RID=1111169203-31599-201669390226.BLASTQ4, FGENESH: 14 8 exon (s) 269414

BLASTP 2.2.10 [Oct-19-2004]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
RID: 1111169203-31599-201669390226.BLASTQ4
Query= FGENESH: 14 8 exon (s) 269414 - 286985 569 aa, chain - (569 letters)
Database: Non-redundant SwissProt sequences 164,271 sequences; 60,490,055 total letters
If you have any problems or questions with the results of this search
please refer to the BLAST FAQs
Taxonomy reports
Distribution of 145 Blast Hits on the Query Sequence


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|2828197|sp|P31271|HXA13_HUMAN  Homeobox protein Hox-A13 (...   320   6e-88 
gi|20141539|sp|P31276|HXC13_HUMAN  Homeobox protein Hox-C13 ...   194   5e-50 
gi|50403792|sp|Q92826|HXB13_HUMAN  Homeobox protein Hox-B13       170   1e-42 
gi|2851475|sp|P35453|HXD13_HUMAN  Homeobox protein Hox-D13 (...   167   9e-42 
gi|3287858|sp|O43248|HXC11_HUMAN  Homeobox protein Hox-C11         59   6e-09 
gi|12644203|sp|P31277|HXD11_HUMAN  Homeobox protein Hox-D11 ...    57   1e-08 
gi|13124744|sp|P31270|HXA11_HUMAN  Homeobox protein Hox-A11 ...    56   4e-08 
gi|20141507|sp|P17482|HXB9_HUMAN  Homeobox protein Hox-B9 (H...    56   4e-08 
gi|20141538|sp|P31275|HXC12_HUMAN  Homeobox protein Hox-C12 ...    55   6e-08 
gi|20141612|sp|Q9NYD6|HXC10_HUMAN  Homeobox protein Hox-C10        54   1e-07 
gi|13124743|sp|P31260|HXA10_HUMAN  Homeobox protein Hox-A10 ...    54   2e-07 
gi|20141537|sp|P31274|HXC9_HUMAN  Homeobox protein Hox-C9 (H...    53   2e-07 
gi|123289|sp|P28358|HXD10_HUMAN  Homeobox protein Hox-D10 (H...    53   3e-07 
gi|1708540|sp|P52945|IPF1_HUMAN  Insulin promoter factor-1 (...    53   3e-07 
gi|123286|sp|P28356|HXD9_HUMAN  Homeobox protein Hox-D9 (Hox...    52   7e-07 
gi|12644227|sp|P35452|HXD12_HUMAN  Homeobox protein Hox-D12 ...    52   7e-07 
gi|6166219|sp|P31269|HXA9_HUMAN  Homeobox protein Hox-A9 (Ho...    51   1e-06 
gi|20138327|sp|Q9BZM3|GSH2_HUMAN  Homeobox protein GSH-2           48   8e-06 
gi|27923786|sp|Q9H4S2|GSHI_HUMAN  Homeobox protein GSH-1           47   1e-05 
gi|123279|sp|P09017|HXC4_HUMAN  Homeobox protein Hox-C4 (Hox...    46   3e-05 
gi|1709078|sp|P50221|MEOX1_HUMAN  Homeobox protein MOX-1 (Me...    45   7e-05 
gi|20141491|sp|P09016|HXD4_HUMAN  Homeobox protein Hox-D4 (H...    44   2e-04 
gi|6093723|sp|O75364|PITX3_HUMAN  Pituitary homeobox 3 (Home...    43   3e-04 
gi|6016292|sp|O43364|HXA2_HUMAN  Homeobox protein Hox-A2           43   3e-04 
gi|123270|sp|P14652|HXB2_HUMAN  Homeobox protein Hox-B2 (Hox...    43   3e-04 
gi|1709079|sp|P50222|MEOX2_HUMAN  Homeobox protein MOX-2 (Me...    43   3e-04 
gi|6166217|sp|Q00056|HXA4_HUMAN  Homeobox protein Hox-A4 (Ho...    42   6e-04 
gi|13124737|sp|P13378|HXD8_HUMAN  Homeobox protein Hox-D8 (H...    42   7e-04 
gi|232262|sp|Q00444|HXC5_HUMAN  Homeobox protein Hox-C5 (Hox...    42   7e-04 
gi|123255|sp|P09629|HXB7_HUMAN  Homeobox protein Hox-B7 (Hox...    42   7e-04 
gi|52788238|sp|P20719|HXA5_HUMAN  Homeobox protein Hox-A5 (H...    41   0.001 
gi|1345720|sp|P47902|CDX1_HUMAN  Homeobox protein CDX-1 (Cau...    41   0.001 
gi|123268|sp|P14651|HXB3_HUMAN  Homeobox protein Hox-B3 (Hox...    40   0.002 
gi|6016293|sp|O43365|HXA3_HUMAN  Homeobox protein Hox-A3 (Ho...    40   0.002 
gi|6166216|sp|P49639|HXA1_HUMAN  Homeobox protein Hox-A1 (Ho...    40   0.002 
gi|400000|sp|P09067|HXB5_HUMAN  Homeobox protein Hox-B5 (Hox...    40   0.002 
gi|20141506|sp|P17481|HXB8_HUMAN  Homeobox protein Hox-B8 (H...    40   0.003 
gi|3023467|sp|O14627|CDX4_HUMAN  Homeobox protein CDX-4 (Cau...    39   0.004 
gi|17378385|sp|P31267|HXA6_HUMAN  Homeobox protein Hox-A6 (H...    39   0.005 
gi|13124738|sp|P17509|HXB6_HUMAN  Homeobox protein Hox-B6 (H...    39   0.005 
gi|547692|sp|P17483|HXB4_HUMAN  Homeobox protein Hox-B4 (Hox...    39   0.006 
gi|12644308|sp|P52951|GBX2_HUMAN  Homeobox protein GBX-2 (Ga...    39   0.006 
gi|6166222|sp|P31249|HXD3_HUMAN  Homeobox protein Hox-D3 (Ho...    38   0.011 
gi|20141282|sp|Q99626|CDX2_HUMAN  Homeobox protein CDX-2 (Ca...    38   0.011 
gi|6174907|sp|Q99697|PITX2_HUMAN  Pituitary homeobox 2 (RIEG...    38   0.011 
gi|45644931|sp|P50219|HLXB9_HUMAN  Homeobox protein HB9            38   0.011 
gi|13124745|sp|P31273|HXC8_HUMAN  Homeobox protein Hox-C8 (H...    37   0.014 
gi|37999860|sp|O14686|MLL2_HUMAN  Myeloid/lymphoid or mixed-...    37   0.014 
gi|123271|sp|P14653|HXB1_HUMAN  Homeobox protein Hox-B1 (Hox...    37   0.018 
gi|13959687|sp|P35548|MSX2_HUMAN  Homeobox protein MSX-2 (Ho...    37   0.024 
gi|42559826|sp|Q8IWN7|RP1L1_HUMAN  Retinitis pigmentosa 1-li...    37   0.024 
gi|2833256|sp|Q14774|HLX1_HUMAN  Homeobox protein HLX1 (Home...    36   0.031 
gi|29336920|sp|Q9BZE3|BARH1_HUMAN  BarH-like 1 homeobox prot...    36   0.041 
gi|13124451|sp|Q99575|POP1_HUMAN  Ribonucleases P/MRP protei...    36   0.041 
gi|3915721|sp|P31268|HXA7_HUMAN  Homeobox protein Hox-A7 (Ho...    36   0.041 
gi|23503066|sp|P28360|MSX1_HUMAN  Homeobox protein MSX-1 (Ho...    35   0.053 
gi|12230077|sp|Q14549|GBX1_HUMAN  Homeobox protein GBX-1 (Ga...    35   0.053 
gi|3024482|sp|P78337|PITX1_HUMAN  Pituitary homeobox 1 (Hind...    35   0.053 
gi|20141493|sp|P09630|HXC6_HUMAN  Homeobox protein Hox-C6 (H...    34   0.12  
gi|57015304|sp|Q04741|EMX1_HUMAN  Homeobox protein EMX1 (Emp...    33   0.20  
gi|6919956|sp|O15211|RGL2_HUMAN  Ral guanine nucleotide diss...    33   0.20  
gi|48428084|sp|Q8N693|ESX1L_HUMAN  Extraembryonic, spermatog...    33   0.20  
gi|29429203|sp|P54259|DRPLA_HUMAN  Atrophin-1 (Dentatorubral...    33   0.20  
gi|123402|sp|P09086|PO2F2_HUMAN  POU domain, class 2, transc...    33   0.26  
gi|547658|sp|Q03014|HHEX_HUMAN  Homeobox protein PRH (Hemato...    33   0.26  
gi|1174819|sp|P43699|TITF1_HUMAN  Thyroid transcription fact...    33   0.26  
gi|47117915|sp|Q9NY43|BARH2_HUMAN  BarH-like 2 homeobox protein    33   0.26  
gi|6016208|sp|O15522|NK28_HUMAN  Homeobox protein Nkx-2.8 (H...    33   0.26  
gi|8134640|sp|O14813|PHX2A_HUMAN  Paired mesoderm homeobox p...    33   0.26  
gi|27923817|sp|Q9H2Z4|NK24_HUMAN  Homeobox protein Nkx-2.4 (...    33   0.26  
gi|37999759|sp|Q96ST3|SIN3A_HUMAN  Paired amphipathic helix ...    33   0.34  
gi|6016205|sp|O95096|NKX22_HUMAN  Homeobox protein Nkx-2.2 (...    33   0.34  
gi|59803073|sp|O95104|SFR15_HUMAN  Splicing factor, arginine...    33   0.34  
gi|8134644|sp|Q99453|PHX2B_HUMAN  Paired mesoderm homeobox p...    32   0.45  
gi|23831508|sp|O43711|TLX3_HUMAN  T-cell leukemia homeobox p...    32   0.45  
gi|45477325|sp|Q96K62|ZN499_HUMAN  Zinc finger protein 499         32   0.59  
gi|3914034|sp|Q99583|MNT_HUMAN  MAX binding protein MNT (ROX...    32   0.59  
gi|8134564|sp|O60318|MCM3A_HUMAN  80 kda MCM3-associated pro...    32   0.59  
gi|20532396|sp|O43763|TLX2_HUMAN  T-cell leukemia homeobox p...    32   0.59  
gi|60416429|sp|O43516|WASIP_HUMAN  Wiskott-Aldrich syndrome ...    32   0.59  
gi|14194481|sp|Q9HBU1|BARX1_HUMAN  Homeobox protein BarH-like 1    32   0.59  
gi|51315800|sp|Q9UPA5|BSN_HUMAN  Bassoon protein (Zinc-finge...    32   0.59  
gi|17378648|sp|Q9GZZ0|HXD1_HUMAN  Homeobox protein Hox-D1          32   0.77  
gi|30173123|sp|Q9GZZ7|GFR4_HUMAN  GDNF family receptor alpha...    31   1.00  
gi|399982|sp|P31314|TLX1_HUMAN  T-cell leukemia homeobox pro...    31   1.00  
gi|59798967|sp|Q8TBP0|TBC16_HUMAN  TBC1 domain family member 16    31   1.00  
gi|13626112|sp|Q9H161|ALX4_HUMAN  Homeobox protein aristales...    31   1.00  
gi|6831676|sp|O15266|SHOX_HUMAN  Short stature homeobox prot...    31   1.3   
gi|59798974|sp|Q9HA65|TBC17_HUMAN  TBC1 domain family member 17    31   1.3   
gi|8928460|sp|O75962|TRIO_HUMAN  Triple functional domain pr...    31   1.3   
gi|1350911|sp|P28702|RXRB_HUMAN  Retinoic acid receptor RXR-...    30   1.7   
gi|115306|sp|P02461|CA13_HUMAN  Collagen alpha 1(III) chain ...    30   1.7   
gi|119533|sp|P04626|ERBB2_HUMAN  Receptor tyrosine-protein k...    30   1.7   
gi|50401326|sp|O60292|SIL3_HUMAN  Signal-induced proliferati...    30   1.7   
gi|37537987|sp|Q9BQY4|PEP2_HUMAN  Paired-like homeobox prote...    30   2.2   
gi|1168243|sp|P25100|ADA1D_HUMAN  Alpha-1D adrenergic recept...    30   2.2   
gi|547748|sp|P35527|K1C9_HUMAN  Keratin, type I cytoskeletal...    30   2.2   
gi|135298|sp|P05412|AP1_HUMAN  Transcription factor AP-1 (Ac...    30   2.2   
gi|20141631|sp|P18583|SON_HUMAN  SON protein (SON3) (Negativ...    30   2.2   
gi|1169653|sp|P98095|FBL2_HUMAN  Fibulin-2 precursor               30   2.2   
gi|55976571|sp|Q96L91|EP400_HUMAN  E1A binding protein p400 ...    30   2.2   
gi|56404979|sp|Q9ULJ6|ZIM10_HUMAN  Retinoic acid-induced pro...    30   2.9   
gi|462333|sp|Q00613|HSF1_HUMAN  Heat shock factor protein 1 ...    30   2.9   
gi|46577535|sp|Q96DT7|ZBT10_HUMAN  Zinc finger and BTB domai...    30   2.9   
gi|41688816|sp|Q96T58|MINT_HUMAN  Msx2-interacting protein (...    30   2.9   
gi|13431358|sp|Q9NZB2|CI10_HUMAN  Protein C9orf10                  30   2.9   
gi|51702148|sp|Q9H987|SYP2L_HUMAN  Synaptopodin 2-like protein     30   2.9   
gi|3121951|sp|Q14008|CTOG_HUMAN  CH-TOG protein (Colonic and...    30   2.9   
gi|20140764|sp|Q9C0J8|WD33_HUMAN  WD-repeat protein 33 (WD-r...    30   2.9   
gi|28201804|sp|Q14789|GOGB1_HUMAN  Golgi autoantigen, golgin...    29   3.8   
gi|17366642|sp|Q99704|DOK1_HUMAN  Docking protein 1 (p62(dok...    29   3.8   
gi|3183204|sp|Q15032|R3HD_HUMAN  R3H domain protein 1              29   3.8   
gi|27923810|sp|Q9UJM3|MIG6_HUMAN  Mitogen-inducible gene 6 p...    29   3.8   
gi|17433053|sp|Q9H461|FZD8_HUMAN  Frizzled 8 precursor (Friz...    29   3.8   
gi|8134421|sp|O43281|EFS_HUMAN  Embryonal Fyn-associated sub...    29   3.8   
gi|547752|sp|Q01546|K22O_HUMAN  Keratin, type II cytoskeleta...    29   3.8   
gi|1352066|sp|P48634|BAT2_HUMAN  Large proline-rich protein ...    29   3.8   
gi|32469743|sp|Q8N1I0|DOC4_HUMAN  Dedicator of cytokinesis p...    29   3.8   
gi|1351829|sp|P08913|ADA2A_HUMAN  Alpha-2A adrenergic recept...    29   5.0   
gi|6226623|sp|Q13227|GPS2_HUMAN  G protein pathway suppresso...    29   5.0   
gi|121082|sp|P23378|GCSP_HUMAN  Glycine dehydrogenase [decar...    29   5.0   
gi|48428096|sp|Q8TDT2|GP152_HUMAN  Probable G-protein couple...    29   5.0   
gi|20455262|sp|Q9BXA9|SALL3_HUMAN  Sal-like protein 3 (Zinc ...    29   5.0   
gi|57012959|sp|Q8TAQ2|SMRC2_HUMAN  SWI/SNF-related matrix-as...    28   6.5   
gi|56757653|sp|Q13029|PRDM2_HUMAN  PR-domain zinc finger pro...    28   6.5   
gi|119763|sp|P00748|FA12_HUMAN  Coagulation factor XII precu...    28   6.5   
gi|12643319|sp|O75665|OFD1_HUMAN  Oral-facial-digital syndro...    28   6.5   
gi|59798973|sp|Q9H0K1|SN1L2_HUMAN  Serine/threonine-protein ...    28   6.5   
gi|59800455|sp|Q9UPY6|WASF3_HUMAN  Wiskott-Aldrich syndrome ...    28   6.5   
gi|6015038|sp|Q13202|DUS8_HUMAN  Dual specificity protein ph...    28   6.5   
gi|14286145|sp|P43365|MAGC_HUMAN  Melanoma-associated antige...    28   6.5   
gi|46396456|sp|Q8IY33|MLK2_HUMAN  MICAL-like protein 2             28   6.5   
gi|47117582|sp|Q8IXZ2|ZNCC3_HUMAN  Zinc finger CCCH type dom...    28   6.5   
gi|46397857|sp|Q02818|NCB1_HUMAN  Nucleobindin 1 precursor (...    28   6.5   
gi|24212390|sp|Q9Y467|SALL2_HUMAN  Sal-like protein 2 (Zinc ...    28   8.5   
gi|25091115|sp|Q9UKM9|RALY_HUMAN  RNA-binding protein Raly (...    28   8.5   
gi|115351|sp|P05997|CO5A2_HUMAN  Collagen alpha 2(V) chain p...    28   8.5   
gi|2506535|sp|Q01851|PO4F1_HUMAN  POU domain, class 4, trans...    28   8.5   


Alignments

>gi|2828197|sp|P31271|HXA13_HUMAN   Homeobox protein Hox-A13 (Hox-1J)
          Length = 388

 Score =  320 bits (821), Expect = 6e-88
 Identities = 149/149 (100%), Positives = 149/149 (100%)

Query: 45  AAEEFSSRAKEFAFYHQGYAAGPYHHHQPMPGYLDMPVVPGLGGPGESRHEPLGLPMESY 104
           AAEEFSSRAKEFAFYHQGYAAGPYHHHQPMPGYLDMPVVPGLGGPGESRHEPLGLPMESY
Sbjct: 217 AAEEFSSRAKEFAFYHQGYAAGPYHHHQPMPGYLDMPVVPGLGGPGESRHEPLGLPMESY 276

Query: 105 QPWALPNGWNGQMYCPKEQAQPPHLWKSTLPDVVSHPSDASSYRRGRKKRVPYTKVQLKE 164
           QPWALPNGWNGQMYCPKEQAQPPHLWKSTLPDVVSHPSDASSYRRGRKKRVPYTKVQLKE
Sbjct: 277 QPWALPNGWNGQMYCPKEQAQPPHLWKSTLPDVVSHPSDASSYRRGRKKRVPYTKVQLKE 336

Query: 165 LEREYATNKFITKDKRRRISATTNLSERQ 193
           LEREYATNKFITKDKRRRISATTNLSERQ
Sbjct: 337 LEREYATNKFITKDKRRRISATTNLSERQ 365



>gi|20141539|sp|P31276|HXC13_HUMAN   Homeobox protein Hox-C13 (Hox-3G)
          Length = 330

 Score =  194 bits (494), Expect = 5e-50
 Identities = 99/151 (65%), Positives = 116/151 (76%), Gaps = 6/151 (3%)

Query: 43  ARAAEEFSSRAKEFAFYHQGYAAGPYHHHQPMPGYLDMPVVPGLGGPGESRHEPLGLPME 102
           A   ++ SSRAKEFAFY   +A+     +Q MPGYLD+ VVPG+ G  E RH+ L +P+E
Sbjct: 159 ALPGDDLSSRAKEFAFY-PSFASS----YQAMPGYLDVSVVPGISGHPEPRHDAL-IPVE 212

Query: 103 SYQPWALPNGWNGQMYCPKEQAQPPHLWKSTLPDVVSHPSDASSYRRGRKKRVPYTKVQL 162
            YQ WAL NGW+ Q+YC KEQ+Q  HLWKS  PDVV    + SSYRRGRKKRVPYTKVQL
Sbjct: 213 GYQHWALSNGWDSQVYCSKEQSQSAHLWKSPFPDVVPLQPEVSSYRRGRKKRVPYTKVQL 272

Query: 163 KELEREYATNKFITKDKRRRISATTNLSERQ 193
           KELE+EYA +KFITK+KRRRISATTNLSERQ
Sbjct: 273 KELEKEYAASKFITKEKRRRISATTNLSERQ 303



>gi|50403792|sp|Q92826|HXB13_HUMAN   Homeobox protein Hox-B13
          Length = 284

 Score =  170 bits (431), Expect = 1e-42
 Identities = 92/150 (61%), Positives = 105/150 (70%), Gaps = 7/150 (4%)

Query: 45  AAEEFSSRAKEFAFYHQGYAAGPYHHHQPMPGYLDMPVVPGLGGPGESRHEPLGLPMESY 104
           A EE+ SR  EFAFY  GY  G Y   QPM  YLD+ VV  LG PGE RH+ L LP++SY
Sbjct: 116 AGEEYPSRPTEFAFY-PGYP-GTY---QPMASYLDVSVVQTLGAPGEPRHDSL-LPVDSY 169

Query: 105 QPWALPNGWNGQMYCPKEQAQPPHLWKSTLPDVVS-HPSDASSYRRGRKKRVPYTKVQLK 163
           Q WAL  GWN QM C  EQ  P   WK+   D    HP DA ++RRGRKKR+PY+K QL+
Sbjct: 170 QSWALAGGWNSQMCCQGEQNPPGPFWKAAFADSSGQHPPDACAFRRGRKKRIPYSKGQLR 229

Query: 164 ELEREYATNKFITKDKRRRISATTNLSERQ 193
           ELEREYA NKFITKDKRR+ISA T+LSERQ
Sbjct: 230 ELEREYAANKFITKDKRRKISAATSLSERQ 259



>gi|2851475|sp|P35453|HXD13_HUMAN   Homeobox protein Hox-D13 (Hox-4I)
          Length = 335

 Score =  167 bits (423), Expect = 9e-42
 Identities = 92/158 (58%), Positives = 106/158 (67%), Gaps = 10/158 (6%)

Query: 37  TGSCAMARAAEEFSSRAKEFAFYHQGYAAGPYHHHQPMPGYLDMPVVPGLGGPGESRHEP 96
           +G  + +  A E  +RAKE +FY QGY + PY H   +PGY+DM       G GE RHE 
Sbjct: 163 SGLASSSVPANEVPARAKEVSFY-QGYTS-PYQH---VPGYIDMV---STFGSGEPRHEA 214

Query: 97  LGLPMESYQPWALPNGWNGQMYCPKEQAQPPHLWKSTLP-DVVSHPSDASSYRRGRKKRV 155
             + ME YQ W L NGWN Q+YC K+Q Q  H WKS+ P DV  +  D   YRRGRKKRV
Sbjct: 215 Y-ISMEGYQSWTLANGWNSQVYCTKDQPQGSHFWKSSFPGDVALNQPDMCVYRRGRKKRV 273

Query: 156 PYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQ 193
           PYTK+QLKELE EYA NKFI KDKRRRISA TNLSERQ
Sbjct: 274 PYTKLQLKELENEYAINKFINKDKRRRISAATNLSERQ 311



>gi|3287858|sp|O43248|HXC11_HUMAN   Homeobox protein Hox-C11
          Length = 304

 Score = 58.5 bits (140), Expect = 6e-09
 Identities = 39/117 (33%), Positives = 56/117 (47%), Gaps = 7/117 (5%)

Query: 79  DMPVVPGLGGPGESRHEPLGLPMESYQPWALPNGWNGQMYCPKEQAQPPHLWKSTLPDVV 138
           D P  P   G GE++ EP   P       A       +    +E   P      +   V 
Sbjct: 164 DPPAEPPCSGKGEAKGEPEAPPASGLASRAEAGA---EAEAEEENTNPSS--SGSAHSVA 218

Query: 139 SHPSD--ASSYRRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQ 193
             P+   A +  R RKKR PY+K Q++ELERE+  N +I K+KR ++S   NL++RQ
Sbjct: 219 KEPAKGAAPNAPRTRKKRCPYSKFQIRELEREFFFNVYINKEKRLQLSRMLNLTDRQ 275



>gi|12644203|sp|P31277|HXD11_HUMAN   Homeobox protein Hox-D11 (Hox-4F)
          Length = 338

 Score = 57.4 bits (137), Expect = 1e-08
 Identities = 27/52 (51%), Positives = 38/52 (73%)

Query: 142 SDASSYRRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQ 193
           S A + +R RKKR PYTK Q++ELERE+  N +I K+KR ++S   NL++RQ
Sbjct: 258 SSAVAPQRSRKKRCPYTKYQIRELEREFFFNVYINKEKRLQLSRMLNLTDRQ 309



 Score = 30.4 bits (67), Expect = 1.7
 Identities = 47/186 (25%), Positives = 57/186 (30%), Gaps = 49/186 (26%)

Query: 330 RAGGFVSGRGSADTAQNGGGKGPCWKGVPAATGGPGRVPVPEEXXXXXXXXXXXXXXXXX 389
           R GG   G GSA    +GGG        P   GG      P                   
Sbjct: 76  RGGG---GGGSAGGGSSGGG--------PGGGGGGAGGYAPYYAAAAAAAAAAAAAEEAA 124

Query: 390 XERERLQAQGKGRGWIG------VLGPAPPHTPFRAAS------------PSGHSASVQP 431
            +RE L   G+    +          P PPH P  AAS            P G     + 
Sbjct: 125 MQRELLPPAGRRPDVLFKAPEPVCAAPGPPHGPAGAASNFYSAVGRNGILPQGFDQFYEA 184

Query: 432 AELPCQPLPERLSQPQPFLRNSPLSPADT---------RGIQPC------QHPLGSALEE 476
           A  P    P+    P+   R+SP+  AD           G  PC        P G+A  E
Sbjct: 185 APGPPFAGPQPRRHPR---RHSPMGAADKGDPRTGAGGGGGSPCTKATPGSEPKGAA--E 239

Query: 477 DMGGSG 482
             GG G
Sbjct: 240 GSGGDG 245



>gi|13124744|sp|P31270|HXA11_HUMAN   Homeobox protein Hox-A11 (Hox-1I)
          Length = 313

 Score = 55.8 bits (133), Expect = 4e-08
 Identities = 34/77 (44%), Positives = 49/77 (63%), Gaps = 6/77 (7%)

Query: 121 KEQAQPPHLWKSTLPDVVS-HPSD---ASSYRRGRKKRVPYTKVQLKELEREYATNKFIT 176
           KE+ + P    S+ P+  S H  D    SS +R RKKR PYTK Q++ELERE+  + +I 
Sbjct: 210 KERRRRPE--SSSSPESSSGHTEDKAGGSSGQRTRKKRCPYTKYQIRELEREFFFSVYIN 267

Query: 177 KDKRRRISATTNLSERQ 193
           K+KR ++S   NL++RQ
Sbjct: 268 KEKRLQLSRMLNLTDRQ 284



>gi|20141507|sp|P17482|HXB9_HUMAN   Homeobox protein Hox-B9 (Hox-2E) (Hox-2.5)
          Length = 250

 Score = 55.8 bits (133), Expect = 4e-08
 Identities = 42/129 (32%), Positives = 59/129 (45%), Gaps = 17/129 (13%)

Query: 73  PMPGYLDMPVVPGLGGPGESRHEPLGLPMESYQPWA-----LPN---GWNGQMYCPKEQA 124
           P  G   +   P LG PGE   +  G P  S +  A     L N   G+     C   + 
Sbjct: 109 PGQGQAAVKAEPLLGAPGELLKQ--GTPEYSLETSAGREAVLSNQRPGYGDNKICEGSED 166

Query: 125 QPPHLWKSTLPDVVSHPSDASSYRRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRIS 184
           +         PD  +  ++    R  RKKR PYTK Q  ELE+E+  N ++T+D+R  ++
Sbjct: 167 KER-------PDQTNPSANWLHARSSRKKRCPYTKYQTLELEKEFLFNMYLTRDRRHEVA 219

Query: 185 ATTNLSERQ 193
              NLSERQ
Sbjct: 220 RLLNLSERQ 228



>gi|20141538|sp|P31275|HXC12_HUMAN   Homeobox protein Hox-C12 (Hox-3F)
          Length = 282

 Score = 55.1 bits (131), Expect = 6e-08
 Identities = 25/45 (55%), Positives = 34/45 (75%)

Query: 149 RGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQ 193
           R RKKR PY+K+QL ELE E+  N+FIT+ +RR +S   NLS++Q
Sbjct: 213 RSRKKRKPYSKLQLAELEGEFLVNEFITRQRRRELSDRLNLSDQQ 257



>gi|20141612|sp|Q9NYD6|HXC10_HUMAN   Homeobox protein Hox-C10
          Length = 342

 Score = 53.9 bits (128), Expect = 1e-07
 Identities = 24/46 (52%), Positives = 34/46 (73%)

Query: 148 RRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQ 193
           + GRKKR PYTK Q  ELE+E+  N ++T+++R  IS T NL++RQ
Sbjct: 266 KSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISKTINLTDRQ 311



>gi|13124743|sp|P31260|HXA10_HUMAN   Homeobox protein Hox-A10 (Hox-1H) (Hox-1.8) (PL)
          Length = 393

 Score = 53.5 bits (127), Expect = 2e-07
 Identities = 44/154 (28%), Positives = 68/154 (44%), Gaps = 29/154 (18%)

Query: 61  QGYAAGPYHHHQPMPGYLDMPVVPGLGGPGESRHEPLGLPMESYQPWALPNGWNGQMYCP 120
           Q   AGP+    P  G+ D+P     G    +R E     ++S  P  L  G  G     
Sbjct: 217 QQLGAGPFPAQPPGRGF-DLPPALASGSADAARKERA---LDSPPPPTLACGSGGGSQGD 272

Query: 121 KEQAQPPHLWKSTLPDVVSHPSDAS---------------------SYRRGRKKRVPYTK 159
           +E     H   S   ++   PS++S                     + + GRKKR PYTK
Sbjct: 273 EEA----HASSSAAEELSPAPSESSKASPEKDSLGNSKGENAANWLTAKSGRKKRCPYTK 328

Query: 160 VQLKELEREYATNKFITKDKRRRISATTNLSERQ 193
            Q  ELE+E+  N ++T+++R  IS + +L++RQ
Sbjct: 329 HQTLELEKEFLFNMYLTRERRLEISRSVHLTDRQ 362



>gi|20141537|sp|P31274|HXC9_HUMAN   Homeobox protein Hox-C9 (Hox-3B)
          Length = 260

 Score = 53.1 bits (126), Expect = 2e-07
 Identities = 38/111 (34%), Positives = 54/111 (48%), Gaps = 11/111 (9%)

Query: 88  GPGESRHEP---LGLPME--SYQPWALPNGWNGQMYCPKEQAQPPHLWKSTLPDVVSHPS 142
           GPGE R  P    G P E     P  LP+     +   K + +   L      D  +  +
Sbjct: 131 GPGEGRSYPDYMYGSPGELRDRAPQTLPSPEADALAGSKHKEEKADL------DPSNPVA 184

Query: 143 DASSYRRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQ 193
           +    R  RKKR PYTK Q  ELE+E+  N ++T+D+R  ++   NL+ERQ
Sbjct: 185 NWIHARSTRKKRCPYTKYQTLELEKEFLFNMYLTRDRRYEVARVLNLTERQ 235



>gi|123289|sp|P28358|HXD10_HUMAN   Homeobox protein Hox-D10 (Hox-4D) (Hox-4E)
          Length = 340

 Score = 52.8 bits (125), Expect = 3e-07
 Identities = 23/46 (50%), Positives = 34/46 (73%)

Query: 148 RRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQ 193
           + GRKKR PYTK Q  ELE+E+  N ++T+++R  IS + NL++RQ
Sbjct: 264 KSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISKSVNLTDRQ 309



>gi|1708540|sp|P52945|IPF1_HUMAN   Insulin promoter factor-1 (IPF-1) (Pancreas/duodenum homeobox-1)
           (PDX-1) (Islet/duodenum homeobox-1) (IDX-1)
           (Somatostatin transactivating factor-1) (STF-1) (Insulin
           upstream factor-1) (IUF-1) (Glucose-sensitive factor)
           (GSF)
          Length = 283

 Score = 52.8 bits (125), Expect = 3e-07
 Identities = 41/154 (26%), Positives = 65/154 (42%), Gaps = 24/154 (15%)

Query: 64  AAGPYHHHQPMPGYLDMPVVPGLGGPGESRHEPLGLPMESYQPWALPNGWNGQMYCPKEQ 123
           A    HHH  +P  L +P            H P G   E  +P  L      Q+  P  +
Sbjct: 78  AVAHLHHH--LPAQLALP------------HPPAGPFPEGAEPGVLEEPNRVQLPFPWMK 123

Query: 124 AQPPHLWKSTLPDVVSHPSDASSYRRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRI 183
           +   H WK       +  + A+     ++ R  YT+ QL ELE+E+  NK+I++ +R  +
Sbjct: 124 STKAHAWKGQW----AGGAYAAEPEENKRTRTAYTRAQLLELEKEFLFNKYISRPRRVEL 179

Query: 184 SATTNLSER------QPGAERWELSEGTESEPGT 211
           +   NL+ER      Q    +W+  E  +   GT
Sbjct: 180 AVMLNLTERHIKIWFQNRRMKWKKEEDKKRGGGT 213



>gi|123286|sp|P28356|HXD9_HUMAN   Homeobox protein Hox-D9 (Hox-4C) (Hox-5.2)
          Length = 342

 Score = 51.6 bits (122), Expect = 7e-07
 Identities = 23/46 (50%), Positives = 32/46 (69%)

Query: 148 RRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQ 193
           R  RKKR PYTK Q  ELE+E+  N ++T+D+R  ++   NL+ERQ
Sbjct: 273 RSTRKKRCPYTKYQTLELEKEFLFNMYLTRDRRYEVARILNLTERQ 318



>gi|12644227|sp|P35452|HXD12_HUMAN   Homeobox protein Hox-D12 (Hox-4H)
          Length = 275

 Score = 51.6 bits (122), Expect = 7e-07
 Identities = 23/43 (53%), Positives = 31/43 (72%)

Query: 151 RKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQ 193
           RKKR PYTK Q+ ELE E+  N+FI + KR+ +S   NLS++Q
Sbjct: 208 RKKRKPYTKQQIAELENEFLVNEFINRQKRKELSNRLNLSDQQ 250



>gi|6166219|sp|P31269|HXA9_HUMAN   Homeobox protein Hox-A9 (Hox-1G)
          Length = 272

 Score = 50.8 bits (120), Expect = 1e-06
 Identities = 23/46 (50%), Positives = 32/46 (69%)

Query: 148 RRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQ 193
           R  RKKR PYTK Q  ELE+E+  N ++T+D+R  ++   NL+ERQ
Sbjct: 204 RSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQ 249



>gi|20138327|sp|Q9BZM3|GSH2_HUMAN   Homeobox protein GSH-2
          Length = 304

 Score = 48.1 bits (113), Expect = 8e-06
 Identities = 22/52 (42%), Positives = 35/52 (67%)

Query: 142 SDASSYRRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQ 193
           SDAS    G++ R  +T  QL ELERE+++N ++++ +R  I+   NLSE+Q
Sbjct: 194 SDASQVPNGKRMRTAFTSTQLLELEREFSSNMYLSRLRRIEIATYLNLSEKQ 245



>gi|27923786|sp|Q9H4S2|GSHI_HUMAN   Homeobox protein GSH-1
          Length = 264

 Score = 47.4 bits (111), Expect = 1e-05
 Identities = 39/132 (29%), Positives = 64/132 (48%), Gaps = 18/132 (13%)

Query: 71  HQPMPGYLDMPVVPGLGGPGESR--HEPLGLPMESYQPWALPNGWNGQMYCPKEQAQPPH 128
           H P PG   +P++     P  S+  H PLG    +  P        G  + P   A    
Sbjct: 68  HGP-PGPPALPLLKASFPPFGSQYCHAPLGRQHSAVSP--------GVAHGPAAAAAAAA 118

Query: 129 LWKST--LPD-----VVSHPSDASSYRRGRKKRVPYTKVQLKELEREYATNKFITKDKRR 181
           L++++  LPD      +S  S ++     ++ R  +T  QL ELERE+A+N ++++ +R 
Sbjct: 119 LYQTSYPLPDPRQFHCISVDSSSNQLPSSKRMRTAFTSTQLLELEREFASNMYLSRLRRI 178

Query: 182 RISATTNLSERQ 193
            I+   NLSE+Q
Sbjct: 179 EIATYLNLSEKQ 190



>gi|123279|sp|P09017|HXC4_HUMAN   Homeobox protein Hox-C4 (Hox-3E) (CP19)
          Length = 264

 Score = 46.2 bits (108), Expect = 3e-05
 Identities = 50/175 (28%), Positives = 68/175 (38%), Gaps = 50/175 (28%)

Query: 58  FYHQGYAAGPYHHHQ-------PMPGYLDMPV-VPGLGGPGESR---------HEPLGLP 100
           +Y +   +G  HHHQ       P P Y +       L GPG SR         H P    
Sbjct: 36  YYGRTRESGFQHHHQELYPPPPPRPSYPERQYSCTSLQGPGNSRGHGPAQAGHHHP---- 91

Query: 101 MESYQPWALPNGWNGQMYCPKEQAQPPHLWKSTLPDVVSHPSDASS-------------- 146
            E  Q    P   +G    P   +  P       PD   HPS A+S              
Sbjct: 92  -EKSQSLCEPAPLSGASASP---SPAPPACSQPAPD---HPSSAASKQPIVYPWMKKIHV 144

Query: 147 ------YRRGRKKR--VPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQ 193
                 Y  G  KR    YT+ Q+ ELE+E+  N+++T+ +R  I+ +  LSERQ
Sbjct: 145 STVNPNYNGGEPKRSRAAYTRQQVLELEKEFHYNRYLTRRRRIEIAHSLCLSERQ 199



>gi|1709078|sp|P50221|MEOX1_HUMAN   Homeobox protein MOX-1 (Mesenchyme homeobox 1)
          Length = 254

 Score = 45.1 bits (105), Expect = 7e-05
 Identities = 24/73 (32%), Positives = 43/73 (58%), Gaps = 2/73 (2%)

Query: 149 RGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQPGAERWELSEGTESE 208
           + RK+R  +TK QL+ELE E+A + ++T+ +R  I+   +LSERQ   + W  +   + +
Sbjct: 170 KARKERTAFTKEQLRELEAEFAHHNYLTRLRRYEIAVNLDLSERQ--VKVWFQNRRMKWK 227

Query: 209 PGTRGYAVHPSGR 221
               G  + P+G+
Sbjct: 228 RVKGGQPISPNGQ 240



>gi|20141491|sp|P09016|HXD4_HUMAN   Homeobox protein Hox-D4 (Hox-4B) (Hox-5.1) (HHO.C13)
          Length = 255

 Score = 43.5 bits (101), Expect = 2e-04
 Identities = 40/132 (30%), Positives = 57/132 (43%), Gaps = 19/132 (14%)

Query: 73  PMPGYLDMPVVPG--LGGPGESRHEPLGLPMESYQPWALPNGWNGQMYCPKEQAQPPHLW 130
           P  G+   P  PG     PGE    P   P     P  LP     + Y   +  QPP   
Sbjct: 74  PARGHGQEPGGPGGHYAAPGEPCPAPPAPP-----PAPLPGA---RAYSQSDPKQPPSGT 125

Query: 131 KSTLPDVVS------HPSDASSYRRG---RKKRVPYTKVQLKELEREYATNKFITKDKRR 181
               P VV       H +  +    G   ++ R  YT+ Q+ ELE+E+  N+++T+ +R 
Sbjct: 126 ALKQPAVVYPWMKKVHVNSVNPNYTGGEPKRSRTAYTRQQVLELEKEFHFNRYLTRRRRI 185

Query: 182 RISATTNLSERQ 193
            I+ T  LSERQ
Sbjct: 186 EIAHTLCLSERQ 197



>gi|6093723|sp|O75364|PITX3_HUMAN   Pituitary homeobox 3 (Homeobox protein PITX3)
          Length = 302

 Score = 43.1 bits (100), Expect = 3e-04
 Identities = 39/146 (26%), Positives = 61/146 (41%), Gaps = 15/146 (10%)

Query: 85  GLGGPGESRHEPLGLPMESYQPWALP-NGWNGQMYCPKEQAQPPHLWKSTLPDVVSHPSD 143
           GL    E+R   L L         LP +G  GQ +   E+A       ++LP     P D
Sbjct: 4   GLLSEAEARSPALSLSDAGTPHPQLPEHGCKGQEHSDSEKAS------ASLPG--GSPED 55

Query: 144 ASSYRRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQPGA------E 197
            S  ++ R++R  +T  QL+ELE  +  N++     R  I+  TNL+E +          
Sbjct: 56  GSLKKKQRRQRTHFTSQQLQELEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNRRA 115

Query: 198 RWELSEGTESEPGTRGYAVHPSGRAV 223
           +W   E ++     +G    P G  V
Sbjct: 116 KWRKRERSQQAELCKGSFAAPLGGLV 141



>gi|6016292|sp|O43364|HXA2_HUMAN   Homeobox protein Hox-A2
          Length = 376

 Score = 43.1 bits (100), Expect = 3e-04
 Identities = 39/123 (31%), Positives = 55/123 (44%), Gaps = 18/123 (14%)

Query: 85  GLGG-----PGESRHEPLGLPMESYQPWALPNGWNGQMYCPKEQAQPPHLWKS-----TL 134
           G GG     P  SR  P+  P  + QP   P  W  +    K+ A  P    +     T 
Sbjct: 68  GAGGRPKPSPAGSRGSPV--PAGALQPPEYP--WMKEKKAAKKTALLPAAAAAATAAATG 123

Query: 135 PDVVSHPSDAS----SYRRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLS 190
           P  +SH         S    R+ R  YT  QL ELE+E+  NK++ + +R  I+A  +L+
Sbjct: 124 PACLSHKESLEIADGSGGGSRRLRTAYTNTQLLELEKEFHFNKYLCRPRRVEIAALLDLT 183

Query: 191 ERQ 193
           ERQ
Sbjct: 184 ERQ 186



>gi|123270|sp|P14652|HXB2_HUMAN   Homeobox protein Hox-B2 (Hox-2H) (Hox-2.8) (K8)
          Length = 356

 Score = 42.7 bits (99), Expect = 3e-04
 Identities = 27/80 (33%), Positives = 40/80 (50%), Gaps = 6/80 (7%)

Query: 120 PKEQAQPPHLWKSTLP-DVVSHPSDASSYRRG-----RKKRVPYTKVQLKELEREYATNK 173
           P + A  P    S +P   V  P+D            R+ R  YT  QL ELE+E+  NK
Sbjct: 107 PSQSATSPSPAASAVPASGVGSPADGLGLPEAGGGGARRLRTAYTNTQLLELEKEFHFNK 166

Query: 174 FITKDKRRRISATTNLSERQ 193
           ++ + +R  I+A  +L+ERQ
Sbjct: 167 YLCRPRRVEIAALLDLTERQ 186



>gi|1709079|sp|P50222|MEOX2_HUMAN   Homeobox protein MOX-2 (Mesenchyme homeobox 2) (Growth
           arrest-specific homeobox)
          Length = 303

 Score = 42.7 bits (99), Expect = 3e-04
 Identities = 44/185 (23%), Positives = 70/185 (37%), Gaps = 28/185 (15%)

Query: 37  TGSCAMARAAEEFSSRAKEFAFYHQGYAAGPYHHHQ-------------------PMPGY 77
           + SC +A    E    A +    H  +    +HHHQ                   P    
Sbjct: 45  SSSCIIAGYPNEEGMFASQHHRGHHHHHHHHHHHHQQQQHQALQTNWHLPQMSSPPSAAR 104

Query: 78  LDMPVVPGLGGPGESRHEPLGLPMESYQPWA--------LPNGWNGQMYCPKE-QAQPPH 128
             + + P  GGP E    P  L   S    +         P  +  Q   P E + +   
Sbjct: 105 HSLCLQPDSGGPPELGSSPPVLCSNSSSLGSSTPTGAACAPGDYGRQALSPAEAEKRSGG 164

Query: 129 LWKSTLPDVVSHPSDASSYRRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTN 188
             KS   D       +    + RK+R  +TK Q++ELE E+A + ++T+ +R  I+   +
Sbjct: 165 KRKSDSSDSQEGNYKSEVNSKPRKERTAFTKEQIRELEAEFAHHNYLTRLRRYEIAVNLD 224

Query: 189 LSERQ 193
           L+ERQ
Sbjct: 225 LTERQ 229



>gi|6166217|sp|Q00056|HXA4_HUMAN   Homeobox protein Hox-A4 (Hox-1D) (Hox-1.4)
          Length = 320

 Score = 42.0 bits (97), Expect = 6e-04
 Identities = 38/115 (33%), Positives = 53/115 (46%), Gaps = 19/115 (16%)

Query: 81  PVVPGLGGPGESRHEPLGLPMESYQPWALPNGWNGQMYCPKEQAQPPHLWKSTLPDVVSH 140
           P  PG+   G +   PL L  +S      P G  G     KE    P  W   +     +
Sbjct: 161 PATPGVPAGGSAPACPLLLADKS------PLGLKG-----KEPVVYP--WMKKIHVSAVN 207

Query: 141 PSDASSYRRGRKKR--VPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQ 193
           PS    Y  G  KR    YT+ Q+ ELE+E+  N+++T+ +R  I+ T  LSERQ
Sbjct: 208 PS----YNGGEPKRSRTAYTRQQVLELEKEFHFNRYLTRRRRIEIAHTLCLSERQ 258



>gi|13124737|sp|P13378|HXD8_HUMAN   Homeobox protein Hox-D8 (Hox-4E) (Hox-5.4)
          Length = 290

 Score = 41.6 bits (96), Expect = 7e-04
 Identities = 25/71 (35%), Positives = 39/71 (54%), Gaps = 6/71 (8%)

Query: 126 PPHLWKSTLPDVV---SHPSDASSYRRGRKKRVPYTKVQLKELEREYATNKFITKDKRRR 182
           P HL +S+ P  +     P  A   RRGR+    Y++ Q  ELE+E+  N ++T+ +R  
Sbjct: 173 PDHLNQSSSPSQMFPWMRPQAAPGRRRGRQT---YSRFQTLELEKEFLFNPYLTRKRRIE 229

Query: 183 ISATTNLSERQ 193
           +S    L+ERQ
Sbjct: 230 VSHALALTERQ 240



>gi|232262|sp|Q00444|HXC5_HUMAN   Homeobox protein Hox-C5 (Hox-3D) (CP11)
          Length = 222

 Score = 41.6 bits (96), Expect = 7e-04
 Identities = 22/68 (32%), Positives = 38/68 (55%), Gaps = 6/68 (8%)

Query: 126 PPHLWKSTLPDVVSHPSDASSYRRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISA 185
           PP ++       +SH +D      G++ R  YT+ Q  ELE+E+  N+++T+ +R  I+ 
Sbjct: 137 PPQIYPWMTKLHMSHETD------GKRSRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAN 190

Query: 186 TTNLSERQ 193
              L+ERQ
Sbjct: 191 NLCLNERQ 198



>gi|123255|sp|P09629|HXB7_HUMAN   Homeobox protein Hox-B7 (Hox-2C) (HHO.C1)
          Length = 217

 Score = 41.6 bits (96), Expect = 7e-04
 Identities = 35/128 (27%), Positives = 57/128 (44%), Gaps = 13/128 (10%)

Query: 98  GLPMESYQPWALPNGWNGQMYCPKEQAQPPHLWKSTLPDVVS------HPSDASSYRRGR 151
           GL   S+     P   N    CP + A+     +    D+ +      +P   SS    +
Sbjct: 79  GLEPSSFNMHCAPFEQNLSGVCPGDSAKAAGAKEQRDSDLAAESNFRIYPWMRSSGTDRK 138

Query: 152 KKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSER------QPGAERWELSEGT 205
           + R  YT+ Q  ELE+E+  N+++T+ +R  I+ T  L+ER      Q    +W+  E  
Sbjct: 139 RGRQTYTRYQTLELEKEFHYNRYLTRRRRIEIAHTLCLTERQIKIWFQNRRMKWK-KENK 197

Query: 206 ESEPGTRG 213
            + PGT G
Sbjct: 198 TAGPGTTG 205



>gi|52788238|sp|P20719|HXA5_HUMAN   Homeobox protein Hox-A5 (Hox-1C)
          Length = 270

 Score = 40.8 bits (94), Expect = 0.001
 Identities = 27/75 (36%), Positives = 40/75 (53%), Gaps = 5/75 (6%)

Query: 120 PKEQAQPP-HLWKSTLPDVVSHPSDASSYRRGRKKRVPYTKVQLKELEREYATNKFITKD 178
           P   AQP  + W   L   +SH  D      G++ R  YT+ Q  ELE+E+  N+++T+ 
Sbjct: 168 PAPPAQPQIYPWMRKLH--ISH--DNIGGPEGKRARTAYTRYQTLELEKEFHFNRYLTRR 223

Query: 179 KRRRISATTNLSERQ 193
           +R  I+    LSERQ
Sbjct: 224 RRIEIAHALCLSERQ 238



>gi|1345720|sp|P47902|CDX1_HUMAN   Homeobox protein CDX-1 (Caudal-type homeobox protein 1)
          Length = 265

 Score = 40.8 bits (94), Expect = 0.001
 Identities = 37/122 (30%), Positives = 53/122 (43%), Gaps = 19/122 (15%)

Query: 73  PMPGYLDMPVVPGLGGPGESRHEPLGLPMESYQPWALPNGWNGQMYCPKEQAQPPHLWKS 132
           P P +  +P  PG  GPG    +PLG P              G    P  Q   P+ W  
Sbjct: 94  PPPDFSPVPAPPG-PGPGLLA-QPLGGP--------------GTPSSPGAQRPTPYEWMR 137

Query: 133 TLPDVVSHPSDASSYRRGRKK-RVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSE 191
               V +     S   R + K RV YT  Q  ELE+E+  +++IT  ++  ++A   L+E
Sbjct: 138 R--SVAAGGGGGSGKTRTKDKYRVVYTDHQRLELEKEFHYSRYITIRRKSELAANLGLTE 195

Query: 192 RQ 193
           RQ
Sbjct: 196 RQ 197



>gi|123268|sp|P14651|HXB3_HUMAN   Homeobox protein Hox-B3 (Hox-2G) (Hox-2.7)
          Length = 431

 Score = 40.4 bits (93), Expect = 0.002
 Identities = 21/55 (38%), Positives = 33/55 (60%), Gaps = 4/55 (7%)

Query: 139 SHPSDASSYRRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQ 193
           S P  A+S    ++ R  YT  QL ELE+E+  N+++ + +R  ++   NLSERQ
Sbjct: 181 SPPGSAAS----KRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLSERQ 231



>gi|6016293|sp|O43365|HXA3_HUMAN   Homeobox protein Hox-A3 (Hox-1E)
          Length = 443

 Score = 40.4 bits (93), Expect = 0.002
 Identities = 21/55 (38%), Positives = 33/55 (60%), Gaps = 4/55 (7%)

Query: 139 SHPSDASSYRRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQ 193
           S P  ASS    ++ R  YT  QL ELE+E+  N+++ + +R  ++   NL+ERQ
Sbjct: 184 SPPGQASS----KRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQ 234



>gi|6166216|sp|P49639|HXA1_HUMAN   Homeobox protein Hox-A1 (Hox-1F)
          Length = 335

 Score = 40.4 bits (93), Expect = 0.002
 Identities = 42/162 (25%), Positives = 61/162 (37%), Gaps = 23/162 (14%)

Query: 40  CAMARAAEEFSSRAKEFAFYHQGYAAGP-----YHHHQPMPGYLDMPVVP---GLGGPGE 91
           CA A  +   SS   +   +HQGYA G      Y HH     +  + +      L     
Sbjct: 126 CAPAVYSGNLSSPMVQHHHHHQGYAGGAVGSPQYIHHSYGQEHQSLALATYNNSLSPLHA 185

Query: 92  SRHEPLGLPMESYQPWALPNGWNGQMYCPKEQAQPPHLWKSTLPDVVSHPSDASSYRRGR 151
           S  E    P       A    W       K +  PP   K      +  P+         
Sbjct: 186 SHQEACRSPASETSSPAQTFDWM------KVKRNPPKTGKVGEYGYLGQPNAV------- 232

Query: 152 KKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQ 193
             R  +T  QL ELE+E+  NK++T+ +R  I+A+  L+E Q
Sbjct: 233 --RTNFTTKQLTELEKEFHFNKYLTRARRVEIAASLQLNETQ 272



>gi|400000|sp|P09067|HXB5_HUMAN   Homeobox protein Hox-B5 (Hox-2A) (HHO.C10) (HU-1)
          Length = 269

 Score = 40.0 bits (92), Expect = 0.002
 Identities = 18/44 (40%), Positives = 29/44 (65%)

Query: 150 GRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQ 193
           G++ R  YT+ Q  ELE+E+  N+++T+ +R  I+    LSERQ
Sbjct: 194 GKRARTAYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLSERQ 237



>gi|20141506|sp|P17481|HXB8_HUMAN   Homeobox protein Hox-B8 (Hox-2D) (Hox-2.4)
          Length = 243

 Score = 39.7 bits (91), Expect = 0.003
 Identities = 20/53 (37%), Positives = 32/53 (60%), Gaps = 3/53 (5%)

Query: 141 PSDASSYRRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQ 193
           P  A+  RRGR+    Y++ Q  ELE+E+  N ++T+ +R  +S    L+ERQ
Sbjct: 140 PQAAAGRRRGRQT---YSRYQTLELEKEFLFNPYLTRKRRIEVSHALGLTERQ 189



>gi|3023467|sp|O14627|CDX4_HUMAN   Homeobox protein CDX-4 (Caudal-type homeobox protein 4)
          Length = 284

 Score = 39.3 bits (90), Expect = 0.004
 Identities = 23/74 (31%), Positives = 32/74 (43%), Gaps = 6/74 (8%)

Query: 120 PKEQAQPPHLWKSTLPDVVSHPSDASSYRRGRKKRVPYTKVQLKELEREYATNKFITKDK 179
           P      P+ W      V          R   K RV YT  Q  ELE+E+  N++IT  +
Sbjct: 149 PSRSRHSPYAWMRKTVQVTGKT------RTKEKYRVVYTDHQRLELEKEFHCNRYITIQR 202

Query: 180 RRRISATTNLSERQ 193
           +  ++    LSERQ
Sbjct: 203 KSELAVNLGLSERQ 216



>gi|17378385|sp|P31267|HXA6_HUMAN   Homeobox protein Hox-A6 (Hox-1B)
          Length = 233

 Score = 38.9 bits (89), Expect = 0.005
 Identities = 18/44 (40%), Positives = 29/44 (65%)

Query: 150 GRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQ 193
           GR+ R  YT+ Q  ELE+E+  N+++T+ +R  I+    L+ERQ
Sbjct: 155 GRRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIANALCLTERQ 198



>gi|13124738|sp|P17509|HXB6_HUMAN   Homeobox protein Hox-B6 (Hox-2B) (Hox-2.2) (HU-2)
          Length = 224

 Score = 38.9 bits (89), Expect = 0.005
 Identities = 18/44 (40%), Positives = 29/44 (65%)

Query: 150 GRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQ 193
           GR+ R  YT+ Q  ELE+E+  N+++T+ +R  I+    L+ERQ
Sbjct: 146 GRRGRQTYTRYQTLELEKEFHYNRYLTRRRRIEIAHALCLTERQ 189



>gi|547692|sp|P17483|HXB4_HUMAN   Homeobox protein Hox-B4 (Hox-2F) (Hox-2.6)
          Length = 251

 Score = 38.5 bits (88), Expect = 0.006
 Identities = 17/43 (39%), Positives = 29/43 (67%)

Query: 151 RKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQ 193
           ++ R  YT+ Q+ ELE+E+  N+++T+ +R  I+    LSERQ
Sbjct: 163 KRSRTAYTRQQVLELEKEFHYNRYLTRRRRVEIAHALCLSERQ 205



>gi|12644308|sp|P52951|GBX2_HUMAN   Homeobox protein GBX-2 (Gastrulation and brain-specific homeobox
           protein 2)
          Length = 348

 Score = 38.5 bits (88), Expect = 0.006
 Identities = 22/72 (30%), Positives = 39/72 (54%), Gaps = 1/72 (1%)

Query: 122 EQAQPPHLWKSTLPDVVSHPSDASSYRRGRKKRVPYTKVQLKELEREYATNKFITKDKRR 181
           ++  P H  + T P   +  S  S+  + R++R  +T  QL ELE+E+   K+++  +R 
Sbjct: 220 KEEDPGHALEETPPSSGAAGSTTST-GKNRRRRTAFTSEQLLELEKEFHCKKYLSLTERS 278

Query: 182 RISATTNLSERQ 193
           +I+    LSE Q
Sbjct: 279 QIAHALKLSEVQ 290



>gi|6166222|sp|P31249|HXD3_HUMAN   Homeobox protein Hox-D3 (Hox-4A)
          Length = 416

 Score = 37.7 bits (86), Expect = 0.011
 Identities = 16/43 (37%), Positives = 28/43 (65%)

Query: 151 RKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQ 193
           ++ R  YT  QL ELE+E+  N+++ + +R  ++   NL+ERQ
Sbjct: 179 KRVRTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQ 221



>gi|20141282|sp|Q99626|CDX2_HUMAN   Homeobox protein CDX-2 (Caudal-type homeobox protein 2) (CDX-3)
          Length = 313

 Score = 37.7 bits (86), Expect = 0.011
 Identities = 19/42 (45%), Positives = 28/42 (66%)

Query: 152 KKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQ 193
           K RV YT  Q  ELE+E+  +++IT  ++  ++AT  LSERQ
Sbjct: 188 KYRVVYTDHQRLELEKEFHYSRYITIRRKAELAATLGLSERQ 229



>gi|6174907|sp|Q99697|PITX2_HUMAN   Pituitary homeobox 2 (RIEG bicoid-related homeobox transcription
           factor) (Solurshin) (ALL1 responsive protein ARP1)
          Length = 317

 Score = 37.7 bits (86), Expect = 0.011
 Identities = 18/49 (36%), Positives = 28/49 (57%)

Query: 143 DASSYRRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSE 191
           D S  +R R++R  +T  QL+ELE  +  N++     R  I+  TNL+E
Sbjct: 78  DPSKKKRQRRQRTHFTSQQLQELEATFQRNRYPDMSTREEIAVWTNLTE 126



>gi|45644931|sp|P50219|HLXB9_HUMAN   Homeobox protein HB9
          Length = 403

 Score = 37.7 bits (86), Expect = 0.011
 Identities = 21/62 (33%), Positives = 34/62 (54%), Gaps = 2/62 (3%)

Query: 134 LPDVVSHPSDASSYRRG--RKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSE 191
           LP +    S A S   G  R+ R  +T  QL ELE ++  NK++++ KR  ++ +  L+E
Sbjct: 225 LPKMPDFNSQAQSNLLGKCRRPRTAFTSQQLLELEHQFKLNKYLSRPKRFEVATSLMLTE 284

Query: 192 RQ 193
            Q
Sbjct: 285 TQ 286



>gi|13124745|sp|P31273|HXC8_HUMAN   Homeobox protein Hox-C8 (Hox-3A)
          Length = 242

 Score = 37.4 bits (85), Expect = 0.014
 Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 6/68 (8%)

Query: 151 RKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSER------QPGAERWELSEG 204
           R  R  Y++ Q  ELE+E+  N ++T+ +R  +S    L+ER      Q    +W+    
Sbjct: 150 RSGRQTYSRYQTLELEKEFLFNPYLTRKRRIEVSHALGLTERQVKIWFQNRRMKWKKENN 209

Query: 205 TESEPGTR 212
            +  PG R
Sbjct: 210 KDKLPGAR 217



>gi|37999860|sp|O14686|MLL2_HUMAN   Myeloid/lymphoid or mixed-lineage leukemia protein 2 (ALL1-related
           protein)
          Length = 5262

 Score = 37.4 bits (85), Expect = 0.014
 Identities = 22/50 (44%), Positives = 25/50 (50%), Gaps = 2/50 (4%)

Query: 408 LGPAPPHTPFRAASPSGHSASVQPAELPCQPLPERLSQPQPFLRNSPLSP 457
           L P P  +P  +  P     S  P ELP  PLPE L   +P L  SPLSP
Sbjct: 449 LSPPPEESP-TSPPPEASRLSPPPEELPASPLPEALHLSRP-LEESPLSP 496



 Score = 31.2 bits (69), Expect = 1.00
 Identities = 26/84 (30%), Positives = 33/84 (39%), Gaps = 4/84 (4%)

Query: 412 PPHTPFRAASPSGHSASVQPAELPCQPLPE--RLSQPQPFLRNSPLSPADTRGIQPCQHP 469
           PP     +  P     S  P E P  P PE  RLS P P +      P ++    P   P
Sbjct: 620 PPEASRLSPPPEDSPMSPPPEESPMSPPPEVSRLS-PLPVVSRLSPPPEESPLSPPALSP 678

Query: 470 LGSALEEDMGGSGYAEQRTPPYRP 493
           LG  LE   G  G ++  +P   P
Sbjct: 679 LGE-LEYPFGAKGDSDPESPLAAP 701



>gi|123271|sp|P14653|HXB1_HUMAN   Homeobox protein Hox-B1 (Hox-2I)
          Length = 301

 Score = 37.0 bits (84), Expect = 0.018
 Identities = 40/142 (28%), Positives = 55/142 (38%), Gaps = 36/142 (25%)

Query: 62  GYAAGPYHHHQP----------MPGYLDMPVVPGLGGPGESRHEPLGLPMESYQPWALPN 111
           G   GPY    P           P Y D+          E +  P   P E   P A   
Sbjct: 131 GAGPGPYPPQHPPYGNEQTASFAPAYADLL--------SEDKETPC--PSEPNTPTARTF 180

Query: 112 GWNGQMYCPKEQAQPPHLWKSTLPDVVSHPSDASSYRRGRKKRVPYTKVQLKELEREYAT 171
            W       K +  PP   K + P + S PS           R  +T  QL ELE+E+  
Sbjct: 181 DWM------KVKRNPPKTAKVSEPGLGS-PSGL---------RTNFTTRQLTELEKEFHF 224

Query: 172 NKFITKDKRRRISATTNLSERQ 193
           NK++++ +R  I+AT  L+E Q
Sbjct: 225 NKYLSRARRVEIAATLELNETQ 246



>gi|13959687|sp|P35548|MSX2_HUMAN   Homeobox protein MSX-2 (Hox-8)
          Length = 267

 Score = 36.6 bits (83), Expect = 0.024
 Identities = 16/47 (34%), Positives = 29/47 (61%)

Query: 147 YRRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQ 193
           ++  RK R P+T  QL  LER++   ++++  +R   S++ NL+E Q
Sbjct: 139 HKTNRKPRTPFTTSQLLALERKFRQKQYLSIAERAEFSSSLNLTETQ 185



>gi|42559826|sp|Q8IWN7|RP1L1_HUMAN   Retinitis pigmentosa 1-like 1 protein
          Length = 2480

 Score = 36.6 bits (83), Expect = 0.024
 Identities = 44/188 (23%), Positives = 66/188 (35%), Gaps = 11/188 (5%)

Query: 337 GRGSADTAQNGGGKGPC-WKGVPAATGGPGRVPVPEEXXXXXXXXXXXXXXXXXXERERL 395
           G  S  +A  G  +G   W G P    G  R    ++                    + L
Sbjct: 530 GASSDSSASTGSHEGSSEWGGRPQGCPGKARAETSQQEASEGGDPASPALSLSSLRSDDL 589

Query: 396 QAQGKGRGWIGVLGPAPPHTPF---RAASPSGHSASVQPAELPCQPLPERLSQPQPFLRN 452
           QA+ +G+G     G A    P     + S     AS  P+        +R  + +    +
Sbjct: 590 QAETQGQGTEQATGAAVTREPLVLGLSCSWDSEGASSTPSTCTSSQQGQRRHRSRASAMS 649

Query: 453 SPLSPADTRGIQPCQHPLGSALEEDMGG---SGYAEQ--RTPPYRPFCRDRS-PGHQGKT 506
           SP SP   R + P  HP  S   +D      S   +Q  R P  R  C+D S P + G +
Sbjct: 650 SPSSPGLGR-VAPRGHPRHSHYRKDTHSPLDSSVTKQVPRPPERRRACQDGSVPRYSGSS 708

Query: 507 DLIKRGAA 514
              +  A+
Sbjct: 709 SSTRTQAS 716



>gi|2833256|sp|Q14774|HLX1_HUMAN   Homeobox protein HLX1 (Homeobox protein HB24)
          Length = 488

 Score = 36.2 bits (82), Expect = 0.031
 Identities = 21/78 (26%), Positives = 42/78 (53%), Gaps = 6/78 (7%)

Query: 120 PKEQAQPPHLWKSTLPD---VVSHPSDASSYRRGRK-KRVPYTKVQLKELEREYATNKFI 175
           P+   Q  H ++ T P    V++  +   +Y+R R   R  ++ +Q K LE+ +   K++
Sbjct: 244 PRNSVQ--HQFQDTFPGPYAVLTKDTMPQTYKRKRSWSRAVFSNLQRKGLEKRFEIQKYV 301

Query: 176 TKDKRRRISATTNLSERQ 193
           TK  R++++A   L++ Q
Sbjct: 302 TKPDRKQLAAMLGLTDAQ 319



>gi|29336920|sp|Q9BZE3|BARH1_HUMAN   BarH-like 1 homeobox protein (FKSG31 protein)
          Length = 327

 Score = 35.8 bits (81), Expect = 0.041
 Identities = 17/55 (30%), Positives = 30/55 (54%)

Query: 139 SHPSDASSYRRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQ 193
           S  S     ++ RK R  +T  QL +LER +   K+++   R  ++A+ NL++ Q
Sbjct: 167 SRDSPPVRLKKPRKARTAFTDHQLAQLERSFERQKYLSVQDRMELAASLNLTDTQ 221



>gi|13124451|sp|Q99575|POP1_HUMAN   Ribonucleases P/MRP protein subunit POP1 (hPOP1)
          Length = 1024

 Score = 35.8 bits (81), Expect = 0.041
 Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 2/58 (3%)

Query: 416 PFRAASPSGHSASVQPAELPCQPLPERLSQPQPFLRNSPLSPADTRGIQP--CQHPLG 471
           P  A+SP+G  + ++ +E+PC P+P++  QP   +  S   P +   +    CQ   G
Sbjct: 725 PSVASSPNGKESDLRRSEVPCAPMPKKTHQPSDEVGTSIEHPREAEEVMDAGCQESAG 782



>gi|3915721|sp|P31268|HXA7_HUMAN   Homeobox protein Hox-A7 (Hox-1A) (Hox 1.1)
          Length = 230

 Score = 35.8 bits (81), Expect = 0.041
 Identities = 19/52 (36%), Positives = 31/52 (59%), Gaps = 3/52 (5%)

Query: 142 SDASSYRRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQ 193
           S     +RGR+    YT+ Q  ELE+E+  N+++T+ +R  I+    L+ERQ
Sbjct: 125 SSGPDRKRGRQT---YTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQ 173



>gi|23503066|sp|P28360|MSX1_HUMAN   Homeobox protein MSX-1 (Hox-7)
          Length = 297

 Score = 35.4 bits (80), Expect = 0.053
 Identities = 15/47 (31%), Positives = 29/47 (61%)

Query: 147 YRRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQ 193
           ++  RK R P+T  QL  LER++   ++++  +R   S++ +L+E Q
Sbjct: 163 HKTNRKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQ 209



>gi|12230077|sp|Q14549|GBX1_HUMAN   Homeobox protein GBX-1 (Gastrulation and brain-specific homeobox
           protein 1)
          Length = 139

 Score = 35.4 bits (80), Expect = 0.053
 Identities = 16/45 (35%), Positives = 28/45 (62%)

Query: 149 RGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQ 193
           + R++R  +T  QL ELE+E+   K+++  +R +I+    LSE Q
Sbjct: 36  KSRRRRTAFTSEQLLELEKEFHCKKYLSLTERSQIAHALKLSEVQ 80



>gi|3024482|sp|P78337|PITX1_HUMAN   Pituitary homeobox 1 (Hindlimb expressed homeobox protein backfoot)
          Length = 314

 Score = 35.4 bits (80), Expect = 0.053
 Identities = 16/49 (32%), Positives = 28/49 (57%)

Query: 143 DASSYRRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSE 191
           D +  ++ R++R  +T  QL+ELE  +  N++     R  I+  TNL+E
Sbjct: 82  DPAKKKKQRRQRTHFTSQQLQELEATFQRNRYPDMSMREEIAVWTNLTE 130



>gi|20141493|sp|P09630|HXC6_HUMAN   Homeobox protein Hox-C6 (Hox-3C) (HHO.C8) (CP25)
          Length = 235

 Score = 34.3 bits (77), Expect = 0.12
 Identities = 16/43 (37%), Positives = 28/43 (65%)

Query: 151 RKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQ 193
           R+ R  Y++ Q  ELE+E+  N+++T+ +R  I+    L+ERQ
Sbjct: 142 RRGRQIYSRYQTLELEKEFHFNRYLTRRRRIEIANALCLTERQ 184



>gi|57015304|sp|Q04741|EMX1_HUMAN   Homeobox protein EMX1 (Empty spiracles homolog 1) (Empty
           spiracles-like protein 1)
          Length = 257

 Score = 33.5 bits (75), Expect = 0.20
 Identities = 33/143 (23%), Positives = 58/143 (40%), Gaps = 27/143 (18%)

Query: 81  PVVPGLGGPGESRHEPLGLPMESYQPWALPNGWNGQMYCPKEQAQPPHLWKSTLPDVVSH 140
           P+ P     G    +PL      + PW L N + G  +   +  Q   L           
Sbjct: 107 PLQPPHSFFGAQHRDPL-----HFYPWVLRNRFFGHRFQASDVPQDGLLLHGPFA----- 156

Query: 141 PSDASSYRRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSE--------- 191
                  R+ ++ R  ++  QL  LER +  N ++   +R++++ + +LSE         
Sbjct: 157 -------RKPKRIRTAFSPSQLLRLERAFEKNHYVVGAERKQLAGSLSLSETQVKVWFQN 209

Query: 192 RQPGAERWEL-SEGTESEPGTRG 213
           R+   +R +L  EG ESE   +G
Sbjct: 210 RRTKYKRQKLEEEGPESEQKKKG 232



>gi|6919956|sp|O15211|RGL2_HUMAN   Ral guanine nucleotide dissociation stimulator-like 2 (RalGDS-like
           factor) (RAS-associated protein RAB2L)
          Length = 777

 Score = 33.5 bits (75), Expect = 0.20
 Identities = 36/123 (29%), Positives = 44/123 (35%), Gaps = 35/123 (28%)

Query: 404 WIGVLGPAPPHTPFRAA---SPSGHSASVQPAELPCQPLPERLSQPQPF---------LR 451
           W  VLG     TP  +    S  G  A   PA     PL  RL+Q   +         L 
Sbjct: 533 WTEVLGSVGVPTPLVSCDRPSTGGDEAPTTPA-----PLLTRLAQHMKWPSVSSLDSALE 587

Query: 452 NSPL--SPADTRGIQP----------------CQHPLGSALEEDMGGSGYAEQRTPPYRP 493
           +SP   SPAD   + P                C  PL    EE  GG+GY  + + P   
Sbjct: 588 SSPSLHSPADPSHLSPPASSPRPSRGHRRSASCGSPLSGGAEEASGGTGYGGEGSGPGAS 647

Query: 494 FCR 496
            CR
Sbjct: 648 DCR 650



>gi|48428084|sp|Q8N693|ESX1L_HUMAN   Extraembryonic, spermatogenesis, homeobox 1-like protein
          Length = 406

 Score = 33.5 bits (75), Expect = 0.20
 Identities = 22/74 (29%), Positives = 37/74 (50%), Gaps = 4/74 (5%)

Query: 121 KEQAQPPHLWKSTLPDVVSHPSDASSYR---RGRKKRVPYTKVQLKELEREYATNKFITK 177
           +EQ +PP       P     P  A   +   R R++R  +T+ QL+ELE  +  +++   
Sbjct: 108 QEQEEPPQTTVEG-PQPAEGPQTAEGPQPPERKRRRRTAFTQFQLQELENFFDESQYPDV 166

Query: 178 DKRRRISATTNLSE 191
             R R++A  NL+E
Sbjct: 167 VARERLAARLNLTE 180



>gi|29429203|sp|P54259|DRPLA_HUMAN   Atrophin-1 (Dentatorubral-pallidoluysian atrophy protein)
          Length = 1185

 Score = 33.5 bits (75), Expect = 0.20
 Identities = 37/158 (23%), Positives = 47/158 (29%), Gaps = 13/158 (8%)

Query: 336 SGRGSADTAQNGGGKGPCWKGVPAATGGPGRVPVPEEXXXXXXXXXXXXXXXXXXERERL 395
           S   S+ T+Q   G  PC    P+ + GP   P P                         
Sbjct: 566 SSNSSSSTSQ---GSYPC--SHPSPSQGPQGAPYPFPPVPTVTTSSATLSTVIAT----- 615

Query: 396 QAQGKGRGWIGVLGPAPPHTPFRAASPSGHSASVQPAELPCQPLPERLSQPQPFLRNSPL 455
                  G+     P PP    RA SP  +  +  P   P  P   R   P  +   SP 
Sbjct: 616 -VASSPAGYKTASPPGPPPYGKRAPSPGAYKTATPPGYKPGSPPSFRTGTPPGYRGTSP- 673

Query: 456 SPADTRGIQPCQHPLGSALEEDMGGSGYAEQRTPPYRP 493
            PA     +P    +G       G SG      PP  P
Sbjct: 674 -PAGPGTFKPGSPTVGPGPLPPAGPSGLPSLPPPPAAP 710



 Score = 31.6 bits (70), Expect = 0.77
 Identities = 22/86 (25%), Positives = 31/86 (36%), Gaps = 7/86 (8%)

Query: 410 PAPPHTPFRAASPSGHSASVQPAELPCQPLPERLSQPQPFLRNSPLSPADTRGIQ--PCQ 467
           P     P  + +P+G+ A ++P        P     P P      L P  T G+   P  
Sbjct: 179 PEASFEPHPSVTPTGYHAPMEPPTSRMFQAPPGAPPPHP-----QLYPGGTGGVLSGPPM 233

Query: 468 HPLGSALEEDMGGSGYAEQRTPPYRP 493
            P G      +GG    +Q  PP  P
Sbjct: 234 GPKGGGAASSVGGPNGGKQHPPPTTP 259



>gi|123402|sp|P09086|PO2F2_HUMAN   POU domain, class 2, transcription factor 2 (Octamer-binding
           transcription factor 2) (Oct-2) (OTF-2)
           (Lymphoid-restricted immunoglobulin octamer binding
           protein NF-A2)
          Length = 479

 Score = 33.1 bits (74), Expect = 0.26
 Identities = 20/49 (40%), Positives = 23/49 (46%), Gaps = 2/49 (4%)

Query: 408 LGPAPPHTPFRAASPSGHSASVQPAELPCQPLPERLSQPQPFLRNSPLS 456
           + P  P T  +A  PSG SA   P  LP QP    L Q Q  L  S L+
Sbjct: 54  VSPTGPSTKIKAEDPSGDSAPAAP--LPPQPAQPHLPQAQLMLTGSQLA 100



>gi|547658|sp|Q03014|HHEX_HUMAN   Homeobox protein PRH (Hematopoietically expressed homeobox)
           (Homeobox protein HEX)
          Length = 270

 Score = 33.1 bits (74), Expect = 0.26
 Identities = 14/40 (35%), Positives = 27/40 (67%)

Query: 154 RVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQ 193
           +V ++  Q  ELE+++ T K+++  +R+R++    LSERQ
Sbjct: 141 QVRFSNDQTIELEKKFETQKYLSPPERKRLAKMLQLSERQ 180



>gi|1174819|sp|P43699|TITF1_HUMAN   Thyroid transcription factor 1 (Thyroid nuclear factor 1) (TTF-1)
           (Homeobox protein Nkx-2.1) (Homeobox protein NK-2
           homolog A)
          Length = 371

 Score = 33.1 bits (74), Expect = 0.26
 Identities = 18/61 (29%), Positives = 36/61 (59%), Gaps = 1/61 (1%)

Query: 133 TLPDVVSHPSDASSYRRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSER 192
           +L DV  + +   S  R RK+RV +++ Q+ ELER +   K+++  +R  +++  +L+  
Sbjct: 145 SLGDVSKNMAPLPSAPR-RKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPT 203

Query: 193 Q 193
           Q
Sbjct: 204 Q 204



>gi|47117915|sp|Q9NY43|BARH2_HUMAN   BarH-like 2 homeobox protein
          Length = 387

 Score = 33.1 bits (74), Expect = 0.26
 Identities = 14/46 (30%), Positives = 27/46 (58%)

Query: 148 RRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQ 193
           ++ RK R  ++  QL +LER +   K+++   R  ++A  NL++ Q
Sbjct: 230 KKPRKARTAFSDHQLNQLERSFERQKYLSVQDRMDLAAALNLTDTQ 275



>gi|6016208|sp|O15522|NK28_HUMAN   Homeobox protein Nkx-2.8 (Homeobox protein NK-2 homolog H)
          Length = 239

 Score = 33.1 bits (74), Expect = 0.26
 Identities = 14/52 (26%), Positives = 30/52 (57%)

Query: 142 SDASSYRRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQ 193
           S  S   + +K+RV ++K Q  ELER +   ++++  +R ++++   L+  Q
Sbjct: 76  SPGSDAEKRKKRRVLFSKAQTLELERRFRQQRYLSAPEREQLASLLRLTPTQ 127



>gi|8134640|sp|O14813|PHX2A_HUMAN   Paired mesoderm homeobox protein 2A (Paired-like homeobox 2A)
           (Aristaless homeobox protein homolog) (ARIX1 homeodomain
           protein)
          Length = 284

 Score = 33.1 bits (74), Expect = 0.26
 Identities = 25/88 (28%), Positives = 36/88 (40%), Gaps = 6/88 (6%)

Query: 141 PSDASSYRRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSER------QP 194
           PS     R+ R+ R  +T  QLKELER +A   +     R  ++   +L+E       Q 
Sbjct: 81  PSGLHEKRKQRRIRTTFTSAQLKELERVFAETHYPDIYTREELALKIDLTEARVQVWFQN 140

Query: 195 GAERWELSEGTESEPGTRGYAVHPSGRA 222
              ++   E   S  G  G A    G A
Sbjct: 141 RRAKFRKQERAASAKGAAGAAGAKKGEA 168



>gi|27923817|sp|Q9H2Z4|NK24_HUMAN   Homeobox protein Nkx-2.4 (Homeobox protein NKX2.4) (Homeobox
           protein NK-2 homolog D)
          Length = 353

 Score = 33.1 bits (74), Expect = 0.26
 Identities = 16/54 (29%), Positives = 34/54 (62%), Gaps = 1/54 (1%)

Query: 140 HPSDASSYRRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQ 193
           H + A++  R RK+RV +++ Q+ ELER +   K+++  +R  +++  +L+  Q
Sbjct: 180 HAAAAAAAPR-RKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQ 232



>gi|37999759|sp|Q96ST3|SIN3A_HUMAN   Paired amphipathic helix protein Sin3a
          Length = 1273

 Score = 32.7 bits (73), Expect = 0.34
 Identities = 27/92 (29%), Positives = 34/92 (36%), Gaps = 11/92 (11%)

Query: 415 TPFRAASPSGHSASVQPAELPCQPLPERLSQPQPFLRNSPLSPADTRGIQPCQHPLGSAL 474
           TP +      H    QP     QP P+  SQP      +P  PA      P   P   + 
Sbjct: 204 TPGQVHQIPTHGIQPQP-----QPPPQHPSQPSAQSAPAPAQPA------PQPPPAKVSK 252

Query: 475 EEDMGGSGYAEQRTPPYRPFCRDRSPGHQGKT 506
              +     A Q+TPP  P+   RSP  Q  T
Sbjct: 253 PSQLQAHTPASQQTPPLPPYASPRSPPVQPHT 284



>gi|6016205|sp|O95096|NKX22_HUMAN   Homeobox protein Nkx-2.2 (Homeobox protein NK-2 homolog B)
          Length = 273

 Score = 32.7 bits (73), Expect = 0.34
 Identities = 14/53 (26%), Positives = 28/53 (52%)

Query: 141 PSDASSYRRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQ 193
           P       + RK+RV ++K Q  ELER +   ++++  +R  +++   L+  Q
Sbjct: 119 PGGGGDAGKKRKRRVLFSKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQ 171



>gi|59803073|sp|O95104|SFR15_HUMAN   Splicing factor, arginine/serine-rich 15 (CTD-binding SR-like
           protein RA4)
          Length = 1147

 Score = 32.7 bits (73), Expect = 0.34
 Identities = 24/73 (32%), Positives = 29/73 (39%), Gaps = 16/73 (21%)

Query: 66  GPYHHHQPM--PGYLDMPVVPGLGGPG---------ESRHEPLGLPMESYQPWALPNGWN 114
           GP+  H P   PG +     PGLGGPG         + R +P   P +  QP A      
Sbjct: 907 GPFPPHGPFVRPGGM-----PGLGGPGPGPGGPEDRDGRQQPPQQPQQQPQPQAPQQPQQ 961

Query: 115 GQMYCPKEQAQPP 127
            Q   P    QPP
Sbjct: 962 QQQQQPPPSQQPP 974



 Score = 28.1 bits (61), Expect = 8.5
 Identities = 19/64 (29%), Positives = 23/64 (35%), Gaps = 15/64 (23%)

Query: 406 GVLGPAPPHTPF--------------RAASPSGHSASVQPAELP-CQPLPERLSQPQPFL 450
           G+ GP PPH PF                  P       QP + P  QP P+   QPQ   
Sbjct: 904 GMKGPFPPHGPFVRPGGMPGLGGPGPGPGGPEDRDGRQQPPQQPQQQPQPQAPQQPQQQQ 963

Query: 451 RNSP 454
           +  P
Sbjct: 964 QQQP 967



>gi|8134644|sp|Q99453|PHX2B_HUMAN   Paired mesoderm homeobox protein 2B (Paired-like homeobox 2B)
           (PHOX2B homeodomain protein) (Neuroblastoma Phox)
           (NBPhox)
          Length = 314

 Score = 32.3 bits (72), Expect = 0.45
 Identities = 22/70 (31%), Positives = 23/70 (32%), Gaps = 3/70 (4%)

Query: 344 AQNGGGKGPCWKGVPAAT--GGPGRVPVPEEXXXXXXXXXXXXXXXXXXERERLQAQ-GK 400
           A  GGG GP   G P A   GGPG  P                          L A  G 
Sbjct: 210 ANGGGGGGPSPAGAPGAAGPGGPGGEPGKGGAAAAAAAAAAAAAAAAAAAAGGLAAAGGP 269

Query: 401 GRGWIGVLGP 410
           G+GW    GP
Sbjct: 270 GQGWAPGPGP 279



 Score = 29.6 bits (65), Expect = 2.9
 Identities = 15/44 (34%), Positives = 24/44 (54%)

Query: 148 RRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSE 191
           R+ R+ R  +T  QLKELER +A   +     R  ++   +L+E
Sbjct: 96  RKQRRIRTTFTSAQLKELERVFAETHYPDIYTREELALKIDLTE 139



>gi|23831508|sp|O43711|TLX3_HUMAN   T-cell leukemia homeobox protein 3 (Homeobox protein Hox-11L2)
          Length = 291

 Score = 32.3 bits (72), Expect = 0.45
 Identities = 12/56 (21%), Positives = 31/56 (55%)

Query: 138 VSHPSDASSYRRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQ 193
           + HP    +  + +K R  +++VQ+ ELE+ +   K++   +R  ++ +  +++ Q
Sbjct: 154 IGHPYQNRTPPKRKKPRTSFSRVQICELEKRFHRQKYLASAERAALAKSLKMTDAQ 209



>gi|45477325|sp|Q96K62|ZN499_HUMAN   Zinc finger protein 499
          Length = 511

 Score = 32.0 bits (71), Expect = 0.59
 Identities = 28/87 (32%), Positives = 35/87 (40%), Gaps = 14/87 (16%)

Query: 419 AASPSGHSASV------QPA--ELPCQPLPERLSQPQ--PFLRNSPLSPADTRGIQPCQH 468
           AA P GH  +       QPA  +LP  P P +   P   P L  +P    D RG +  + 
Sbjct: 158 AARPPGHPGAAHSRKQRQPARLQLPAPPTPAKAEGPDADPSLSAAP----DDRGDEDDEE 213

Query: 469 PLGSALEEDMGGSGYAEQRTPPYRPFC 495
                  ED  G G  E + PP  P C
Sbjct: 214 SDDETDGEDGEGGGPGEGQAPPSFPDC 240



>gi|3914034|sp|Q99583|MNT_HUMAN   MAX binding protein MNT (ROX protein) (MYC antagonist MNT)
          Length = 582

 Score = 32.0 bits (71), Expect = 0.59
 Identities = 18/51 (35%), Positives = 22/51 (43%), Gaps = 5/51 (9%)

Query: 410 PAPPHTPFRAASPSGHSASVQPAELPCQPLPERLSQPQPFLRNSPLSPADT 460
           P PPH       P  HS ++ PA LP Q    +   P P     P +PA T
Sbjct: 377 PLPPHP-----HPHPHSVALPPAHLPVQQQQPQQKTPLPAPPPPPAAPAQT 422



>gi|8134564|sp|O60318|MCM3A_HUMAN   80 kda MCM3-associated protein (GANP protein)
          Length = 1980

 Score = 32.0 bits (71), Expect = 0.59
 Identities = 26/83 (31%), Positives = 31/83 (37%), Gaps = 2/83 (2%)

Query: 413 PHTPFRAASPSGHSASVQPA-ELPCQPLPERLSQPQPFLRNSPLSPADTRGIQPCQHPLG 471
           P  PF    PS  SAS      LP +P P R  QP  F +NS LS   +   Q    P  
Sbjct: 3   PTNPFSGQQPSAFSASSSNVGTLPSKP-PFRFGQPSLFGQNSTLSGKSSGFSQVSSFPAS 61

Query: 472 SALEEDMGGSGYAEQRTPPYRPF 494
           S +            +T    PF
Sbjct: 62  SGVSHSSSVQTLGFTQTSSVGPF 84



>gi|20532396|sp|O43763|TLX2_HUMAN   T-cell leukemia homeobox protein 2 (Homeobox protein Hox-11L1)
           (Neural crest homeobox protein)
          Length = 284

 Score = 32.0 bits (71), Expect = 0.59
 Identities = 34/174 (19%), Positives = 60/174 (34%), Gaps = 24/174 (13%)

Query: 38  GSCAMARAAEEFSSRAKEFAFYHQGYAAGPYHHHQPMPG--------------YLDMPVV 83
           G   + R  +           YH     GP     P+PG              +  +PV 
Sbjct: 33  GGLGLGRGGQGHGENGAFSGGYHGASGYGPAGSLAPLPGSSGVGPGGVIRVPAHRPLPVP 92

Query: 84  PGLGG----PGESRHEPLGLPMESYQPWALPNGWNGQMYCPKEQAQPPHLWKSTLPDVVS 139
           P  GG    PG S     G       PW      +G+ +           +  T    + 
Sbjct: 93  PPAGGAPAVPGPSGLGGAGGLAGLTFPWMD----SGRRFAKDRLTAALSPFSGTRR--IG 146

Query: 140 HPSDASSYRRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQ 193
           HP    +  + +K R  +++ Q+ ELER +   K++   +R  ++    +++ Q
Sbjct: 147 HPYQNRTPPKRKKPRTSFSRSQVLELERRFLRQKYLASAERAALAKALRMTDAQ 200



>gi|60416429|sp|O43516|WASIP_HUMAN   Wiskott-Aldrich syndrome protein interacting protein (WASP
           interacting protein) (PRPL-2 protein)
          Length = 503

 Score = 32.0 bits (71), Expect = 0.59
 Identities = 42/155 (27%), Positives = 53/155 (34%), Gaps = 20/155 (12%)

Query: 324 KKGGESRAGGFVSGRGSADTAQNGGGKGPCWKGVPAATGGPGRVPVPEEXXXXXXXXXXX 383
           K  G    GG   G G       GGG G    G P   GG  +  +P+            
Sbjct: 63  KGAGAGGGGGGFGGGGGFGGGGGGGGGGSFGGGGPPGLGGLFQAGMPK------LRSTAN 116

Query: 384 XXXXXXXERERLQAQGKGRGWIGVLGPAPPHTPFRAASPS-GHSASVQPAELPCQPLPER 442
                   R  L   G GR        +PP  P R   PS GH +       P +P   R
Sbjct: 117 RDNDSGGSRPPLLPPG-GRS-TSAKPFSPPSGPGRFPVPSPGHRSG------PPEPQRNR 168

Query: 443 LSQPQPFLRNSPLS-----PADTRGIQPCQHPLGS 472
           +  P+P + + P S     P+  R IQ   H  GS
Sbjct: 169 MPPPRPDVGSKPDSIPPPVPSTPRPIQSSLHNRGS 203



>gi|14194481|sp|Q9HBU1|BARX1_HUMAN   Homeobox protein BarH-like 1
          Length = 225

 Score = 32.0 bits (71), Expect = 0.59
 Identities = 13/46 (28%), Positives = 28/46 (60%)

Query: 148 RRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQ 193
           ++GR+ R  +T++QL  LE+ +   K+++   R  ++ +  LS+ Q
Sbjct: 111 KKGRRSRTVFTELQLMGLEKRFEKQKYLSTPDRIDLAESLGLSQLQ 156



>gi|51315800|sp|Q9UPA5|BSN_HUMAN   Bassoon protein (Zinc-finger protein 231)
          Length = 3926

 Score = 32.0 bits (71), Expect = 0.59
 Identities = 27/99 (27%), Positives = 44/99 (44%), Gaps = 5/99 (5%)

Query: 411 APPHTPFRAASPSGHSASVQPAELPCQPLPERLSQPQPFLRNSPLSPADTRGIQPCQ--H 468
           +P   P RA+ PS   +SVQ  +       E + +P P    +P +P    G++  +   
Sbjct: 587 SPQAKPLRASEPSKTPSSVQEKKTRVPTKAEPMPKPPPETTPTPATPKVKSGVRRAEPAT 646

Query: 469 PLGSALEEDMGGSGYAEQRTPPYRPFCRDRSPGHQGKTD 507
           P+  A+ E   G G AE      +P+ +D S   Q  +D
Sbjct: 647 PVVKAVPEAPKG-GEAEDLVG--KPYSQDASRSPQSLSD 682



>gi|17378648|sp|Q9GZZ0|HXD1_HUMAN   Homeobox protein Hox-D1
          Length = 328

 Score = 31.6 bits (70), Expect = 0.77
 Identities = 14/40 (35%), Positives = 26/40 (65%)

Query: 154 RVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQ 193
           R  ++  QL ELE+E+  NK++T+ +R  I+   +L++ Q
Sbjct: 233 RTNFSTKQLTELEKEFHFNKYLTRARRIEIANCLHLNDTQ 272



>gi|30173123|sp|Q9GZZ7|GFR4_HUMAN   GDNF family receptor alpha 4 precursor (GFR-alpha 4) (GFRalpha4)
           (Persephin receptor)
          Length = 299

 Score = 31.2 bits (69), Expect = 1.00
 Identities = 24/69 (34%), Positives = 30/69 (43%), Gaps = 9/69 (13%)

Query: 397 AQGKGRGWIGVLGPAPPHTPFRAASPSGHSASVQPAEL--------PCQPLPERLSQPQP 448
           A G  RGW   L PA    P   ASP G S  V P+          P +PLP RL  P+ 
Sbjct: 136 AAGPWRGWGRGLSPAH-RPPAAQASPPGLSGLVHPSAQRPRRLPAGPGRPLPARLRGPRG 194

Query: 449 FLRNSPLSP 457
               + ++P
Sbjct: 195 VPAGTAVTP 203



>gi|399982|sp|P31314|TLX1_HUMAN   T-cell leukemia homeobox protein 1 (Homeobox protein Hox-11) (TCL-3
           proto-oncogene)
          Length = 330

 Score = 31.2 bits (69), Expect = 1.00
 Identities = 12/54 (22%), Positives = 29/54 (53%)

Query: 140 HPSDASSYRRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQ 193
           HP    +  + +K R  +T++Q+ ELE+ +   K++   +R  ++    +++ Q
Sbjct: 191 HPYQNRTPPKKKKPRTSFTRLQICELEKRFHRQKYLASAERAALAKALKMTDAQ 244



>gi|59798967|sp|Q8TBP0|TBC16_HUMAN   TBC1 domain family member 16
          Length = 767

 Score = 31.2 bits (69), Expect = 1.00
 Identities = 37/125 (29%), Positives = 48/125 (38%), Gaps = 18/125 (14%)

Query: 391 ERERLQAQGKGRGWIGVLGPAPPHTPFRAASPSGHSASVQPAELP---CQPLPE------ 441
           E E   AQG     +GV G  P   P  A SPSG  ++V P ++     +P PE      
Sbjct: 159 EDEEKLAQG-----LGVDGAQPASQP--ACSPSGILSTVSPQDVTEEGREPRPEAGEEDG 211

Query: 442 --RLSQPQPFLRNSPLSPADTRGIQPCQHPLGSALEEDMGGSGYAEQRTPPYRPFCRDRS 499
              LS       +S  S +DT     C  P+ +AL E  G        +PP       R 
Sbjct: 212 SLELSAEGVSRDSSFDSDSDTFSSPFCLSPISAALAESRGSVFLESDSSPPSSSDAGLRF 271

Query: 500 PGHQG 504
           P   G
Sbjct: 272 PDSNG 276



>gi|13626112|sp|Q9H161|ALX4_HUMAN   Homeobox protein aristaless-like 4
          Length = 411

 Score = 31.2 bits (69), Expect = 1.00
 Identities = 16/60 (26%), Positives = 30/60 (50%)

Query: 132 STLPDVVSHPSDASSYRRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSE 191
           S LP  +      S+  + R+ R  +T  QL+ELE+ +    +     R +++  T+L+E
Sbjct: 196 SDLPSPLEKADSESNKGKKRRNRTTFTSYQLEELEKVFQKTHYPDVYAREQLAMRTDLTE 255



>gi|6831676|sp|O15266|SHOX_HUMAN   Short stature homeobox protein (Short stature homeobox containing
           protein) (Pseudoautosomal homeobox containing osteogenic
           protein)
          Length = 292

 Score = 30.8 bits (68), Expect = 1.3
 Identities = 19/61 (31%), Positives = 26/61 (42%)

Query: 131 KSTLPDVVSHPSDASSYRRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLS 190
           K    DV S   D  +  + R+ R  +T  QL ELER +    +     R  +S    LS
Sbjct: 98  KEKREDVKSEDEDGQTKLKQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLS 157

Query: 191 E 191
           E
Sbjct: 158 E 158



>gi|59798974|sp|Q9HA65|TBC17_HUMAN   TBC1 domain family member 17
          Length = 648

 Score = 30.8 bits (68), Expect = 1.3
 Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 4/44 (9%)

Query: 405 IGVLGPAPPHTPFRAASPSGHSASVQPAELPCQPLPERLSQPQP 448
           +G+  PA PH+P   ASP      + P   P  P P   + PQP
Sbjct: 592 LGLAPPAEPHSPSPTASP----LPLSPTRAPPTPPPSTDTAPQP 631



>gi|8928460|sp|O75962|TRIO_HUMAN   Triple functional domain protein (PTPRF interacting protein)
          Length = 3038

 Score = 30.8 bits (68), Expect = 1.3
 Identities = 40/160 (25%), Positives = 52/160 (32%), Gaps = 20/160 (12%)

Query: 326  GGESRAGGFVSGRGSADTAQNGGGKGPCWKGVPAATGG--------PGRVPVPEEXXXXX 377
            GG   +GG   G GS       GG G    G P++ GG        P R+P P       
Sbjct: 2235 GGGGGSGGSGGGGGSGGGGAPSGGSGH--SGGPSSCGGAPSTSRSRPSRIPQPVRHHPPV 2292

Query: 378  XXXXXXXXXXXXXERERLQAQGKGRGWIGVLGPAPPHTPFRAASPSGHSASVQPAELPCQ 437
                         +       G      G    A P  P R   P G  A  + +E   +
Sbjct: 2293 LVSSAASSQAEADKMSGTSTPGPSLPPPGAAPEAGPSAPSR--RPPG--ADAEGSEREAE 2348

Query: 438  PLPER--LSQPQPFLRN----SPLSPADTRGIQPCQHPLG 471
            P+P+   L  P+    N    SP +PA          PLG
Sbjct: 2349 PIPKMKVLESPRKGAANASGSSPDAPAKDARASLGTLPLG 2388



>gi|1350911|sp|P28702|RXRB_HUMAN   Retinoic acid receptor RXR-beta (Retinoid X receptor beta)
          Length = 533

 Score = 30.4 bits (67), Expect = 1.7
 Identities = 28/95 (29%), Positives = 36/95 (37%), Gaps = 16/95 (16%)

Query: 406 GVLGPAPPHTPFRAASPSGHSASVQPAELPCQPLPERLSQPQPFLRNSPLSPADTRGIQP 465
           GV  P+PP  P   ++      S  P   P  P P  L  P P + +S  SP    G+ P
Sbjct: 94  GVPPPSPPGPPLPPSTAPSLGGSGAPPPPPMPPPP--LGSPFPVISSSMGSP----GLPP 147

Query: 466 CQHP----------LGSALEEDMGGSGYAEQRTPP 490
              P          + S +    GGSG  E   PP
Sbjct: 148 PAPPGFSGPVSSPQINSTVSLPGGGSGPPEDVKPP 182



>gi|115306|sp|P02461|CA13_HUMAN   Collagen alpha 1(III) chain precursor
          Length = 1466

 Score = 30.4 bits (67), Expect = 1.7
 Identities = 31/114 (27%), Positives = 43/114 (37%), Gaps = 12/114 (10%)

Query: 402  RGWIGVLGPAPPHTPFRAASP------SGHSASVQPAELPCQPLPERLSQPQPFLRNSPL 455
            +G IG  GPA P  P   + P      SGH   + P   P     ER S+  P     P 
Sbjct: 1127 QGAIGSPGPAGPRGPVGPSGPPGKDGTSGHPGPIGPPG-PRGNRGERGSEGSPGHPGQPG 1185

Query: 456  SPADTRGIQPCQHPLGSALEEDMGGSGYAEQRTPPYRPFCRDRSPGHQGKTDLI 509
             P       PC   +G+A    +GG     ++   + P+  D     +  TD I
Sbjct: 1186 PPGPPGAPGPCCGGVGAAAIAGIGG-----EKAGGFAPYYGDEPMDFKINTDEI 1234



 Score = 30.0 bits (66), Expect = 2.2
 Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 1/40 (2%)

Query: 327 GESRAGGFVSGRGSA-DTAQNGGGKGPCWKGVPAATGGPG 365
           GE  A G    RG+A +  ++G   GP  +G+P + GGPG
Sbjct: 507 GERGAPGPAGPRGAAGEPGRDGVPGGPGMRGMPGSPGGPG 546



>gi|119533|sp|P04626|ERBB2_HUMAN   Receptor tyrosine-protein kinase erbB-2 precursor (p185erbB2)
            (C-erbB-2) (NEU proto-oncogene) (Tyrosine kinase-type
            cell surface receptor HER2) (MLN 19)
          Length = 1255

 Score = 30.4 bits (67), Expect = 1.7
 Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 4/44 (9%)

Query: 432  AELPCQPLPERLSQPQPFLRNSPLSPADTRGIQPCQHPLGSALE 475
            A L C P PE ++QP   +R  P SP +  G  P   P G+ LE
Sbjct: 1129 APLTCSPQPEYVNQPD--VRPQPPSPRE--GPLPAARPAGATLE 1168



>gi|50401326|sp|O60292|SIL3_HUMAN   Signal-induced proliferation-associated 1 like protein 3
          Length = 1368

 Score = 30.4 bits (67), Expect = 1.7
 Identities = 24/84 (28%), Positives = 33/84 (39%), Gaps = 14/84 (16%)

Query: 412  PPHTPFRAASPSGHSASVQPAELPCQPLPERLSQPQPFLRNSPLSPADTRGIQPC--QHP 469
            PP  P    S  G+ A V        P P +L+QP PF  ++ + P      QP   +HP
Sbjct: 985  PPRQPSDMGSRVGYPAQVYKTASAETPRPSQLAQPSPFQLSASV-PKSFFSKQPVRNKHP 1043

Query: 470  LGSALEEDMGGSGYAEQRTPPYRP 493
                       +G+     PP RP
Sbjct: 1044 -----------TGWKRTEEPPPRP 1056



>gi|37537987|sp|Q9BQY4|PEP2_HUMAN   Paired-like homeobox protein PEPP-2 (Testis homeobox gene 1)
          Length = 288

 Score = 30.0 bits (66), Expect = 2.2
 Identities = 13/35 (37%), Positives = 25/35 (71%)

Query: 157 YTKVQLKELEREYATNKFITKDKRRRISATTNLSE 191
           +T +QL+ELER +   +F ++  RRR++ + N++E
Sbjct: 141 FTPLQLQELERIFQREQFPSEFLRRRLARSMNVTE 175



>gi|1168243|sp|P25100|ADA1D_HUMAN   Alpha-1D adrenergic receptor (Alpha 1D-adrenoceptor) (Alpha
           1D-adrenoreceptor) (Alpha-1A adrenergic receptor) (Alpha
           adrenergic receptor 1a)
          Length = 572

 Score = 30.0 bits (66), Expect = 2.2
 Identities = 15/40 (37%), Positives = 18/40 (45%)

Query: 328 ESRAGGFVSGRGSADTAQNGGGKGPCWKGVPAATGGPGRV 367
           +S AGG  +G G          +GP   GVP   GG G V
Sbjct: 17  DSSAGGSSAGGGGGSAGGAAPSEGPAVGGVPGGAGGGGGV 56



>gi|547748|sp|P35527|K1C9_HUMAN   Keratin, type I cytoskeletal 9 (Cytokeratin 9) (K9) (CK 9)
          Length = 622

 Score = 30.0 bits (66), Expect = 2.2
 Identities = 16/40 (40%), Positives = 19/40 (47%)

Query: 326 GGESRAGGFVSGRGSADTAQNGGGKGPCWKGVPAATGGPG 365
           GG S +GGF  G G       GGG G  + G+    GG G
Sbjct: 102 GGYSSSGGFGGGFGGGSGGGFGGGYGSGFGGLGGFGGGAG 141



>gi|135298|sp|P05412|AP1_HUMAN   Transcription factor AP-1 (Activator protein 1) (AP1)
           (Proto-oncogene c-jun) (V-jun avian sarcoma virus 17
           oncogene homolog) (p39)
          Length = 331

 Score = 30.0 bits (66), Expect = 2.2
 Identities = 30/131 (22%), Positives = 52/131 (39%), Gaps = 25/131 (19%)

Query: 85  GLGGPGESRHE--PLGLPMESYQPWALPNGWNGQMYC---------PKEQAQPPHLWKST 133
           G GG   S H   P+   + ++ P AL +G     Y          P++Q QPPH     
Sbjct: 155 GSGGFSASLHSEPPVYANLSNFNPGALSSGGGAPSYGAAGLAFPAQPQQQQQPPHHLPQQ 214

Query: 134 LPDVVSHP------SDASSYRRGRKKRVPYTKVQLKELEREYATNKFI------TKDKRR 181
           +P  V HP       +  +      +  P + + ++  ER  A  K +      +K ++R
Sbjct: 215 MP--VQHPRLQALKEEPQTVPEMPGETPPLSPIDMESQERIKAERKRMRNRIAASKCRKR 272

Query: 182 RISATTNLSER 192
           ++     L E+
Sbjct: 273 KLERIARLEEK 283



>gi|20141631|sp|P18583|SON_HUMAN   SON protein (SON3) (Negative regulatory element-binding protein)
            (NRE-binding protein) (DBP-5) (Bax antagonist selected in
            saccharomyces 1) (BASS1)
          Length = 2426

 Score = 30.0 bits (66), Expect = 2.2
 Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 5/52 (9%)

Query: 410  PAPPHTPFRA-ASPSGHSA----SVQPAELPCQPLPERLSQPQPFLRNSPLS 456
            P PP  P    A P+  SA    +  P E+P  P  E +SQP+P +  S +S
Sbjct: 1170 PLPPEEPPEGPALPTEQSALTAENTWPTEVPSLPSEESVSQPEPPVSQSEIS 1221



>gi|1169653|sp|P98095|FBL2_HUMAN   Fibulin-2 precursor
          Length = 1184

 Score = 30.0 bits (66), Expect = 2.2
 Identities = 34/127 (26%), Positives = 44/127 (34%), Gaps = 20/127 (15%)

Query: 326 GGESRAGGFVSGRGSADTAQNGGG------KGPCWKGV---PAATGGPGRVPVPEEXXXX 376
           GGE +AG   +G G    A  GG       + P W  V   P A    G  P P +    
Sbjct: 213 GGEVQAGAVQAGAGGPPAALGGGSQPLSTIQAPPWPAVLPRPTAAAALG-PPAPVQAKAR 271

Query: 377 XXXXXXXXXXXXXXERERLQ-----AQGKGRGWIGV-----LGPAPPHTPFRAASPSGHS 426
                         ERE +      A G  RG  G+      GP+ P    RA + +   
Sbjct: 272 RVTEDSEEEEEEEEEREEMAVTEQLAAGGHRGLDGLPTTAPAGPSLPIQEERAEAGARAE 331

Query: 427 ASVQPAE 433
           A  +P E
Sbjct: 332 AGARPEE 338



>gi|55976571|sp|Q96L91|EP400_HUMAN   E1A binding protein p400 (p400 kDa SWI2/SNF2-related protein) (Domino
            homolog) (hDomino) (CAG repeat protein 32) (Trinucleotide
            repeat-containing gene 12 protein)
          Length = 3160

 Score = 30.0 bits (66), Expect = 2.2
 Identities = 16/53 (30%), Positives = 21/53 (39%)

Query: 410  PAPPHTPFRAASPSGHSASVQPAELPCQPLPERLSQPQPFLRNSPLSPADTRG 462
            P  P  P      +G      P  +  QP P+  +QPQP    +   PA T G
Sbjct: 2554 PQQPPPPLPQPQAAGSQPPAGPPAVQPQPQPQPQTQPQPVQAPAKAQPAITTG 2606



>gi|56404979|sp|Q9ULJ6|ZIM10_HUMAN   Retinoic acid-induced protein 17 (PIAS-like protein Zimp10)
          Length = 1067

 Score = 29.6 bits (65), Expect = 2.9
 Identities = 29/138 (21%), Positives = 38/138 (27%), Gaps = 13/138 (9%)

Query: 337 GRGSADTAQNGGGKGPCWKGVPAATGGPGRVPVPEEXXXXXXXXXXXXXXXXXXERERLQ 396
           G G    +  GG   P   G+P  T  P     P                          
Sbjct: 246 GSGGFGASYPGGPNAPAGMGIPPHTRPPADFTQPAAAAAAAAVAAAAATATATATATVAA 305

Query: 397 AQGKGRGWIGVLGPAPPHTPFRA--------ASPSGHSASVQPAELPCQPLPERLSQPQP 448
            Q      I   GP  P   + +          P+    S+ PA +     P  +S P P
Sbjct: 306 LQETQNKDINQYGPMGPTQAYNSQFMNQPGPRGPASMGGSMNPASMAAGMTPSGMSGP-P 364

Query: 449 FLRNSP----LSPADTRG 462
              N P    +SP  T G
Sbjct: 365 MGMNQPRPPGISPFGTHG 382



>gi|462333|sp|Q00613|HSF1_HUMAN   Heat shock factor protein 1 (HSF 1) (Heat shock transcription
           factor 1) (HSTF 1)
          Length = 529

 Score = 29.6 bits (65), Expect = 2.9
 Identities = 30/133 (22%), Positives = 48/133 (36%), Gaps = 18/133 (13%)

Query: 416 PFRAASPSGHSASVQPAELPCQPLPERLSQPQPFLRN-SPLSPADTRGIQPCQHPLGSAL 474
           P+ A SP+  S+S+          P+ ++   P + + + L+PA      P   P GS  
Sbjct: 239 PYSAPSPAYSSSSLYA--------PDAVASSGPIISDITELAPAS-----PMASPGGSID 285

Query: 475 EEDMGGSGYA----EQRTPPYRPFCRDRSPGHQGKTDLIKRGAACXXXXXXXXXXXXATT 530
           E  +  S       E  +PP  P   + SPG     D +    A             A+ 
Sbjct: 286 ERPLSSSPLVRVKEEPPSPPQSPRVEEASPGRPSSVDTLLSPTALIDSILRESEPAPASV 345

Query: 531 TPSAQAQAEVDCQ 543
           T    A+   D +
Sbjct: 346 TALTDARGHTDTE 358



>gi|46577535|sp|Q96DT7|ZBT10_HUMAN   Zinc finger and BTB domain containing protein 10 (Zinc finger
           protein RIN ZF)
          Length = 847

 Score = 29.6 bits (65), Expect = 2.9
 Identities = 13/39 (33%), Positives = 15/39 (38%)

Query: 330 RAGGFVSGRGSADTAQNGGGKGPCWKGVPAATGGPGRVP 368
           R GG V+  G   T  N GG+   W   P     P   P
Sbjct: 14  RGGGLVTASGGGSTNNNAGGEASAWPPQPQPRQPPPTAP 52



>gi|41688816|sp|Q96T58|MINT_HUMAN   Msx2-interacting protein (SPEN homolog) (SMART/HDAC1 associated
            repressor protein)
          Length = 3664

 Score = 29.6 bits (65), Expect = 2.9
 Identities = 30/97 (30%), Positives = 36/97 (37%), Gaps = 7/97 (7%)

Query: 414  HTPFRAASPSGHSASVQPAELPCQPLPERLSQPQPFLRNSPLSPA----DTRGIQPCQHP 469
            HT F AAS  G  +  + A     P  E L  PQP     P  PA     ++  QP Q P
Sbjct: 3322 HTQFPAASSVGLPSRTKTAAQGPPPEGEPLQPPQPVQSTQPAQPAPPCPPSQLGQPGQPP 3381

Query: 470  ---LGSALEEDMGGSGYAEQRTPPYRPFCRDRSPGHQ 503
               +    +E  G     EQ   P  P  R   P  Q
Sbjct: 3382 SSKMPQVSQEAKGTQTGVEQPRLPAGPANRPPEPHTQ 3418



>gi|13431358|sp|Q9NZB2|CI10_HUMAN   Protein C9orf10
          Length = 1069

 Score = 29.6 bits (65), Expect = 2.9
 Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 17/63 (26%)

Query: 397 AQGKGRGWIGVLG---------PAPPHTPFRAASPSGH--------SASVQPAELPCQPL 439
           +QG+GRG+ GV G            P+  FR A+ SGH        S+    ++   QP+
Sbjct: 881 SQGRGRGFAGVCGFGGPYGETVATGPYRAFRVAAASGHCGAFSGSDSSRTSKSQGGVQPI 940

Query: 440 PER 442
           P +
Sbjct: 941 PSQ 943



>gi|51702148|sp|Q9H987|SYP2L_HUMAN   Synaptopodin 2-like protein
          Length = 977

 Score = 29.6 bits (65), Expect = 2.9
 Identities = 36/135 (26%), Positives = 41/135 (30%), Gaps = 19/135 (14%)

Query: 421 SPSGHSASVQPAELPCQPLPERLSQPQPFLRNSPLSPADTRGIQPCQHPLGSALEEDMGG 480
           SPS H   V     P  P P     PQP    S  SP D+              E D   
Sbjct: 95  SPSPHELQVLSPLSPLSPEPPGAPVPQPLQPGSLRSPPDSEAYYG---------ETDSDA 145

Query: 481 SGYAEQRTPPYRPFCRDRSPGHQGKTDLIKRGAACXXXXXXXXXXXXATTTPS--AQAQA 538
            G A Q  P        R P  +G T     GA              A T P   +Q  +
Sbjct: 146 DGPATQEKP--------RRPRRRGPTRPTPPGAPPDEVYLSDSPAEPAPTIPGPPSQGDS 197

Query: 539 EVDCQNCYKTAALLP 553
            V   +    AAL P
Sbjct: 198 RVSSPSWEDGAALQP 212



>gi|3121951|sp|Q14008|CTOG_HUMAN   CH-TOG protein (Colonic and hepatic tumor over-expressed protein)
          Length = 2032

 Score = 29.6 bits (65), Expect = 2.9
 Identities = 24/78 (30%), Positives = 37/78 (47%), Gaps = 5/78 (6%)

Query: 410  PAPPHTPFRAAS-PSGHSASV--QPAELPCQPLPERLSQPQPFLR--NSPLSPADTRGIQ 464
            PA P  P +A S P G SA    QPA  P +      ++P+P  +   +P   +  +  Q
Sbjct: 1081 PAKPAPPTKATSKPMGGSAPAKFQPASAPAEDCISSSTEPKPDPKKAKAPGLSSKAKSAQ 1140

Query: 465  PCQHPLGSALEEDMGGSG 482
              + P  ++L+ED   SG
Sbjct: 1141 GKKMPSKTSLKEDEDKSG 1158



>gi|20140764|sp|Q9C0J8|WD33_HUMAN   WD-repeat protein 33 (WD-repeat protein WDC146)
          Length = 1336

 Score = 29.6 bits (65), Expect = 2.9
 Identities = 29/107 (27%), Positives = 38/107 (35%), Gaps = 17/107 (15%)

Query: 406 GVLGPAPPHTPFRAASPSGHSASVQPAELPCQPLPERLSQPQPFLRNSPLSPADTRGIQP 465
           G LGP  P  P  ++ P GH     P        P+    PQ  L   P  P  T+G+Q 
Sbjct: 685 GPLGPQGPPGPQGSSGPQGHMGPQGPPGPQSHIGPQGPPGPQGHL--GPQGPPGTQGMQ- 741

Query: 466 CQHPLGSALEEDMGGSGYAEQRTPPYRPFCRDRSPGHQGKTDLIKRG 512
                        G  G    + PP+ P      PG QG    + +G
Sbjct: 742 -------------GPPGPRGMQGPPH-PHGIQGGPGSQGIQGPVSQG 774



 Score = 29.3 bits (64), Expect = 3.8
 Identities = 26/99 (26%), Positives = 35/99 (35%), Gaps = 16/99 (16%)

Query: 408 LGPAPPHTPFRAASPSGHSASVQPAELPCQPLPERLSQPQPFLRNSPLSPADTRGIQPCQ 467
           +GP  P   FR   P G      P      PL +    PQ F+      P   +G     
Sbjct: 617 MGPPGPQGQFRPPGPQGQMGPQGP------PLHQGGGGPQGFM-----GPQGPQG----- 660

Query: 468 HPLGSALEEDMGGSGYAEQRTPPYRPFCRDRSPGHQGKT 506
            P G    +DM G    ++   P+ P      PG QG +
Sbjct: 661 PPQGLPRPQDMHGPQGMQRHPGPHGPLGPQGPPGPQGSS 699



>gi|28201804|sp|Q14789|GOGB1_HUMAN   Golgi autoantigen, golgin subfamily B member 1 (Giantin)
            (Macrogolgin) (Golgi complex-associated protein, 372-kDa)
            (GCP372)
          Length = 3259

 Score = 29.3 bits (64), Expect = 3.8
 Identities = 18/42 (42%), Positives = 22/42 (52%), Gaps = 2/42 (4%)

Query: 127  PHLWKSTLPDVVSHPSDASSYRRGRKKRVPYTKVQLKELERE 168
            P L  +  PD  SH  DAS+ + G    V   K QLKE+E E
Sbjct: 1278 PVLESNLCPDWPSHSEDASALQGGTS--VAQIKAQLKEIEAE 1317



>gi|17366642|sp|Q99704|DOK1_HUMAN   Docking protein 1 (p62(dok)) (Downstream of tyrosine kinase 1)
           (pp62)
          Length = 481

 Score = 29.3 bits (64), Expect = 3.8
 Identities = 34/101 (33%), Positives = 41/101 (40%), Gaps = 20/101 (19%)

Query: 394 RLQAQGK-GRGWIGVLGPAPPHTPFRAASPSGHSASVQPAELPCQPLPERLSQPQPFLRN 452
           R +AQGK G+G          H   RA S   H   V   +LP  P P+ L    P L  
Sbjct: 251 RQKAQGKAGQG----------HDVLRADS---HEGEVAEGKLPSPPGPQELLDSPPALYA 297

Query: 453 SPLSPADTRGIQPC--QHPLGS-ALEEDMGGSGYAEQRTPP 490
            PL   D+  I PC  Q  L S  L+     +G   QR  P
Sbjct: 298 EPL---DSLRIAPCPSQDSLYSDPLDSTSAQAGEGVQRKKP 335



>gi|3183204|sp|Q15032|R3HD_HUMAN   R3H domain protein 1
          Length = 971

 Score = 29.3 bits (64), Expect = 3.8
 Identities = 17/63 (26%), Positives = 24/63 (38%)

Query: 410 PAPPHTPFRAASPSGHSASVQPAELPCQPLPERLSQPQPFLRNSPLSPADTRGIQPCQHP 469
           P PP  P +    +G+ AS  P   P       + QP P +     +P      QP   P
Sbjct: 474 PPPPLPPGQPVPTAGYPASGHPVSQPVLQQQGYIQQPSPQMPACYCAPGHYHSSQPQYRP 533

Query: 470 LGS 472
           + S
Sbjct: 534 VPS 536



>gi|27923810|sp|Q9UJM3|MIG6_HUMAN   Mitogen-inducible gene 6 protein (Mig-6)
          Length = 462

 Score = 29.3 bits (64), Expect = 3.8
 Identities = 20/53 (37%), Positives = 25/53 (47%), Gaps = 13/53 (24%)

Query: 406 GVLGPAPPHTPFRAASPSGHSASVQPAELPCQPLPERLSQPQPFLRNSPLSPA 458
           GV    PP TP + +          P+  PC PL ER S+P P L   P+S A
Sbjct: 122 GVCASTPPLTPIKNS----------PSLFPCAPLCERGSRPLPPL---PISEA 161



>gi|17433053|sp|Q9H461|FZD8_HUMAN   Frizzled 8 precursor (Frizzled-8) (Fz-8) (hFz8)
          Length = 694

 Score = 29.3 bits (64), Expect = 3.8
 Identities = 15/34 (44%), Positives = 15/34 (44%)

Query: 332 GGFVSGRGSADTAQNGGGKGPCWKGVPAATGGPG 365
           G  V G   A  A  GGG G    G P   GGPG
Sbjct: 626 GAAVGGGAGATAAGGGGGPGGGGGGGPGGGGGPG 659



>gi|8134421|sp|O43281|EFS_HUMAN   Embryonal Fyn-associated substrate (HEFS)
          Length = 561

 Score = 29.3 bits (64), Expect = 3.8
 Identities = 28/85 (32%), Positives = 36/85 (42%), Gaps = 19/85 (22%)

Query: 410 PAPPHTPFRAASPSGHSASVQPAELPCQPLPERLSQ---PQP------FLRNSPLSPADT 460
           P PPH P     PS  S S +P  LP  P+PE  S    P P       +++ PL P   
Sbjct: 288 PPPPHRP---RLPSAESLSRRP--LPALPVPEAPSPSPVPSPAPGRKGSIQDRPLPPPPP 342

Query: 461 R-----GIQPCQHPLGSALEEDMGG 480
           R     G +    P G  +E+D  G
Sbjct: 343 RLPGYGGPKVEGDPEGREMEDDPAG 367



>gi|547752|sp|Q01546|K22O_HUMAN   Keratin, type II cytoskeletal 2 oral (Cytokeratin 2P) (K2P) (CK 2P)
          Length = 638

 Score = 29.3 bits (64), Expect = 3.8
 Identities = 20/47 (42%), Positives = 23/47 (48%), Gaps = 8/47 (17%)

Query: 327 GESRAGGFVSGRGSADTAQN-GGGKGPCW-------KGVPAATGGPG 365
           G SRAGGF  GR S   A   GGG G  +       +GV +  GG G
Sbjct: 74  GSSRAGGFGGGRSSCGFAGGYGGGFGGSYGGGFGGGRGVGSGFGGAG 120



>gi|1352066|sp|P48634|BAT2_HUMAN   Large proline-rich protein BAT2 (HLA-B-associated transcript 2)
           (G2)
          Length = 2142

 Score = 29.3 bits (64), Expect = 3.8
 Identities = 23/72 (31%), Positives = 25/72 (34%), Gaps = 7/72 (9%)

Query: 411 APPHTPFRAASPSGHSASVQPAELPCQPLPERLSQPQPFLRNSPLSPADTRGIQPCQHPL 470
           APP  P   A P        P ELP  P P   S P P     P  PA     Q    P 
Sbjct: 498 APPAAPSTPAPPPA-----VPKELPAPPAPPPASAPTP--ETEPEEPAQAPPAQSTPTPG 550

Query: 471 GSALEEDMGGSG 482
            +A    + G G
Sbjct: 551 VAAAPTLVSGGG 562



>gi|32469743|sp|Q8N1I0|DOC4_HUMAN   Dedicator of cytokinesis protein 4
          Length = 1966

 Score = 29.3 bits (64), Expect = 3.8
 Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 2/50 (4%)

Query: 407  VLGPAPPHTPFRAASPSGHSASVQPAELPCQPLPERLSQ--PQPFLRNSP 454
            ++ P  P  P + ASP+ H+ SV P+     PL   +    P P   +SP
Sbjct: 1785 LISPPVPPRPTQTASPARHTTSVSPSPAGRSPLKGSVQSFTPSPVEYHSP 1834



>gi|1351829|sp|P08913|ADA2A_HUMAN   Alpha-2A adrenergic receptor (Alpha-2A adrenoceptor) (Alpha-2A
           adrenoreceptor) (Alpha-2AAR subtype C10)
          Length = 450

 Score = 28.9 bits (63), Expect = 5.0
 Identities = 26/95 (27%), Positives = 37/95 (38%), Gaps = 15/95 (15%)

Query: 411 APPHTPFRAASPSGHSASVQPAELPCQPLPERLSQPQPFLRNSPLSPADTRGIQPCQHPL 470
           APP    R  +  G   S  P     +PLP +L+        +P  P DT  +       
Sbjct: 241 APPGGTERRPNGLGPERSAGPGGAEAEPLPTQLNGAPG--EPAPAGPRDTDALD------ 292

Query: 471 GSALEEDMGGSGYAEQRTPPYRPFCRDRSPGHQGK 505
                E+   S +AE+   P RP   +R P  +GK
Sbjct: 293 ----LEESSSSDHAERPPGPRRP---ERGPRGKGK 320



>gi|6226623|sp|Q13227|GPS2_HUMAN   G protein pathway suppressor 2 (GPS2 protein)
          Length = 327

 Score = 28.9 bits (63), Expect = 5.0
 Identities = 24/75 (32%), Positives = 31/75 (41%), Gaps = 6/75 (8%)

Query: 393 ERLQAQGKGRGWIGVLGPAPPHTPFRAASPSGHSASVQPAELPCQPLPERLSQPQP--FL 450
           E  Q QG   G  G   P P + P + A    +S S Q       P  + LSQPQP  + 
Sbjct: 176 EHGQFQGSPGGAYGTAQPPPHYGPTQPA----YSPSQQLRAPSAFPAVQYLSQPQPQPYA 231

Query: 451 RNSPLSPADTRGIQP 465
            +    P  T  +QP
Sbjct: 232 VHGHFQPTQTGFLQP 246



>gi|121082|sp|P23378|GCSP_HUMAN   Glycine dehydrogenase [decarboxylating], mitochondrial precursor
           (Glycine decarboxylase) (Glycine cleavage system
           P-protein)
          Length = 1020

 Score = 28.9 bits (63), Expect = 5.0
 Identities = 12/26 (46%), Positives = 14/26 (53%)

Query: 329 SRAGGFVSGRGSADTAQNGGGKGPCW 354
           +RA G   GRG     +  GG GPCW
Sbjct: 5   ARAWGLRLGRGVGGGRRLAGGSGPCW 30



>gi|48428096|sp|Q8TDT2|GP152_HUMAN   Probable G-protein coupled receptor 152 (G-protein coupled receptor
           PGR5)
          Length = 470

 Score = 28.9 bits (63), Expect = 5.0
 Identities = 23/83 (27%), Positives = 30/83 (36%), Gaps = 13/83 (15%)

Query: 420 ASPSGHSASVQPAELPCQPLPERLSQPQ---------PFLRNSPLSPADTRGIQPCQHPL 470
           A P     +     L  QP  + ++QPQ         P   + P SP D     P  HP 
Sbjct: 380 AQPQSDPTAQPQLNLMAQPQSDSVAQPQADTNVQTPAPAASSVP-SPCDEASPTPSSHPT 438

Query: 471 GSALEEDM---GGSGYAEQRTPP 490
             ALE+        G +   TPP
Sbjct: 439 PGALEDPATPPASEGESPSSTPP 461



>gi|20455262|sp|Q9BXA9|SALL3_HUMAN   Sal-like protein 3 (Zinc finger protein SALL3) (hSALL3)
          Length = 1300

 Score = 28.9 bits (63), Expect = 5.0
 Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 2/59 (3%)

Query: 409 GPAPPHTPFRAASPSGHSASVQPAELPCQPLPERLSQPQPFLRNSP--LSPADTRGIQP 465
           G + P  P   ++P+  SA+  PA     P P+  +  QP   ++P  L+P    G  P
Sbjct: 298 GASTPGGPAEPSAPAAPSAAPAPAAPAPAPAPQSAASSQPQSASTPPALAPGSLLGAAP 356



>gi|57012959|sp|Q8TAQ2|SMRC2_HUMAN   SWI/SNF-related matrix-associated actin-dependent regulator of
            chromatin subfamily C member 2 (SWI/SNF complex 170 kDa
            subunit) (BRG1-associated factor 170)
          Length = 1214

 Score = 28.5 bits (62), Expect = 6.5
 Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)

Query: 63   YAAGPYHHHQPMPGYLDMPVVPGLGGPGESRHEPLGLP 100
            +   P+ + Q  P  +    VPG G PG + + PLGLP
Sbjct: 1046 HGPSPFPNQQTPPSMMP-GAVPGSGHPGVAGNAPLGLP 1082



>gi|56757653|sp|Q13029|PRDM2_HUMAN   PR-domain zinc finger protein 2 (Retinoblastoma protein-interacting
            zinc-finger protein) (Zinc finger protein RIZ)
            (MTE-binding protein) (MTB-ZF) (GATA-3 binding protein
            G3B)
          Length = 1718

 Score = 28.5 bits (62), Expect = 6.5
 Identities = 28/95 (29%), Positives = 33/95 (34%), Gaps = 11/95 (11%)

Query: 407  VLGPAPPHTPFRAASPSGHSASVQPAELPCQPLPERLSQPQPFLRNSPLSPADTRGIQPC 466
            +L P  P +P     P    A+  P  LP  PLP   S   P    SPLS A  +   P 
Sbjct: 964  LLIPTDPSSP-PPCPPVLTVATPPPPLLPTVPLPAPSSSASPHPCPSPLSNATAQSPLPI 1022

Query: 467  QHPLGSALEEDMGGSGYAEQRTPPYRPFCRDRSPG 501
              P  S           +    PP  P     SPG
Sbjct: 1023 LSPTVSP----------SPSPIPPVEPLMSAASPG 1047



>gi|119763|sp|P00748|FA12_HUMAN   Coagulation factor XII precursor (Hageman factor) (HAF)
          Length = 615

 Score = 28.5 bits (62), Expect = 6.5
 Identities = 19/53 (35%), Positives = 25/53 (47%), Gaps = 5/53 (9%)

Query: 415 TPFRAASPSGHSASVQPAELPCQPLPERLSQPQPFLRNSPLSPADTRGIQPCQ 467
           TP +AA P+  S  +    +P QP P +   PQP  R  P S   T G  P +
Sbjct: 297 TPTQAAPPTPVSPRLHVPLMPAQPAPPK---PQPTTRTPPQS--QTPGALPAK 344



>gi|12643319|sp|O75665|OFD1_HUMAN   Oral-facial-digital syndrome 1 protein (Protein 71-7A)
          Length = 1012

 Score = 28.5 bits (62), Expect = 6.5
 Identities = 13/38 (34%), Positives = 17/38 (44%)

Query: 398 QGKGRGWIGVLGPAPPHTPFRAASPSGHSASVQPAELP 435
           +G GR  I    P P   P  + + S HS S+ P   P
Sbjct: 753 EGLGRSHIASPSPCPDRMPLPSPTESRHSLSIPPVSSP 790



>gi|59798973|sp|Q9H0K1|SN1L2_HUMAN   Serine/threonine-protein kinase SNF1-like kinase 2 (Qin-induced
           kinase)
          Length = 926

 Score = 28.5 bits (62), Expect = 6.5
 Identities = 26/97 (26%), Positives = 35/97 (36%), Gaps = 25/97 (25%)

Query: 410 PAPPHTPFRAASPSGHSASVQPAELPCQPLPERLSQPQPFLRNSPLSPADTRGIQPCQHP 469
           P PP  P   A+P+    S Q  ELP    P            +P  P       PCQ+P
Sbjct: 829 PPPPRQP--GAAPAPLQFSYQTCELPSAASP------------APDYPT------PCQYP 868

Query: 470 LGSALEEDMGG-----SGYAEQRTPPYRPFCRDRSPG 501
           +  A + D+ G     S   ++    Y P      PG
Sbjct: 869 VDGAQQSDLTGPDCPRSPGLQEAPSSYDPLALSELPG 905



>gi|59800455|sp|Q9UPY6|WASF3_HUMAN   Wiskott-Aldrich syndrome protein family member 3 (WASP-family
           protein member 3) (WAVE-3 protein) (Verprolin homology
           domain-containing protein 3)
          Length = 502

 Score = 28.5 bits (62), Expect = 6.5
 Identities = 22/66 (33%), Positives = 27/66 (40%), Gaps = 17/66 (25%)

Query: 409 GPAPPHTPFRAASPSGHSASVQPAELPCQPLPERLSQPQPFLRNSPLSPADTRGIQPCQH 468
           GP PP  P     PS  +A V P ++P QP         PF    P S + T    P  H
Sbjct: 342 GPPPPPPP--PVIPSAQTAFVSPLQMPMQP---------PF----PASASSTHAAPP--H 384

Query: 469 PLGSAL 474
           P  + L
Sbjct: 385 PPSTGL 390



>gi|6015038|sp|Q13202|DUS8_HUMAN   Dual specificity protein phosphatase 8 (Dual specificity protein
           phosphatase hVH-5)
          Length = 625

 Score = 28.5 bits (62), Expect = 6.5
 Identities = 19/57 (33%), Positives = 21/57 (36%), Gaps = 10/57 (17%)

Query: 248 RPRSRPQPEAGTRRTGPWH----------RQVPVGTQSGTQELAEGGWGQELAEGGW 294
           RPR RP+P AG+    P H          RQ P    S        G GQ    G W
Sbjct: 452 RPRRRPRPPAGSPARSPAHSLGLNFGDAARQTPRHGLSALSAPGLPGPGQPAGPGAW 508



>gi|14286145|sp|P43365|MAGC_HUMAN   Melanoma-associated antigen 12 (MAGE-12 antigen) (MAGE12F)
          Length = 314

 Score = 28.5 bits (62), Expect = 6.5
 Identities = 27/96 (28%), Positives = 35/96 (36%), Gaps = 6/96 (6%)

Query: 393 ERLQAQGKGRGWIGVLGPAPPHTPFRAASPSGHSASVQPAELPCQPLPERLSQPQPFLRN 452
           E L+AQG+  G +G   PA        AS S     V   E+P    P     PQ     
Sbjct: 14  EGLEAQGEALGLVGAQAPATEEQ--ETASSSSTLVEVTLREVPAAESPSPPHSPQ----G 67

Query: 453 SPLSPADTRGIQPCQHPLGSALEEDMGGSGYAEQRT 488
           +   P         Q   GS+ EE  G S + +  T
Sbjct: 68  ASTLPTTINYTLWSQSDEGSSNEEQEGPSTFPDLET 103



>gi|46396456|sp|Q8IY33|MLK2_HUMAN   MICAL-like protein 2
          Length = 904

 Score = 28.5 bits (62), Expect = 6.5
 Identities = 22/63 (34%), Positives = 26/63 (41%), Gaps = 10/63 (15%)

Query: 401 GRGWIGVLGPAPPHTPFRAASPSGHSASVQPAELPCQPLPERLSQPQPFLRNSPLSPADT 460
           GR  IG +      +      PSG  A VQ A+LP  P P          R  PLSPA T
Sbjct: 108 GRSPIGGMAGVKRASEDSEEEPSGKKAPVQAAKLP-SPAP---------ARKPPLSPAQT 157

Query: 461 RGI 463
             +
Sbjct: 158 NPV 160



>gi|47117582|sp|Q8IXZ2|ZNCC3_HUMAN   Zinc finger CCCH type domain containing protein 3
          Length = 948

 Score = 28.5 bits (62), Expect = 6.5
 Identities = 22/79 (27%), Positives = 32/79 (40%), Gaps = 4/79 (5%)

Query: 411 APPHTPFRAASPSGHSASVQPAELPCQPLPERLSQPQPFLRNSPLSPADTRGIQPCQHPL 470
           APPH P  +ASPS   AS   +       P  L    P L+ + L+ A +  +  C+ P 
Sbjct: 856 APPHCPGGSASPSSSKASSSSSS--SSSPPASLDHEAPSLQEAALAAACSNRL--CKLPS 911

Query: 471 GSALEEDMGGSGYAEQRTP 489
             +L+           R P
Sbjct: 912 FISLQSSPSPGAQPRVRAP 930



>gi|46397857|sp|Q02818|NCB1_HUMAN   Nucleobindin 1 precursor (CALNUC)
          Length = 461

 Score = 28.5 bits (62), Expect = 6.5
 Identities = 20/78 (25%), Positives = 33/78 (42%), Gaps = 13/78 (16%)

Query: 157 YTKVQLKELEREYATNKFITKDKRRRISATTNLSERQPG---AERWELSEGT-------- 205
           YT+ +L+  E E A  +     K +R+S  T    R  G   A++ EL +          
Sbjct: 342 YTEEELRRFEEELAAREAELNAKAQRLSQETEALGRSQGRLEAQKRELQQAVLHMEQQKQ 401

Query: 206 --ESEPGTRGYAVHPSGR 221
             + + G +  A HP G+
Sbjct: 402 QQQQQQGHKAPAAHPEGQ 419



>gi|24212390|sp|Q9Y467|SALL2_HUMAN   Sal-like protein 2 (Zinc finger protein SALL2) (HSal2)
          Length = 1007

 Score = 28.1 bits (61), Expect = 8.5
 Identities = 33/143 (23%), Positives = 49/143 (34%), Gaps = 16/143 (11%)

Query: 326 GGESRAGGFVSGRGSADTAQNGGGKGPCWKGVPAATGGPGRVPVPEEXXXXXXXXXXXXX 385
           GG+   GG     G    AQ  G +     G  +      + P PEE             
Sbjct: 715 GGQIPNGGTALPEGGG-AAQENGSEQSTVSGARSFPQQQSQQPSPEEELSEEEEEEDEEE 773

Query: 386 XXXXXERERLQAQGKGRGW---IGVLGPAPPHT-------PFRAASPSG-----HSASVQ 430
                + + L  +G   G    I V G +   +          AA+ +G     +  + Q
Sbjct: 774 EEDVTDEDSLAGRGSESGGEKAISVRGDSEEASGAEEEVGTVAAAATAGKEMDSNEKTTQ 833

Query: 431 PAELPCQPLPERLSQPQPFLRNS 453
            + LP  P P+ L QPQP  + S
Sbjct: 834 QSSLPPPPPPDSLDQPQPMEQGS 856



>gi|25091115|sp|Q9UKM9|RALY_HUMAN   RNA-binding protein Raly (hnRNP associated with lethal yellow
           homolog) (Autoantigen p542)
          Length = 306

 Score = 28.1 bits (61), Expect = 8.5
 Identities = 18/49 (36%), Positives = 19/49 (38%), Gaps = 11/49 (22%)

Query: 324 KKGGESRAGGFVSGRGSADTAQNGGGKGPCWKGVPAATGGPGRVPVPEE 372
           KKG    AGG   G GS      GGG            GG  R P P+E
Sbjct: 223 KKGDGGGAGGGGGGGGSGGGGSGGGG-----------GGGSSRPPAPQE 260



>gi|115351|sp|P05997|CO5A2_HUMAN   Collagen alpha 2(V) chain precursor
          Length = 1496

 Score = 28.1 bits (61), Expect = 8.5
 Identities = 32/107 (29%), Positives = 41/107 (38%), Gaps = 5/107 (4%)

Query: 402  RGWIGVLGPAPPHTPFRAASPSGHSASVQPAELPCQPLPERLSQPQPFLRNSPLSPADTR 461
            +G  G+ GP  P  P     PSG   +  P   P  P   R S  +      P  P    
Sbjct: 1160 QGSAGIPGPFGPRGPPGPVGPSGKEGNPGPLG-PLGPPGVRGSVGEAGPEGPPGEPGPPG 1218

Query: 462  GIQPCQHPLGSALEEDMGGSGYAEQRTPPYRPFCRDR-SPGHQGKTD 507
               P  H L +AL + MG   Y E    P   F  D+ +P  + KTD
Sbjct: 1219 PPGPPGH-LTAALGDIMG--HYDESMPDPLPEFTEDQAAPDDKNKTD 1262



>gi|2506535|sp|Q01851|PO4F1_HUMAN   POU domain, class 4, transcription factor 1 (Brain-specific
           homeobox/POU domain protein 3A) (Brn-3A) (Oct-T1)
           (Homeobox/POU domain protein RDC-1)
          Length = 423

 Score = 28.1 bits (61), Expect = 8.5
 Identities = 18/40 (45%), Positives = 19/40 (47%), Gaps = 3/40 (7%)

Query: 326 GGESRAGGFVSGRGSADTAQNGGGKGPCWKGVPAATGGPG 365
           GG   AG    G G+ D    GGG GP   G P   GGPG
Sbjct: 132 GGAGGAGAAAGGGGAHDGP--GGGGGPGGGGGPGG-GGPG 168






  Database: Non-redundant SwissProt sequences
    Posted date:  Mar 15, 2005 10:11 AM
  Number of letters in database: 60,490,055
  Number of sequences in database:  164,271
  
Lambda     K      H
   0.314    0.133    0.425 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,484,138
Number of Sequences: 164271
Number of extensions: 83412
Number of successful extensions: 336
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 285
Number of HSP's gapped (non-prelim): 61
length of query: 569
length of database: 6,424,444
effective HSP length: 101
effective length of query: 468
effective length of database: 5,222,039
effective search space: 2443914252
effective search space used: 2443914252
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 61 (28.1 bits)