6e-09
 Identities = 25/58 (43%), Positives = 38/58 (65%)

Query: 191 RRYRTAFTREQIARLEKEFYRENYVSRPRRCELAAALNLPETTIKVWFQNRRMKDKRQ 248
           ++ RT+F+R Q+  LE+ F R+ Y++   R  LA AL + +  +K WFQNRR K +RQ
Sbjct: 158 KKPRTSFSRSQVLELERRFLRQKYLASAERAALAKALRMTDAQVKTWFQNRRTKWRRQ 215



>gi|13124745|sp|P31273|HXC8_HUMAN   Homeobox protein Hox-C8 (Hox-3A)
          Length = 242

 Score = 58.2 bits (139), Expect = 7e-09
 Identities = 28/58 (48%), Positives = 38/58 (65%)

Query: 191 RRYRTAFTREQIARLEKEFYRENYVSRPRRCELAAALNLPETTIKVWFQNRRMKDKRQ 248
           R  R  ++R Q   LEKEF    Y++R RR E++ AL L E  +K+WFQNRRMK K++
Sbjct: 150 RSGRQTYSRYQTLELEKEFLFNPYLTRKRRIEVSHALGLTERQVKIWFQNRRMKWKKE 207



>gi|17380297|sp|Q9Y2V3|RX_HUMAN   Retinal homeobox protein Rx (Retina and anterior neural fold
           homeobox protein)
          Length = 346

 Score = 58.2 bits (139), Expect = 7e-09
 Identities = 29/58 (50%), Positives = 37/58 (63%)

Query: 191 RRYRTAFTREQIARLEKEFYRENYVSRPRRCELAAALNLPETTIKVWFQNRRMKDKRQ 248
           RR RT FT  Q+  LE+ F + +Y     R ELA  +NLPE  ++VWFQNRR K +RQ
Sbjct: 137 RRNRTTFTTYQLHELERAFEKSHYPDVYSREELAGKVNLPEVRVQVWFQNRRAKWRRQ 194



>gi|3023467|sp|O14627|CDX4_HUMAN   Homeobox protein CDX-4 (Caudal-type homeobox protein 4)
          Length = 284

 Score = 57.8 bits (138), Expect = 1e-08
 Identities = 25/56 (44%), Positives = 36/56 (64%)

Query: 192 RYRTAFTREQIARLEKEFYRENYVSRPRRCELAAALNLPETTIKVWFQNRRMKDKR 247
           +YR  +T  Q   LEKEF+   Y++  R+ ELA  L L E  +K+WFQNRR K+++
Sbjct: 175 KYRVVYTDHQRLELEKEFHCNRYITIQRKSELAVNLGLSERQVKIWFQNRRAKERK 230



>gi|13124743|sp|P31260|HXA10_HUMAN   Homeobox protein Hox-A10 (Hox-1H) (Hox-1.8) (PL)
          Length = 393

 Score = 57.4 bits (137), Expect = 1e-08
 Identities = 25/57 (43%), Positives = 39/57 (68%)

Query: 191 RRYRTAFTREQIARLEKEFYRENYVSRPRRCELAAALNLPETTIKVWFQNRRMKDKR 247
           R+ R  +T+ Q   LEKEF    Y++R RR E++ +++L +  +K+WFQNRRMK K+
Sbjct: 320 RKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISRSVHLTDRQVKIWFQNRRMKLKK 376



>gi|6016208|sp|O15522|NK28_HUMAN   Homeobox protein Nkx-2.8 (Homeobox protein NK-2 homolog H)
          Length = 239

 Score = 57.4 bits (137), Expect = 1e-08
 Identities = 26/65 (40%), Positives = 41/65 (63%)

Query: 185 SASDQMRRYRTAFTREQIARLEKEFYRENYVSRPRRCELAAALNLPETTIKVWFQNRRMK 244
           S +++ ++ R  F++ Q   LE+ F ++ Y+S P R +LA+ L L  T +K+WFQN R K
Sbjct: 79  SDAEKRKKRRVLFSKAQTLELERRFRQQRYLSAPEREQLASLLRLTPTQVKIWFQNHRYK 138

Query: 245 DKRQR 249
            KR R
Sbjct: 139 LKRAR 143



>gi|1174819|sp|P43699|TITF1_HUMAN   Thyroid transcription factor 1 (Thyroid nuclear factor 1) (TTF-1)
           (Homeobox protein Nkx-2.1) (Homeobox protein NK-2
           homolog A)
          Length = 371

 Score = 57.0 bits (136), Expect = 2e-08
 Identities = 25/58 (43%), Positives = 38/58 (65%)

Query: 191 RRYRTAFTREQIARLEKEFYRENYVSRPRRCELAAALNLPETTIKVWFQNRRMKDKRQ 248
           R+ R  F++ Q+  LE+ F ++ Y+S P R  LA+ ++L  T +K+WFQN R K KRQ
Sbjct: 162 RKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQ 219



>gi|48428084|sp|Q8N693|ESX1L_HUMAN   Extraembryonic, spermatogenesis, homeobox 1-like protein
          Length = 406

 Score = 56.6 bits (135), Expect = 2e-08
 Identities = 46/118 (38%), Positives = 55/118 (46%), Gaps = 14/118 (11%)

Query: 188 DQMRRYRTAFTREQIARLEKEFYRENYVSRPRRCELAAALNLPETTIKVWFQNRRMKDKR 247
           ++ RR RTAFT+ Q+  LE  F    Y     R  LAA LNL E  ++VWFQNRR K KR
Sbjct: 137 ERKRRRRTAFTQFQLQELENFFDESQYPDVVARERLAARLNLTEDRVQVWFQNRRAKWKR 196

Query: 248 -QRLAM-------TWPHPAD----PAFYTYMMSHAAAAGGL--PYPFPSHLPLPYYSP 291
            QR+ M          HP D     A+Y       A    L    P P  LP+P   P
Sbjct: 197 NQRVLMLRNTATADLAHPLDMFLGGAYYAAPALDPALCVHLVPQLPRPPVLPVPPMPP 254



>gi|12644475|sp|Q99811|PRRX2_HUMAN   Paired mesoderm homeobox protein 2 (PRX-2) (Paired related homeobox
           protein 2)
          Length = 253

 Score = 55.8 bits (133), Expect = 4e-08
 Identities = 30/70 (42%), Positives = 38/70 (54%)

Query: 183 ACSASDQMRRYRTAFTREQIARLEKEFYRENYVSRPRRCELAAALNLPETTIKVWFQNRR 242
           A     + RR RT F   Q+  LE+ F R +Y     R ELA  +NL E  ++VWFQNRR
Sbjct: 97  AAKRKKKQRRNRTTFNSSQLQALERVFERTHYPDAFVREELARRVNLSEARVQVWFQNRR 156

Query: 243 MKDKRQRLAM 252
            K +R   AM
Sbjct: 157 AKFRRNERAM 166



>gi|6093787|sp|O75360|PROP1_HUMAN   Homeobox protein prophet of Pit-1 (PROP-1) (Pituitary specific
           homeodomain factor)
          Length = 226

 Score = 55.8 bits (133), Expect = 4e-08
 Identities = 36/102 (35%), Positives = 51/102 (50%), Gaps = 4/102 (3%)

Query: 191 RRYRTAFTREQIARLEKEFYRENYVSRPRRCELAAALNLPETTIKVWFQNRRMKDKRQRL 250
           RR+RT F+  Q+ +LE  F R  Y     R  LA    L E  I+VWFQNRR K ++Q  
Sbjct: 70  RRHRTTFSPVQLEQLESAFGRNQYPDIWARESLARDTGLSEARIQVWFQNRRAKQRKQER 129

Query: 251 AMTWP--HPADPAFYTYMMSHAAA--AGGLPYPFPSHLPLPY 288
           ++  P  H +  AF +++    A   +   P P  +  P PY
Sbjct: 130 SLLQPLAHLSPAAFSSFLPESTACPYSYAAPPPPVTCFPHPY 171



>gi|38605720|sp|P56177|DLX1_HUMAN   Homeobox protein DLX-1
          Length = 255

 Score = 55.8 bits (133), Expect = 4e-08
 Identities = 24/59 (40%), Positives = 39/59 (66%)

Query: 189 QMRRYRTAFTREQIARLEKEFYRENYVSRPRRCELAAALNLPETTIKVWFQNRRMKDKR 247
           ++R+ RT +   Q+  L + F +  Y++ P R ELAA+L L +T +K+WFQN+R K K+
Sbjct: 127 KIRKPRTIYCSLQLQALNRRFQQTQYLALPERAELAASLGLTQTQVKIWFQNKRSKFKK 185



>gi|6174916|sp|P54821|PRRX1_HUMAN   Paired mesoderm homeobox protein 1 (PRX-1) (Paired related homeobox
           protein 1) (Homeobox protein PHOX1)
          Length = 245

 Score = 55.5 bits (132), Expect = 5e-08
 Identities = 36/105 (34%), Positives = 49/105 (46%), Gaps = 8/105 (7%)

Query: 150 GSGSEALVGSPN--GGSETPKXXXXXXXXXXXXTLACSASDQMRRYRTAFTREQIARLEK 207
           G    +L+ SP    GS+TP+                    + RR RT F   Q+  LE+
Sbjct: 58  GEAGRSLLESPGLTSGSDTPQQDNDQLNSEE------KKKRKQRRNRTTFNSSQLQALER 111

Query: 208 EFYRENYVSRPRRCELAAALNLPETTIKVWFQNRRMKDKRQRLAM 252
            F R +Y     R +LA  +NL E  ++VWFQNRR K +R   AM
Sbjct: 112 VFERTHYPDAFVREDLARRVNLTEARVQVWFQNRRAKFRRNERAM 156



>gi|20141539|sp|P31276|HXC13_HUMAN   Homeobox protein Hox-C13 (Hox-3G)
          Length = 330

 Score = 55.5 bits (132), Expect = 5e-08
 Identities = 23/66 (34%), Positives = 40/66 (60%)

Query: 191 RRYRTAFTREQIARLEKEFYRENYVSRPRRCELAAALNLPETTIKVWFQNRRMKDKRQRL 250
           R+ R  +T+ Q+  LEKE+    ++++ +R  ++A  NL E  + +WFQNRR+K+K+   
Sbjct: 261 RKKRVPYTKVQLKELEKEYAASKFITKEKRRRISATTNLSERQVTIWFQNRRVKEKKVVS 320

Query: 251 AMTWPH 256
               PH
Sbjct: 321 KSKAPH 326



>gi|6093723|sp|O75364|PITX3_HUMAN   Pituitary homeobox 3 (Homeobox protein PITX3)
          Length = 302

 Score = 55.5 bits (132), Expect = 5e-08
 Identities = 58/178 (32%), Positives = 71/178 (39%), Gaps = 21/178 (11%)

Query: 185 SASDQMRRYRTAFTREQIARLEKEFYRENYVSRPRRCELAAALNLPETTIKVWFQNRRMK 244
           S   + RR RT FT +Q+  LE  F R  Y     R E+A   NL E  ++VWF+NRR K
Sbjct: 57  SLKKKQRRQRTHFTSQQLQELEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNRRAK 116

Query: 245 -DKRQRLAMTWPHPADPAFYTYMMSHAAAAGGLPYPFPSHLPLPYYS---PVGLGXXXXX 300
             KR+R                  S AA  GGL  P+    P   Y    P  L      
Sbjct: 117 WRKRERSQQA---------ELCKGSFAAPLGGLVPPYEEVYPGYSYGNWPPKALAPPLAA 167

Query: 301 XXXXXPF-SGSLRPLDTFRVLSQP--YPRPELLCAFRHPPLYPGPA--HGLGASAGGP 353
                 F S ++ PL +  V S P       +  A   P   PGP    GLG   GGP
Sbjct: 168 KTFPFAFNSVNVGPLASQPVFSPPSSIAASMVPSAAAAPGTVPGPGALQGLG---GGP 222



>gi|6016205|sp|O95096|NKX22_HUMAN   Homeobox protein Nkx-2.2 (Homeobox protein NK-2 homolog B)
          Length = 273

 Score = 55.1 bits (131), Expect = 6e-08
 Identities = 25/59 (42%), Positives = 36/59 (61%)

Query: 191 RRYRTAFTREQIARLEKEFYRENYVSRPRRCELAAALNLPETTIKVWFQNRRMKDKRQR 249
           R+ R  F++ Q   LE+ F ++ Y+S P R  LA+ + L  T +K+WFQN R K KR R
Sbjct: 129 RKRRVLFSKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKMKRAR 187



>gi|6016211|sp|P78426|NK61_HUMAN   Homeobox protein Nkx-6.1
          Length = 367

 Score = 55.1 bits (131), Expect = 6e-08
 Identities = 60/240 (25%), Positives = 90/240 (37%), Gaps = 44/240 (18%)

Query: 33  SPLPEPPEKM---VPRGC---LSPRAVPPATXXXXXXXXXXXXXQPSSSDTESDFYEEIE 86
           S L  PP+++    P G    LS  ++P A+               SSS   +       
Sbjct: 81  SSLGSPPQQLSAATPHGINNILSRPSMPVASGAALPSASPSGSSSSSSSSASAS-----S 135

Query: 87  VSCTPDCATGNAEYQHSKVPLLH--PKEKELQGAGAPPFSEAYSPTSMAFVCLCLY---- 140
            S     A   A    S   LL   P+   L     PP    +SP++ A   +  Y    
Sbjct: 136 ASAAAAAAAAAAAAASSPAGLLAGLPRFSSLSPPPPPP-GLYFSPSAAAVAAVGRYPKPL 194

Query: 141 ------TPVLWTRCAGSG---SEALVGSPNGGSETPKXXXXXXXXXXXXTLACSASDQMR 191
                 TP+ W     S       L  +P+ GS                 +      + +
Sbjct: 195 AELPGRTPIFWPGVMQSPPWRDARLACTPHQGS-----------------ILLDKDGKRK 237

Query: 192 RYRTAFTREQIARLEKEFYRENYVSRPRRCELAAALNLPETTIKVWFQNRRMKDKRQRLA 251
             R  F+ +QI  LEK F +  Y++ P R  LA +L + E+ +KVWFQNRR K +++  A
Sbjct: 238 HTRPTFSGQQIFALEKTFEQTKYLAGPERARLAYSLGMTESQVKVWFQNRRTKWRKKHAA 297



>gi|2851475|sp|P35453|HXD13_HUMAN   Homeobox protein Hox-D13 (Hox-4I)
          Length = 335

 Score = 54.7 bits (130), Expect = 8e-08
 Identities = 22/57 (38%), Positives = 38/57 (66%)

Query: 191 RRYRTAFTREQIARLEKEFYRENYVSRPRRCELAAALNLPETTIKVWFQNRRMKDKR 247
           R+ R  +T+ Q+  LE E+    ++++ +R  ++AA NL E  + +WFQNRR+KDK+
Sbjct: 269 RKKRVPYTKLQLKELENEYAINKFINKDKRRRISAATNLSERQVTIWFQNRRVKDKK 325



>gi|3915680|sp|Q92988|DLX4_HUMAN   Homeobox protein DLX-4 (DLX-7) (DLX-8)
          Length = 347

 Score = 54.7 bits (130), Expect = 8e-08
 Identities = 23/59 (38%), Positives = 38/59 (64%)

Query: 189 QMRRYRTAFTREQIARLEKEFYRENYVSRPRRCELAAALNLPETTIKVWFQNRRMKDKR 247
           ++R+ RT ++  Q+  L + F    Y++ P R +LAA L L +T +K+WFQN+R K K+
Sbjct: 224 KLRKPRTIYSSLQLQHLNQRFQHTQYLALPERAQLAAQLGLTQTQVKIWFQNKRSKYKK 282



>gi|417425|sp|P32242|OTX1_HUMAN   Homeobox protein OTX1
          Length = 354

 Score = 54.3 bits (129), Expect = 1e-07
 Identities = 27/61 (44%), Positives = 39/61 (63%)

Query: 189 QMRRYRTAFTREQIARLEKEFYRENYVSRPRRCELAAALNLPETTIKVWFQNRRMKDKRQ 248
           + RR RT FTR Q+  LE  F +  Y     R E+A  +NLPE+ ++VWF+NRR K ++Q
Sbjct: 37  KQRRERTTFTRSQLDVLEALFAKTRYPDIFMREEVALKINLPESRVQVWFKNRRAKCRQQ 96

Query: 249 R 249
           +
Sbjct: 97  Q 97



>gi|6174907|sp|Q99697|PITX2_HUMAN   Pituitary homeobox 2 (RIEG bicoid-related homeobox transcription
           factor) (Solurshin) (ALL1 responsive protein ARP1)
          Length = 317

 Score = 53.9 bits (128), Expect = 1e-07
 Identities = 29/66 (43%), Positives = 37/66 (56%), Gaps = 1/66 (1%)

Query: 185 SASDQMRRYRTAFTREQIARLEKEFYRENYVSRPRRCELAAALNLPETTIKVWFQNRRMK 244
           S   + RR RT FT +Q+  LE  F R  Y     R E+A   NL E  ++VWF+NRR K
Sbjct: 80  SKKKRQRRQRTHFTSQQLQELEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNRRAK 139

Query: 245 -DKRQR 249
             KR+R
Sbjct: 140 WRKRER 145



>gi|417427|sp|P32243|OTX2_HUMAN   Homeobox protein OTX2
          Length = 289

 Score = 53.9 bits (128), Expect = 1e-07
 Identities = 27/61 (44%), Positives = 39/61 (63%)

Query: 189 QMRRYRTAFTREQIARLEKEFYRENYVSRPRRCELAAALNLPETTIKVWFQNRRMKDKRQ 248
           + RR RT FTR Q+  LE  F +  Y     R E+A  +NLPE+ ++VWF+NRR K ++Q
Sbjct: 37  KQRRERTTFTRAQLDVLEALFAKTRYPDIFMREEVALKINLPESRVQVWFKNRRAKCRQQ 96

Query: 249 R 249
           +
Sbjct: 97  Q 97



>gi|2833256|sp|Q14774|HLX1_HUMAN   Homeobox protein HLX1 (Homeobox protein HB24)
          Length = 488

 Score = 53.9 bits (128), Expect = 1e-07
 Identities = 27/58 (46%), Positives = 36/58 (62%)

Query: 194 RTAFTREQIARLEKEFYRENYVSRPRRCELAAALNLPETTIKVWFQNRRMKDKRQRLA 251
           R  F+  Q   LEK F  + YV++P R +LAA L L +  +KVWFQNRRMK +  + A
Sbjct: 280 RAVFSNLQRKGLEKRFEIQKYVTKPDRKQLAAMLGLTDAQVKVWFQNRRMKWRHSKEA 337



>gi|2828197|sp|P31271|HXA13_HUMAN   Homeobox protein Hox-A13 (Hox-1J)
          Length = 388

 Score = 53.5 bits (127), Expect = 2e-07
 Identities = 20/57 (35%), Positives = 38/57 (66%)

Query: 191 RRYRTAFTREQIARLEKEFYRENYVSRPRRCELAAALNLPETTIKVWFQNRRMKDKR 247
           R+ R  +T+ Q+  LE+E+    ++++ +R  ++A  NL E  + +WFQNRR+K+K+
Sbjct: 323 RKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 379



>gi|1730095|sp|P52954|LBX1_HUMAN   Transcription factor LBX1
          Length = 280

 Score = 53.5 bits (127), Expect = 2e-07
 Identities = 27/58 (46%), Positives = 34/58 (58%)

Query: 191 RRYRTAFTREQIARLEKEFYRENYVSRPRRCELAAALNLPETTIKVWFQNRRMKDKRQ 248
           R+ RTAFT  QI  LEK F  + Y+S   R ++A  L L    +  WFQNRR K KR+
Sbjct: 125 RKSRTAFTNHQIYELEKRFLYQKYLSPADRDQIAQQLGLTNAQVITWFQNRRAKLKRE 182



>gi|8247951|sp|P23759|PAX7_HUMAN   Paired box protein Pax-7 (HUP1)
          Length = 520

 Score = 53.1 bits (126), Expect = 2e-07
 Identities = 34/97 (35%), Positives = 47/97 (48%), Gaps = 6/97 (6%)

Query: 189 QMRRYRTAFTREQIARLEKEFYRENYVSRPRRCELAAALNLPETTIKVWFQNRRMKDKRQ 248
           + RR RT FT EQ+  LEK F R +Y     R ELA    L E  ++VWF NRR + ++Q
Sbjct: 216 KQRRSRTTFTAEQLEELEKAFERTHYPDIYTREELAQRTKLTEARVQVWFSNRRARWRKQ 275

Query: 249 RLAMTWPHPADPAFYTYMMSHAAAAGGLPYPFPSHLP 285
             A         A + +++       G+P   P  LP
Sbjct: 276 AGA------NQLAAFNHLLPGGFPPTGMPTLPPYQLP 306



>gi|8134644|sp|Q99453|PHX2B_HUMAN   Paired mesoderm homeobox protein 2B (Paired-like homeobox 2B)
           (PHOX2B homeodomain protein) (Neuroblastoma Phox)
           (NBPhox)
          Length = 314

 Score = 53.1 bits (126), Expect = 2e-07
 Identities = 27/63 (42%), Positives = 37/63 (58%)

Query: 189 QMRRYRTAFTREQIARLEKEFYRENYVSRPRRCELAAALNLPETTIKVWFQNRRMKDKRQ 248
           + RR RT FT  Q+  LE+ F   +Y     R ELA  ++L E  ++VWFQNRR K ++Q
Sbjct: 97  KQRRIRTTFTSAQLKELERVFAETHYPDIYTREELALKIDLTEARVQVWFQNRRAKFRKQ 156

Query: 249 RLA 251
             A
Sbjct: 157 ERA 159



>gi|8134640|sp|O14813|PHX2A_HUMAN   Paired mesoderm homeobox protein 2A (Paired-like homeobox 2A)
           (Aristaless homeobox protein homolog) (ARIX1 homeodomain
           protein)
          Length = 284

 Score = 53.1 bits (126), Expect = 2e-07
 Identities = 27/63 (42%), Positives = 37/63 (58%)

Query: 189 QMRRYRTAFTREQIARLEKEFYRENYVSRPRRCELAAALNLPETTIKVWFQNRRMKDKRQ 248
           + RR RT FT  Q+  LE+ F   +Y     R ELA  ++L E  ++VWFQNRR K ++Q
Sbjct: 89  KQRRIRTTFTSAQLKELERVFAETHYPDIYTREELALKIDLTEARVQVWFQNRRAKFRKQ 148

Query: 249 RLA 251
             A
Sbjct: 149 ERA 151



>gi|1172022|sp|P23760|PAX3_HUMAN   Paired box protein Pax-3 (HUP2)
          Length = 479

 Score = 52.8 bits (125), Expect = 3e-07
 Identities = 33/94 (35%), Positives = 45/94 (47%), Gaps = 11/94 (11%)

Query: 189 QMRRYRTAFTREQIARLEKEFYRENYVSRPRRCELAAALNLPETTIKVWFQNRRMKDKRQ 248
           + RR RT FT EQ+  LE+ F R +Y     R ELA    L E  ++VWF NRR + ++Q
Sbjct: 218 KQRRSRTTFTAEQLEELERAFERTHYPDIYTREELAQRAKLTEARVQVWFSNRRARWRKQ 277

Query: 249 RLAMT-----------WPHPADPAFYTYMMSHAA 271
             A             +P  A P   TY +S  +
Sbjct: 278 AGANQLMAFNHLIPGGFPPTAMPTLPTYQLSETS 311



>gi|3024482|sp|P78337|PITX1_HUMAN   Pituitary homeobox 1 (Hindlimb expressed homeobox protein backfoot)
          Length = 314

 Score = 52.8 bits (125), Expect = 3e-07
 Identities = 28/62 (45%), Positives = 36/62 (58%), Gaps = 1/62 (1%)

Query: 189 QMRRYRTAFTREQIARLEKEFYRENYVSRPRRCELAAALNLPETTIKVWFQNRRMK-DKR 247
           + RR RT FT +Q+  LE  F R  Y     R E+A   NL E  ++VWF+NRR K  KR
Sbjct: 88  KQRRQRTHFTSQQLQELEATFQRNRYPDMSMREEIAVWTNLTEPRVRVWFKNRRAKWRKR 147

Query: 248 QR 249
           +R
Sbjct: 148 ER 149



>gi|25009572|sp|Q9NZR4|VSX1_HUMAN   Visual system homeobox 1 (Transcription factor VSX1) (Retinal inner
           nuclear layer homeobox protein) (Homeodomain protein
           RINX)
          Length = 365

 Score = 52.4 bits (124), Expect = 4e-07
 Identities = 27/58 (46%), Positives = 34/58 (58%)

Query: 191 RRYRTAFTREQIARLEKEFYRENYVSRPRRCELAAALNLPETTIKVWFQNRRMKDKRQ 248
           RR+RT FT  Q+  LEK F   +Y     R  LA    LPE  I+VWFQNRR K +++
Sbjct: 165 RRHRTVFTAHQLEELEKAFSEAHYPDVYAREMLAVKTELPEDRIQVWFQNRRAKWRKR 222



>gi|50403792|sp|Q92826|HXB13_HUMAN   Homeobox protein Hox-B13
          Length = 284

 Score = 52.0 bits (123), Expect = 5e-07
 Identities = 20/57 (35%), Positives = 40/57 (70%)

Query: 191 RRYRTAFTREQIARLEKEFYRENYVSRPRRCELAAALNLPETTIKVWFQNRRMKDKR 247
           R+ R  +++ Q+  LE+E+    ++++ +R +++AA +L E  I +WFQNRR+K+K+
Sbjct: 217 RKKRIPYSKGQLRELEREYAANKFITKDKRRKISAATSLSERQITIWFQNRRVKEKK 273



>gi|6831676|sp|O15266|SHOX_HUMAN   Short stature homeobox protein (Short stature homeobox containing
           protein) (Pseudoautosomal homeobox containing osteogenic
           protein)
          Length = 292

 Score = 52.0 bits (123), Expect = 5e-07
 Identities = 28/64 (43%), Positives = 37/64 (57%)

Query: 189 QMRRYRTAFTREQIARLEKEFYRENYVSRPRRCELAAALNLPETTIKVWFQNRRMKDKRQ 248
           + RR RT FT EQ+  LE+ F   +Y     R EL+  L L E  ++VWFQNRR K ++Q
Sbjct: 116 KQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQVWFQNRRAKCRKQ 175

Query: 249 RLAM 252
              M
Sbjct: 176 ENQM 179



>gi|3023579|sp|Q15699|CRT1_HUMAN   Cartilage homeoprotein 1 (CART-1)
          Length = 326

 Score = 52.0 bits (123), Expect = 5e-07
 Identities = 29/65 (44%), Positives = 39/65 (60%), Gaps = 1/65 (1%)

Query: 186 ASDQMRRYRTAFTREQIARLEKEFYRENYVSRPRRCELAAALNLPETTIKVWFQNRRMK- 244
           +S + RR+RT FT  Q+  LEK F + +Y     R +LA    L E  ++VWFQNRR K 
Sbjct: 128 SSSKKRRHRTTFTSLQLEELEKVFQKTHYPDVYVREQLALRTELTEARVQVWFQNRRAKW 187

Query: 245 DKRQR 249
            KR+R
Sbjct: 188 RKRER 192



>gi|12230168|sp|Q9UBX0|HESX1_HUMAN   Homeobox expressed in ES cells 1 (Homeobox protein ANF) (hAnf)
          Length = 185

 Score = 51.6 bits (122), Expect = 7e-07
 Identities = 30/57 (52%), Positives = 34/57 (59%)

Query: 191 RRYRTAFTREQIARLEKEFYRENYVSRPRRCELAAALNLPETTIKVWFQNRRMKDKR 247
           RR RTAFT+ QI  LE  F    Y     R +LA  LNL E  I++WFQNRR K KR
Sbjct: 109 RRPRTAFTQNQIEVLENVFRVNCYPGIDIREDLAQKLNLEEDRIQIWFQNRRAKLKR 165



>gi|17374365|sp|P58304|CHX10_HUMAN   Homeobox protein CHX10 (Ceh-10 homeodomain containing homolog)
          Length = 361

 Score = 51.6 bits (122), Expect = 7e-07
 Identities = 33/81 (40%), Positives = 42/81 (51%), Gaps = 1/81 (1%)

Query: 191 RRYRTAFTREQIARLEKEFYRENYVSRPRRCELAAALNLPETTIKVWFQNRRMK-DKRQR 249
           RR+RT FT  Q+  LEK F   +Y     R  LA    LPE  I+VWFQNRR K  KR++
Sbjct: 149 RRHRTIFTSYQLEELEKAFNEAHYPDVYAREMLAMKTELPEDRIQVWFQNRRAKWRKREK 208

Query: 250 LAMTWPHPADPAFYTYMMSHA 270
                   A+   Y  M+ H+
Sbjct: 209 CWGRSSVMAEYGLYGAMVRHS 229



>gi|18202099|sp|O60902|SHOX2_HUMAN   Short stature homeobox protein 2 (Paired-related homeobox protein
           SHOT) (Homeobox protein Og12X)
          Length = 331

 Score = 51.6 bits (122), Expect = 7e-07
 Identities = 27/60 (45%), Positives = 36/60 (60%)

Query: 189 QMRRYRTAFTREQIARLEKEFYRENYVSRPRRCELAAALNLPETTIKVWFQNRRMKDKRQ 248
           + RR RT FT EQ+  LE+ F   +Y     R EL+  L L E  ++VWFQNRR K ++Q
Sbjct: 139 KQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQVWFQNRRAKCRKQ 198



>gi|7531125|sp|P56915|GSC_HUMAN   Homeobox protein goosecoid
          Length = 252

 Score = 51.2 bits (121), Expect = 9e-07
 Identities = 26/59 (44%), Positives = 36/59 (61%)

Query: 191 RRYRTAFTREQIARLEKEFYRENYVSRPRRCELAAALNLPETTIKVWFQNRRMKDKRQR 249
           RR+RT FT EQ+  LE  F    Y     R +LA  ++L E  ++VWF+NRR K +RQ+
Sbjct: 156 RRHRTIFTDEQLEALENLFQETKYPDVGTREQLARKVHLREEKVEVWFKNRRAKWRRQK 214



>gi|547658|sp|Q03014|HHEX_HUMAN   Homeobox protein PRH (Hematopoietically expressed homeobox)
           (Homeobox protein HEX)
          Length = 270

 Score = 50.8 bits (120), Expect = 1e-06
 Identities = 24/51 (47%), Positives = 31/51 (60%)

Query: 197 FTREQIARLEKEFYRENYVSRPRRCELAAALNLPETTIKVWFQNRRMKDKR 247
           F+ +Q   LEK+F  + Y+S P R  LA  L L E  +K WFQNRR K +R
Sbjct: 144 FSNDQTIELEKKFETQKYLSPPERKRLAKMLQLSERQVKTWFQNRRAKWRR 194



>gi|6685480|sp|O15499|GSCL_HUMAN   Homeobox protein goosecoid-like (GSC-2)
          Length = 205

 Score = 50.4 bits (119), Expect = 2e-06
 Identities = 32/107 (29%), Positives = 47/107 (43%), Gaps = 11/107 (10%)

Query: 145 WTRCAGSGSEALVGSPNGGSETPKXXXXXXXXXXXXTLACSASDQMRRYRTAFTREQIAR 204
           W    G      +G+P GGS                 +   +  + RR+RT F+ EQ+  
Sbjct: 92  WPLRLGPAVPLSLGAPAGGS-----------GALPGAVGPGSQRRTRRHRTIFSEEQLQA 140

Query: 205 LEKEFYRENYVSRPRRCELAAALNLPETTIKVWFQNRRMKDKRQRLA 251
           LE  F +  Y     R  LA  + L E  ++VWF+NRR K + Q+ A
Sbjct: 141 LEALFVQNQYPDVSTRERLAGRIRLREERVEVWFKNRRAKWRHQKRA 187



>gi|13626112|sp|Q9H161|ALX4_HUMAN   Homeobox protein aristaless-like 4
          Length = 411

 Score = 50.4 bits (119), Expect = 2e-06
 Identities = 29/66 (43%), Positives = 38/66 (57%), Gaps = 1/66 (1%)

Query: 185 SASDQMRRYRTAFTREQIARLEKEFYRENYVSRPRRCELAAALNLPETTIKVWFQNRRMK 244
           S   + RR RT FT  Q+  LEK F + +Y     R +LA   +L E  ++VWFQNRR K
Sbjct: 209 SNKGKKRRNRTTFTSYQLEELEKVFQKTHYPDVYAREQLAMRTDLTEARVQVWFQNRRAK 268

Query: 245 -DKRQR 249
             KR+R
Sbjct: 269 WRKRER 274



>gi|37537987|sp|Q9BQY4|PEP2_HUMAN   Paired-like homeobox protein PEPP-2 (Testis homeobox gene 1)
          Length = 288

 Score = 48.5 bits (114), Expect = 6e-06
 Identities = 23/57 (40%), Positives = 36/57 (63%)

Query: 196 AFTREQIARLEKEFYRENYVSRPRRCELAAALNLPETTIKVWFQNRRMKDKRQRLAM 252
           AFT  Q+  LE+ F RE + S   R  LA ++N+ E  +++WF+NRR K +R + A+
Sbjct: 140 AFTPLQLQELERIFQREQFPSEFLRRRLARSMNVTELAVQIWFENRRAKWRRHQRAL 196



>gi|13626107|sp|O95076|ALX3_HUMAN   Homeobox protein aristaless-like 3 (Proline-rich transcription
           factor ALX3)
          Length = 343

 Score = 48.1 bits (113), Expect = 8e-06
 Identities = 27/60 (45%), Positives = 36/60 (60%), Gaps = 1/60 (1%)

Query: 191 RRYRTAFTREQIARLEKEFYRENYVSRPRRCELAAALNLPETTIKVWFQNRRMK-DKRQR 249
           RR RT F+  Q+  LEK F + +Y     R +LA   +L E  ++VWFQNRR K  KR+R
Sbjct: 154 RRNRTTFSTFQLEELEKVFQKTHYPDVYAREQLALRTDLTEARVQVWFQNRRAKWRKRER 213



>gi|37537960|sp|Q8NHV9|PEPP1_HUMAN   Paired-like homeobox protein PEPP-1 (Ovary-, testis- and
           epididymis-expressed gene protein)
          Length = 184

 Score = 47.4 bits (111), Expect = 1e-05
 Identities = 29/81 (35%), Positives = 41/81 (50%), Gaps = 2/81 (2%)

Query: 189 QMRRYRTAFTREQIARLEKEFYRENYVSRPRRCELAAALNLPETTIKVWFQNRRMKDKR- 247
           Q R  RT FT  Q+  LE  F    Y   P R ELA  L + E  ++VWF+N+R + +R 
Sbjct: 102 QPRTRRTKFTLLQVEELESVFRHTQYPDVPTRRELAENLGVTEDKVRVWFKNKRARCRRH 161

Query: 248 -QRLAMTWPHPADPAFYTYMM 267
            + L +     ADP    Y++
Sbjct: 162 QRELMLANELRADPDDCVYIV 182



>gi|123402|sp|P09086|PO2F2_HUMAN   POU domain, class 2, transcription factor 2 (Octamer-binding
           transcription factor 2) (Oct-2) (OTF-2)
           (Lymphoid-restricted immunoglobulin octamer binding
           protein NF-A2)
          Length = 479

 Score = 43.9 bits (102), Expect = 1e-04
 Identities = 30/91 (32%), Positives = 43/91 (47%), Gaps = 4/91 (4%)

Query: 191 RRYRTAFTREQIARLEKEFYRENYVSRPRRCELAAALNLPETTIKVWFQNRRMKDKRQR- 249
           R+ RT+        LEK F      +      +A  L++ +  I+VWF NRR K+KR   
Sbjct: 298 RKKRTSIETNVRFALEKSFLANQKPTSEEILLIAEQLHMEKEVIRVWFCNRRQKEKRINP 357

Query: 250 --LAMTWPHPADPAFYT-YMMSHAAAAGGLP 277
              A   P P  PA Y+ +M++    AG LP
Sbjct: 358 CSAAPMLPSPGKPASYSPHMVTPQGGAGTLP 388



>gi|123408|sp|P28069|PIT1_HUMAN   Pituitary-specific positive transcription factor 1 (Pit-1) (Growth
           hormone factor 1) (GHF-1)
          Length = 291

 Score = 43.1 bits (100), Expect = 2e-04
 Identities = 21/67 (31%), Positives = 37/67 (55%)

Query: 186 ASDQMRRYRTAFTREQIARLEKEFYRENYVSRPRRCELAAALNLPETTIKVWFQNRRMKD 245
           A+++ R+ RT  +      LE+ F  +N  S      +A  LNL +  ++VWF NRR ++
Sbjct: 210 ANERKRKRRTTISIAAKDALERHFGEQNKPSSQEIMRMAEELNLEKEVVRVWFCNRRQRE 269

Query: 246 KRQRLAM 252
           KR + ++
Sbjct: 270 KRVKTSL 276



>gi|8134548|sp|Q9UPM6|LHX61_HUMAN   LIM/homeobox protein Lhx6.1 (Lhx6)
          Length = 363

 Score = 43.1 bits (100), Expect = 2e-04
 Identities = 24/71 (33%), Positives = 37/71 (52%), Gaps = 4/71 (5%)

Query: 191 RRYRTAFTREQIARLEKEFYRENYVSRPRRCELAAALNLPETTIKVWFQNRRMKDKRQRL 250
           +R RT+FT EQ+  ++ +F ++N        +LA    L    I+VWFQN R + K+   
Sbjct: 220 KRARTSFTAEQLQVMQAQFAQDNNPDAQTLQKLADMTGLSRRVIQVWFQNCRARHKKH-- 277

Query: 251 AMTWPHPADPA 261
             T  HP  P+
Sbjct: 278 --TPQHPVPPS 286



>gi|28380240|sp|Q9C0A1|ZFHX2_HUMAN   Zinc finger homeobox protein 2
          Length = 1427

 Score = 42.4 bits (98), Expect = 4e-04
 Identities = 24/64 (37%), Positives = 35/64 (54%), Gaps = 2/64 (3%)

Query: 191 RRYRTAFTREQIARLEKEFYRENYVSRPRRCE-LAAALNLPETTIKVWFQNRRMKDKRQR 249
           RRYRT  +  Q+ ++ K  Y        + CE L   + LP+  I+VWFQN R K+K+ +
Sbjct: 921 RRYRTQMSSLQL-KIMKACYEAYRTPTMQECEVLGEEIGLPKRVIQVWFQNARAKEKKAK 979

Query: 250 LAMT 253
           L  T
Sbjct: 980 LQGT 983



 Score = 33.9 bits (76), Expect = 0.15
 Identities = 21/58 (36%), Positives = 27/58 (46%), Gaps = 1/58 (1%)

Query: 191 RRY-RTAFTREQIARLEKEFYRENYVSRPRRCELAAALNLPETTIKVWFQNRRMKDKR 247
           RR+ RT FT  Q   L+  F    Y        LA+ L L    + VWFQN R K ++
Sbjct: 450 RRFSRTKFTEFQTQALQSFFETSAYPKDGEVERLASLLGLASRVVVVWFQNARQKARK 507



 Score = 32.7 bits (73), Expect = 0.34
 Identities = 15/63 (23%), Positives = 34/63 (53%)

Query: 191 RRYRTAFTREQIARLEKEFYRENYVSRPRRCELAAALNLPETTIKVWFQNRRMKDKRQRL 250
           +R RT    EQ+  L + + +++  +R     ++  + L +  ++VWFQN R ++++ + 
Sbjct: 713 KRLRTTILPEQLEILYRWYMQDSNPTRKMLDCISEEVGLKKRVVQVWFQNTRARERKGQF 772

Query: 251 AMT 253
             T
Sbjct: 773 RST 775



 Score = 28.5 bits (62), Expect = 6.3
 Identities = 15/37 (40%), Positives = 18/37 (48%)

Query: 513 LPLGCFHYSPTAETPATICPPENKRECRGGQLPPKVS 549
           LP G    +PT E P  + PP    E  G + PPK S
Sbjct: 836 LPPGKEATTPTPEPPLPLLPPPPPSEEEGPEEPPKAS 872



>gi|28201861|sp|Q9UKI9|PO2F3_HUMAN   POU domain, class 2, transcription factor 3 (Octamer-binding
           transcription factor 11) (Oct-11) (Transcription factor
           Skn-1) (PLA-1 protein)
          Length = 436

 Score = 41.6 bits (96), Expect = 7e-04
 Identities = 28/97 (28%), Positives = 45/97 (46%), Gaps = 2/97 (2%)

Query: 191 RRYRTAFTREQIARLEKEFYRENYVSRPRRCELAAALNLPETTIKVWFQNRRMKDKRQRL 250
           R+ RT+        LEK F      S      +A  L++ +  ++VWF NRR K+KR   
Sbjct: 282 RKKRTSIETNIRLTLEKRFQDNPKPSSEEISMIAEQLSMEKEVVRVWFCNRRQKEKRINC 341

Query: 251 AMTWPHPADPAFYTYMMSHAAAAGGLPYPFPSHLPLP 287
            +  P    P + + ++S + + G L  P P H  +P
Sbjct: 342 PVATP-IKPPVYNSRLVSPSGSLGPLSVP-PVHSTMP 376



>gi|60416412|sp|P48742|LHX1_HUMAN   LIM/homeobox protein Lhx1 (LIM homeobox protein 1) (Homeobox
           protein Lim-1)
          Length = 406

 Score = 40.8 bits (94), Expect = 0.001
 Identities = 51/195 (26%), Positives = 65/195 (33%), Gaps = 38/195 (19%)

Query: 194 RTAFTREQIARLEKEFYRENYVSRPRRCELAAALNLPETTIKVWFQNRRMKDKR------ 247
           RT    +Q+  L+  F      +R  R +LA    L    I+VWFQNRR K++R      
Sbjct: 184 RTTIKAKQLETLKAAFAATPKPTRHIREQLAQETGLNMRVIQVWFQNRRSKERRMKQLSA 243

Query: 248 -------------------QRLAMTWPHPADP-AFYTYMMSHAAAAGGLPYPFPSHLPLP 287
                               RL      P  P +FY    S     GG    FP   P  
Sbjct: 244 LGARRHAFFRSPRRMRPLVDRLEPGELIPNGPFSFYGDYQSEYYGPGGNYDFFPQGPPSS 303

Query: 288 Y-YSPVGLGXXXXXXXXXXPFSGSLRPLDTFRVLSQPYPRPELLCAFRHP--------PL 338
              +PV L           P  G   PL      S+     ++L    HP        P 
Sbjct: 304 QAQTPVDLPFVPSSGPSGTPLGGLEHPLPGHHPSSEAQRFTDILA---HPPGDSPSPEPS 360

Query: 339 YPGPAHGLGASAGGP 353
            PGP H + A   GP
Sbjct: 361 LPGPLHSMSAEVFGP 375



>gi|18202510|sp|Q15911|ATBF1_HUMAN   Alpha-fetoprotein enhancer binding protein (AT motif-binding factor)
            (AT-binding transcription factor 1)
          Length = 3703

 Score = 40.8 bits (94), Expect = 0.001
 Identities = 22/63 (34%), Positives = 35/63 (55%), Gaps = 2/63 (3%)

Query: 191  RRYRTAFTREQIARLEKEFYRENYVSRPRRCE-LAAALNLPETTIKVWFQNRRMKDKRQR 249
            +R+RT  T  Q+  L K  + +        CE L   + LP+  ++VWFQN R K+K+ +
Sbjct: 2947 KRFRTQMTNLQLKVL-KSCFNDYRTPTMLECEVLGNDIGLPKRVVQVWFQNARAKEKKSK 3005

Query: 250  LAM 252
            L+M
Sbjct: 3006 LSM 3008



 Score = 37.7 bits (86), Expect = 0.010
 Identities = 18/68 (26%), Positives = 36/68 (52%)

Query: 191  RRYRTAFTREQIARLEKEFYRENYVSRPRRCELAAALNLPETTIKVWFQNRRMKDKRQRL 250
            +R RT  T EQ+  L +++  ++  +R     +A  + L +  ++VWFQN R ++++ + 
Sbjct: 2642 KRLRTTITPEQLEILYQKYLLDSNPTRKMLDHIAHEVGLKKRVVQVWFQNTRARERKGQF 2701

Query: 251  AMTWPHPA 258
                P  A
Sbjct: 2702 RAVGPAQA 2709



 Score = 37.7 bits (86), Expect = 0.010
 Identities = 22/57 (38%), Positives = 28/57 (49%)

Query: 191  RRYRTAFTREQIARLEKEFYRENYVSRPRRCELAAALNLPETTIKVWFQNRRMKDKR 247
            R  RT FT  Q+  L+  F    Y       +L+  LNLP   I VWFQN R K ++
Sbjct: 2243 RSSRTRFTDYQLRVLQDFFDANAYPKDDEFEQLSNLLNLPTRVIVVWFQNARQKARK 2299



 Score = 36.6 bits (83), Expect = 0.023
 Identities = 20/60 (33%), Positives = 32/60 (53%)

Query: 189  QMRRYRTAFTREQIARLEKEFYRENYVSRPRRCELAAALNLPETTIKVWFQNRRMKDKRQ 248
            Q +R RT  T +Q+  L + F   N  S  +  E+A    LP+  IK WF+N   K++++
Sbjct: 2144 QNKRPRTRITDDQLRVLRQYFDINNSPSEEQIKEMADKSGLPQKVIKHWFRNTLFKERQR 2203



>gi|20138668|sp|Q969G2|LHX4_HUMAN   LIM/homeobox protein Lhx4
          Length = 367

 Score = 40.4 bits (93), Expect = 0.002
 Identities = 20/57 (35%), Positives = 32/57 (56%)

Query: 191 RRYRTAFTREQIARLEKEFYRENYVSRPRRCELAAALNLPETTIKVWFQNRRMKDKR 247
           +R RT  T +Q+  L+  +      +R  R +L++   L    ++VWFQNRR K+KR
Sbjct: 135 KRPRTTITAKQLETLKNAYKNSPKPARHVREQLSSETGLDMRVVQVWFQNRRAKEKR 191



>gi|28201884|sp|P78424|PO6F2_HUMAN   POU domain, class 6, transcription factor 2 (Retina-derived
           POU-domain factor-1) (RPF-1)
          Length = 684

 Score = 40.4 bits (93), Expect = 0.002
 Identities = 24/78 (30%), Positives = 38/78 (48%), Gaps = 2/78 (2%)

Query: 185 SASDQMRRYRTAFTREQIARLEKEFYRENYVSRPRRCELAAALNLPETTIKVWFQNRR-- 242
           S   + R+ RT+FT + +  L   F +  + S     E+A  LN     ++VWF N+R  
Sbjct: 595 SEPSKKRKRRTSFTPQALEILNAHFEKNTHPSGQEMTEIAEKLNYDREVVRVWFCNKRQA 654

Query: 243 MKDKRQRLAMTWPHPADP 260
           +K+  +RL    P  A P
Sbjct: 655 LKNTIKRLKQHEPATAVP 672



>gi|12643415|sp|Q9UBR4|LHX3_HUMAN   LIM/homeobox protein Lhx3
          Length = 397

 Score = 40.0 bits (92), Expect = 0.002
 Identities = 20/57 (35%), Positives = 32/57 (56%)

Query: 191 RRYRTAFTREQIARLEKEFYRENYVSRPRRCELAAALNLPETTIKVWFQNRRMKDKR 247
           +R RT  T +Q+  L+  +      +R  R +L++   L    ++VWFQNRR K+KR
Sbjct: 158 KRPRTTITAKQLETLKSAYNTSPKPARHVREQLSSETGLDMRVVQVWFQNRRAKEKR 214



>gi|1709437|sp|Q03052|PO3F1_HUMAN   POU domain, class 3, transcription factor 1 (Octamer-binding
           transcription factor 6) (Oct-6) (POU-domain
           transcription factor SCIP)
          Length = 448

 Score = 40.0 bits (92), Expect = 0.002
 Identities = 33/103 (32%), Positives = 43/103 (41%), Gaps = 3/103 (2%)

Query: 185 SASDQMRRYRTAFTREQIARLEKEFYRENYVSRPRRCELAAALNLPETTIKVWFQNRRMK 244
           +A  + R+ RT+        LE  F +    S      LA +L L +  ++VWF NRR K
Sbjct: 331 AAQGRKRKKRTSIEVGVKGALESHFLKCPKPSAHEITGLADSLQLEKEVVRVWFCNRRQK 390

Query: 245 DKRQRLAMTWPHPADPAFYTYMMSHAAAAGGLPYPFPSHLPLP 287
           +KR   A    HP  P    Y        GG   P PS  P P
Sbjct: 391 EKRMTPAAGAGHP--PMDDVYAPGELGPGGGGASP-PSAPPPP 430



>gi|2506535|sp|Q01851|PO4F1_HUMAN   POU domain, class 4, transcription factor 1 (Brain-specific
           homeobox/POU domain protein 3A) (Brn-3A) (Oct-T1)
           (Homeobox/POU domain protein RDC-1)
          Length = 423

 Score = 38.1 bits (87), Expect = 0.008
 Identities = 19/66 (28%), Positives = 34/66 (51%)

Query: 189 QMRRYRTAFTREQIARLEKEFYRENYVSRPRRCELAAALNLPETTIKVWFQNRRMKDKRQ 248
           + +R RT+    +   LE  F  +   S  +   +A  L+L +  ++VWF N+R K KR 
Sbjct: 358 EKKRKRTSIAAPEKRSLEAYFAVQPRPSSEKIAAIAEKLDLKKNVVRVWFCNQRQKQKRM 417

Query: 249 RLAMTW 254
           + + T+
Sbjct: 418 KFSATY 423



>gi|28202257|sp|P14859|PO2F1_HUMAN   POU domain, class 2, transcription factor 1 (Octamer-binding
           transcription factor 1) (Oct-1) (OTF-1) (NF-A1)
          Length = 743

 Score = 37.7 bits (86), Expect = 0.010
 Identities = 20/57 (35%), Positives = 28/57 (49%)

Query: 191 RRYRTAFTREQIARLEKEFYRENYVSRPRRCELAAALNLPETTIKVWFQNRRMKDKR 247
           R+ RT+        LEK F      +      +A  LN+ +  I+VWF NRR K+KR
Sbjct: 380 RKKRTSIETNIRVALEKSFLENQKPTSEEITMIADQLNMEKEVIRVWFCNRRQKEKR 436



>gi|28202258|sp|P20265|PO3F2_HUMAN   POU domain, class 3, transcription factor 2 (Nervous-system
           specific octamer-binding transcription factor N-Oct-3)
           (Brain-specific homeobox/POU domain protein 2) (Brain-2)
           (Brn-2 protein)
          Length = 443

 Score = 37.0 bits (84), Expect = 0.018
 Identities = 21/63 (33%), Positives = 31/63 (49%)

Query: 185 SASDQMRRYRTAFTREQIARLEKEFYRENYVSRPRRCELAAALNLPETTIKVWFQNRRMK 244
           +A  + R+ RT+        LE  F +    S      LA +L L +  ++VWF NRR K
Sbjct: 349 AAQGRKRKKRTSIEVSVKGALESHFLKCPKPSAQEITSLADSLQLEKEVVRVWFCNRRQK 408

Query: 245 DKR 247
           +KR
Sbjct: 409 EKR 411



>gi|18202938|sp|Q9H2C1|LHX5_HUMAN   LIM/homeobox protein Lhx5
          Length = 402

 Score = 37.0 bits (84), Expect = 0.018
 Identities = 21/65 (32%), Positives = 33/65 (50%)

Query: 185 SASDQMRRYRTAFTREQIARLEKEFYRENYVSRPRRCELAAALNLPETTIKVWFQNRRMK 244
           ++  + R  RT    +Q+  L+  F      +R  R +LA    L    I+VWFQNRR K
Sbjct: 175 NSGTKRRGPRTTIKAKQLETLKAAFAATPKPTRHIREQLAQETGLNMRVIQVWFQNRRSK 234

Query: 245 DKRQR 249
           ++R +
Sbjct: 235 ERRMK 239



>gi|20978495|sp|Q96A47|ISL2_HUMAN   Insulin gene enhancer protein ISL-2 (Islet-2)
          Length = 359

 Score = 37.0 bits (84), Expect = 0.018
 Identities = 22/71 (30%), Positives = 35/71 (49%), Gaps = 10/71 (14%)

Query: 187 SDQMRRYRTAFTREQIARLEKEFYRENYVSRPR-----RCELAAALNLPETTIKVWFQNR 241
           +++  R RT    +Q+  L     R  Y + PR     + +L     L    I+VWFQN+
Sbjct: 188 TEKTTRVRTVLNEKQLHTL-----RTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQNK 242

Query: 242 RMKDKRQRLAM 252
           R KDK++ + M
Sbjct: 243 RCKDKKKSILM 253



>gi|2506534|sp|P20264|PO33_HUMAN   POU domain, class 3, transcription factor 3 (Brain-specific
           homeobox/POU domain protein 1) (Brain-1) (Brn-1 protein)
          Length = 500

 Score = 37.0 bits (84), Expect = 0.018
 Identities = 21/63 (33%), Positives = 31/63 (49%)

Query: 185 SASDQMRRYRTAFTREQIARLEKEFYRENYVSRPRRCELAAALNLPETTIKVWFQNRRMK 244
           +A  + R+ RT+        LE  F +    S      LA +L L +  ++VWF NRR K
Sbjct: 401 AAQGRKRKKRTSIEVSVKGALESHFLKCPKPSAQEITNLADSLQLEKEVVRVWFCNRRQK 460

Query: 245 DKR 247
           +KR
Sbjct: 461 EKR 463



>gi|47606423|sp|P61371|ISL1_HUMAN   Insulin gene enhancer protein ISL-1 (Islet-1)
 gi|47606425|sp|P61373|ISL1_MESAU   Insulin gene enhancer protein ISL-1 (Islet-1)
 gi|47606424|sp|P61372|ISL1_MOUSE   Insulin gene enhancer protein ISL-1 (Islet-1)
 gi|47606422|sp|P61374|ISL1_RAT   Insulin gene enhancer protein ISL-1 (Islet-1)
          Length = 349

 Score = 36.6 bits (83), Expect = 0.023
 Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 10/70 (14%)

Query: 188 DQMRRYRTAFTREQIARLEKEFYRENYVSRPR-----RCELAAALNLPETTIKVWFQNRR 242
           ++  R RT    +Q+  L     R  Y + PR     + +L     L    I+VWFQN+R
Sbjct: 179 EKTTRVRTVLNEKQLHTL-----RTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQNKR 233

Query: 243 MKDKRQRLAM 252
            KDK++ + M
Sbjct: 234 CKDKKRSIMM 243



>gi|8247936|sp|P50458|LHX2_HUMAN   LIM/homeobox protein Lhx2 (Homeobox protein LH-2)
          Length = 406

 Score = 35.8 bits (81), Expect = 0.040
 Identities = 19/65 (29%), Positives = 32/65 (49%)

Query: 186 ASDQMRRYRTAFTREQIARLEKEFYRENYVSRPRRCELAAALNLPETTIKVWFQNRRMKD 245
           +S + +R RT+F   Q+  ++  F   +        +LA    L +  ++VWFQN R K 
Sbjct: 262 SSQKTKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQVWFQNARAKF 321

Query: 246 KRQRL 250
           +R  L
Sbjct: 322 RRNLL 326



>gi|2495300|sp|Q12837|PO42_HUMAN   POU domain, class 4, transcription factor 2 (Brain-specific
           homeobox/POU domain protein 3B) (Brn-3B)
          Length = 410

 Score = 35.4 bits (80), Expect = 0.052
 Identities = 18/61 (29%), Positives = 31/61 (50%)

Query: 189 QMRRYRTAFTREQIARLEKEFYRENYVSRPRRCELAAALNLPETTIKVWFQNRRMKDKRQ 248
           + +R RT+    +   LE  F  +   S  +   +A  L+L +  ++VWF N+R K KR 
Sbjct: 345 EKKRKRTSIAAPEKRSLEAYFAIQPRPSSEKIAAIAEKLDLKKNVVRVWFCNQRQKQKRM 404

Query: 249 R 249
           +
Sbjct: 405 K 405



>gi|2495302|sp|Q15319|PO43_HUMAN   POU domain, class 4, transcription factor 3 (Brain-specific
           homeobox/POU domain protein 3C) (Brn-3C)
          Length = 338

 Score = 35.4 bits (80), Expect = 0.052
 Identities = 18/61 (29%), Positives = 31/61 (50%)

Query: 189 QMRRYRTAFTREQIARLEKEFYRENYVSRPRRCELAAALNLPETTIKVWFQNRRMKDKRQ 248
           + +R RT+    +   LE  F  +   S  +   +A  L+L +  ++VWF N+R K KR 
Sbjct: 273 ERKRKRTSIAAPEKRSLEAYFAIQPRPSSEKIAAIAEKLDLKKNVVRVWFCNQRQKQKRM 332

Query: 249 R 249
           +
Sbjct: 333 K 333



>gi|12230598|sp|Q9NPC8|SIX2_HUMAN   Homeobox protein SIX2 (Sine oculis homeobox homolog 2)
          Length = 291

 Score = 35.4 bits (80), Expect = 0.052
 Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 1/49 (2%)

Query: 199 REQIARLEKEFYRENYVSRPR-RCELAAALNLPETTIKVWFQNRRMKDK 246
           +E+   + +E+Y  N    PR + ELA A  L  T +  WF+NRR +D+
Sbjct: 132 KEKSRSVLREWYAHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDR 180



>gi|12643346|sp|Q9NQ69|LHX9_HUMAN   LIM/homeobox protein Lhx9
          Length = 388

 Score = 35.4 bits (80), Expect = 0.052
 Identities = 19/64 (29%), Positives = 31/64 (48%)

Query: 187 SDQMRRYRTAFTREQIARLEKEFYRENYVSRPRRCELAAALNLPETTIKVWFQNRRMKDK 246
           S + +R RT+F   Q+  ++  F   +        +LA    L +  ++VWFQN R K +
Sbjct: 255 SQKTKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQVWFQNARAKFR 314

Query: 247 RQRL 250
           R  L
Sbjct: 315 RNLL 318



>gi|2495306|sp|Q14863|PO6F1_HUMAN   POU domain, class 6, transcription factor 1 (mPOU homeobox protein)
           (Brain-specific homeobox/POU domain protein 5) (Brain-5)
           (Brn-5 protein)
          Length = 301

 Score = 35.0 bits (79), Expect = 0.068
 Identities = 18/52 (34%), Positives = 26/52 (50%)

Query: 191 RRYRTAFTREQIARLEKEFYRENYVSRPRRCELAAALNLPETTIKVWFQNRR 242
           R+ RT+FT + I  L   F +    +     E+A  LN     ++VWF NRR
Sbjct: 235 RKRRTSFTPQAIEALNAYFEKNPLPTGQEITEIAKELNYDREVVRVWFCNRR 286



>gi|2495290|sp|Q15475|SIX1_HUMAN   Homeobox protein SIX1 (Sine oculis homeobox homolog 1)
          Length = 284

 Score = 35.0 bits (79), Expect = 0.068
 Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 1/49 (2%)

Query: 199 REQIARLEKEFYRENYVSRPR-RCELAAALNLPETTIKVWFQNRRMKDK 246
           +E+   + +E+Y  N    PR + ELA A  L  T +  WF+NRR +D+
Sbjct: 132 KEKSRGVLREWYAHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDR 180



>gi|1345629|sp|P49335|PO3F4_HUMAN   POU domain, class 3, transcription factor 4 (Brain-specific
           homeobox/POU domain protein 4) (Brain-4) (Brn-4)
          Length = 361

 Score = 35.0 bits (79), Expect = 0.068
 Identities = 24/76 (31%), Positives = 35/76 (46%), Gaps = 4/76 (5%)

Query: 185 SASDQMRRYRTAFTREQIARLEKEFYRENYVSRPRRCELAAALNLPETTIKVWFQNRRMK 244
           +A  + R+ RT+        LE  F +    +      LA +L L +  ++VWF NRR K
Sbjct: 273 AAQGRKRKKRTSIEVSVKGVLETHFLKCPKPAAQEISSLADSLQLEKEVVRVWFCNRRQK 332

Query: 245 DKRQRLAMTWPHPADP 260
           +KR    MT P    P
Sbjct: 333 EKR----MTPPGDQQP 344



>gi|27923801|sp|Q8TE12|LMX1A_HUMAN   LIM homeobox transcription factor 1 alpha (LIM/homeobox protein
           LMX1A) (LIM-homeobox protein 1.1) (LMX-1.1)
          Length = 382

 Score = 35.0 bits (79), Expect = 0.068
 Identities = 27/85 (31%), Positives = 36/85 (42%), Gaps = 2/85 (2%)

Query: 191 RRYRTAFTREQIARLEKEFYRENYVSRPRRCELAAALNLPETTIKVWFQNRRMKDKRQRL 250
           +R RT  T +Q    +  F   +   R  R  LAA   L    ++VWFQN+R K K  +L
Sbjct: 196 KRPRTILTTQQRRAFKASFEVSSKPCRKVRETLAAETGLSVRVVQVWFQNQRAKMK--KL 253

Query: 251 AMTWPHPADPAFYTYMMSHAAAAGG 275
           A            T  +S A   GG
Sbjct: 254 ARRQQQQQQDQQNTQRLSSAQTNGG 278



>gi|12230578|sp|O95475|SIX6_HUMAN   Homeobox protein SIX6 (Sine oculis homeobox homolog 6) (Optic
           homeobox 2) (Homeodomain protein OPTX2)
          Length = 246

 Score = 35.0 bits (79), Expect = 0.068
 Identities = 18/54 (33%), Positives = 32/54 (59%), Gaps = 1/54 (1%)

Query: 194 RTAFTREQIARLEKEFYREN-YVSRPRRCELAAALNLPETTIKVWFQNRRMKDK 246
           +T   +E+   L +E+Y ++ Y +  ++ ELA A  L  T +  WF+NRR +D+
Sbjct: 131 KTHCFKERTRNLLREWYLQDPYPNPSKKRELAQATGLTPTQVGNWFKNRRQRDR 184



>gi|6094293|sp|O95343|SIX3_HUMAN   Homeobox protein SIX3 (Sine oculis homeobox homolog 3)
          Length = 332

 Score = 34.7 bits (78), Expect = 0.088
 Identities = 18/54 (33%), Positives = 32/54 (59%), Gaps = 1/54 (1%)

Query: 194 RTAFTREQIARLEKEFYREN-YVSRPRRCELAAALNLPETTIKVWFQNRRMKDK 246
           +T   +E+   L +E+Y ++ Y +  ++ ELA A  L  T +  WF+NRR +D+
Sbjct: 209 KTHCFKERTRSLLREWYLQDPYPNPSKKRELAQATGLTPTQVGNWFKNRRQRDR 262



>gi|13959566|sp|Q99717|SMAD5_HUMAN   Mothers against decapentaplegic homolog 5 (SMAD 5) (Mothers against
           DPP homolog 5) (Smad5) (hSmad5) (JV5-1)
          Length = 465

 Score = 34.3 bits (77), Expect = 0.12
 Identities = 15/37 (40%), Positives = 20/37 (54%)

Query: 255 PHPADPAFYTYMMSHAAAAGGLPYPFPSHLPLPYYSP 291
           P+P  PA  TY  S A++  G P+  P+  P P Y P
Sbjct: 192 PYPPSPASSTYPNSPASSGPGSPFQLPADTPPPAYMP 228



>gi|8247930|sp|O60663|LMX1B_HUMAN   LIM homeobox transcription factor 1 beta (LIM/homeobox protein
           LMX1B) (LIM-homeobox protein 1.2) (LMX-1.2)
          Length = 379

 Score = 34.3 bits (77), Expect = 0.12
 Identities = 20/57 (35%), Positives = 28/57 (49%)

Query: 191 RRYRTAFTREQIARLEKEFYRENYVSRPRRCELAAALNLPETTIKVWFQNRRMKDKR 247
           +R RT  T +Q    +  F   +   R  R  LAA   L    ++VWFQN+R K K+
Sbjct: 197 KRPRTILTTQQRRAFKASFEVSSKPCRKVRETLAAETGLSVRVVQVWFQNQRAKMKK 253



>gi|729094|sp|P39880|CUTL1_HUMAN   CCAAT displacement protein (CDP) (Cut-like 1)
          Length = 1505

 Score = 33.9 bits (76), Expect = 0.15
 Identities = 17/60 (28%), Positives = 32/60 (53%)

Query: 189  QMRRYRTAFTREQIARLEKEFYRENYVSRPRRCELAAALNLPETTIKVWFQNRRMKDKRQ 248
            Q+++ R     E+   L++ + ++ Y S     +LA  LNL  +T+  WF N R + +R+
Sbjct: 1243 QLKKPRVVLAPEEKEALKRAYQQKPYPSPKTIEDLATQLNLKTSTVINWFHNYRSRIRRE 1302



>gi|25453064|sp|Q9UPT6|JIP3_HUMAN   C-jun-amino-terminal kinase interacting protein 3 (JNK-interacting
           protein 3) (JIP-3) (JNK MAP kinase scaffold protein 3)
           (Mitogen-activated protein kinase 8-interacting protein
           3)
          Length = 1334

 Score = 33.5 bits (75), Expect = 0.20
 Identities = 35/137 (25%), Positives = 63/137 (45%), Gaps = 19/137 (13%)

Query: 184 CSASDQM-RRYRTAFTREQIAR--LEKEFYRENYVSRPRRCELAAALNLPETTIKVWFQN 240
           C+ SD++    R  FTR ++AR  +E+  Y+E      R  EL  A+   E  I+   ++
Sbjct: 507 CTESDKIPMAQRRRFTRVEMARVLMERNQYKE------RLMELQEAVRWTEM-IRASREH 559

Query: 241 RRMKDKRQRLAMTWPHPADPAFYTYMMSHAAAAGGLPYPFPSHLPLPYYSPVGLGXXXXX 300
             +++K++  +  W       F++ + S +++      P+PS + + Y SP   G     
Sbjct: 560 PSVQEKKK--STIWQ------FFSRLFSSSSSPPPAKRPYPS-VNIHYKSPTTAGFSQRR 610

Query: 301 XXXXXPFSGSLRPLDTF 317
                P S   RPL+ F
Sbjct: 611 NHAMCPISAGSRPLEFF 627



>gi|12230612|sp|Q9UIU6|SIX4_HUMAN   Homeobox protein SIX4 (Sine oculis homeobox homolog 4)
          Length = 760

 Score = 33.1 bits (74), Expect = 0.26
 Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 1/49 (2%)

Query: 199 REQIARLEKEFYREN-YVSRPRRCELAAALNLPETTIKVWFQNRRMKDK 246
           +E+     KE Y++N Y S   +  LA    L  T +  WF+NRR +D+
Sbjct: 210 KEKSRNALKELYKQNRYPSPAEKRHLAKITGLSLTQVSNWFKNRRQRDR 258



>gi|400659|sp|Q01860|PO5F1_HUMAN   POU domain, class 5, transcription factor 1 (Octamer-binding
           transcription factor 3) (Oct-3) (Oct-4)
          Length = 360

 Score = 32.7 bits (73), Expect = 0.34
 Identities = 28/105 (26%), Positives = 42/105 (40%), Gaps = 9/105 (8%)

Query: 191 RRYRTAFTREQIARLEKEFYRENYVSRPRRCELAAALNLPETTIKVWFQNRRMKDKRQRL 250
           +R RT+        LE  F +    +  +   +A  L L +  ++VWF NRR K KR   
Sbjct: 231 KRKRTSIENRVRGNLENLFLQCPKPTLQQISHIAQQLGLEKDVVRVWFCNRRQKGKRS-- 288

Query: 251 AMTWPHPADPAFYTYMMSHAAAAGGLPYPFPSHLPLPYYSPVGLG 295
                  +D A      +  +   G P  FP   P P++   G G
Sbjct: 289 ------SSDYAQREDFEAAGSPFSGGPVSFPL-APGPHFGTPGYG 326



>gi|20141312|sp|O14529|CUTL2_HUMAN   Homeobox protein Cux-2 (Cut-like 2)
          Length = 1505

 Score = 32.7 bits (73), Expect = 0.34
 Identities = 19/62 (30%), Positives = 30/62 (48%)

Query: 189  QMRRYRTAFTREQIARLEKEFYRENYVSRPRRCELAAALNLPETTIKVWFQNRRMKDKRQ 248
            Q+++ R     E+   L K +  E Y S+     L+  LNL   T+  WF N R + +R+
Sbjct: 1186 QIKKPRVVLAPEEKEALRKAYQLEPYPSQQTIELLSFQLNLKTNTVINWFHNYRSRMRRE 1245

Query: 249  RL 250
             L
Sbjct: 1246 ML 1247



>gi|44889075|sp|Q9H4I2|ZHX3_HUMAN   Zinc fingers and homeoboxes protein 3 (Triple homeobox 1 protein)
          Length = 956

 Score = 32.0 bits (71), Expect = 0.57
 Identities = 12/40 (30%), Positives = 21/40 (52%)

Query: 205 LEKEFYRENYVSRPRRCELAAALNLPETTIKVWFQNRRMK 244
           L+  F++  Y ++   C L      PE  +K+WF  +R+K
Sbjct: 319 LKNSFHKFPYPTKAELCYLTVVTKYPEEQLKIWFTAQRLK 358



>gi|50400978|sp|Q7Z5J4|RAI1_HUMAN   Retinoic acid induced protein 1
          Length = 1906

 Score = 32.0 bits (71), Expect = 0.57
 Identities = 24/83 (28%), Positives = 36/83 (43%), Gaps = 3/83 (3%)

Query: 465 ALSRQEVPLPRPGIEGEEIQNASPCPRPFGGDMALDS--HPEIGLRSSQLLPLGCFHYSP 522
           AL  Q+    RP   G  +Q++SP P  + G+ +L +   P+      Q LP G   Y  
Sbjct: 84  ALPTQQGLQGRPAFPGYGVQDSSPYPGRYAGEESLQAWGAPQPPPPQPQPLPAGVAKYDE 143

Query: 523 TAETPATICPPENKRECRGGQLP 545
                 T  PP  +   +G Q+P
Sbjct: 144 NL-MKKTAVPPSRQYAEQGAQVP 165



>gi|12644347|sp|P78413|IRX4_HUMAN   Iroquois-class homeodomain protein IRX-4 (Iroquois homeobox protein
           4) (Homeodomain protein IRXA3)
          Length = 519

 Score = 31.2 bits (69), Expect = 0.98
 Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 4/61 (6%)

Query: 198 TREQIARLE---KEFYRENYVSRPRRCELAAALNLPETTIKVWFQNRRMKDKRQRLAMTW 254
           TRE  + L+   +E  +  Y ++  +  LA    +  T +  WF N R + K++   MTW
Sbjct: 150 TRETTSTLKAWLQEHRKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKEN-KMTW 208

Query: 255 P 255
           P
Sbjct: 209 P 209



>gi|22001988|sp|Q9Y566|SHK1_HUMAN   SH3 and multiple ankyrin repeat domains protein 1 (Shank1)
            (Somatostatin receptor interacting protein) (SSTR
            interacting protein) (SSTRIP)
          Length = 2161

 Score = 31.2 bits (69), Expect = 0.98
 Identities = 39/135 (28%), Positives = 47/135 (34%), Gaps = 15/135 (11%)

Query: 229  LPETTIKVWFQNRRMKDKRQR---------LAMTWPHPADPAFYTY--MMSHAAAAGGLP 277
            +PE T  +  Q +R+ D  Q          L   WP P  P   T   +   AAAA G  
Sbjct: 1912 VPERTSSL--QRQRLSDDSQSSLLSKPVSSLFQNWPKPPLPPLPTGTGVSPTAAAAPGAT 1969

Query: 278  YPFPSHLPLPYYSPVGLGXXXXXXXXXXPFSGSLRPLDTFRVLSQPYPRPELLCAFRHPP 337
             P  S          G+             S SL P    +V   P PRP  L      P
Sbjct: 1970 SPSASSSSTSTRHLQGVEFEMRPPLLRRAPSPSLLPASEHKV--SPAPRPSSLPILPSGP 2027

Query: 338  LYPGPAHGLGASAGG 352
            LYPG     G+  GG
Sbjct: 2028 LYPGLFDIRGSPTGG 2042



>gi|47117871|sp|P78411|IRX5_HUMAN   Iroquois-class homeodomain protein IRX-5 (Iroquois homeobox protein
           5) (Homeodomain protein IRXB2) (IRX-2A)
          Length = 482

 Score = 30.8 bits (68), Expect = 1.3
 Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 4/65 (6%)

Query: 193 YRTAFTREQIARLE---KEFYRENYVSRPRRCELAAALNLPETTIKVWFQNRRMKDKRQR 249
           YR   TR+  A L+    E  +  Y ++  +  LA    +  T +  WF N R + K++ 
Sbjct: 116 YRKNATRDATATLKAWLNEHRKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKEN 175

Query: 250 LAMTW 254
             MTW
Sbjct: 176 -KMTW 179



>gi|47117908|sp|Q9BZI1|IRX2_HUMAN   Iroquois-class homeodomain protein IRX-2 (Iroquois homeobox protein
           2) (Homeodomain protein IRXA2)
          Length = 471

 Score = 30.8 bits (68), Expect = 1.3
 Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 4/65 (6%)

Query: 193 YRTAFTREQIARLE---KEFYRENYVSRPRRCELAAALNLPETTIKVWFQNRRMKDKRQR 249
           YR   TR+  A L+    E  +  Y ++  +  LA    +  T +  WF N R + K++ 
Sbjct: 117 YRKNATRDATATLKAWLNEHRKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKEN 176

Query: 250 LAMTW 254
             MTW
Sbjct: 177 -KMTW 180



>gi|37999770|sp|Q9BYU1|PBX4_HUMAN   Pre-B-cell leukemia transcription factor-4 (Homeobox protein PBX4)
          Length = 330

 Score = 30.8 bits (68), Expect = 1.3
 Identities = 32/145 (22%), Positives = 54/145 (37%), Gaps = 17/145 (11%)

Query: 154 EALVGSPNGGSETPKXXXXXXXXXXXXTLACSASDQMRRYRTAFTREQIARLEKEFY--- 210
           E +VG+ +G     +            TL     D  RR R  F+++    L + FY   
Sbjct: 131 ERMVGAIHGKFSAIQMQLKQSTCEAVMTLRSRLLDA-RRKRRNFSKQATEVLNEYFYSHL 189

Query: 211 RENYVSRPRRCELAAALNLPETTIKVWFQNRRMKDKRQ-------------RLAMTWPHP 257
              Y S   + ELA    L  + +  WF N+R++ K+              + A+     
Sbjct: 190 NNPYPSEEAKEELARKGGLTISQVSNWFGNKRIRYKKNMGKFQEEATIYTGKTAVDTTEV 249

Query: 258 ADPAFYTYMMSHAAAAGGLPYPFPS 282
             P  +   +S  ++    P+P PS
Sbjct: 250 GVPGNHASCLSTPSSGSSGPFPLPS 274



>gi|32363202|sp|Q969V6|MRTFA_HUMAN   Myocardin-related transcription factor A (MRTF-A) (Megakaryoblastic
           leukemia 1 protein) (Megacaryocytic acute leukemia
           protein)
          Length = 931

 Score = 30.4 bits (67), Expect = 1.7
 Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 1/54 (1%)

Query: 199 REQIARLEKEFYRENYV-SRPRRCELAAALNLPETTIKVWFQNRRMKDKRQRLA 251
           R  + R   E Y +  + SRP R EL     L ET+ +   Q +++K KR RLA
Sbjct: 14  RRSLERARTEDYLKRKIRSRPERSELVRMHILEETSAEPSLQAKQLKLKRARLA 67



>gi|28201858|sp|Q06416|PO5L_HUMAN   POU domain, class 5, transcription factor 1-like protein 1 (Octamer
           binding protein 3-like)
          Length = 359

 Score = 30.4 bits (67), Expect = 1.7
 Identities = 22/73 (30%), Positives = 31/73 (42%), Gaps = 9/73 (12%)

Query: 223 LAAALNLPETTIKVWFQNRRMKDKRQRLAMTWPHPADPAFYTYMMSHAAAAGGLPYPFPS 282
           +A  L L +  ++VWF NRR K KR          +D A      +  +   G P  FP 
Sbjct: 262 IAQQLGLEKDVVRVWFCNRRQKGKRS--------SSDYAQREDFEAAGSPFSGGPVSFPP 313

Query: 283 HLPLPYYSPVGLG 295
             P P++   G G
Sbjct: 314 -APGPHFGTPGYG 325



>gi|28201859|sp|Q9BZV7|PO5M_HUMAN   POU domain, class 5, transcription factor 1-like protein 2
          Length = 359

 Score = 30.4 bits (67), Expect = 1.7
 Identities = 22/73 (30%), Positives = 31/73 (42%), Gaps = 9/73 (12%)

Query: 223 LAAALNLPETTIKVWFQNRRMKDKRQRLAMTWPHPADPAFYTYMMSHAAAAGGLPYPFPS 282
           +A  L L +  ++VWF NRR K KR          +D A      +  +   G P  FP 
Sbjct: 262 IAQQLGLEKDVVRVWFCNRRQKGKRS--------SSDYAQREDFEAAGSPFSGGPVSFPP 313

Query: 283 HLPLPYYSPVGLG 295
             P P++   G G
Sbjct: 314 -APGPHFGTPGYG 325



>gi|32363203|sp|Q9ULH7|MRTFB_HUMAN   Myocardin-related transcription factor B (MRTF-B)
          Length = 1088

 Score = 30.4 bits (67), Expect = 1.7
 Identities = 23/56 (41%), Positives = 27/56 (48%), Gaps = 4/56 (7%)

Query: 200 EQIARLEK----EFYRENYVSRPRRCELAAALNLPETTIKVWFQNRRMKDKRQRLA 251
           EQI  LE+     F +    SRP R EL     L ET  +   Q  +MK KR RLA
Sbjct: 72  EQIKSLERARTENFLKHKIRSRPDRSELVRMHILEETFAEPSLQATQMKLKRARLA 127



>gi|44888553|sp|Q9Y6X8|ZHX2_HUMAN   Zinc fingers and homeoboxes protein 2
          Length = 837

 Score = 30.0 bits (66), Expect = 2.2
 Identities = 15/50 (30%), Positives = 23/50 (46%)

Query: 198 TREQIARLEKEFYRENYVSRPRRCELAAALNLPETTIKVWFQNRRMKDKR 247
           T+EQIA L+  F +  +        L     L  + IK WF + R + +R
Sbjct: 447 TKEQIAHLKASFLQSQFPDDAEVYRLIEVTGLARSEIKKWFSDHRYRCQR 496



>gi|38258651|sp|Q9NTG7|SIR3_HUMAN   NAD-dependent deacetylase sirtuin 3, mitochondrial precursor
           (SIR2-like protein 3) (hSIRT3)
          Length = 399

 Score = 30.0 bits (66), Expect = 2.2
 Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 1/40 (2%)

Query: 313 PLDTFRVLSQPYPRPELLCAFRHPPLYPGPAHGLGASAGG 352
           PLD  R L +P PRPE+  AFR  P    P+    +  GG
Sbjct: 60  PLDPARPLQRP-PRPEVPRAFRRQPRAAAPSFFFSSIKGG 98



>gi|730281|sp|P40426|PBX3_HUMAN   Pre-B-cell leukemia transcription factor-3 (Homeobox protein PBX3)
          Length = 434

 Score = 29.3 bits (64), Expect = 3.7
 Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 3/60 (5%)

Query: 191 RRYRTAFTREQIARLEKEFYRE---NYVSRPRRCELAAALNLPETTIKVWFQNRRMKDKR 247
           RR R  F+++    L + FY      Y S   + ELA   ++  + +  WF N+R++ K+
Sbjct: 236 RRKRRNFSKQATEILNEYFYSHLSNPYPSEEAKEELAKKCSITVSQVSNWFGNKRIRYKK 295



>gi|5921743|sp|Q12873|CHD3_HUMAN   Chromodomain helicase-DNA-binding protein 3 (CHD-3) (Mi-2 autoantigen
            240 kDa protein) (Mi2-alpha)
          Length = 1944

 Score = 29.3 bits (64), Expect = 3.7
 Identities = 12/30 (40%), Positives = 19/30 (63%)

Query: 266  MMSHAAAAGGLPYPFPSHLPLPYYSPVGLG 295
            ++S  A+ G  P+P P++ P PY +P G G
Sbjct: 1869 ILSRLASKGTEPHPTPAYPPGPYATPPGYG 1898



>gi|2500587|sp|Q15427|S3B4_HUMAN   Splicing factor 3B subunit 4 (Spliceosome associated protein 49)
           (SAP 49) (SF3b50) (Pre-mRNA splicing factor SF3b 49 kDa
           subunit)
          Length = 424

 Score = 28.9 bits (63), Expect = 4.8
 Identities = 26/85 (30%), Positives = 35/85 (41%), Gaps = 12/85 (14%)

Query: 269 HAAAAGGLPYPFPSHLPLPYYSPVGLGXXXXXXXXXXPFSGSLRPLDTFRVLSQPYPRPE 328
           H    GG+P+P  S + L ++ P GLG          P SG   P      +  P P P 
Sbjct: 294 HPFPPGGMPHPGMSQMQLAHHGPHGLG----HPHAGPPGSGGQPPPRPPPGMPHPGP-PP 348

Query: 329 LLCAFRHPPL-----YPG--PAHGL 346
           +    R PP      +PG  P HG+
Sbjct: 349 MGMPPRGPPFGSPMGHPGPMPPHGM 373



>gi|1352729|sp|P40425|PBX2_HUMAN   Pre-B-cell leukemia transcription factor-2 (Homeobox protein PBX2)
           (G17 protein)
          Length = 430

 Score = 28.9 bits (63), Expect = 4.8
 Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 3/60 (5%)

Query: 191 RRYRTAFTREQIARLEKEFYRE---NYVSRPRRCELAAALNLPETTIKVWFQNRRMKDKR 247
           RR R  F+++    L + FY      Y S   + ELA    +  + +  WF N+R++ K+
Sbjct: 245 RRKRRNFSKQATEVLNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKK 304



>gi|14285363|sp|Q9NPZ5|B3G2_HUMAN   Galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase 2
           (Beta-1,3-glucuronyltransferase 2)
           (Glucuronosyltransferase-S) (GlcAT-S)
           (UDP-glucuronosyltransferase-S) (GlcAT-D)
          Length = 323

 Score = 28.9 bits (63), Expect = 4.8
 Identities = 20/66 (30%), Positives = 26/66 (39%), Gaps = 5/66 (7%)

Query: 279 PFPSHLPLPYYSP--VGLGXXXXXXXXXXPFSGSLRPLDTFRVLSQPYPRPELLCAFRHP 336
           P P   P PY+SP  VG G          P  G+ +   +     QP P P+L   +   
Sbjct: 30  PVPPLTPRPYFSPYAVGRGGARLPLRRGGPAHGTQKRNQS---RPQPQPEPQLPTIYAIT 86

Query: 337 PLYPGP 342
           P Y  P
Sbjct: 87  PTYSRP 92



>gi|51316529|sp|Q9HA82|LSS4_HUMAN   LAG1 longevity assurance homolog 4
          Length = 394

 Score = 28.9 bits (63), Expect = 4.8
 Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 4/55 (7%)

Query: 198 TREQI---ARLEKEFYRENYVSR-PRRCELAAALNLPETTIKVWFQNRRMKDKRQ 248
           TR Q+   A LEK F  E +  + P+   LAA   L     + WF+ RR +D+ Q
Sbjct: 74  TRRQVKPNATLEKHFLTEGHRPKEPQLSLLAAQCGLTLQQTQRWFRRRRNQDRPQ 128



>gi|38372866|sp|Q8NB14|UBP38_HUMAN   Ubiquitin carboxyl-terminal hydrolase 38 (Ubiquitin thiolesterase
           38) (Ubiquitin-specific processing protease 38)
           (Deubiquitinating enzyme 38) (HP43.8KD)
          Length = 1042

 Score = 28.9 bits (63), Expect = 4.8
 Identities = 33/118 (27%), Positives = 49/118 (41%), Gaps = 24/118 (20%)

Query: 379 CASTSR-----SDSFLTFAPS-------VLSKASSVALD-----QREEPKAPECQILVNF 421
           C STS+     +D  L F PS       V   ASS ++      Q   P   E  ++ N 
Sbjct: 603 CRSTSQKVEAFTDLSLAFCPSSSLENMSVQDPASSPSIQDGGLMQASVPGPSEEPVVYN- 661

Query: 422 AVAPYWAEIACDSLILSPNVACPTNGFFSDYVDSTFLVSNPAPALSRQEVPLPRPGIE 479
              P  A   CDSL+    +  P N F+    ++T + +     L  ++VP  +PG E
Sbjct: 662 ---PTTAAFICDSLVNEKTIGSPPNEFYCS--ENTSVPNESNKILVNKDVP-QKPGGE 713



>gi|34222891|sp|Q8IZJ4|RGRP_HUMAN   Ral-GDS related protein (hRGR)
          Length = 473

 Score = 28.9 bits (63), Expect = 4.8
 Identities = 25/91 (27%), Positives = 35/91 (38%), Gaps = 15/91 (16%)

Query: 462 PAPALSRQEVPLPRPGIEGEEIQNASPCPRPFGGDMALDSHPEIGLRSSQLLPLGCFHYS 521
           P P  ++ + P PRPG     +    P P P   D+     PE     + L P G  H +
Sbjct: 116 PEPNEAKPDDPAPRPGQHALTMPALEPAP-PLLADLGPALEPE---SPAALGPPGYLHSA 171

Query: 522 P-------TAETPATICPPENKRE----CRG 541
           P           P T+  P++  E    CRG
Sbjct: 172 PGPAPAPGEGPPPGTVLEPQSAPESSCPCRG 202



>gi|20141754|sp|P41778|PBX1_MOUSE   Pre-B-cell leukemia transcription factor-1 (Homeobox protein PBX1)
 gi|730279|sp|P40424|PBX1_HUMAN   Pre-B-cell leukemia transcription factor-1 (Homeobox protein PBX1)
           (Homeobox protein PRL)
          Length = 430

 Score = 28.5 bits (62), Expect = 6.3
 Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 3/60 (5%)

Query: 191 RRYRTAFTREQIARLEKEFYRE---NYVSRPRRCELAAALNLPETTIKVWFQNRRMKDKR 247
           RR R  F ++    L + FY      Y S   + ELA    +  + +  WF N+R++ K+
Sbjct: 234 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKK 293



>gi|47117874|sp|P78415|IRX3_HUMAN   Iroquois-class homeodomain protein IRX-3 (Iroquois homeobox protein
           3) (Homeodomain protein IRXB1)
          Length = 501

 Score = 28.5 bits (62), Expect = 6.3
 Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 4/60 (6%)

Query: 198 TREQIARLE---KEFYRENYVSRPRRCELAAALNLPETTIKVWFQNRRMKDKRQRLAMTW 254
           TRE  + L+    E  +  Y ++  +  LA    +  T +  WF N R + K++   MTW
Sbjct: 135 TRESTSTLKAWLNEHRKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKEN-KMTW 193



>gi|46396941|sp|Q8N196|SIX5_HUMAN   Homeobox protein SIX5 (DM locus-associated homeodomain protein)
          Length = 739

 Score = 28.5 bits (62), Expect = 6.3
 Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 1/41 (2%)

Query: 207 KEFYREN-YVSRPRRCELAAALNLPETTIKVWFQNRRMKDK 246
           K  YR N Y +   +  LA    L  T +  WF+NRR +D+
Sbjct: 217 KACYRGNRYPTPDEKRRLATLTGLSLTQVSNWFKNRRQRDR 257



>gi|44888551|sp|Q9UKY1|ZHX1_HUMAN   Zinc fingers and homeoboxes protein 1
          Length = 873

 Score = 28.1 bits (61), Expect = 8.3
 Identities = 22/79 (27%), Positives = 33/79 (41%), Gaps = 9/79 (11%)

Query: 198 TREQIARLEKEFYRENYVSRPRRCELAAALNLPETTIKVWFQNRRMKDKRQRLAMTWPHP 257
           T EQ+  L+  F R  + S     +LA    L  T I  WF + R   K   L   W   
Sbjct: 668 TPEQLHMLKSAFVRTQWPSPEEYDKLAKESGLARTDIVSWFGDTRYAWKNGNL--KW--- 722

Query: 258 ADPAFYTYMMSHAAAAGGL 276
               +Y Y  +++++  GL
Sbjct: 723 ----YYYYQSANSSSMNGL 737



>gi|51338800|sp|Q13207|TBX2_HUMAN   T-box transcription factor TBX2 (T-box protein 2)
          Length = 702

 Score = 28.1 bits (61), Expect = 8.3
 Identities = 22/68 (32%), Positives = 24/68 (35%), Gaps = 14/68 (20%)

Query: 260 PAFYTYMMSHAAAAGGLPYPFPSHLPLPYYSPVGLGXXXXXXXXXXPFSGSLRPLDTFRV 319
           P  YTYM + AAAA  LP            S               PF GS RP    R+
Sbjct: 564 PYPYTYMAAAAAAASALPAT----------SAAAAAAAAAGSLSRSPFLGSARP----RL 609

Query: 320 LSQPYPRP 327
              PY  P
Sbjct: 610 RFSPYQIP 617



>gi|12230429|sp|P57723|PCBP4_HUMAN   Poly(rC)-binding protein 4 (Alpha-CP4)
          Length = 403

 Score = 28.1 bits (61), Expect = 8.3
 Identities = 22/78 (28%), Positives = 30/78 (38%), Gaps = 10/78 (12%)

Query: 271 AAAGGLPYPFPSHLPLPYYSPVGLGXXXXXXXXXXPFSGSLRPLDTFRVLSQPYPRPELL 330
           + +GG P   P+ LP P+  P+             P++ SL      +      P P L 
Sbjct: 314 STSGGTPSSAPADLPAPFSPPLTALPTAPPGLLGTPYAISLSNFIGLK------PMPFLA 367

Query: 331 CAFRHPPLYPGPAHGLGA 348
                PP  PGP  GL A
Sbjct: 368 L----PPASPGPPPGLAA 381



>gi|21264472|sp|P37198|NU62_HUMAN   Nuclear pore glycoprotein p62 (62 kDa nucleoporin)
          Length = 522

 Score = 28.1 bits (61), Expect = 8.3
 Identities = 40/173 (23%), Positives = 60/173 (34%), Gaps = 13/173 (7%)

Query: 25  SNLSEAVGSPLPEPPEKMVPRGCL---SPRAVPPATXXXXXXXXXXXXXQPS-----SSD 76
           SNL+ A+ S +    +   P G +   S  +V PAT             QPS     S+ 
Sbjct: 119 SNLTNAISSTVTSS-QGTAPTGFVFGPSTTSVAPATTSGGFSFTGGSTAQPSGFNIGSAG 177

Query: 77  TESDFYEEIEVSCTPDCATGNAEYQHSKVPLLHPKEKELQGAGAPPFSE-AYSPTSMAFV 135
             +       +  TP  AT  A    +  P        +   G   F+  A +PTS A  
Sbjct: 178 NSAQPTAPATLPFTP--ATPAATTAGATQPAAPTPTATITSTGPSLFASIATAPTSSATT 235

Query: 136 CLCLYTPVLWTRCAGSGSEAL-VGSPNGGSETPKXXXXXXXXXXXXTLACSAS 187
            L L TPV       +G++   + +P   S T              T + S +
Sbjct: 236 GLSLCTPVTTAGAPTAGTQGFSLKAPGAASGTSTTTSTAATATATTTTSSSTT 288



>gi|14549162|sp|Q12967|GNDS_HUMAN   Ral guanine nucleotide dissociation stimulator (RalGEF) (RalGDS)
          Length = 914

 Score = 28.1 bits (61), Expect = 8.3
 Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 7/49 (14%)

Query: 462 PAPALSRQEVPLPRPGIEGEEIQNASPCPRPFGGDMALDSHPEIGLRSS 510
           PAPA   +  P P PG E E     +P P P   ++     P +GL S+
Sbjct: 287 PAPAPEPEPAPTPAPGSELE----VAPAPAP---ELQQAPEPAVGLESA 328



>gi|47117872|sp|P78412|IRX6_HUMAN   Iroquois-class homeodomain protein IRX-6 (Iroquois homeobox protein
           6) (Homeodomain protein IRXB3)
          Length = 445

 Score = 28.1 bits (61), Expect = 8.3
 Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 4/60 (6%)

Query: 198 TREQIARLE---KEFYRENYVSRPRRCELAAALNLPETTIKVWFQNRRMKDKRQRLAMTW 254
           TRE  + L+    E  +  Y ++  +  LA    +  T +  WF N R + K++   MTW
Sbjct: 154 TRETTSTLKAWLNEHRKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKEN-KMTW 212



>gi|30172872|sp|Q8IXJ9|ASXL1_HUMAN   Putative Polycomb group protein ASXL1 (Additional sex combs-like
           protein 1)
          Length = 1541

 Score = 28.1 bits (61), Expect = 8.3
 Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 2/43 (4%)

Query: 458 LVSNPAPALSRQEVPLPRPGIEGEEIQNASPCPRPFGGDMALD 500
           +V  P P  SR+ +P   P + GEE + A+P P    GD+  +
Sbjct: 907 VVKQPKPE-SREHIPSVEPQV-GEEWEKAAPTPPALPGDLTAE 947



>gi|12585199|sp|O00257|CBX4_HUMAN   Chromobox protein homolog 4 (Polycomb 2 homolog) (Pc2) (hPc2)
          Length = 558

 Score = 28.1 bits (61), Expect = 8.3
 Identities = 21/60 (35%), Positives = 24/60 (40%), Gaps = 14/60 (23%)

Query: 109 HPKEKELQGAGAPPFSEAYSPTSMAFVCLCLYTPVLWTRCAGSGSEALVGSPNGGSETPK 168
           HP +K  QGAGA  +  A  P + A                G GSE   G PNG    PK
Sbjct: 191 HPPDKWAQGAGAKGYLGAVKPLAGA------------AGAPGKGSEK--GPPNGMMPAPK 236






  Database: Non-redundant SwissProt sequences
    Posted date:  Mar 15, 2005 10:11 AM
  Number of letters in database: 60,490,055
  Number of sequences in database:  164,271
  
Lambda     K      H
   0.318    0.134    0.422 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,551,303
Number of Sequences: 164271
Number of extensions: 85154
Number of successful extensions: 258
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 215
Number of HSP's gapped (non-prelim): 43
length of query: 556
length of database: 6,424,444
effective HSP length: 100
effective length of query: 456
effective length of database: 5,233,944
effective search space: 2386678464
effective search space used: 2386678464
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.1 bits)