RID=1111168121-29771-158269037868.BLASTQ4, FGENESH: 13 6 exon (s) 253998

BLASTP 2.2.10 [Oct-19-2004]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
RID: 1111168121-29771-158269037868.BLASTQ4
Query= FGENESH: 13 6 exon (s) 253998 - 267579 419 aa, chain - (419 letters)
Database: Non-redundant SwissProt sequences 164,271 sequences; 60,490,055 total letters
If you have any problems or questions with the results of this search
please refer to the BLAST FAQs
Taxonomy reports
Distribution of 256 Blast Hits on the Query Sequence


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|13124743|sp|P31260|HXA10_HUMAN  Homeobox protein Hox-A10 ...   386   e-108 
gi|13124744|sp|P31270|HXA11_HUMAN  Homeobox protein Hox-A11 ...   198   3e-51 
gi|20141612|sp|Q9NYD6|HXC10_HUMAN  Homeobox protein Hox-C10       172   1e-43 
gi|123289|sp|P28358|HXD10_HUMAN  Homeobox protein Hox-D10 (H...   172   3e-43 
gi|6166219|sp|P31269|HXA9_HUMAN  Homeobox protein Hox-A9 (Ho...   124   5e-29 
gi|20141537|sp|P31274|HXC9_HUMAN  Homeobox protein Hox-C9 (H...   124   8e-29 
gi|20141507|sp|P17482|HXB9_HUMAN  Homeobox protein Hox-B9 (H...   122   2e-28 
gi|123286|sp|P28356|HXD9_HUMAN  Homeobox protein Hox-D9 (Hox...   120   7e-28 
gi|12644203|sp|P31277|HXD11_HUMAN  Homeobox protein Hox-D11 ...   105   4e-23 
gi|3287858|sp|O43248|HXC11_HUMAN  Homeobox protein Hox-C11         95   4e-20 
gi|20141506|sp|P17481|HXB8_HUMAN  Homeobox protein Hox-B8 (H...    90   1e-18 
gi|13124745|sp|P31273|HXC8_HUMAN  Homeobox protein Hox-C8 (H...    90   2e-18 
gi|400000|sp|P09067|HXB5_HUMAN  Homeobox protein Hox-B5 (Hox...    90   2e-18 
gi|13124737|sp|P13378|HXD8_HUMAN  Homeobox protein Hox-D8 (H...    89   4e-18 
gi|17378385|sp|P31267|HXA6_HUMAN  Homeobox protein Hox-A6 (H...    88   5e-18 
gi|13124738|sp|P17509|HXB6_HUMAN  Homeobox protein Hox-B6 (H...    87   8e-18 
gi|52788238|sp|P20719|HXA5_HUMAN  Homeobox protein Hox-A5 (H...    86   2e-17 
gi|232262|sp|Q00444|HXC5_HUMAN  Homeobox protein Hox-C5 (Hox...    84   7e-17 
gi|3915721|sp|P31268|HXA7_HUMAN  Homeobox protein Hox-A7 (Ho...    84   9e-17 
gi|123255|sp|P09629|HXB7_HUMAN  Homeobox protein Hox-B7 (Hox...    84   9e-17 
gi|123279|sp|P09017|HXC4_HUMAN  Homeobox protein Hox-C4 (Hox...    81   6e-16 
gi|20141493|sp|P09630|HXC6_HUMAN  Homeobox protein Hox-C6 (H...    81   6e-16 
gi|20141491|sp|P09016|HXD4_HUMAN  Homeobox protein Hox-D4 (H...    80   1e-15 
gi|6166217|sp|Q00056|HXA4_HUMAN  Homeobox protein Hox-A4 (Ho...    80   1e-15 
gi|20141538|sp|P31275|HXC12_HUMAN  Homeobox protein Hox-C12 ...    79   3e-15 
gi|17378648|sp|Q9GZZ0|HXD1_HUMAN  Homeobox protein Hox-D1          78   5e-15 
gi|547692|sp|P17483|HXB4_HUMAN  Homeobox protein Hox-B4 (Hox...    78   5e-15 
gi|1708540|sp|P52945|IPF1_HUMAN  Insulin promoter factor-1 (...    77   8e-15 
gi|12644227|sp|P35452|HXD12_HUMAN  Homeobox protein Hox-D12 ...    77   8e-15 
gi|6166222|sp|P31249|HXD3_HUMAN  Homeobox protein Hox-D3 (Ho...    76   2e-14 
gi|50403792|sp|Q92826|HXB13_HUMAN  Homeobox protein Hox-B13        76   2e-14 
gi|6016293|sp|O43365|HXA3_HUMAN  Homeobox protein Hox-A3 (Ho...    76   2e-14 
gi|6016292|sp|O43364|HXA2_HUMAN  Homeobox protein Hox-A2           75   4e-14 
gi|123270|sp|P14652|HXB2_HUMAN  Homeobox protein Hox-B2 (Hox...    75   5e-14 
gi|20141539|sp|P31276|HXC13_HUMAN  Homeobox protein Hox-C13 ...    74   7e-14 
gi|6166216|sp|P49639|HXA1_HUMAN  Homeobox protein Hox-A1 (Ho...    74   1e-13 
gi|2828197|sp|P31271|HXA13_HUMAN  Homeobox protein Hox-A13 (...    74   1e-13 
gi|123268|sp|P14651|HXB3_HUMAN  Homeobox protein Hox-B3 (Hox...    73   2e-13 
gi|123271|sp|P14653|HXB1_HUMAN  Homeobox protein Hox-B1 (Hox...    72   3e-13 
gi|1345720|sp|P47902|CDX1_HUMAN  Homeobox protein CDX-1 (Cau...    72   3e-13 
gi|2851475|sp|P35453|HXD13_HUMAN  Homeobox protein Hox-D13 (...    72   3e-13 
gi|1709079|sp|P50222|MEOX2_HUMAN  Homeobox protein MOX-2 (Me...    72   5e-13 
gi|20138327|sp|Q9BZM3|GSH2_HUMAN  Homeobox protein GSH-2           72   5e-13 
gi|27923786|sp|Q9H4S2|GSHI_HUMAN  Homeobox protein GSH-1           71   6e-13 
gi|20141282|sp|Q99626|CDX2_HUMAN  Homeobox protein CDX-2 (Ca...    71   8e-13 
gi|1709078|sp|P50221|MEOX1_HUMAN  Homeobox protein MOX-1 (Me...    70   1e-12 
gi|3023467|sp|O14627|CDX4_HUMAN  Homeobox protein CDX-4 (Cau...    69   3e-12 
gi|45644931|sp|P50219|HLXB9_HUMAN  Homeobox protein HB9            68   5e-12 
gi|13959687|sp|P35548|MSX2_HUMAN  Homeobox protein MSX-2 (Ho...    65   6e-11 
gi|12230077|sp|Q14549|GBX1_HUMAN  Homeobox protein GBX-1 (Ga...    64   1e-10 
gi|23503066|sp|P28360|MSX1_HUMAN  Homeobox protein MSX-1 (Ho...    64   1e-10 
gi|1730095|sp|P52954|LBX1_HUMAN  Transcription factor LBX1         63   2e-10 
gi|12644308|sp|P52951|GBX2_HUMAN  Homeobox protein GBX-2 (Ga...    62   5e-10 
gi|13431329|sp|Q9UMQ3|BARX2_HUMAN  Homeobox protein BarH-like 2    61   6e-10 
gi|29336920|sp|Q9BZE3|BARH1_HUMAN  BarH-like 1 homeobox prot...    60   1e-09 
gi|20532396|sp|O43763|TLX2_HUMAN  T-cell leukemia homeobox p...    60   1e-09 
gi|27923815|sp|Q8TAU0|NKX23_HUMAN  Homeobox protein Nkx-2.3 ...    59   4e-09 
gi|14194481|sp|Q9HBU1|BARX1_HUMAN  Homeobox protein BarH-like 1    59   4e-09 
gi|1352398|sp|P49640|EVX1_HUMAN  Homeobox even-skipped homol...    58   5e-09 
gi|6016208|sp|O15522|NK28_HUMAN  Homeobox protein Nkx-2.8 (H...    58   5e-09 
gi|21903415|sp|P19622|HME2_HUMAN  Homeobox protein engrailed...    58   7e-09 
gi|27923817|sp|Q9H2Z4|NK24_HUMAN  Homeobox protein Nkx-2.4 (...    58   7e-09 
gi|2506529|sp|Q07687|DLX2_HUMAN  Homeobox protein DLX-2            57   9e-09 
gi|47117915|sp|Q9NY43|BARH2_HUMAN  BarH-like 2 homeobox protein    57   9e-09 
gi|12231013|sp|Q03828|EVX2_HUMAN  Homeobox even-skipped homo...    57   9e-09 
gi|12230168|sp|Q9UBX0|HESX1_HUMAN  Homeobox expressed in ES ...    57   2e-08 
gi|547658|sp|Q03014|HHEX_HUMAN  Homeobox protein PRH (Hemato...    57   2e-08 
gi|17377578|sp|Q99801|NKX31_HUMAN  Homeobox protein Nkx-3.1        57   2e-08 
gi|399982|sp|P31314|TLX1_HUMAN  T-cell leukemia homeobox pro...    57   2e-08 
gi|14917010|sp|Q05925|HME1_HUMAN  Homeobox protein engrailed...    57   2e-08 
gi|6016205|sp|O95096|NKX22_HUMAN  Homeobox protein Nkx-2.2 (...    56   2e-08 
gi|1174819|sp|P43699|TITF1_HUMAN  Thyroid transcription fact...    56   2e-08 
gi|23831508|sp|O43711|TLX3_HUMAN  T-cell leukemia homeobox p...    56   3e-08 
gi|3913487|sp|O60479|DLX3_HUMAN  Homeobox protein DLX-3            55   3e-08 
gi|12644329|sp|P56178|DLX5_HUMAN  Homeobox protein DLX-5           55   4e-08 
gi|6016210|sp|P78367|NK32_HUMAN  Homeobox protein Nkx-3.2 (B...    54   1e-07 
gi|3915680|sp|Q92988|DLX4_HUMAN  Homeobox protein DLX-4 (DLX...    54   1e-07 
gi|1708211|sp|P52952|NK25_HUMAN  Homeobox protein Nkx-2.5 (H...    54   1e-07 
gi|20532295|sp|Q9UIW0|VAX2_HUMAN  Ventral anterior homeobox 2      53   2e-07 
gi|19862512|sp|Q04743|EMX2_HUMAN  Homeobox protein EMX2 (Emp...    53   2e-07 
gi|6174907|sp|Q99697|PITX2_HUMAN  Pituitary homeobox 2 (RIEG...    52   4e-07 
gi|38605720|sp|P56177|DLX1_HUMAN  Homeobox protein DLX-1           52   4e-07 
gi|12644330|sp|P56179|DLX6_HUMAN  Homeobox protein DLX-6           51   6e-07 
gi|57015304|sp|Q04741|EMX1_HUMAN  Homeobox protein EMX1 (Emp...    51   6e-07 
gi|27923733|sp|Q96QS3|ARX_HUMAN  Homeobox protein ARX (Arist...    51   8e-07 
gi|6093723|sp|O75364|PITX3_HUMAN  Pituitary homeobox 3 (Home...    50   1e-06 
gi|3024482|sp|P78337|PITX1_HUMAN  Pituitary homeobox 1 (Hind...    50   1e-06 
gi|13626112|sp|Q9H161|ALX4_HUMAN  Homeobox protein aristales...    50   1e-06 
gi|3023579|sp|Q15699|CRT1_HUMAN  Cartilage homeoprotein 1 (C...    49   2e-06 
gi|2833256|sp|Q14774|HLX1_HUMAN  Homeobox protein HLX1 (Home...    49   2e-06 
gi|6016211|sp|P78426|NK61_HUMAN  Homeobox protein Nkx-6.1          49   4e-06 
gi|13626107|sp|O95076|ALX3_HUMAN  Homeobox protein aristales...    47   2e-05 
gi|8134644|sp|Q99453|PHX2B_HUMAN  Paired mesoderm homeobox p...    47   2e-05 
gi|8134640|sp|O14813|PHX2A_HUMAN  Paired mesoderm homeobox p...    47   2e-05 
gi|123402|sp|P09086|PO2F2_HUMAN  POU domain, class 2, transc...    46   2e-05 
gi|7531125|sp|P56915|GSC_HUMAN  Homeobox protein goosecoid         45   4e-05 
gi|48428084|sp|Q8N693|ESX1L_HUMAN  Extraembryonic, spermatog...    45   6e-05 
gi|17380297|sp|Q9Y2V3|RX_HUMAN  Retinal homeobox protein Rx ...    45   6e-05 
gi|18202099|sp|O60902|SHOX2_HUMAN  Short stature homeobox pr...    45   6e-05 
gi|8247951|sp|P23759|PAX7_HUMAN  Paired box protein Pax-7 (H...    44   1e-04 
gi|12644475|sp|Q99811|PRRX2_HUMAN  Paired mesoderm homeobox ...    44   1e-04 
gi|6831676|sp|O15266|SHOX_HUMAN  Short stature homeobox prot...    44   1e-04 
gi|3287764|sp|O43186|CRX_HUMAN  Cone-rod homeobox protein          44   1e-04 
gi|6174916|sp|P54821|PRRX1_HUMAN  Paired mesoderm homeobox p...    43   2e-04 
gi|25009572|sp|Q9NZR4|VSX1_HUMAN  Visual system homeobox 1 (...    43   2e-04 
gi|1172022|sp|P23760|PAX3_HUMAN  Paired box protein Pax-3 (H...    43   2e-04 
gi|37537960|sp|Q8NHV9|PEPP1_HUMAN  Paired-like homeobox prot...    42   4e-04 
gi|6093787|sp|O75360|PROP1_HUMAN  Homeobox protein prophet o...    42   4e-04 
gi|17374365|sp|P58304|CHX10_HUMAN  Homeobox protein CHX10 (C...    42   5e-04 
gi|28202257|sp|P14859|PO2F1_HUMAN  POU domain, class 2, tran...    41   9e-04 
gi|417427|sp|P32243|OTX2_HUMAN  Homeobox protein OTX2              40   0.001 
gi|37537987|sp|Q9BQY4|PEP2_HUMAN  Paired-like homeobox prote...    40   0.001 
gi|417425|sp|P32242|OTX1_HUMAN  Homeobox protein OTX1              40   0.002 
gi|51702790|sp|P63015|PAX6_MOUSE  Paired box protein Pax-6 (...    39   0.003 
gi|6685480|sp|O15499|GSCL_HUMAN  Homeobox protein goosecoid-...    39   0.004 
gi|3914276|sp|O43316|PAX4_HUMAN  Paired box protein Pax-4          39   0.004 
gi|18202938|sp|Q9H2C1|LHX5_HUMAN  LIM/homeobox protein Lhx5        38   0.006 
gi|37999770|sp|Q9BYU1|PBX4_HUMAN  Pre-B-cell leukemia transc...    38   0.006 
gi|18202510|sp|Q15911|ATBF1_HUMAN  Alpha-fetoprotein enhance...    38   0.007 
gi|730281|sp|P40426|PBX3_HUMAN  Pre-B-cell leukemia transcri...    37   0.010 
gi|1352729|sp|P40425|PBX2_HUMAN  Pre-B-cell leukemia transcr...    37   0.010 
gi|28201861|sp|Q9UKI9|PO2F3_HUMAN  POU domain, class 2, tran...    37   0.010 
gi|60416412|sp|P48742|LHX1_HUMAN  LIM/homeobox protein Lhx1 ...    37   0.016 
gi|20141754|sp|P41778|PBX1_MOUSE  Pre-B-cell leukemia transc...    37   0.016 
gi|27923801|sp|Q8TE12|LMX1A_HUMAN  LIM homeobox transcriptio...    36   0.028 
gi|8247930|sp|O60663|LMX1B_HUMAN  LIM homeobox transcription...    36   0.028 
gi|12643415|sp|Q9UBR4|LHX3_HUMAN  LIM/homeobox protein Lhx3        35   0.062 
gi|2495306|sp|Q14863|PO6F1_HUMAN  POU domain, class 6, trans...    35   0.062 
gi|12230578|sp|O95475|SIX6_HUMAN  Homeobox protein SIX6 (Sin...    34   0.082 
gi|8247936|sp|P50458|LHX2_HUMAN  LIM/homeobox protein Lhx2 (...    34   0.11  
gi|20138668|sp|Q969G2|LHX4_HUMAN  LIM/homeobox protein Lhx4        34   0.11  
gi|2495295|sp|Q15583|TGIF_HUMAN  5'-TG-3' interacting factor...    33   0.14  
gi|6094293|sp|O95343|SIX3_HUMAN  Homeobox protein SIX3 (Sine...    33   0.14  
gi|12643346|sp|Q9NQ69|LHX9_HUMAN  LIM/homeobox protein Lhx9        33   0.14  
gi|47117872|sp|P78412|IRX6_HUMAN  Iroquois-class homeodomain...    33   0.18  
gi|2495290|sp|Q15475|SIX1_HUMAN  Homeobox protein SIX1 (Sine...    33   0.24  
gi|12230598|sp|Q9NPC8|SIX2_HUMAN  Homeobox protein SIX2 (Sin...    32   0.31  
gi|47117873|sp|P78414|IRX1_HUMAN  Iroquois-class homeodomain...    32   0.40  
gi|28380240|sp|Q9C0A1|ZFHX2_HUMAN  Zinc finger homeobox prot...    32   0.40  
gi|12644347|sp|P78413|IRX4_HUMAN  Iroquois-class homeodomain...    32   0.53  
gi|28201884|sp|P78424|PO6F2_HUMAN  POU domain, class 6, tran...    32   0.53  
gi|22256962|sp|Q9BY11|PAC1_HUMAN  Protein kinase C and casei...    31   0.69  
gi|47117871|sp|P78411|IRX5_HUMAN  Iroquois-class homeodomain...    31   0.69  
gi|47117874|sp|P78415|IRX3_HUMAN  Iroquois-class homeodomain...    31   0.69  
gi|47117908|sp|Q9BZI1|IRX2_HUMAN  Iroquois-class homeodomain...    31   0.69  
gi|28202258|sp|P20265|PO3F2_HUMAN  POU domain, class 3, tran...    31   0.90  
gi|27805750|sp|Q9GZN2|TGIF2_HUMAN  Homeobox protein TGIF2 (T...    31   0.90  
gi|2495300|sp|Q12837|PO42_HUMAN  POU domain, class 4, transc...    31   0.90  
gi|2495302|sp|Q15319|PO43_HUMAN  POU domain, class 4, transc...    31   0.90  
gi|2506534|sp|P20264|PO33_HUMAN  POU domain, class 3, transc...    31   0.90  
gi|2506535|sp|Q01851|PO4F1_HUMAN  POU domain, class 4, trans...    30   1.2   
gi|13124503|sp|O60315|SIP1_HUMAN  Zinc finger homeobox prote...    30   2.0   
gi|1345629|sp|P49335|PO3F4_HUMAN  POU domain, class 3, trans...    29   2.6   
gi|1709437|sp|Q03052|PO3F1_HUMAN  POU domain, class 3, trans...    29   3.4   
gi|8134548|sp|Q9UPM6|LHX61_HUMAN  LIM/homeobox protein Lhx6....    29   3.4   
gi|400659|sp|Q01860|PO5F1_HUMAN  POU domain, class 5, transc...    28   4.5   
gi|17368453|sp|Q13761|RUNX3_HUMAN  Runt-related transcriptio...    28   5.8   
gi|20978495|sp|Q96A47|ISL2_HUMAN  Insulin gene enhancer prot...    28   5.8   
gi|47606423|sp|P61371|ISL1_HUMAN  Insulin gene enhancer prot...    28   5.8   
gi|13124090|sp|Q9UBF2|CPG2_HUMAN  Coatomer gamma-2 subunit (...    28   5.8   
gi|51316484|sp|Q8N5B7|LSS5_HUMAN  LAG1 longevity assurance h...    28   5.8   
gi|50401058|sp|Q8IU89|LSS3_HUMAN  LAG1 longevity assurance h...    28   5.8   
gi|128370|sp|P26718|NKGD_HUMAN  NKG2-D type II integral memb...    28   7.6   
gi|50400700|sp|Q9Y3X0|CCD9_HUMAN  Coiled-coil domain contain...    28   7.6   
gi|3023207|sp|P78314|3BP2_HUMAN  SH3 domain-binding protein ...    28   7.6   
gi|27923959|sp|Q03001|BPA1_HUMAN  Bullous pemphigoid antigen...    27   10.0  


Alignments

>gi|13124743|sp|P31260|HXA10_HUMAN   Homeobox protein Hox-A10 (Hox-1H) (Hox-1.8) (PL)
          Length = 393

 Score =  386 bits (991), Expect = e-108
 Identities = 195/250 (78%), Positives = 195/250 (78%)

Query: 170 QNIKEESSYCLYDSADKCPKVSATAAELAPFPRGPPPDGCALGTSSGVPVPGYFRLSQAY 229
           QNIKEESSYCLYDSADKCPKVSATAAELAPFPRGPPPDGCALGTSSGVPVPGYFRLSQAY
Sbjct: 144 QNIKEESSYCLYDSADKCPKVSATAAELAPFPRGPPPDGCALGTSSGVPVPGYFRLSQAY 203

Query: 230 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXFDLPPALASGSADAARKERALDSPPPPTLAC 289
                                        FDLPPALASGSADAARKERALDSPPPPTLAC
Sbjct: 204 GTAKGYGSGGGGAQQLGAGPFPAQPPGRGFDLPPALASGSADAARKERALDSPPPPTLAC 263

Query: 290 GSGGGSQGDXXXXXXXXXXXXXXXXXXXXXXXXXXKDSLGNSKGENAANWLTAKSGRKKR 349
           GSGGGSQGD                          KDSLGNSKGENAANWLTAKSGRKKR
Sbjct: 264 GSGGGSQGDEEAHASSSAAEELSPAPSESSKASPEKDSLGNSKGENAANWLTAKSGRKKR 323

Query: 350 CPYTKHQTLELEKEFLFNMYLTRERRLEISRSVHLTDRQVKIWFQNRRMKLKKMNRENRI 409
           CPYTKHQTLELEKEFLFNMYLTRERRLEISRSVHLTDRQVKIWFQNRRMKLKKMNRENRI
Sbjct: 324 CPYTKHQTLELEKEFLFNMYLTRERRLEISRSVHLTDRQVKIWFQNRRMKLKKMNRENRI 383

Query: 410 RELTANFNFS 419
           RELTANFNFS
Sbjct: 384 RELTANFNFS 393



 Score = 66.6 bits (161), Expect = 1e-11
 Identities = 37/103 (35%), Positives = 56/103 (54%), Gaps = 1/103 (0%)

Query: 68  LQAPSAAGVPGDVLAKSSANVYHHPTPAVSSNFYSTLXXXXXXXXXXXXXXXXXXXXQRT 127
           L   S  G  GD  A +S++     +PA S +  ++                     +  
Sbjct: 261 LACGSGGGSQGDEEAHASSSAAEELSPAPSESSKAS-PEKDSLGNSKGENAANWLTAKSG 319

Query: 128 RKKRCPYTKYQIRELEREFFFSVYINKEKRLQLSRMLNLTDRQ 170
           RKKRCPYTK+Q  ELE+EF F++Y+ +E+RL++SR ++LTDRQ
Sbjct: 320 RKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISRSVHLTDRQ 362



>gi|13124744|sp|P31270|HXA11_HUMAN   Homeobox protein Hox-A11 (Hox-1I)
          Length = 313

 Score =  198 bits (503), Expect = 3e-51
 Identities = 93/98 (94%), Positives = 96/98 (97%)

Query: 7   YVLSTPSSRPMTYSYSSNLPQVQPVREVTFREYAIEPATKWHPRGNLAHCYSAEELVHRD 66
           ++  TPSSRPMTYSYSSNLPQVQPVREVTFREYAIEPATKWHPRGNLAHCYSAEELVHRD
Sbjct: 33  FLPQTPSSRPMTYSYSSNLPQVQPVREVTFREYAIEPATKWHPRGNLAHCYSAEELVHRD 92

Query: 67  CLQAPSAAGVPGDVLAKSSANVYHHPTPAVSSNFYSTL 104
           CLQAPSAAGVPGDVLAKSSANVYHHPTPAVSSNFYST+
Sbjct: 93  CLQAPSAAGVPGDVLAKSSANVYHHPTPAVSSNFYSTV 130



 Score =  108 bits (271), Expect = 3e-24
 Identities = 62/154 (40%), Positives = 84/154 (54%), Gaps = 12/154 (7%)

Query: 262 PPALASGSADAARKERALDSPPPPTLACGSGGGSQGDXXXXXXXXXXXXXXXXXXXXXXX 321
           PPA  + SA AA    A  +P   +   G GGG +                         
Sbjct: 169 PPAATATSAAAAAA--ATGAPATSSSDSGGGGGCRETAAAAEEKERRRRPESSSSPESSS 226

Query: 322 XXXKDSLGNSKGENAANWLTAKSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISRS 381
              +D  G S G+           RKKRCPYTK+Q  ELE+EF F++Y+ +E+RL++SR 
Sbjct: 227 GHTEDKAGGSSGQRT---------RKKRCPYTKYQIRELEREFFFSVYINKEKRLQLSRM 277

Query: 382 VHLTDRQVKIWFQNRRMKLKKMNRENRIRELTAN 415
           ++LTDRQVKIWFQNRRMK KK+NR+ R++  +AN
Sbjct: 278 LNLTDRQVKIWFQNRRMKEKKINRD-RLQYYSAN 310



 Score = 96.3 bits (238), Expect = 2e-20
 Identities = 46/46 (100%), Positives = 46/46 (100%)

Query: 125 QRTRKKRCPYTKYQIRELEREFFFSVYINKEKRLQLSRMLNLTDRQ 170
           QRTRKKRCPYTKYQIRELEREFFFSVYINKEKRLQLSRMLNLTDRQ
Sbjct: 239 QRTRKKRCPYTKYQIRELEREFFFSVYINKEKRLQLSRMLNLTDRQ 284



>gi|20141612|sp|Q9NYD6|HXC10_HUMAN   Homeobox protein Hox-C10
          Length = 342

 Score =  172 bits (437), Expect = 1e-43
 Identities = 111/257 (43%), Positives = 133/257 (51%), Gaps = 26/257 (10%)

Query: 171 NIKEESSYCLYDSADKCPKVSATAAELAPFPRGPPPDGCALGTSSGVPVPGYFRLSQAYX 230
           ++KEE+  C+Y SA+K  K    AA  +     P P+ C LG    VPVP Y+R S +Y 
Sbjct: 104 SVKEENVCCMY-SAEKRAKSGPEAALYSH----PLPESC-LGEHE-VPVPSYYRASPSYS 156

Query: 231 XXXXXXXXXXXXXXXXXXXXXXXXXXXXFDLPPALASGSADAARKERALDSPPPP----- 285
                                         L      G        ++    P P     
Sbjct: 157 ALDKTPHCSGANDFEAPFEQRASLNPRAEHLESPQLGGKVSFPETPKSDSQTPSPNEIKT 216

Query: 286 --TLACGSGGGSQGDXXXXXXXXXXXXXXXXXXXXXXXXXXKDSLGNSKGENAA-NWLTA 342
             +LA   G  S+ +                           ++    K EN   NWLTA
Sbjct: 217 EQSLAGPKGSPSESEKERAKAADSSPDTSD-----------NEAKEEIKAENTTGNWLTA 265

Query: 343 KSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISRSVHLTDRQVKIWFQNRRMKLKK 402
           KSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEIS++++LTDRQVKIWFQNRRMKLKK
Sbjct: 266 KSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISKTINLTDRQVKIWFQNRRMKLKK 325

Query: 403 MNRENRIRELTANFNFS 419
           MNRENRIRELT+NFNF+
Sbjct: 326 MNRENRIRELTSNFNFT 342



 Score = 66.6 bits (161), Expect = 1e-11
 Identities = 27/43 (62%), Positives = 38/43 (88%)

Query: 128 RKKRCPYTKYQIRELEREFFFSVYINKEKRLQLSRMLNLTDRQ 170
           RKKRCPYTK+Q  ELE+EF F++Y+ +E+RL++S+ +NLTDRQ
Sbjct: 269 RKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISKTINLTDRQ 311



>gi|123289|sp|P28358|HXD10_HUMAN   Homeobox protein Hox-D10 (Hox-4D) (Hox-4E)
          Length = 340

 Score =  172 bits (435), Expect = 3e-43
 Identities = 115/251 (45%), Positives = 134/251 (53%), Gaps = 18/251 (7%)

Query: 171 NIKEESSYCLYDSADKCPKVSATAAELAPFPRGPPPDGCALGTSSGVPVPGYFRLSQAYX 230
           NIKEES+ C+Y  +DK  K+   +AE+  + R   P+ C +     VPVP YFRLSQ Y 
Sbjct: 106 NIKEESNCCMY--SDKRNKL--ISAEVPSYQR-LVPESCPVENPE-VPVPRYFRLSQTYA 159

Query: 231 XXXXXXXXXXXXXXXXXXXXXXXXXXXXFDLPPALASGSADAARKERALDSPPPPTLACG 290
                                           P L++      +K     S   PT    
Sbjct: 160 TGKTQEYNNSPEGSSTVMLQLNPRGAAK----PQLSAAQLQMEKKMNEPVSGQEPTKV-- 213

Query: 291 SGGGSQGDXXXXXXXXXXXXXXXXXXXXXX-XXXXKDSLGNSKGEN-AANWLTAKSGRKK 348
               SQ +                           K+S    K +   +NWLTAKSGRKK
Sbjct: 214 ----SQVESPEAKGGLPEERSCLAEVSVSSPEVQEKESKEEIKSDTPTSNWLTAKSGRKK 269

Query: 349 RCPYTKHQTLELEKEFLFNMYLTRERRLEISRSVHLTDRQVKIWFQNRRMKLKKMNRENR 408
           RCPYTKHQTLELEKEFLFNMYLTRERRLEIS+SV+LTDRQVKIWFQNRRMKLKKM+RENR
Sbjct: 270 RCPYTKHQTLELEKEFLFNMYLTRERRLEISKSVNLTDRQVKIWFQNRRMKLKKMSRENR 329

Query: 409 IRELTANFNFS 419
           IRELTAN  FS
Sbjct: 330 IRELTANLTFS 340



 Score = 66.2 bits (160), Expect = 2e-11
 Identities = 27/43 (62%), Positives = 38/43 (88%)

Query: 128 RKKRCPYTKYQIRELEREFFFSVYINKEKRLQLSRMLNLTDRQ 170
           RKKRCPYTK+Q  ELE+EF F++Y+ +E+RL++S+ +NLTDRQ
Sbjct: 267 RKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISKSVNLTDRQ 309



>gi|6166219|sp|P31269|HXA9_HUMAN   Homeobox protein Hox-A9 (Hox-1G)
          Length = 272

 Score =  124 bits (312), Expect = 5e-29
 Identities = 56/71 (78%), Positives = 67/71 (94%)

Query: 336 AANWLTAKSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISRSVHLTDRQVKIWFQN 395
           AANWL A+S RKKRCPYTKHQTLELEKEFLFNMYLTR+RR E++R ++LT+RQVKIWFQN
Sbjct: 197 AANWLHARSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQN 256

Query: 396 RRMKLKKMNRE 406
           RRMK+KK+N++
Sbjct: 257 RRMKMKKINKD 267



 Score = 65.5 bits (158), Expect = 3e-11
 Identities = 26/44 (59%), Positives = 39/44 (88%)

Query: 127 TRKKRCPYTKYQIRELEREFFFSVYINKEKRLQLSRMLNLTDRQ 170
           TRKKRCPYTK+Q  ELE+EF F++Y+ +++R +++R+LNLT+RQ
Sbjct: 206 TRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQ 249



>gi|20141537|sp|P31274|HXC9_HUMAN   Homeobox protein Hox-C9 (Hox-3B)
          Length = 260

 Score =  124 bits (310), Expect = 8e-29
 Identities = 56/75 (74%), Positives = 68/75 (90%)

Query: 337 ANWLTAKSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISRSVHLTDRQVKIWFQNR 396
           ANW+ A+S RKKRCPYTK+QTLELEKEFLFNMYLTR+RR E++R ++LT+RQVKIWFQNR
Sbjct: 184 ANWIHARSTRKKRCPYTKYQTLELEKEFLFNMYLTRDRRYEVARVLNLTERQVKIWFQNR 243

Query: 397 RMKLKKMNRENRIRE 411
           RMK+KKMN+E   +E
Sbjct: 244 RMKMKKMNKEKTDKE 258



 Score = 67.0 bits (162), Expect = 1e-11
 Identities = 27/44 (61%), Positives = 39/44 (88%)

Query: 127 TRKKRCPYTKYQIRELEREFFFSVYINKEKRLQLSRMLNLTDRQ 170
           TRKKRCPYTKYQ  ELE+EF F++Y+ +++R +++R+LNLT+RQ
Sbjct: 192 TRKKRCPYTKYQTLELEKEFLFNMYLTRDRRYEVARVLNLTERQ 235



>gi|20141507|sp|P17482|HXB9_HUMAN   Homeobox protein Hox-B9 (Hox-2E) (Hox-2.5)
          Length = 250

 Score =  122 bits (306), Expect = 2e-28
 Identities = 55/71 (77%), Positives = 67/71 (94%)

Query: 336 AANWLTAKSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISRSVHLTDRQVKIWFQN 395
           +ANWL A+S RKKRCPYTK+QTLELEKEFLFNMYLTR+RR E++R ++L++RQVKIWFQN
Sbjct: 176 SANWLHARSSRKKRCPYTKYQTLELEKEFLFNMYLTRDRRHEVARLLNLSERQVKIWFQN 235

Query: 396 RRMKLKKMNRE 406
           RRMK+KKMN+E
Sbjct: 236 RRMKMKKMNKE 246



 Score = 63.5 bits (153), Expect = 1e-10
 Identities = 25/44 (56%), Positives = 39/44 (88%)

Query: 127 TRKKRCPYTKYQIRELEREFFFSVYINKEKRLQLSRMLNLTDRQ 170
           +RKKRCPYTKYQ  ELE+EF F++Y+ +++R +++R+LNL++RQ
Sbjct: 185 SRKKRCPYTKYQTLELEKEFLFNMYLTRDRRHEVARLLNLSERQ 228



>gi|123286|sp|P28356|HXD9_HUMAN   Homeobox protein Hox-D9 (Hox-4C) (Hox-5.2)
          Length = 342

 Score =  120 bits (302), Expect = 7e-28
 Identities = 54/70 (77%), Positives = 66/70 (94%)

Query: 337 ANWLTAKSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISRSVHLTDRQVKIWFQNR 396
           ANW+ A+S RKKRCPYTK+QTLELEKEFLFNMYLTR+RR E++R ++LT+RQVKIWFQNR
Sbjct: 267 ANWIHARSTRKKRCPYTKYQTLELEKEFLFNMYLTRDRRYEVARILNLTERQVKIWFQNR 326

Query: 397 RMKLKKMNRE 406
           RMK+KKM++E
Sbjct: 327 RMKMKKMSKE 336



 Score = 68.2 bits (165), Expect = 5e-12
 Identities = 32/66 (48%), Positives = 46/66 (69%), Gaps = 3/66 (4%)

Query: 127 TRKKRCPYTKYQIRELEREFFFSVYINKEKRLQLSRMLNLTDRQN---IKEESSYCLYDS 183
           TRKKRCPYTKYQ  ELE+EF F++Y+ +++R +++R+LNLT+RQ     +         S
Sbjct: 275 TRKKRCPYTKYQTLELEKEFLFNMYLTRDRRYEVARILNLTERQVKIWFQNRRMKMKKMS 334

Query: 184 ADKCPK 189
            +KCPK
Sbjct: 335 KEKCPK 340



>gi|12644203|sp|P31277|HXD11_HUMAN   Homeobox protein Hox-D11 (Hox-4F)
          Length = 338

 Score =  105 bits (261), Expect = 4e-23
 Identities = 48/87 (55%), Positives = 68/87 (78%), Gaps = 1/87 (1%)

Query: 329 GNSKGENAANWLTAKSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISRSVHLTDRQ 388
           G +  E +++ +  +  RKKRCPYTK+Q  ELE+EF FN+Y+ +E+RL++SR ++LTDRQ
Sbjct: 250 GEAGAEKSSSAVAPQRSRKKRCPYTKYQIRELEREFFFNVYINKEKRLQLSRMLNLTDRQ 309

Query: 389 VKIWFQNRRMKLKKMNRENRIRELTAN 415
           VKIWFQNRRMK KK+NR+ R++  T N
Sbjct: 310 VKIWFQNRRMKEKKLNRD-RLQYFTGN 335



 Score = 93.6 bits (231), Expect = 1e-19
 Identities = 44/46 (95%), Positives = 46/46 (100%)

Query: 125 QRTRKKRCPYTKYQIRELEREFFFSVYINKEKRLQLSRMLNLTDRQ 170
           QR+RKKRCPYTKYQIRELEREFFF+VYINKEKRLQLSRMLNLTDRQ
Sbjct: 264 QRSRKKRCPYTKYQIRELEREFFFNVYINKEKRLQLSRMLNLTDRQ 309



 Score = 52.0 bits (123), Expect = 4e-07
 Identities = 29/44 (65%), Positives = 32/44 (72%), Gaps = 2/44 (4%)

Query: 9  LSTPSSRPMTYSYSSNL-PQVQPVREVTFREYAIEPATKWHPRG 51
          LS PSS  MT+ YSSNL P VQPVREV FR+Y +E A KW  RG
Sbjct: 35 LSQPSSCQMTFPYSSNLAPHVQPVREVAFRDYGLERA-KWPYRG 77



>gi|3287858|sp|O43248|HXC11_HUMAN   Homeobox protein Hox-C11
          Length = 304

 Score = 95.1 bits (235), Expect = 4e-20
 Identities = 43/70 (61%), Positives = 59/70 (84%), Gaps = 1/70 (1%)

Query: 346 RKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISRSVHLTDRQVKIWFQNRRMKLKKMNR 405
           RKKRCPY+K Q  ELE+EF FN+Y+ +E+RL++SR ++LTDRQVKIWFQNRRMK KK++R
Sbjct: 233 RKKRCPYSKFQIRELEREFFFNVYINKEKRLQLSRMLNLTDRQVKIWFQNRRMKEKKLSR 292

Query: 406 ENRIRELTAN 415
           + R++  + N
Sbjct: 293 D-RLQYFSGN 301



 Score = 90.1 bits (222), Expect = 1e-18
 Identities = 42/45 (93%), Positives = 45/45 (100%)

Query: 126 RTRKKRCPYTKYQIRELEREFFFSVYINKEKRLQLSRMLNLTDRQ 170
           RTRKKRCPY+K+QIRELEREFFF+VYINKEKRLQLSRMLNLTDRQ
Sbjct: 231 RTRKKRCPYSKFQIRELEREFFFNVYINKEKRLQLSRMLNLTDRQ 275



 Score = 62.0 bits (149), Expect = 4e-10
 Identities = 36/96 (37%), Positives = 59/96 (61%), Gaps = 15/96 (15%)

Query: 14  SRPMTYSYSSNLPQVQPVREVTFREYAIEPATKWHPRGNLAHCY-SAEELVHRDCLQAPS 72
           SR ++Y YS+ +P   PVREV+   Y +EP+ KWH R + + CY +A+EL+HR+CL   +
Sbjct: 56  SRQISYPYSAQVP---PVREVS---YGLEPSGKWHHRNSYSSCYAAADELMHRECLPPST 109

Query: 73  AAGVPGDVLAKSSANV--YHHPTP--AVSSNFYSTL 104
                 ++L K+  +   +HHP+   A  + FYS++
Sbjct: 110 VT----EILMKNEGSYGGHHHPSAPHATPAGFYSSV 141



>gi|20141506|sp|P17481|HXB8_HUMAN   Homeobox protein Hox-B8 (Hox-2D) (Hox-2.4)
          Length = 243

 Score = 90.1 bits (222), Expect = 1e-18
 Identities = 43/68 (63%), Positives = 58/68 (85%), Gaps = 1/68 (1%)

Query: 342 AKSGRKK-RCPYTKHQTLELEKEFLFNMYLTRERRLEISRSVHLTDRQVKIWFQNRRMKL 400
           A +GR++ R  Y+++QTLELEKEFLFN YLTR+RR+E+S ++ LT+RQVKIWFQNRRMK 
Sbjct: 142 AAAGRRRGRQTYSRYQTLELEKEFLFNPYLTRKRRIEVSHALGLTERQVKIWFQNRRMKW 201

Query: 401 KKMNRENR 408
           KK N +++
Sbjct: 202 KKENNKDK 209



 Score = 46.6 bits (109), Expect = 2e-05
 Identities = 19/43 (44%), Positives = 32/43 (74%)

Query: 128 RKKRCPYTKYQIRELEREFFFSVYINKEKRLQLSRMLNLTDRQ 170
           R+ R  Y++YQ  ELE+EF F+ Y+ +++R+++S  L LT+RQ
Sbjct: 147 RRGRQTYSRYQTLELEKEFLFNPYLTRKRRIEVSHALGLTERQ 189



>gi|13124745|sp|P31273|HXC8_HUMAN   Homeobox protein Hox-C8 (Hox-3A)
          Length = 242

 Score = 89.7 bits (221), Expect = 2e-18
 Identities = 42/68 (61%), Positives = 55/68 (80%)

Query: 342 AKSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISRSVHLTDRQVKIWFQNRRMKLK 401
           A   R  R  Y+++QTLELEKEFLFN YLTR+RR+E+S ++ LT+RQVKIWFQNRRMK K
Sbjct: 146 APGRRSGRQTYSRYQTLELEKEFLFNPYLTRKRRIEVSHALGLTERQVKIWFQNRRMKWK 205

Query: 402 KMNRENRI 409
           K N ++++
Sbjct: 206 KENNKDKL 213



 Score = 45.8 bits (107), Expect = 3e-05
 Identities = 19/43 (44%), Positives = 31/43 (72%)

Query: 128 RKKRCPYTKYQIRELEREFFFSVYINKEKRLQLSRMLNLTDRQ 170
           R  R  Y++YQ  ELE+EF F+ Y+ +++R+++S  L LT+RQ
Sbjct: 150 RSGRQTYSRYQTLELEKEFLFNPYLTRKRRIEVSHALGLTERQ 192



>gi|400000|sp|P09067|HXB5_HUMAN   Homeobox protein Hox-B5 (Hox-2A) (HHO.C10) (HU-1)
          Length = 269

 Score = 89.7 bits (221), Expect = 2e-18
 Identities = 43/79 (54%), Positives = 57/79 (72%)

Query: 340 LTAKSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISRSVHLTDRQVKIWFQNRRMK 399
           +T   G++ R  YT++QTLELEKEF FN YLTR RR+EI+ ++ L++RQ+KIWFQNRRMK
Sbjct: 189 MTGPDGKRARTAYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLSERQIKIWFQNRRMK 248

Query: 400 LKKMNRENRIRELTANFNF 418
            KK N+   +   TA   F
Sbjct: 249 WKKDNKLKSMSLATAGSAF 267



 Score = 43.5 bits (101), Expect = 1e-04
 Identities = 17/43 (39%), Positives = 31/43 (72%)

Query: 128 RKKRCPYTKYQIRELEREFFFSVYINKEKRLQLSRMLNLTDRQ 170
           ++ R  YT+YQ  ELE+EF F+ Y+ + +R++++  L L++RQ
Sbjct: 195 KRARTAYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLSERQ 237



>gi|13124737|sp|P13378|HXD8_HUMAN   Homeobox protein Hox-D8 (Hox-4E) (Hox-5.4)
          Length = 290

 Score = 88.6 bits (218), Expect = 4e-18
 Identities = 42/67 (62%), Positives = 54/67 (80%)

Query: 342 AKSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISRSVHLTDRQVKIWFQNRRMKLK 401
           A   R+ R  Y++ QTLELEKEFLFN YLTR+RR+E+S ++ LT+RQVKIWFQNRRMK K
Sbjct: 194 APGRRRGRQTYSRFQTLELEKEFLFNPYLTRKRRIEVSHALALTERQVKIWFQNRRMKWK 253

Query: 402 KMNRENR 408
           K N +++
Sbjct: 254 KENNKDK 260



 Score = 44.3 bits (103), Expect = 8e-05
 Identities = 18/43 (41%), Positives = 32/43 (74%)

Query: 128 RKKRCPYTKYQIRELEREFFFSVYINKEKRLQLSRMLNLTDRQ 170
           R+ R  Y+++Q  ELE+EF F+ Y+ +++R+++S  L LT+RQ
Sbjct: 198 RRGRQTYSRFQTLELEKEFLFNPYLTRKRRIEVSHALALTERQ 240



>gi|17378385|sp|P31267|HXA6_HUMAN   Homeobox protein Hox-A6 (Hox-1B)
          Length = 233

 Score = 88.2 bits (217), Expect = 5e-18
 Identities = 41/61 (67%), Positives = 51/61 (83%)

Query: 345 GRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISRSVHLTDRQVKIWFQNRRMKLKKMN 404
           GR+ R  YT++QTLELEKEF FN YLTR RR+EI+ ++ LT+RQ+KIWFQNRRMK KK N
Sbjct: 155 GRRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIANALCLTERQIKIWFQNRRMKWKKEN 214

Query: 405 R 405
           +
Sbjct: 215 K 215



 Score = 45.1 bits (105), Expect = 5e-05
 Identities = 19/43 (44%), Positives = 31/43 (72%)

Query: 128 RKKRCPYTKYQIRELEREFFFSVYINKEKRLQLSRMLNLTDRQ 170
           R+ R  YT+YQ  ELE+EF F+ Y+ + +R++++  L LT+RQ
Sbjct: 156 RRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIANALCLTERQ 198



>gi|13124738|sp|P17509|HXB6_HUMAN   Homeobox protein Hox-B6 (Hox-2B) (Hox-2.2) (HU-2)
          Length = 224

 Score = 87.4 bits (215), Expect = 8e-18
 Identities = 42/71 (59%), Positives = 56/71 (78%)

Query: 344 SGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISRSVHLTDRQVKIWFQNRRMKLKKM 403
           SGR+ R  YT++QTLELEKEF +N YLTR RR+EI+ ++ LT+RQ+KIWFQNRRMK KK 
Sbjct: 145 SGRRGRQTYTRYQTLELEKEFHYNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKE 204

Query: 404 NRENRIRELTA 414
           ++     +L+A
Sbjct: 205 SKLLSASQLSA 215



 Score = 43.9 bits (102), Expect = 1e-04
 Identities = 18/43 (41%), Positives = 31/43 (72%)

Query: 128 RKKRCPYTKYQIRELEREFFFSVYINKEKRLQLSRMLNLTDRQ 170
           R+ R  YT+YQ  ELE+EF ++ Y+ + +R++++  L LT+RQ
Sbjct: 147 RRGRQTYTRYQTLELEKEFHYNRYLTRRRRIEIAHALCLTERQ 189



>gi|52788238|sp|P20719|HXA5_HUMAN   Homeobox protein Hox-A5 (Hox-1C)
          Length = 270

 Score = 86.3 bits (212), Expect = 2e-17
 Identities = 39/61 (63%), Positives = 51/61 (83%)

Query: 345 GRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISRSVHLTDRQVKIWFQNRRMKLKKMN 404
           G++ R  YT++QTLELEKEF FN YLTR RR+EI+ ++ L++RQ+KIWFQNRRMK KK N
Sbjct: 195 GKRARTAYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLSERQIKIWFQNRRMKWKKDN 254

Query: 405 R 405
           +
Sbjct: 255 K 255



 Score = 43.5 bits (101), Expect = 1e-04
 Identities = 17/43 (39%), Positives = 31/43 (72%)

Query: 128 RKKRCPYTKYQIRELEREFFFSVYINKEKRLQLSRMLNLTDRQ 170
           ++ R  YT+YQ  ELE+EF F+ Y+ + +R++++  L L++RQ
Sbjct: 196 KRARTAYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLSERQ 238



>gi|232262|sp|Q00444|HXC5_HUMAN   Homeobox protein Hox-C5 (Hox-3D) (CP11)
          Length = 222

 Score = 84.3 bits (207), Expect = 7e-17
 Identities = 38/58 (65%), Positives = 48/58 (82%)

Query: 345 GRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISRSVHLTDRQVKIWFQNRRMKLKK 402
           G++ R  YT++QTLELEKEF FN YLTR RR+EI+ ++ L +RQ+KIWFQNRRMK KK
Sbjct: 155 GKRSRTSYTRYQTLELEKEFHFNRYLTRRRRIEIANNLCLNERQIKIWFQNRRMKWKK 212



 Score = 43.1 bits (100), Expect = 2e-04
 Identities = 17/43 (39%), Positives = 30/43 (69%)

Query: 128 RKKRCPYTKYQIRELEREFFFSVYINKEKRLQLSRMLNLTDRQ 170
           ++ R  YT+YQ  ELE+EF F+ Y+ + +R++++  L L +RQ
Sbjct: 156 KRSRTSYTRYQTLELEKEFHFNRYLTRRRRIEIANNLCLNERQ 198



>gi|3915721|sp|P31268|HXA7_HUMAN   Homeobox protein Hox-A7 (Hox-1A) (Hox 1.1)
          Length = 230

 Score = 84.0 bits (206), Expect = 9e-17
 Identities = 40/70 (57%), Positives = 54/70 (77%), Gaps = 2/70 (2%)

Query: 339 WLTAKSGRKKRC--PYTKHQTLELEKEFLFNMYLTRERRLEISRSVHLTDRQVKIWFQNR 396
           W+ +    +KR    YT++QTLELEKEF FN YLTR RR+EI+ ++ LT+RQ+KIWFQNR
Sbjct: 122 WMRSSGPDRKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNR 181

Query: 397 RMKLKKMNRE 406
           RMK KK +++
Sbjct: 182 RMKWKKEHKD 191



 Score = 43.9 bits (102), Expect = 1e-04
 Identities = 18/43 (41%), Positives = 31/43 (72%)

Query: 128 RKKRCPYTKYQIRELEREFFFSVYINKEKRLQLSRMLNLTDRQ 170
           ++ R  YT+YQ  ELE+EF F+ Y+ + +R++++  L LT+RQ
Sbjct: 131 KRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQ 173



>gi|123255|sp|P09629|HXB7_HUMAN   Homeobox protein Hox-B7 (Hox-2C) (HHO.C1)
          Length = 217

 Score = 84.0 bits (206), Expect = 9e-17
 Identities = 40/69 (57%), Positives = 53/69 (76%), Gaps = 2/69 (2%)

Query: 339 WLTAKSGRKKRC--PYTKHQTLELEKEFLFNMYLTRERRLEISRSVHLTDRQVKIWFQNR 396
           W+ +    +KR    YT++QTLELEKEF +N YLTR RR+EI+ ++ LT+RQ+KIWFQNR
Sbjct: 129 WMRSSGTDRKRGRQTYTRYQTLELEKEFHYNRYLTRRRRIEIAHTLCLTERQIKIWFQNR 188

Query: 397 RMKLKKMNR 405
           RMK KK N+
Sbjct: 189 RMKWKKENK 197



 Score = 42.7 bits (99), Expect = 2e-04
 Identities = 17/43 (39%), Positives = 31/43 (72%)

Query: 128 RKKRCPYTKYQIRELEREFFFSVYINKEKRLQLSRMLNLTDRQ 170
           ++ R  YT+YQ  ELE+EF ++ Y+ + +R++++  L LT+RQ
Sbjct: 138 KRGRQTYTRYQTLELEKEFHYNRYLTRRRRIEIAHTLCLTERQ 180



>gi|123279|sp|P09017|HXC4_HUMAN   Homeobox protein Hox-C4 (Hox-3E) (CP19)
          Length = 264

 Score = 81.3 bits (199), Expect = 6e-16
 Identities = 37/60 (61%), Positives = 48/60 (80%)

Query: 346 RKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISRSVHLTDRQVKIWFQNRRMKLKKMNR 405
           ++ R  YT+ Q LELEKEF +N YLTR RR+EI+ S+ L++RQ+KIWFQNRRMK KK +R
Sbjct: 157 KRSRAAYTRQQVLELEKEFHYNRYLTRRRRIEIAHSLCLSERQIKIWFQNRRMKWKKDHR 216



 Score = 41.6 bits (96), Expect = 5e-04
 Identities = 15/43 (34%), Positives = 31/43 (72%)

Query: 128 RKKRCPYTKYQIRELEREFFFSVYINKEKRLQLSRMLNLTDRQ 170
           ++ R  YT+ Q+ ELE+EF ++ Y+ + +R++++  L L++RQ
Sbjct: 157 KRSRAAYTRQQVLELEKEFHYNRYLTRRRRIEIAHSLCLSERQ 199



>gi|20141493|sp|P09630|HXC6_HUMAN   Homeobox protein Hox-C6 (Hox-3C) (HHO.C8) (CP25)
          Length = 235

 Score = 81.3 bits (199), Expect = 6e-16
 Identities = 38/57 (66%), Positives = 48/57 (84%)

Query: 346 RKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISRSVHLTDRQVKIWFQNRRMKLKK 402
           R+ R  Y+++QTLELEKEF FN YLTR RR+EI+ ++ LT+RQ+KIWFQNRRMK KK
Sbjct: 142 RRGRQIYSRYQTLELEKEFHFNRYLTRRRRIEIANALCLTERQIKIWFQNRRMKWKK 198



 Score = 42.7 bits (99), Expect = 2e-04
 Identities = 18/43 (41%), Positives = 31/43 (72%)

Query: 128 RKKRCPYTKYQIRELEREFFFSVYINKEKRLQLSRMLNLTDRQ 170
           R+ R  Y++YQ  ELE+EF F+ Y+ + +R++++  L LT+RQ
Sbjct: 142 RRGRQIYSRYQTLELEKEFHFNRYLTRRRRIEIANALCLTERQ 184



>gi|20141491|sp|P09016|HXD4_HUMAN   Homeobox protein Hox-D4 (Hox-4B) (Hox-5.1) (HHO.C13)
          Length = 255

 Score = 80.1 bits (196), Expect = 1e-15
 Identities = 37/62 (59%), Positives = 47/62 (75%)

Query: 341 TAKSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISRSVHLTDRQVKIWFQNRRMKL 400
           T    ++ R  YT+ Q LELEKEF FN YLTR RR+EI+ ++ L++RQ+KIWFQNRRMK 
Sbjct: 150 TGGEPKRSRTAYTRQQVLELEKEFHFNRYLTRRRRIEIAHTLCLSERQIKIWFQNRRMKW 209

Query: 401 KK 402
           KK
Sbjct: 210 KK 211



 Score = 42.4 bits (98), Expect = 3e-04
 Identities = 16/43 (37%), Positives = 31/43 (72%)

Query: 128 RKKRCPYTKYQIRELEREFFFSVYINKEKRLQLSRMLNLTDRQ 170
           ++ R  YT+ Q+ ELE+EF F+ Y+ + +R++++  L L++RQ
Sbjct: 155 KRSRTAYTRQQVLELEKEFHFNRYLTRRRRIEIAHTLCLSERQ 197



>gi|6166217|sp|Q00056|HXA4_HUMAN   Homeobox protein Hox-A4 (Hox-1D) (Hox-1.4)
          Length = 320

 Score = 80.1 bits (196), Expect = 1e-15
 Identities = 37/57 (64%), Positives = 46/57 (80%)

Query: 346 RKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISRSVHLTDRQVKIWFQNRRMKLKK 402
           ++ R  YT+ Q LELEKEF FN YLTR RR+EI+ ++ L++RQVKIWFQNRRMK KK
Sbjct: 216 KRSRTAYTRQQVLELEKEFHFNRYLTRRRRIEIAHTLCLSERQVKIWFQNRRMKWKK 272



 Score = 45.8 bits (107), Expect = 3e-05
 Identities = 23/79 (29%), Positives = 43/79 (54%), Gaps = 1/79 (1%)

Query: 128 RKKRCPYTKYQIRELEREFFFSVYINKEKRLQLSRMLNLTDRQ-NIKEESSYCLYDSADK 186
           ++ R  YT+ Q+ ELE+EF F+ Y+ + +R++++  L L++RQ  I  ++    +    K
Sbjct: 216 KRSRTAYTRQQVLELEKEFHFNRYLTRRRRIEIAHTLCLSERQVKIWFQNRRMKWKKDHK 275

Query: 187 CPKVSATAAELAPFPRGPP 205
            P     ++  A    GPP
Sbjct: 276 LPNTKMRSSNSASASAGPP 294



>gi|20141538|sp|P31275|HXC12_HUMAN   Homeobox protein Hox-C12 (Hox-3F)
          Length = 282

 Score = 79.0 bits (193), Expect = 3e-15
 Identities = 40/76 (52%), Positives = 52/76 (68%), Gaps = 1/76 (1%)

Query: 329 GNSKGENAANWLTAKS-GRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISRSVHLTDR 387
           G     + A W    S  RKKR PY+K Q  ELE EFL N ++TR+RR E+S  ++L+D+
Sbjct: 197 GGGLSASGAPWYPINSRSRKKRKPYSKLQLAELEGEFLVNEFITRQRRRELSDRLNLSDQ 256

Query: 388 QVKIWFQNRRMKLKKM 403
           QVKIWFQNRRMK K++
Sbjct: 257 QVKIWFQNRRMKKKRL 272



 Score = 50.4 bits (119), Expect = 1e-06
 Identities = 23/45 (51%), Positives = 34/45 (75%)

Query: 126 RTRKKRCPYTKYQIRELEREFFFSVYINKEKRLQLSRMLNLTDRQ 170
           R+RKKR PY+K Q+ ELE EF  + +I +++R +LS  LNL+D+Q
Sbjct: 213 RSRKKRKPYSKLQLAELEGEFLVNEFITRQRRRELSDRLNLSDQQ 257



>gi|17378648|sp|Q9GZZ0|HXD1_HUMAN   Homeobox protein Hox-D1
          Length = 328

 Score = 78.2 bits (191), Expect = 5e-15
 Identities = 41/76 (53%), Positives = 47/76 (61%)

Query: 331 SKGENAANWLTAKSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISRSVHLTDRQVK 390
           SK    A +  A      R  ++  Q  ELEKEF FN YLTR RR+EI+  +HL D QVK
Sbjct: 215 SKKGKLAEYGAASPSSAIRTNFSTKQLTELEKEFHFNKYLTRARRIEIANCLHLNDTQVK 274

Query: 391 IWFQNRRMKLKKMNRE 406
           IWFQNRRMK KK  RE
Sbjct: 275 IWFQNRRMKQKKRERE 290



 Score = 36.2 bits (82), Expect = 0.021
 Identities = 14/40 (35%), Positives = 27/40 (67%)

Query: 131 RCPYTKYQIRELEREFFFSVYINKEKRLQLSRMLNLTDRQ 170
           R  ++  Q+ ELE+EF F+ Y+ + +R++++  L+L D Q
Sbjct: 233 RTNFSTKQLTELEKEFHFNKYLTRARRIEIANCLHLNDTQ 272



>gi|547692|sp|P17483|HXB4_HUMAN   Homeobox protein Hox-B4 (Hox-2F) (Hox-2.6)
          Length = 251

 Score = 78.2 bits (191), Expect = 5e-15
 Identities = 35/57 (61%), Positives = 46/57 (80%)

Query: 346 RKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISRSVHLTDRQVKIWFQNRRMKLKK 402
           ++ R  YT+ Q LELEKEF +N YLTR RR+EI+ ++ L++RQ+KIWFQNRRMK KK
Sbjct: 163 KRSRTAYTRQQVLELEKEFHYNRYLTRRRRVEIAHALCLSERQIKIWFQNRRMKWKK 219



 Score = 43.1 bits (100), Expect = 2e-04
 Identities = 24/84 (28%), Positives = 45/84 (53%), Gaps = 3/84 (3%)

Query: 128 RKKRCPYTKYQIRELEREFFFSVYINKEKRLQLSRMLNLTDRQ-NIKEESSYCLYDSADK 186
           ++ R  YT+ Q+ ELE+EF ++ Y+ + +R++++  L L++RQ  I  ++    +    K
Sbjct: 163 KRSRTAYTRQQVLELEKEFHYNRYLTRRRRVEIAHALCLSERQIKIWFQNRRMKWKKDHK 222

Query: 187 CPKVSATAAELAPFPRGPP--PDG 208
            P     +   A    GPP  P+G
Sbjct: 223 LPNTKIRSGGAAGSAGGPPGRPNG 246



>gi|1708540|sp|P52945|IPF1_HUMAN   Insulin promoter factor-1 (IPF-1) (Pancreas/duodenum homeobox-1)
           (PDX-1) (Islet/duodenum homeobox-1) (IDX-1)
           (Somatostatin transactivating factor-1) (STF-1) (Insulin
           upstream factor-1) (IUF-1) (Glucose-sensitive factor)
           (GSF)
          Length = 283

 Score = 77.4 bits (189), Expect = 8e-15
 Identities = 35/66 (53%), Positives = 49/66 (74%)

Query: 343 KSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISRSVHLTDRQVKIWFQNRRMKLKK 402
           +  ++ R  YT+ Q LELEKEFLFN Y++R RR+E++  ++LT+R +KIWFQNRRMK KK
Sbjct: 144 EENKRTRTAYTRAQLLELEKEFLFNKYISRPRRVELAVMLNLTERHIKIWFQNRRMKWKK 203

Query: 403 MNRENR 408
              + R
Sbjct: 204 EEDKKR 209



 Score = 48.1 bits (113), Expect = 5e-06
 Identities = 20/45 (44%), Positives = 34/45 (75%)

Query: 125 QRTRKKRCPYTKYQIRELEREFFFSVYINKEKRLQLSRMLNLTDR 169
           +  ++ R  YT+ Q+ ELE+EF F+ YI++ +R++L+ MLNLT+R
Sbjct: 144 EENKRTRTAYTRAQLLELEKEFLFNKYISRPRRVELAVMLNLTER 188



>gi|12644227|sp|P35452|HXD12_HUMAN   Homeobox protein Hox-D12 (Hox-4H)
          Length = 275

 Score = 77.4 bits (189), Expect = 8e-15
 Identities = 35/58 (60%), Positives = 46/58 (79%)

Query: 346 RKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISRSVHLTDRQVKIWFQNRRMKLKKM 403
           RKKR PYTK Q  ELE EFL N ++ R++R E+S  ++L+D+QVKIWFQNRRMK K++
Sbjct: 208 RKKRKPYTKQQIAELENEFLVNEFINRQKRKELSNRLNLSDQQVKIWFQNRRMKKKRV 265



 Score = 55.5 bits (132), Expect = 3e-08
 Identities = 26/43 (60%), Positives = 33/43 (76%)

Query: 128 RKKRCPYTKYQIRELEREFFFSVYINKEKRLQLSRMLNLTDRQ 170
           RKKR PYTK QI ELE EF  + +IN++KR +LS  LNL+D+Q
Sbjct: 208 RKKRKPYTKQQIAELENEFLVNEFINRQKRKELSNRLNLSDQQ 250



>gi|6166222|sp|P31249|HXD3_HUMAN   Homeobox protein Hox-D3 (Hox-4A)
          Length = 416

 Score = 75.9 bits (185), Expect = 2e-14
 Identities = 50/134 (37%), Positives = 64/134 (47%), Gaps = 16/134 (11%)

Query: 282 PPPPTLACGS----GGGSQGDXXXXXXXXXXXXXXXXXXXXXXXXXXKDSLGNSKGENAA 337
           PPPPTL   S    GGG                              K+S  NSK +N+ 
Sbjct: 105 PPPPTLPPSSPTNPGGGVPAKKPKGGPNASSSSATISKQIFPWM---KESRQNSKQKNSC 161

Query: 338 NWL---------TAKSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISRSVHLTDRQ 388
                          + ++ R  YT  Q +ELEKEF FN YL R RR+E++  ++LT+RQ
Sbjct: 162 ATAGESCEDKSPPGPASKRVRTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQ 221

Query: 389 VKIWFQNRRMKLKK 402
           +KIWFQNRRMK KK
Sbjct: 222 IKIWFQNRRMKYKK 235



 Score = 48.9 bits (115), Expect = 3e-06
 Identities = 34/99 (34%), Positives = 55/99 (55%), Gaps = 5/99 (5%)

Query: 127 TRKKRCPYTKYQIRELEREFFFSVYINKEKRLQLSRMLNLTDRQ-NIKEESSYCLYDSAD 185
           +++ R  YT  Q+ ELE+EF F+ Y+ + +R++++ +LNLT+RQ  I  ++    Y    
Sbjct: 178 SKRVRTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKDQ 237

Query: 186 KCPKVSATAAELAPFPRGPPPDGCALGTS-SG--VPVPG 221
           K   +  + A  +P  R PP  G A   + SG   PVPG
Sbjct: 238 KAKGILHSPASQSP-ERSPPLGGAAGHVAYSGQLPPVPG 275



>gi|50403792|sp|Q92826|HXB13_HUMAN   Homeobox protein Hox-B13
          Length = 284

 Score = 75.9 bits (185), Expect = 2e-14
 Identities = 34/79 (43%), Positives = 55/79 (69%)

Query: 325 KDSLGNSKGENAANWLTAKSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISRSVHL 384
           K +  +S G++  +    + GRKKR PY+K Q  ELE+E+  N ++T+++R +IS +  L
Sbjct: 196 KAAFADSSGQHPPDACAFRRGRKKRIPYSKGQLRELEREYAANKFITKDKRRKISAATSL 255

Query: 385 TDRQVKIWFQNRRMKLKKM 403
           ++RQ+ IWFQNRR+K KK+
Sbjct: 256 SERQITIWFQNRRVKEKKV 274



 Score = 50.1 bits (118), Expect = 1e-06
 Identities = 23/46 (50%), Positives = 35/46 (76%)

Query: 125 QRTRKKRCPYTKYQIRELEREFFFSVYINKEKRLQLSRMLNLTDRQ 170
           +R RKKR PY+K Q+RELERE+  + +I K+KR ++S   +L++RQ
Sbjct: 214 RRGRKKRIPYSKGQLRELEREYAANKFITKDKRRKISAATSLSERQ 259



>gi|6016293|sp|O43365|HXA3_HUMAN   Homeobox protein Hox-A3 (Hox-1E)
          Length = 443

 Score = 75.9 bits (185), Expect = 2e-14
 Identities = 35/59 (59%), Positives = 45/59 (76%)

Query: 344 SGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISRSVHLTDRQVKIWFQNRRMKLKK 402
           S ++ R  YT  Q +ELEKEF FN YL R RR+E++  ++LT+RQ+KIWFQNRRMK KK
Sbjct: 190 SSKRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKK 248



 Score = 44.7 bits (104), Expect = 6e-05
 Identities = 18/44 (40%), Positives = 33/44 (75%)

Query: 127 TRKKRCPYTKYQIRELEREFFFSVYINKEKRLQLSRMLNLTDRQ 170
           +++ R  YT  Q+ ELE+EF F+ Y+ + +R++++ +LNLT+RQ
Sbjct: 191 SKRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQ 234



>gi|6016292|sp|O43364|HXA2_HUMAN   Homeobox protein Hox-A2
          Length = 376

 Score = 75.1 bits (183), Expect = 4e-14
 Identities = 39/68 (57%), Positives = 48/68 (70%), Gaps = 2/68 (2%)

Query: 346 RKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISRSVHLTDRQVKIWFQNRRMKLKKMN- 404
           R+ R  YT  Q LELEKEF FN YL R RR+EI+  + LT+RQVK+WFQNRRMK K+   
Sbjct: 144 RRLRTAYTNTQLLELEKEFHFNKYLCRPRRVEIAALLDLTERQVKVWFQNRRMKHKRQTQ 203

Query: 405 -RENRIRE 411
            +EN+  E
Sbjct: 204 CKENQNSE 211



 Score = 43.9 bits (102), Expect = 1e-04
 Identities = 18/44 (40%), Positives = 33/44 (75%)

Query: 127 TRKKRCPYTKYQIRELEREFFFSVYINKEKRLQLSRMLNLTDRQ 170
           +R+ R  YT  Q+ ELE+EF F+ Y+ + +R++++ +L+LT+RQ
Sbjct: 143 SRRLRTAYTNTQLLELEKEFHFNKYLCRPRRVEIAALLDLTERQ 186



>gi|123270|sp|P14652|HXB2_HUMAN   Homeobox protein Hox-B2 (Hox-2H) (Hox-2.8) (K8)
          Length = 356

 Score = 74.7 bits (182), Expect = 5e-14
 Identities = 36/60 (60%), Positives = 44/60 (73%)

Query: 346 RKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISRSVHLTDRQVKIWFQNRRMKLKKMNR 405
           R+ R  YT  Q LELEKEF FN YL R RR+EI+  + LT+RQVK+WFQNRRMK K+  +
Sbjct: 144 RRLRTAYTNTQLLELEKEFHFNKYLCRPRRVEIAALLDLTERQVKVWFQNRRMKHKRQTQ 203



 Score = 43.5 bits (101), Expect = 1e-04
 Identities = 18/43 (41%), Positives = 32/43 (74%)

Query: 128 RKKRCPYTKYQIRELEREFFFSVYINKEKRLQLSRMLNLTDRQ 170
           R+ R  YT  Q+ ELE+EF F+ Y+ + +R++++ +L+LT+RQ
Sbjct: 144 RRLRTAYTNTQLLELEKEFHFNKYLCRPRRVEIAALLDLTERQ 186



>gi|20141539|sp|P31276|HXC13_HUMAN   Homeobox protein Hox-C13 (Hox-3G)
          Length = 330

 Score = 74.3 bits (181), Expect = 7e-14
 Identities = 35/70 (50%), Positives = 51/70 (72%)

Query: 343 KSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISRSVHLTDRQVKIWFQNRRMKLKK 402
           + GRKKR PYTK Q  ELEKE+  + ++T+E+R  IS + +L++RQV IWFQNRR+K KK
Sbjct: 258 RRGRKKRVPYTKVQLKELEKEYAASKFITKEKRRRISATTNLSERQVTIWFQNRRVKEKK 317

Query: 403 MNRENRIREL 412
           +  +++   L
Sbjct: 318 VVSKSKAPHL 327



 Score = 54.3 bits (129), Expect = 8e-08
 Identities = 25/46 (54%), Positives = 35/46 (76%)

Query: 125 QRTRKKRCPYTKYQIRELEREFFFSVYINKEKRLQLSRMLNLTDRQ 170
           +R RKKR PYTK Q++ELE+E+  S +I KEKR ++S   NL++RQ
Sbjct: 258 RRGRKKRVPYTKVQLKELEKEYAASKFITKEKRRRISATTNLSERQ 303



>gi|6166216|sp|P49639|HXA1_HUMAN   Homeobox protein Hox-A1 (Hox-1F)
          Length = 335

 Score = 73.6 bits (179), Expect = 1e-13
 Identities = 36/58 (62%), Positives = 42/58 (72%)

Query: 349 RCPYTKHQTLELEKEFLFNMYLTRERRLEISRSVHLTDRQVKIWFQNRRMKLKKMNRE 406
           R  +T  Q  ELEKEF FN YLTR RR+EI+ S+ L + QVKIWFQNRRMK KK  +E
Sbjct: 233 RTNFTTKQLTELEKEFHFNKYLTRARRVEIAASLQLNETQVKIWFQNRRMKQKKREKE 290



 Score = 35.0 bits (79), Expect = 0.048
 Identities = 14/40 (35%), Positives = 26/40 (65%)

Query: 131 RCPYTKYQIRELEREFFFSVYINKEKRLQLSRMLNLTDRQ 170
           R  +T  Q+ ELE+EF F+ Y+ + +R++++  L L + Q
Sbjct: 233 RTNFTTKQLTELEKEFHFNKYLTRARRVEIAASLQLNETQ 272



>gi|2828197|sp|P31271|HXA13_HUMAN   Homeobox protein Hox-A13 (Hox-1J)
          Length = 388

 Score = 73.6 bits (179), Expect = 1e-13
 Identities = 33/61 (54%), Positives = 47/61 (77%)

Query: 343 KSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISRSVHLTDRQVKIWFQNRRMKLKK 402
           + GRKKR PYTK Q  ELE+E+  N ++T+++R  IS + +L++RQV IWFQNRR+K KK
Sbjct: 320 RRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 379

Query: 403 M 403
           +
Sbjct: 380 V 380



 Score = 53.1 bits (126), Expect = 2e-07
 Identities = 24/46 (52%), Positives = 35/46 (76%)

Query: 125 QRTRKKRCPYTKYQIRELEREFFFSVYINKEKRLQLSRMLNLTDRQ 170
           +R RKKR PYTK Q++ELERE+  + +I K+KR ++S   NL++RQ
Sbjct: 320 RRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQ 365



>gi|123268|sp|P14651|HXB3_HUMAN   Homeobox protein Hox-B3 (Hox-2G) (Hox-2.7)
          Length = 431

 Score = 73.2 bits (178), Expect = 2e-13
 Identities = 33/59 (55%), Positives = 45/59 (76%)

Query: 344 SGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISRSVHLTDRQVKIWFQNRRMKLKK 402
           + ++ R  YT  Q +ELEKEF FN YL R RR+E++  ++L++RQ+KIWFQNRRMK KK
Sbjct: 187 ASKRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLSERQIKIWFQNRRMKYKK 245



 Score = 47.4 bits (111), Expect = 9e-06
 Identities = 25/81 (30%), Positives = 48/81 (59%), Gaps = 3/81 (3%)

Query: 127 TRKKRCPYTKYQIRELEREFFFSVYINKEKRLQLSRMLNLTDRQ-NIKEESSYCLYDSAD 185
           +++ R  YT  Q+ ELE+EF F+ Y+ + +R++++ +LNL++RQ  I  ++    Y    
Sbjct: 188 SKRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLSERQIKIWFQNRRMKYKKDQ 247

Query: 186 KCPKVSATAAELAPFPRGPPP 206
           K   +++++    P P G PP
Sbjct: 248 KAKGLASSSG--GPSPAGSPP 266



>gi|123271|sp|P14653|HXB1_HUMAN   Homeobox protein Hox-B1 (Hox-2I)
          Length = 301

 Score = 72.4 bits (176), Expect = 3e-13
 Identities = 35/58 (60%), Positives = 42/58 (72%)

Query: 349 RCPYTKHQTLELEKEFLFNMYLTRERRLEISRSVHLTDRQVKIWFQNRRMKLKKMNRE 406
           R  +T  Q  ELEKEF FN YL+R RR+EI+ ++ L + QVKIWFQNRRMK KK  RE
Sbjct: 207 RTNFTTRQLTELEKEFHFNKYLSRARRVEIAATLELNETQVKIWFQNRRMKQKKRERE 264



 Score = 35.4 bits (80), Expect = 0.037
 Identities = 14/40 (35%), Positives = 27/40 (67%)

Query: 131 RCPYTKYQIRELEREFFFSVYINKEKRLQLSRMLNLTDRQ 170
           R  +T  Q+ ELE+EF F+ Y+++ +R++++  L L + Q
Sbjct: 207 RTNFTTRQLTELEKEFHFNKYLSRARRVEIAATLELNETQ 246



>gi|1345720|sp|P47902|CDX1_HUMAN   Homeobox protein CDX-1 (Caudal-type homeobox protein 1)
          Length = 265

 Score = 72.4 bits (176), Expect = 3e-13
 Identities = 33/62 (53%), Positives = 47/62 (75%)

Query: 347 KKRCPYTKHQTLELEKEFLFNMYLTRERRLEISRSVHLTDRQVKIWFQNRRMKLKKMNRE 406
           K R  YT HQ LELEKEF ++ Y+T  R+ E++ ++ LT+RQVKIWFQNRR K +K+N++
Sbjct: 156 KYRVVYTDHQRLELEKEFHYSRYITIRRKSELAANLGLTERQVKIWFQNRRAKERKVNKK 215

Query: 407 NR 408
            +
Sbjct: 216 KQ 217



 Score = 41.6 bits (96), Expect = 5e-04
 Identities = 35/112 (31%), Positives = 50/112 (44%), Gaps = 14/112 (12%)

Query: 126 RTRKK-RCPYTKYQIRELEREFFFSVYINKEKRLQLSRMLNLTDRQ-------NIKEESS 177
           RT+ K R  YT +Q  ELE+EF +S YI   ++ +L+  L LT+RQ          +E  
Sbjct: 152 RTKDKYRVVYTDHQRLELEKEFHYSRYITIRRKSELAANLGLTERQVKIWFQNRRAKERK 211

Query: 178 YCLYDSADKCPKVSATAAELAPFPRGP------PPDGCALGTSSGVPVPGYF 223
                   + P     A ++   P GP      P +   L TSS +PV   F
Sbjct: 212 VNKKKQQQQQPPQPPMAHDITATPAGPSLGGLCPSNTSLLATSSPMPVKEEF 263



>gi|2851475|sp|P35453|HXD13_HUMAN   Homeobox protein Hox-D13 (Hox-4I)
          Length = 335

 Score = 72.4 bits (176), Expect = 3e-13
 Identities = 35/79 (44%), Positives = 49/79 (62%)

Query: 325 KDSLGNSKGENAANWLTAKSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISRSVHL 384
           K S       N  +    + GRKKR PYTK Q  ELE E+  N ++ +++R  IS + +L
Sbjct: 248 KSSFPGDVALNQPDMCVYRRGRKKRVPYTKLQLKELENEYAINKFINKDKRRRISAATNL 307

Query: 385 TDRQVKIWFQNRRMKLKKM 403
           ++RQV IWFQNRR+K KK+
Sbjct: 308 SERQVTIWFQNRRVKDKKI 326



 Score = 54.3 bits (129), Expect = 8e-08
 Identities = 24/46 (52%), Positives = 35/46 (76%)

Query: 125 QRTRKKRCPYTKYQIRELEREFFFSVYINKEKRLQLSRMLNLTDRQ 170
           +R RKKR PYTK Q++ELE E+  + +INK+KR ++S   NL++RQ
Sbjct: 266 RRGRKKRVPYTKLQLKELENEYAINKFINKDKRRRISAATNLSERQ 311



>gi|1709079|sp|P50222|MEOX2_HUMAN   Homeobox protein MOX-2 (Mesenchyme homeobox 2) (Growth
           arrest-specific homeobox)
          Length = 303

 Score = 71.6 bits (174), Expect = 5e-13
 Identities = 48/142 (33%), Positives = 65/142 (45%), Gaps = 13/142 (9%)

Query: 262 PPALASGSADAARKERALDSPPPPTLACGSGGGSQGDXXXXXXXXXXXXXXXXXXXXXXX 321
           PP L S          +L S  P   AC  G   +                         
Sbjct: 116 PPELGSSPPVLCSNSSSLGSSTPTGAACAPGDYGR------------QALSPAEAEKRSG 163

Query: 322 XXXKDSLGNSKGENAANWLTAKSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISRS 381
              K    +S+  N  + + +K  RK+R  +TK Q  ELE EF  + YLTR RR EI+ +
Sbjct: 164 GKRKSDSSDSQEGNYKSEVNSKP-RKERTAFTKEQIRELEAEFAHHNYLTRLRRYEIAVN 222

Query: 382 VHLTDRQVKIWFQNRRMKLKKM 403
           + LT+RQVK+WFQNRRMK K++
Sbjct: 223 LDLTERQVKVWFQNRRMKWKRV 244



 Score = 42.0 bits (97), Expect = 4e-04
 Identities = 20/45 (44%), Positives = 31/45 (68%)

Query: 126 RTRKKRCPYTKYQIRELEREFFFSVYINKEKRLQLSRMLNLTDRQ 170
           + RK+R  +TK QIRELE EF    Y+ + +R +++  L+LT+RQ
Sbjct: 185 KPRKERTAFTKEQIRELEAEFAHHNYLTRLRRYEIAVNLDLTERQ 229



>gi|20138327|sp|Q9BZM3|GSH2_HUMAN   Homeobox protein GSH-2
          Length = 304

 Score = 71.6 bits (174), Expect = 5e-13
 Identities = 33/59 (55%), Positives = 47/59 (79%)

Query: 344 SGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISRSVHLTDRQVKIWFQNRRMKLKK 402
           +G++ R  +T  Q LELE+EF  NMYL+R RR+EI+  ++L+++QVKIWFQNRR+K KK
Sbjct: 201 NGKRMRTAFTSTQLLELEREFSSNMYLSRLRRIEIATYLNLSEKQVKIWFQNRRVKHKK 259



 Score = 39.7 bits (91), Expect = 0.002
 Identities = 31/128 (24%), Positives = 54/128 (42%), Gaps = 8/128 (6%)

Query: 49  PRGNLAHCYS---AEELVHRDCLQAPSAAGVPGDVLAKSSANVYHHP---TPAVSSNFYS 102
           PR N AH +         H    Q  SAA       A ++A    HP    P  ++  Y+
Sbjct: 120 PRVNHAHHHHHPPQHHHHHHQPQQPGSAAAAAAAAAAAAAAAALGHPQHHAPVCTATTYN 179

Query: 103 TLXXXXXXXXXXXXXXXXXXXXQRTRKKRCPYTKYQIRELEREFFFSVYINKEKRLQLSR 162
                                    ++ R  +T  Q+ ELEREF  ++Y+++ +R++++ 
Sbjct: 180 V--ADPRRFHCLTMGGSDASQVPNGKRMRTAFTSTQLLELEREFSSNMYLSRLRRIEIAT 237

Query: 163 MLNLTDRQ 170
            LNL+++Q
Sbjct: 238 YLNLSEKQ 245



>gi|27923786|sp|Q9H4S2|GSHI_HUMAN   Homeobox protein GSH-1
          Length = 264

 Score = 71.2 bits (173), Expect = 6e-13
 Identities = 34/67 (50%), Positives = 49/67 (73%)

Query: 344 SGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISRSVHLTDRQVKIWFQNRRMKLKKM 403
           S ++ R  +T  Q LELE+EF  NMYL+R RR+EI+  ++L+++QVKIWFQNRR+K KK 
Sbjct: 146 SSKRMRTAFTSTQLLELEREFASNMYLSRLRRIEIATYLNLSEKQVKIWFQNRRVKHKKE 205

Query: 404 NRENRIR 410
            + +  R
Sbjct: 206 GKGSNHR 212



 Score = 39.7 bits (91), Expect = 0.002
 Identities = 15/44 (34%), Positives = 33/44 (75%)

Query: 127 TRKKRCPYTKYQIRELEREFFFSVYINKEKRLQLSRMLNLTDRQ 170
           +++ R  +T  Q+ ELEREF  ++Y+++ +R++++  LNL+++Q
Sbjct: 147 SKRMRTAFTSTQLLELEREFASNMYLSRLRRIEIATYLNLSEKQ 190



>gi|20141282|sp|Q99626|CDX2_HUMAN   Homeobox protein CDX-2 (Caudal-type homeobox protein 2) (CDX-3)
          Length = 313

 Score = 70.9 bits (172), Expect = 8e-13
 Identities = 32/60 (53%), Positives = 46/60 (76%)

Query: 347 KKRCPYTKHQTLELEKEFLFNMYLTRERRLEISRSVHLTDRQVKIWFQNRRMKLKKMNRE 406
           K R  YT HQ LELEKEF ++ Y+T  R+ E++ ++ L++RQVKIWFQNRR K +K+N++
Sbjct: 188 KYRVVYTDHQRLELEKEFHYSRYITIRRKAELAATLGLSERQVKIWFQNRRAKERKINKK 247



 Score = 38.1 bits (87), Expect = 0.006
 Identities = 28/83 (33%), Positives = 43/83 (51%), Gaps = 3/83 (3%)

Query: 126 RTRKK-RCPYTKYQIRELEREFFFSVYINKEKRLQLSRMLNLTDRQ-NIKEESSYCLYDS 183
           RT+ K R  YT +Q  ELE+EF +S YI   ++ +L+  L L++RQ  I  ++       
Sbjct: 184 RTKDKYRVVYTDHQRLELEKEFHYSRYITIRRKAELAATLGLSERQVKIWFQNRRAKERK 243

Query: 184 ADKCPKVSATAAELAPFPRGPPP 206
            +K  K+     +  P P  PPP
Sbjct: 244 INK-KKLQQQQQQQPPQPPPPPP 265



>gi|1709078|sp|P50221|MEOX1_HUMAN   Homeobox protein MOX-1 (Mesenchyme homeobox 1)
          Length = 254

 Score = 70.5 bits (171), Expect = 1e-12
 Identities = 38/79 (48%), Positives = 51/79 (64%), Gaps = 2/79 (2%)

Query: 325 KDSLGNSKGENAANWLTAKSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISRSVHL 384
           K+S  N   EN      +   RK+R  +TK Q  ELE EF  + YLTR RR EI+ ++ L
Sbjct: 153 KESSDNQ--ENRGKPEGSSKARKERTAFTKEQLRELEAEFAHHNYLTRLRRYEIAVNLDL 210

Query: 385 TDRQVKIWFQNRRMKLKKM 403
           ++RQVK+WFQNRRMK K++
Sbjct: 211 SERQVKVWFQNRRMKWKRV 229



 Score = 40.0 bits (92), Expect = 0.001
 Identities = 18/45 (40%), Positives = 31/45 (68%)

Query: 126 RTRKKRCPYTKYQIRELEREFFFSVYINKEKRLQLSRMLNLTDRQ 170
           + RK+R  +TK Q+RELE EF    Y+ + +R +++  L+L++RQ
Sbjct: 170 KARKERTAFTKEQLRELEAEFAHHNYLTRLRRYEIAVNLDLSERQ 214



>gi|3023467|sp|O14627|CDX4_HUMAN   Homeobox protein CDX-4 (Caudal-type homeobox protein 4)
          Length = 284

 Score = 68.9 bits (167), Expect = 3e-12
 Identities = 33/61 (54%), Positives = 45/61 (73%)

Query: 343 KSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISRSVHLTDRQVKIWFQNRRMKLKK 402
           ++  K R  YT HQ LELEKEF  N Y+T +R+ E++ ++ L++RQVKIWFQNRR K +K
Sbjct: 171 RTKEKYRVVYTDHQRLELEKEFHCNRYITIQRKSELAVNLGLSERQVKIWFQNRRAKERK 230

Query: 403 M 403
           M
Sbjct: 231 M 231



 Score = 34.7 bits (78), Expect = 0.062
 Identities = 19/46 (41%), Positives = 31/46 (67%), Gaps = 1/46 (2%)

Query: 126 RTRKK-RCPYTKYQIRELEREFFFSVYINKEKRLQLSRMLNLTDRQ 170
           RT++K R  YT +Q  ELE+EF  + YI  +++ +L+  L L++RQ
Sbjct: 171 RTKEKYRVVYTDHQRLELEKEFHCNRYITIQRKSELAVNLGLSERQ 216



>gi|45644931|sp|P50219|HLXB9_HUMAN   Homeobox protein HB9
          Length = 403

 Score = 68.2 bits (165), Expect = 5e-12
 Identities = 31/60 (51%), Positives = 42/60 (70%)

Query: 346 RKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISRSVHLTDRQVKIWFQNRRMKLKKMNR 405
           R+ R  +T  Q LELE +F  N YL+R +R E++ S+ LT+ QVKIWFQNRRMK K+  +
Sbjct: 244 RRPRTAFTSQQLLELEHQFKLNKYLSRPKRFEVATSLMLTETQVKIWFQNRRMKWKRSKK 303



 Score = 35.4 bits (80), Expect = 0.037
 Identities = 15/45 (33%), Positives = 28/45 (62%)

Query: 126 RTRKKRCPYTKYQIRELEREFFFSVYINKEKRLQLSRMLNLTDRQ 170
           + R+ R  +T  Q+ ELE +F  + Y+++ KR +++  L LT+ Q
Sbjct: 242 KCRRPRTAFTSQQLLELEHQFKLNKYLSRPKRFEVATSLMLTETQ 286



>gi|13959687|sp|P35548|MSX2_HUMAN   Homeobox protein MSX-2 (Hox-8)
          Length = 267

 Score = 64.7 bits (156), Expect = 6e-11
 Identities = 31/61 (50%), Positives = 41/61 (67%)

Query: 343 KSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISRSVHLTDRQVKIWFQNRRMKLKK 402
           K+ RK R P+T  Q L LE++F    YL+   R E S S++LT+ QVKIWFQNRR K K+
Sbjct: 140 KTNRKPRTPFTTSQLLALERKFRQKQYLSIAERAEFSSSLNLTETQVKIWFQNRRAKAKR 199

Query: 403 M 403
           +
Sbjct: 200 L 200



 Score = 36.2 bits (82), Expect = 0.021
 Identities = 18/43 (41%), Positives = 26/43 (60%)

Query: 128 RKKRCPYTKYQIRELEREFFFSVYINKEKRLQLSRMLNLTDRQ 170
           RK R P+T  Q+  LER+F    Y++  +R + S  LNLT+ Q
Sbjct: 143 RKPRTPFTTSQLLALERKFRQKQYLSIAERAEFSSSLNLTETQ 185



>gi|12230077|sp|Q14549|GBX1_HUMAN   Homeobox protein GBX-1 (Gastrulation and brain-specific homeobox
           protein 1)
          Length = 139

 Score = 63.9 bits (154), Expect = 1e-10
 Identities = 38/87 (43%), Positives = 51/87 (58%), Gaps = 4/87 (4%)

Query: 325 KDSLGNSKGENA--ANWLTAKSG--RKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISR 380
           K SLG    E A     +TA  G  R++R  +T  Q LELEKEF    YL+   R +I+ 
Sbjct: 13  KGSLGTGAEEGAPVTAGVTAPGGKSRRRRTAFTSEQLLELEKEFHCKKYLSLTERSQIAH 72

Query: 381 SVHLTDRQVKIWFQNRRMKLKKMNREN 407
           ++ L++ QVKIWFQNRR K K++   N
Sbjct: 73  ALKLSEVQVKIWFQNRRAKWKRIKAGN 99



 Score = 35.0 bits (79), Expect = 0.048
 Identities = 15/45 (33%), Positives = 29/45 (64%)

Query: 126 RTRKKRCPYTKYQIRELEREFFFSVYINKEKRLQLSRMLNLTDRQ 170
           ++R++R  +T  Q+ ELE+EF    Y++  +R Q++  L L++ Q
Sbjct: 36  KSRRRRTAFTSEQLLELEKEFHCKKYLSLTERSQIAHALKLSEVQ 80



>gi|23503066|sp|P28360|MSX1_HUMAN   Homeobox protein MSX-1 (Hox-7)
          Length = 297

 Score = 63.5 bits (153), Expect = 1e-10
 Identities = 31/61 (50%), Positives = 40/61 (65%)

Query: 343 KSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISRSVHLTDRQVKIWFQNRRMKLKK 402
           K+ RK R P+T  Q L LE++F    YL+   R E S S+ LT+ QVKIWFQNRR K K+
Sbjct: 164 KTNRKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNRRAKAKR 223

Query: 403 M 403
           +
Sbjct: 224 L 224



 Score = 34.3 bits (77), Expect = 0.082
 Identities = 17/43 (39%), Positives = 26/43 (60%)

Query: 128 RKKRCPYTKYQIRELEREFFFSVYINKEKRLQLSRMLNLTDRQ 170
           RK R P+T  Q+  LER+F    Y++  +R + S  L+LT+ Q
Sbjct: 167 RKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQ 209



>gi|1730095|sp|P52954|LBX1_HUMAN   Transcription factor LBX1
          Length = 280

 Score = 63.2 bits (152), Expect = 2e-10
 Identities = 31/62 (50%), Positives = 40/62 (64%)

Query: 341 TAKSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISRSVHLTDRQVKIWFQNRRMKL 400
           T K  RK R  +T HQ  ELEK FL+  YL+   R +I++ + LT+ QV  WFQNRR KL
Sbjct: 120 TPKKRRKSRTAFTNHQIYELEKRFLYQKYLSPADRDQIAQQLGLTNAQVITWFQNRRAKL 179

Query: 401 KK 402
           K+
Sbjct: 180 KR 181



 Score = 39.7 bits (91), Expect = 0.002
 Identities = 18/48 (37%), Positives = 30/48 (62%)

Query: 125 QRTRKKRCPYTKYQIRELEREFFFSVYINKEKRLQLSRMLNLTDRQNI 172
           ++ RK R  +T +QI ELE+ F +  Y++   R Q+++ L LT+ Q I
Sbjct: 122 KKRRKSRTAFTNHQIYELEKRFLYQKYLSPADRDQIAQQLGLTNAQVI 169



>gi|12644308|sp|P52951|GBX2_HUMAN   Homeobox protein GBX-2 (Gastrulation and brain-specific homeobox
           protein 2)
          Length = 348

 Score = 61.6 bits (148), Expect = 5e-10
 Identities = 33/77 (42%), Positives = 47/77 (61%), Gaps = 1/77 (1%)

Query: 331 SKGENAANWLTAKSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISRSVHLTDRQVK 390
           S G   +   T K+ R++R  +T  Q LELEKEF    YL+   R +I+ ++ L++ QVK
Sbjct: 234 SSGAAGSTTSTGKN-RRRRTAFTSEQLLELEKEFHCKKYLSLTERSQIAHALKLSEVQVK 292

Query: 391 IWFQNRRMKLKKMNREN 407
           IWFQNRR K K++   N
Sbjct: 293 IWFQNRRAKWKRVKAGN 309



 Score = 34.7 bits (78), Expect = 0.062
 Identities = 15/45 (33%), Positives = 28/45 (62%)

Query: 126 RTRKKRCPYTKYQIRELEREFFFSVYINKEKRLQLSRMLNLTDRQ 170
           + R++R  +T  Q+ ELE+EF    Y++  +R Q++  L L++ Q
Sbjct: 246 KNRRRRTAFTSEQLLELEKEFHCKKYLSLTERSQIAHALKLSEVQ 290



>gi|13431329|sp|Q9UMQ3|BARX2_HUMAN   Homeobox protein BarH-like 2
          Length = 254

 Score = 61.2 bits (147), Expect = 6e-10
 Identities = 32/78 (41%), Positives = 48/78 (61%)

Query: 326 DSLGNSKGENAANWLTAKSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISRSVHLT 385
           ++L +S+ E        K  R+ R  +T+ Q + LEK+F    YL+   RL++++S+ LT
Sbjct: 89  EALASSESETEQPTPRQKKPRRSRTIFTELQLMGLEKKFQKQKYLSTPDRLDLAQSLGLT 148

Query: 386 DRQVKIWFQNRRMKLKKM 403
             QVK W+QNRRMK KKM
Sbjct: 149 QLQVKTWYQNRRMKWKKM 166



>gi|29336920|sp|Q9BZE3|BARH1_HUMAN   BarH-like 1 homeobox protein (FKSG31 protein)
          Length = 327

 Score = 60.5 bits (145), Expect = 1e-09
 Identities = 28/60 (46%), Positives = 40/60 (66%)

Query: 343 KSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISRSVHLTDRQVKIWFQNRRMKLKK 402
           K  RK R  +T HQ  +LE+ F    YL+ + R+E++ S++LTD QVK W+QNRR K K+
Sbjct: 176 KKPRKARTAFTDHQLAQLERSFERQKYLSVQDRMELAASLNLTDTQVKTWYQNRRTKWKR 235



 Score = 40.4 bits (93), Expect = 0.001
 Identities = 18/46 (39%), Positives = 30/46 (65%)

Query: 125 QRTRKKRCPYTKYQIRELEREFFFSVYINKEKRLQLSRMLNLTDRQ 170
           ++ RK R  +T +Q+ +LER F    Y++ + R++L+  LNLTD Q
Sbjct: 176 KKPRKARTAFTDHQLAQLERSFERQKYLSVQDRMELAASLNLTDTQ 221



>gi|20532396|sp|O43763|TLX2_HUMAN   T-cell leukemia homeobox protein 2 (Homeobox protein Hox-11L1)
           (Neural crest homeobox protein)
          Length = 284

 Score = 60.1 bits (144), Expect = 1e-09
 Identities = 28/71 (39%), Positives = 41/71 (57%)

Query: 341 TAKSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISRSVHLTDRQVKIWFQNRRMKL 400
           T    +K R  +++ Q LELE+ FL   YL    R  +++++ +TD QVK WFQNRR K 
Sbjct: 153 TPPKRKKPRTSFSRSQVLELERRFLRQKYLASAERAALAKALRMTDAQVKTWFQNRRTKW 212

Query: 401 KKMNRENRIRE 411
           ++   E R  E
Sbjct: 213 RRQTAEEREAE 223



 Score = 34.3 bits (77), Expect = 0.082
 Identities = 15/45 (33%), Positives = 26/45 (57%)

Query: 126 RTRKKRCPYTKYQIRELEREFFFSVYINKEKRLQLSRMLNLTDRQ 170
           + +K R  +++ Q+ ELER F    Y+   +R  L++ L +TD Q
Sbjct: 156 KRKKPRTSFSRSQVLELERRFLRQKYLASAERAALAKALRMTDAQ 200



>gi|27923815|sp|Q8TAU0|NKX23_HUMAN   Homeobox protein Nkx-2.3 (Homeobox protein NKX-2.3) (Homeobox
           protein NK-2 homolog C)
          Length = 364

 Score = 58.5 bits (140), Expect = 4e-09
 Identities = 33/90 (36%), Positives = 51/90 (56%), Gaps = 1/90 (1%)

Query: 326 DSLGNSKGENAANWLTAKSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISRSVHLT 385
           ++ G+ K    +     +S RK R  +++ Q  ELE+ F    YL+   R  ++ S+ LT
Sbjct: 129 ETAGDCKAAEESERPKPRSRRKPRVLFSQAQVFELERRFKQQRYLSAPEREHLASSLKLT 188

Query: 386 DRQVKIWFQNRRMKLKKMNRENRIRELTAN 415
             QVKIWFQNRR K K+  R+++  EL A+
Sbjct: 189 STQVKIWFQNRRYKCKR-QRQDKSLELGAH 217



 Score = 29.6 bits (65), Expect = 2.0
 Identities = 16/43 (37%), Positives = 24/43 (55%)

Query: 128 RKKRCPYTKYQIRELEREFFFSVYINKEKRLQLSRMLNLTDRQ 170
           RK R  +++ Q+ ELER F    Y++  +R  L+  L LT  Q
Sbjct: 149 RKPRVLFSQAQVFELERRFKQQRYLSAPEREHLASSLKLTSTQ 191



>gi|14194481|sp|Q9HBU1|BARX1_HUMAN   Homeobox protein BarH-like 1
          Length = 225

 Score = 58.5 bits (140), Expect = 4e-09
 Identities = 28/62 (45%), Positives = 41/62 (66%)

Query: 342 AKSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISRSVHLTDRQVKIWFQNRRMKLK 401
           AK GR+ R  +T+ Q + LEK F    YL+   R++++ S+ L+  QVK W+QNRRMK K
Sbjct: 110 AKKGRRSRTVFTELQLMGLEKRFEKQKYLSTPDRIDLAESLGLSQLQVKTWYQNRRMKWK 169

Query: 402 KM 403
           K+
Sbjct: 170 KI 171



>gi|1352398|sp|P49640|EVX1_HUMAN   Homeobox even-skipped homolog protein 1 (EVX-1)
          Length = 407

 Score = 58.2 bits (139), Expect = 5e-09
 Identities = 29/74 (39%), Positives = 46/74 (62%), Gaps = 2/74 (2%)

Query: 329 GNSKGENAANWLTAKSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISRSVHLTDRQ 388
           G S+G  A +   +   R+ R  +T+ Q   LEKEF    Y++R RR E++ +++L +  
Sbjct: 169 GGSQGTLACS--ASDQMRRYRTAFTREQIARLEKEFYRENYVSRPRRCELAAALNLPETT 226

Query: 389 VKIWFQNRRMKLKK 402
           +K+WFQNRRMK K+
Sbjct: 227 IKVWFQNRRMKDKR 240



 Score = 35.8 bits (81), Expect = 0.028
 Identities = 15/41 (36%), Positives = 27/41 (65%)

Query: 128 RKKRCPYTKYQIRELEREFFFSVYINKEKRLQLSRMLNLTD 168
           R+ R  +T+ QI  LE+EF+   Y+++ +R +L+  LNL +
Sbjct: 184 RRYRTAFTREQIARLEKEFYRENYVSRPRRCELAAALNLPE 224



>gi|6016208|sp|O15522|NK28_HUMAN   Homeobox protein Nkx-2.8 (Homeobox protein NK-2 homolog H)
          Length = 239

 Score = 58.2 bits (139), Expect = 5e-09
 Identities = 31/77 (40%), Positives = 44/77 (57%)

Query: 326 DSLGNSKGENAANWLTAKSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISRSVHLT 385
           DS        A+    A+  +K+R  ++K QTLELE+ F    YL+   R +++  + LT
Sbjct: 65  DSSQRPSARPASPGSDAEKRKKRRVLFSKAQTLELERRFRQQRYLSAPEREQLASLLRLT 124

Query: 386 DRQVKIWFQNRRMKLKK 402
             QVKIWFQN R KLK+
Sbjct: 125 PTQVKIWFQNHRYKLKR 141



 Score = 33.9 bits (76), Expect = 0.11
 Identities = 17/46 (36%), Positives = 28/46 (60%)

Query: 125 QRTRKKRCPYTKYQIRELEREFFFSVYINKEKRLQLSRMLNLTDRQ 170
           ++ +K+R  ++K Q  ELER F    Y++  +R QL+ +L LT  Q
Sbjct: 82  EKRKKRRVLFSKAQTLELERRFRQQRYLSAPEREQLASLLRLTPTQ 127



>gi|21903415|sp|P19622|HME2_HUMAN   Homeobox protein engrailed-2 (Hu-En-2)
          Length = 333

 Score = 57.8 bits (138), Expect = 7e-09
 Identities = 25/60 (41%), Positives = 38/60 (63%)

Query: 343 KSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISRSVHLTDRQVKIWFQNRRMKLKK 402
           K  ++ R  +T  Q   L+ EF  N YLT +RR  +++ + L + Q+KIWFQN+R K+KK
Sbjct: 242 KEDKRPRTAFTAEQLQRLKAEFQTNRYLTEQRRQSLAQELSLNESQIKIWFQNKRAKIKK 301



>gi|27923817|sp|Q9H2Z4|NK24_HUMAN   Homeobox protein Nkx-2.4 (Homeobox protein NKX2.4) (Homeobox
           protein NK-2 homolog D)
          Length = 353

 Score = 57.8 bits (138), Expect = 7e-09
 Identities = 26/67 (38%), Positives = 41/67 (61%)

Query: 346 RKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISRSVHLTDRQVKIWFQNRRMKLKKMNR 405
           RK+R  +++ Q  ELE+ F    YL+   R  ++  +HLT  QVKIWFQN R K+K+  +
Sbjct: 190 RKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQAK 249

Query: 406 ENRIREL 412
           +   ++L
Sbjct: 250 DKAAQQL 256



 Score = 33.9 bits (76), Expect = 0.11
 Identities = 26/82 (31%), Positives = 41/82 (50%), Gaps = 5/82 (6%)

Query: 128 RKKRCPYTKYQIRELEREFFFSVYINKEKRLQLSRMLNLTDRQNIK---EESSYCLYDSA 184
           RK+R  +++ Q+ ELER F    Y++  +R  L+ M++LT  Q +K   +   Y +   A
Sbjct: 190 RKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQ-VKIWFQNHRYKMKRQA 248

Query: 185 -DKCPKVSATAAELAPFPRGPP 205
            DK  +       L P P  PP
Sbjct: 249 KDKAAQQLQQEGGLGPPPPPPP 270



>gi|2506529|sp|Q07687|DLX2_HUMAN   Homeobox protein DLX-2
          Length = 328

 Score = 57.4 bits (137), Expect = 9e-09
 Identities = 30/67 (44%), Positives = 37/67 (55%)

Query: 343 KSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISRSVHLTDRQVKIWFQNRRMKLKK 402
           K  RK R  Y+  Q   L++ F    YL    R E++ S+ LT  QVKIWFQNRR K KK
Sbjct: 150 KKVRKPRTIYSSFQLAALQRRFQKTQYLALPERAELAASLGLTQTQVKIWFQNRRSKFKK 209

Query: 403 MNRENRI 409
           M +   I
Sbjct: 210 MWKSGEI 216



>gi|47117915|sp|Q9NY43|BARH2_HUMAN   BarH-like 2 homeobox protein
          Length = 387

 Score = 57.4 bits (137), Expect = 9e-09
 Identities = 26/61 (42%), Positives = 41/61 (67%)

Query: 342 AKSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISRSVHLTDRQVKIWFQNRRMKLK 401
           AK  RK R  ++ HQ  +LE+ F    YL+ + R++++ +++LTD QVK W+QNRR K K
Sbjct: 229 AKKPRKARTAFSDHQLNQLERSFERQKYLSVQDRMDLAAALNLTDTQVKTWYQNRRTKWK 288

Query: 402 K 402
           +
Sbjct: 289 R 289



 Score = 38.5 bits (88), Expect = 0.004
 Identities = 17/46 (36%), Positives = 29/46 (63%)

Query: 125 QRTRKKRCPYTKYQIRELEREFFFSVYINKEKRLQLSRMLNLTDRQ 170
           ++ RK R  ++ +Q+ +LER F    Y++ + R+ L+  LNLTD Q
Sbjct: 230 KKPRKARTAFSDHQLNQLERSFERQKYLSVQDRMDLAAALNLTDTQ 275



>gi|12231013|sp|Q03828|EVX2_HUMAN   Homeobox even-skipped homolog protein 2 (EVX-2)
          Length = 476

 Score = 57.4 bits (137), Expect = 9e-09
 Identities = 25/57 (43%), Positives = 39/57 (68%)

Query: 346 RKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISRSVHLTDRQVKIWFQNRRMKLKK 402
           R+ R  +T+ Q   LEKEF    Y++R RR E++ +++L +  +K+WFQNRRMK K+
Sbjct: 189 RRYRTAFTREQIARLEKEFYRENYVSRPRRCELAAALNLPETTIKVWFQNRRMKDKR 245



 Score = 36.2 bits (82), Expect = 0.021
 Identities = 15/43 (34%), Positives = 28/43 (65%)

Query: 126 RTRKKRCPYTKYQIRELEREFFFSVYINKEKRLQLSRMLNLTD 168
           + R+ R  +T+ QI  LE+EF+   Y+++ +R +L+  LNL +
Sbjct: 187 QVRRYRTAFTREQIARLEKEFYRENYVSRPRRCELAAALNLPE 229



>gi|12230168|sp|Q9UBX0|HESX1_HUMAN   Homeobox expressed in ES cells 1 (Homeobox protein ANF) (hAnf)
          Length = 185

 Score = 56.6 bits (135), Expect = 2e-08
 Identities = 27/73 (36%), Positives = 46/73 (63%)

Query: 345 GRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISRSVHLTDRQVKIWFQNRRMKLKKMN 404
           GR+ R  +T++Q   LE  F  N Y   + R ++++ ++L + +++IWFQNRR KLK+ +
Sbjct: 108 GRRPRTAFTQNQIEVLENVFRVNCYPGIDIREDLAQKLNLEEDRIQIWFQNRRAKLKRSH 167

Query: 405 RENRIRELTANFN 417
           RE++      NFN
Sbjct: 168 RESQFLMAKKNFN 180



>gi|547658|sp|Q03014|HHEX_HUMAN   Homeobox protein PRH (Hematopoietically expressed homeobox)
           (Homeobox protein HEX)
          Length = 270

 Score = 56.6 bits (135), Expect = 2e-08
 Identities = 24/56 (42%), Positives = 39/56 (69%)

Query: 352 YTKHQTLELEKEFLFNMYLTRERRLEISRSVHLTDRQVKIWFQNRRMKLKKMNREN 407
           ++  QT+ELEK+F    YL+   R  +++ + L++RQVK WFQNRR K +++ +EN
Sbjct: 144 FSNDQTIELEKKFETQKYLSPPERKRLAKMLQLSERQVKTWFQNRRAKWRRLKQEN 199



 Score = 29.3 bits (64), Expect = 2.6
 Identities = 13/37 (35%), Positives = 25/37 (67%)

Query: 134 YTKYQIRELEREFFFSVYINKEKRLQLSRMLNLTDRQ 170
           ++  Q  ELE++F    Y++  +R +L++ML L++RQ
Sbjct: 144 FSNDQTIELEKKFETQKYLSPPERKRLAKMLQLSERQ 180



>gi|17377578|sp|Q99801|NKX31_HUMAN   Homeobox protein Nkx-3.1
          Length = 234

 Score = 56.6 bits (135), Expect = 2e-08
 Identities = 24/67 (35%), Positives = 42/67 (62%)

Query: 346 RKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISRSVHLTDRQVKIWFQNRRMKLKKMNR 405
           ++ R  ++  Q +ELE++F    YL+   R  +++++ LT+ QVKIWFQNRR K K+   
Sbjct: 125 KRSRAAFSHTQVIELERKFSHQKYLSAPERAHLAKNLKLTETQVKIWFQNRRYKTKRKQL 184

Query: 406 ENRIREL 412
            + + +L
Sbjct: 185 SSELGDL 191



 Score = 33.1 bits (74), Expect = 0.18
 Identities = 15/46 (32%), Positives = 27/46 (58%)

Query: 125 QRTRKKRCPYTKYQIRELEREFFFSVYINKEKRLQLSRMLNLTDRQ 170
           Q  ++ R  ++  Q+ ELER+F    Y++  +R  L++ L LT+ Q
Sbjct: 122 QPQKRSRAAFSHTQVIELERKFSHQKYLSAPERAHLAKNLKLTETQ 167



>gi|399982|sp|P31314|TLX1_HUMAN   T-cell leukemia homeobox protein 1 (Homeobox protein Hox-11) (TCL-3
           proto-oncogene)
          Length = 330

 Score = 56.6 bits (135), Expect = 2e-08
 Identities = 28/71 (39%), Positives = 39/71 (54%)

Query: 341 TAKSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISRSVHLTDRQVKIWFQNRRMKL 400
           T    +K R  +T+ Q  ELEK F    YL    R  +++++ +TD QVK WFQNRR K 
Sbjct: 197 TPPKKKKPRTSFTRLQICELEKRFHRQKYLASAERAALAKALKMTDAQVKTWFQNRRTKW 256

Query: 401 KKMNRENRIRE 411
           ++   E R  E
Sbjct: 257 RRQTAEEREAE 267



 Score = 34.7 bits (78), Expect = 0.062
 Identities = 16/45 (35%), Positives = 26/45 (57%)

Query: 126 RTRKKRCPYTKYQIRELEREFFFSVYINKEKRLQLSRMLNLTDRQ 170
           + +K R  +T+ QI ELE+ F    Y+   +R  L++ L +TD Q
Sbjct: 200 KKKKPRTSFTRLQICELEKRFHRQKYLASAERAALAKALKMTDAQ 244



>gi|14917010|sp|Q05925|HME1_HUMAN   Homeobox protein engrailed-1 (Hu-En-1)
          Length = 392

 Score = 56.6 bits (135), Expect = 2e-08
 Identities = 24/60 (40%), Positives = 38/60 (63%)

Query: 343 KSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISRSVHLTDRQVKIWFQNRRMKLKK 402
           K  ++ R  +T  Q   L+ EF  N Y+T +RR  +++ + L + Q+KIWFQN+R K+KK
Sbjct: 301 KEDKRPRTAFTAEQLQRLKAEFQANRYITEQRRQTLAQELSLNESQIKIWFQNKRAKIKK 360



>gi|6016205|sp|O95096|NKX22_HUMAN   Homeobox protein Nkx-2.2 (Homeobox protein NK-2 homolog B)
          Length = 273

 Score = 56.2 bits (134), Expect = 2e-08
 Identities = 27/61 (44%), Positives = 37/61 (60%)

Query: 346 RKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISRSVHLTDRQVKIWFQNRRMKLKKMNR 405
           RK+R  ++K QT ELE+ F    YL+   R  ++  + LT  QVKIWFQN R K+K+   
Sbjct: 129 RKRRVLFSKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKMKRARA 188

Query: 406 E 406
           E
Sbjct: 189 E 189



 Score = 31.6 bits (70), Expect = 0.53
 Identities = 16/45 (35%), Positives = 26/45 (57%)

Query: 126 RTRKKRCPYTKYQIRELEREFFFSVYINKEKRLQLSRMLNLTDRQ 170
           + RK+R  ++K Q  ELER F    Y++  +R  L+ ++ LT  Q
Sbjct: 127 KKRKRRVLFSKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQ 171



>gi|1174819|sp|P43699|TITF1_HUMAN   Thyroid transcription factor 1 (Thyroid nuclear factor 1) (TTF-1)
           (Homeobox protein Nkx-2.1) (Homeobox protein NK-2
           homolog A)
          Length = 371

 Score = 56.2 bits (134), Expect = 2e-08
 Identities = 25/66 (37%), Positives = 40/66 (60%)

Query: 346 RKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISRSVHLTDRQVKIWFQNRRMKLKKMNR 405
           RK+R  +++ Q  ELE+ F    YL+   R  ++  +HLT  QVKIWFQN R K+K+  +
Sbjct: 162 RKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQAK 221

Query: 406 ENRIRE 411
           +   ++
Sbjct: 222 DKAAQQ 227



 Score = 33.1 bits (74), Expect = 0.18
 Identities = 16/43 (37%), Positives = 27/43 (62%)

Query: 128 RKKRCPYTKYQIRELEREFFFSVYINKEKRLQLSRMLNLTDRQ 170
           RK+R  +++ Q+ ELER F    Y++  +R  L+ M++LT  Q
Sbjct: 162 RKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQ 204



>gi|23831508|sp|O43711|TLX3_HUMAN   T-cell leukemia homeobox protein 3 (Homeobox protein Hox-11L2)
          Length = 291

 Score = 55.8 bits (133), Expect = 3e-08
 Identities = 27/68 (39%), Positives = 38/68 (55%)

Query: 341 TAKSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISRSVHLTDRQVKIWFQNRRMKL 400
           T    +K R  +++ Q  ELEK F    YL    R  +++S+ +TD QVK WFQNRR K 
Sbjct: 162 TPPKRKKPRTSFSRVQICELEKRFHRQKYLASAERAALAKSLKMTDAQVKTWFQNRRTKW 221

Query: 401 KKMNRENR 408
           ++   E R
Sbjct: 222 RRQTAEER 229



 Score = 33.1 bits (74), Expect = 0.18
 Identities = 15/45 (33%), Positives = 26/45 (57%)

Query: 126 RTRKKRCPYTKYQIRELEREFFFSVYINKEKRLQLSRMLNLTDRQ 170
           + +K R  +++ QI ELE+ F    Y+   +R  L++ L +TD Q
Sbjct: 165 KRKKPRTSFSRVQICELEKRFHRQKYLASAERAALAKSLKMTDAQ 209



>gi|3913487|sp|O60479|DLX3_HUMAN   Homeobox protein DLX-3
          Length = 287

 Score = 55.5 bits (132), Expect = 3e-08
 Identities = 27/67 (40%), Positives = 37/67 (55%)

Query: 343 KSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISRSVHLTDRQVKIWFQNRRMKLKK 402
           K  RK R  Y+ +Q   L++ F    YL    R E++  + LT  QVKIWFQNRR K KK
Sbjct: 127 KKVRKPRTIYSSYQLAALQRRFQKAQYLALPERAELAAQLGLTQTQVKIWFQNRRSKFKK 186

Query: 403 MNRENRI 409
           + +   +
Sbjct: 187 LYKNGEV 193



 Score = 33.5 bits (75), Expect = 0.14
 Identities = 16/46 (34%), Positives = 26/46 (56%)

Query: 125 QRTRKKRCPYTKYQIRELEREFFFSVYINKEKRLQLSRMLNLTDRQ 170
           ++ RK R  Y+ YQ+  L+R F  + Y+   +R +L+  L LT  Q
Sbjct: 127 KKVRKPRTIYSSYQLAALQRRFQKAQYLALPERAELAAQLGLTQTQ 172



>gi|12644329|sp|P56178|DLX5_HUMAN   Homeobox protein DLX-5
          Length = 289

 Score = 55.1 bits (131), Expect = 4e-08
 Identities = 27/67 (40%), Positives = 38/67 (56%)

Query: 343 KSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISRSVHLTDRQVKIWFQNRRMKLKK 402
           K  RK R  Y+  Q   L++ F    YL    R E++ S+ LT  QVKIWFQN+R K+KK
Sbjct: 135 KKVRKPRTIYSSFQLAALQRRFQKTQYLALPERAELAASLGLTQTQVKIWFQNKRSKIKK 194

Query: 403 MNRENRI 409
           + +   +
Sbjct: 195 IMKNGEM 201



>gi|6016210|sp|P78367|NK32_HUMAN   Homeobox protein Nkx-3.2 (Bagpipe homeobox protein homolog 1)
          Length = 333

 Score = 53.9 bits (128), Expect = 1e-07
 Identities = 24/57 (42%), Positives = 36/57 (63%)

Query: 346 RKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISRSVHLTDRQVKIWFQNRRMKLKK 402
           ++ R  ++  Q  ELE+ F    YL+   R +++ S+ LT+ QVKIWFQNRR K K+
Sbjct: 207 KRSRAAFSHAQVFELERRFNHQRYLSGPERADLAASLKLTETQVKIWFQNRRYKTKR 263



 Score = 31.6 bits (70), Expect = 0.53
 Identities = 15/45 (33%), Positives = 25/45 (55%)

Query: 126 RTRKKRCPYTKYQIRELEREFFFSVYINKEKRLQLSRMLNLTDRQ 170
           R ++ R  ++  Q+ ELER F    Y++  +R  L+  L LT+ Q
Sbjct: 205 RKKRSRAAFSHAQVFELERRFNHQRYLSGPERADLAASLKLTETQ 249



>gi|3915680|sp|Q92988|DLX4_HUMAN   Homeobox protein DLX-4 (DLX-7) (DLX-8)
          Length = 347

 Score = 53.9 bits (128), Expect = 1e-07
 Identities = 27/66 (40%), Positives = 37/66 (56%)

Query: 342 AKSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISRSVHLTDRQVKIWFQNRRMKLK 401
           AK  RK R  Y+  Q   L + F    YL    R +++  + LT  QVKIWFQN+R K K
Sbjct: 222 AKKLRKPRTIYSSLQLQHLNQRFQHTQYLALPERAQLAAQLGLTQTQVKIWFQNKRSKYK 281

Query: 402 KMNREN 407
           K+ ++N
Sbjct: 282 KLLKQN 287



>gi|1708211|sp|P52952|NK25_HUMAN   Homeobox protein Nkx-2.5 (Homeobox protein NK-2 homolog E)
           (Cardiac-specific homeobox) (Homeobox protein CSX)
          Length = 324

 Score = 53.5 bits (127), Expect = 1e-07
 Identities = 26/68 (38%), Positives = 40/68 (58%)

Query: 342 AKSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISRSVHLTDRQVKIWFQNRRMKLK 401
           A+  RK R  +++ Q  ELE+ F    YL+   R +++  + LT  QVKIWFQNRR K K
Sbjct: 135 ARRRRKPRVLFSQAQVYELERRFKQQRYLSAPERDQLASVLKLTSTQVKIWFQNRRYKCK 194

Query: 402 KMNRENRI 409
           +  ++  +
Sbjct: 195 RQRQDQTL 202



 Score = 35.0 bits (79), Expect = 0.048
 Identities = 26/83 (31%), Positives = 38/83 (45%), Gaps = 6/83 (7%)

Query: 125 QRTRKKRCPYTKYQIRELEREFFFSVYINKEKRLQLSRMLNLTDRQNIKEESSYCLYDSA 184
           +R RK R  +++ Q+ ELER F    Y++  +R QL+ +L LT  Q           +  
Sbjct: 136 RRRRKPRVLFSQAQVYELERRFKQQRYLSAPERDQLASVLKLTSTQ-----VKIWFQNRR 190

Query: 185 DKCPKV-SATAAELAPFPRGPPP 206
            KC +       EL   P  PPP
Sbjct: 191 YKCKRQRQDQTLELVGLPPPPPP 213



>gi|20532295|sp|Q9UIW0|VAX2_HUMAN   Ventral anterior homeobox 2
          Length = 290

 Score = 52.8 bits (125), Expect = 2e-07
 Identities = 24/57 (42%), Positives = 35/57 (61%)

Query: 346 RKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISRSVHLTDRQVKIWFQNRRMKLKK 402
           ++ R  +T  Q   LE EF    Y+    R E++R ++L++ QVK+WFQNRR K KK
Sbjct: 103 KRTRTSFTAEQLYRLEMEFQRCQYVVGRERTELARQLNLSETQVKVWFQNRRTKQKK 159



>gi|19862512|sp|Q04743|EMX2_HUMAN   Homeobox protein EMX2 (Empty spiracles homolog 2) (Empty
           spiracles-like protein 2)
          Length = 252

 Score = 52.8 bits (125), Expect = 2e-07
 Identities = 25/65 (38%), Positives = 38/65 (58%)

Query: 342 AKSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISRSVHLTDRQVKIWFQNRRMKLK 401
           A+  ++ R  ++  Q L LE  F  N Y+    R +++ S+ LT+ QVK+WFQNRR K K
Sbjct: 151 ARKPKRIRTAFSPSQLLRLEHAFEKNHYVVGAERKQLAHSLSLTETQVKVWFQNRRTKFK 210

Query: 402 KMNRE 406
           +   E
Sbjct: 211 RQKLE 215



>gi|6174907|sp|Q99697|PITX2_HUMAN   Pituitary homeobox 2 (RIEG bicoid-related homeobox transcription
           factor) (Solurshin) (ALL1 responsive protein ARP1)
          Length = 317

 Score = 52.0 bits (123), Expect = 4e-07
 Identities = 32/91 (35%), Positives = 47/91 (51%), Gaps = 1/91 (1%)

Query: 325 KDSLGNSKGENAANWLTAKSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISRSVHL 384
           K   G ++   A +    K  R++R  +T  Q  ELE  F  N Y     R EI+   +L
Sbjct: 65  KSQQGKNEDVGAEDPSKKKRQRRQRTHFTSQQLQELEATFQRNRYPDMSTREEIAVWTNL 124

Query: 385 TDRQVKIWFQNRRMKLKKMNRENRIRELTAN 415
           T+ +V++WF+NRR K +K  R N+  EL  N
Sbjct: 125 TEARVRVWFKNRRAKWRKRER-NQQAELCKN 154



 Score = 28.5 bits (62), Expect = 4.5
 Identities = 14/44 (31%), Positives = 26/44 (59%)

Query: 125 QRTRKKRCPYTKYQIRELEREFFFSVYINKEKRLQLSRMLNLTD 168
           +R R++R  +T  Q++ELE  F  + Y +   R +++   NLT+
Sbjct: 83  KRQRRQRTHFTSQQLQELEATFQRNRYPDMSTREEIAVWTNLTE 126



>gi|38605720|sp|P56177|DLX1_HUMAN   Homeobox protein DLX-1
          Length = 255

 Score = 52.0 bits (123), Expect = 4e-07
 Identities = 27/64 (42%), Positives = 35/64 (54%)

Query: 343 KSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISRSVHLTDRQVKIWFQNRRMKLKK 402
           K  RK R  Y   Q   L + F    YL    R E++ S+ LT  QVKIWFQN+R K KK
Sbjct: 126 KKIRKPRTIYCSLQLQALNRRFQQTQYLALPERAELAASLGLTQTQVKIWFQNKRSKFKK 185

Query: 403 MNRE 406
           + ++
Sbjct: 186 LMKQ 189



>gi|12644330|sp|P56179|DLX6_HUMAN   Homeobox protein DLX-6
          Length = 175

 Score = 51.2 bits (121), Expect = 6e-07
 Identities = 27/64 (42%), Positives = 35/64 (54%)

Query: 343 KSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISRSVHLTDRQVKIWFQNRRMKLKK 402
           K  RK R  Y+  Q   L   F    YL    R E++ S+ LT  QVKIWFQN+R K KK
Sbjct: 47  KKIRKPRTIYSSLQLQALNHRFQQTQYLALPERAELAASLGLTQTQVKIWFQNKRSKFKK 106

Query: 403 MNRE 406
           + ++
Sbjct: 107 LLKQ 110



>gi|57015304|sp|Q04741|EMX1_HUMAN   Homeobox protein EMX1 (Empty spiracles homolog 1) (Empty
           spiracles-like protein 1)
          Length = 257

 Score = 51.2 bits (121), Expect = 6e-07
 Identities = 24/65 (36%), Positives = 39/65 (60%)

Query: 342 AKSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISRSVHLTDRQVKIWFQNRRMKLK 401
           A+  ++ R  ++  Q L LE+ F  N Y+    R +++ S+ L++ QVK+WFQNRR K K
Sbjct: 156 ARKPKRIRTAFSPSQLLRLERAFEKNHYVVGAERKQLAGSLSLSETQVKVWFQNRRTKYK 215

Query: 402 KMNRE 406
           +   E
Sbjct: 216 RQKLE 220



>gi|27923733|sp|Q96QS3|ARX_HUMAN   Homeobox protein ARX (Aristaless-related homeobox)
          Length = 562

 Score = 50.8 bits (120), Expect = 8e-07
 Identities = 27/81 (33%), Positives = 45/81 (55%)

Query: 325 KDSLGNSKGENAANWLTAKSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISRSVHL 384
           +DS+  S G ++   L  +  R+ R  +T +Q  ELE+ F    Y     R E++  + L
Sbjct: 308 EDSVCLSAGSDSEEGLLKRKQRRYRTTFTSYQLEELERAFQKTHYPDVFTREELAMRLDL 367

Query: 385 TDRQVKIWFQNRRMKLKKMNR 405
           T+ +V++WFQNRR K +K  +
Sbjct: 368 TEARVQVWFQNRRAKWRKREK 388



 Score = 33.1 bits (74), Expect = 0.18
 Identities = 35/135 (25%), Positives = 53/135 (39%), Gaps = 40/135 (29%)

Query: 125 QRTRKKRCPYTKYQIRELEREFFFSVYINKEKRLQLSRMLNLTDR------QNIKEE--- 175
           ++ R+ R  +T YQ+ ELER F  + Y +   R +L+  L+LT+       QN + +   
Sbjct: 326 RKQRRYRTTFTSYQLEELERAFQKTHYPDVFTREELAMRLDLTEARVQVWFQNRRAKWRK 385

Query: 176 --------------------SSYCLYDSADKCP-----------KVSATAAELAPFPRGP 204
                               +++ L    D  P             +A AA  A FP  P
Sbjct: 386 REKAGAQTHPPGLPFPGPLSATHPLSPYLDASPFPPHHPALDSAWTAAAAAAAAAFPSLP 445

Query: 205 PPDGCALGTSSGVPV 219
           PP G A    SG P+
Sbjct: 446 PPPGSASLPPSGAPL 460



>gi|6093723|sp|O75364|PITX3_HUMAN   Pituitary homeobox 3 (Homeobox protein PITX3)
          Length = 302

 Score = 50.1 bits (118), Expect = 1e-06
 Identities = 26/74 (35%), Positives = 39/74 (52%)

Query: 343 KSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISRSVHLTDRQVKIWFQNRRMKLKK 402
           K  R++R  +T  Q  ELE  F  N Y     R EI+   +LT+ +V++WF+NRR K +K
Sbjct: 60  KKQRRQRTHFTSQQLQELEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRK 119

Query: 403 MNRENRIRELTANF 416
             R  +      +F
Sbjct: 120 RERSQQAELCKGSF 133



 Score = 27.3 bits (59), Expect = 10.0
 Identities = 13/44 (29%), Positives = 26/44 (59%)

Query: 125 QRTRKKRCPYTKYQIRELEREFFFSVYINKEKRLQLSRMLNLTD 168
           ++ R++R  +T  Q++ELE  F  + Y +   R +++   NLT+
Sbjct: 60  KKQRRQRTHFTSQQLQELEATFQRNRYPDMSTREEIAVWTNLTE 103



>gi|3024482|sp|P78337|PITX1_HUMAN   Pituitary homeobox 1 (Hindlimb expressed homeobox protein backfoot)
          Length = 314

 Score = 50.1 bits (118), Expect = 1e-06
 Identities = 25/67 (37%), Positives = 38/67 (56%)

Query: 343 KSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISRSVHLTDRQVKIWFQNRRMKLKK 402
           K  R++R  +T  Q  ELE  F  N Y     R EI+   +LT+ +V++WF+NRR K +K
Sbjct: 87  KKQRRQRTHFTSQQLQELEATFQRNRYPDMSMREEIAVWTNLTEPRVRVWFKNRRAKWRK 146

Query: 403 MNRENRI 409
             R  ++
Sbjct: 147 RERNQQL 153



 Score = 27.3 bits (59), Expect = 10.0
 Identities = 13/44 (29%), Positives = 26/44 (59%)

Query: 125 QRTRKKRCPYTKYQIRELEREFFFSVYINKEKRLQLSRMLNLTD 168
           ++ R++R  +T  Q++ELE  F  + Y +   R +++   NLT+
Sbjct: 87  KKQRRQRTHFTSQQLQELEATFQRNRYPDMSMREEIAVWTNLTE 130



>gi|13626112|sp|Q9H161|ALX4_HUMAN   Homeobox protein aristaless-like 4
          Length = 411

 Score = 50.1 bits (118), Expect = 1e-06
 Identities = 24/72 (33%), Positives = 42/72 (58%)

Query: 346 RKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISRSVHLTDRQVKIWFQNRRMKLKKMNR 405
           R+ R  +T +Q  ELEK F    Y     R +++    LT+ +V++WFQNRR K +K  R
Sbjct: 215 RRNRTTFTSYQLEELEKVFQKTHYPDVYAREQLAMRTDLTEARVQVWFQNRRAKWRKRER 274

Query: 406 ENRIRELTANFN 417
             +++++  +F+
Sbjct: 275 FGQMQQVRTHFS 286



 Score = 30.0 bits (66), Expect = 1.5
 Identities = 15/43 (34%), Positives = 25/43 (58%)

Query: 126 RTRKKRCPYTKYQIRELEREFFFSVYINKEKRLQLSRMLNLTD 168
           + R+ R  +T YQ+ ELE+ F  + Y +   R QL+   +LT+
Sbjct: 213 KKRRNRTTFTSYQLEELEKVFQKTHYPDVYAREQLAMRTDLTE 255



>gi|3023579|sp|Q15699|CRT1_HUMAN   Cartilage homeoprotein 1 (CART-1)
          Length = 326

 Score = 49.3 bits (116), Expect = 2e-06
 Identities = 29/91 (31%), Positives = 48/91 (52%), Gaps = 4/91 (4%)

Query: 326 DSLGNSKGENAANWLTAKSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISRSVHLT 385
           D LG+    N    +++   R+ R  +T  Q  ELEK F    Y     R +++    LT
Sbjct: 117 DELGDKCDTN----VSSSKKRRHRTTFTSLQLEELEKVFQKTHYPDVYVREQLALRTELT 172

Query: 386 DRQVKIWFQNRRMKLKKMNRENRIRELTANF 416
           + +V++WFQNRR K +K  R  +I++  ++F
Sbjct: 173 EARVQVWFQNRRAKWRKRERYGQIQQAKSHF 203



>gi|2833256|sp|Q14774|HLX1_HUMAN   Homeobox protein HLX1 (Homeobox protein HB24)
          Length = 488

 Score = 49.3 bits (116), Expect = 2e-06
 Identities = 23/51 (45%), Positives = 32/51 (62%)

Query: 349 RCPYTKHQTLELEKEFLFNMYLTRERRLEISRSVHLTDRQVKIWFQNRRMK 399
           R  ++  Q   LEK F    Y+T+  R +++  + LTD QVK+WFQNRRMK
Sbjct: 280 RAVFSNLQRKGLEKRFEIQKYVTKPDRKQLAAMLGLTDAQVKVWFQNRRMK 330



 Score = 32.7 bits (73), Expect = 0.24
 Identities = 16/40 (40%), Positives = 22/40 (55%)

Query: 131 RCPYTKYQIRELEREFFFSVYINKEKRLQLSRMLNLTDRQ 170
           R  ++  Q + LE+ F    Y+ K  R QL+ ML LTD Q
Sbjct: 280 RAVFSNLQRKGLEKRFEIQKYVTKPDRKQLAAMLGLTDAQ 319



>gi|6016211|sp|P78426|NK61_HUMAN   Homeobox protein Nkx-6.1
          Length = 367

 Score = 48.5 bits (114), Expect = 4e-06
 Identities = 26/65 (40%), Positives = 37/65 (56%), Gaps = 2/65 (3%)

Query: 340 LTAKSGRKK--RCPYTKHQTLELEKEFLFNMYLTRERRLEISRSVHLTDRQVKIWFQNRR 397
           L  K G++K  R  ++  Q   LEK F    YL    R  ++ S+ +T+ QVK+WFQNRR
Sbjct: 229 LLDKDGKRKHTRPTFSGQQIFALEKTFEQTKYLAGPERARLAYSLGMTESQVKVWFQNRR 288

Query: 398 MKLKK 402
            K +K
Sbjct: 289 TKWRK 293



>gi|13626107|sp|O95076|ALX3_HUMAN   Homeobox protein aristaless-like 3 (Proline-rich transcription
           factor ALX3)
          Length = 343

 Score = 46.6 bits (109), Expect = 2e-05
 Identities = 24/66 (36%), Positives = 37/66 (56%)

Query: 346 RKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISRSVHLTDRQVKIWFQNRRMKLKKMNR 405
           R+ R  ++  Q  ELEK F    Y     R +++    LT+ +V++WFQNRR K +K  R
Sbjct: 154 RRNRTTFSTFQLEELEKVFQKTHYPDVYAREQLALRTDLTEARVQVWFQNRRAKWRKRER 213

Query: 406 ENRIRE 411
             +I+E
Sbjct: 214 YGKIQE 219



>gi|8134644|sp|Q99453|PHX2B_HUMAN   Paired mesoderm homeobox protein 2B (Paired-like homeobox 2B)
           (PHOX2B homeodomain protein) (Neuroblastoma Phox)
           (NBPhox)
          Length = 314

 Score = 46.6 bits (109), Expect = 2e-05
 Identities = 23/60 (38%), Positives = 34/60 (56%)

Query: 346 RKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISRSVHLTDRQVKIWFQNRRMKLKKMNR 405
           R+ R  +T  Q  ELE+ F    Y     R E++  + LT+ +V++WFQNRR K +K  R
Sbjct: 99  RRIRTTFTSAQLKELERVFAETHYPDIYTREELALKIDLTEARVQVWFQNRRAKFRKQER 158



 Score = 28.1 bits (61), Expect = 5.8
 Identities = 18/73 (24%), Positives = 39/73 (53%), Gaps = 1/73 (1%)

Query: 125 QRTRKKRCPYTKYQIRELEREFFFSVYINKEKRLQLSRMLNLTD-RQNIKEESSYCLYDS 183
           ++ R+ R  +T  Q++ELER F  + Y +   R +L+  ++LT+ R  +  ++    +  
Sbjct: 96  RKQRRIRTTFTSAQLKELERVFAETHYPDIYTREELALKIDLTEARVQVWFQNRRAKFRK 155

Query: 184 ADKCPKVSATAAE 196
            ++    +A AA+
Sbjct: 156 QERAAAAAAAAAK 168



>gi|8134640|sp|O14813|PHX2A_HUMAN   Paired mesoderm homeobox protein 2A (Paired-like homeobox 2A)
           (Aristaless homeobox protein homolog) (ARIX1 homeodomain
           protein)
          Length = 284

 Score = 46.6 bits (109), Expect = 2e-05
 Identities = 23/60 (38%), Positives = 34/60 (56%)

Query: 346 RKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISRSVHLTDRQVKIWFQNRRMKLKKMNR 405
           R+ R  +T  Q  ELE+ F    Y     R E++  + LT+ +V++WFQNRR K +K  R
Sbjct: 91  RRIRTTFTSAQLKELERVFAETHYPDIYTREELALKIDLTEARVQVWFQNRRAKFRKQER 150



 Score = 27.3 bits (59), Expect = 10.0
 Identities = 14/44 (31%), Positives = 27/44 (61%)

Query: 125 QRTRKKRCPYTKYQIRELEREFFFSVYINKEKRLQLSRMLNLTD 168
           ++ R+ R  +T  Q++ELER F  + Y +   R +L+  ++LT+
Sbjct: 88  RKQRRIRTTFTSAQLKELERVFAETHYPDIYTREELALKIDLTE 131



>gi|123402|sp|P09086|PO2F2_HUMAN   POU domain, class 2, transcription factor 2 (Octamer-binding
           transcription factor 2) (Oct-2) (OTF-2)
           (Lymphoid-restricted immunoglobulin octamer binding
           protein NF-A2)
          Length = 479

 Score = 46.2 bits (108), Expect = 2e-05
 Identities = 23/59 (38%), Positives = 32/59 (54%)

Query: 346 RKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISRSVHLTDRQVKIWFQNRRMKLKKMN 404
           RKKR     +    LEK FL N   T E  L I+  +H+    +++WF NRR K K++N
Sbjct: 298 RKKRTSIETNVRFALEKSFLANQKPTSEEILLIAEQLHMEKEVIRVWFCNRRQKEKRIN 356



>gi|7531125|sp|P56915|GSC_HUMAN   Homeobox protein goosecoid
          Length = 252

 Score = 45.4 bits (106), Expect = 4e-05
 Identities = 23/70 (32%), Positives = 37/70 (52%)

Query: 338 NWLTAKSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISRSVHLTDRQVKIWFQNRR 397
           N L  +  R+ R  +T  Q   LE  F    Y     R +++R VHL + +V++WF+NRR
Sbjct: 148 NQLHCRRKRRHRTIFTDEQLEALENLFQETKYPDVGTREQLARKVHLREEKVEVWFKNRR 207

Query: 398 MKLKKMNREN 407
            K ++  R +
Sbjct: 208 AKWRRQKRSS 217



>gi|48428084|sp|Q8N693|ESX1L_HUMAN   Extraembryonic, spermatogenesis, homeobox 1-like protein
          Length = 406

 Score = 44.7 bits (104), Expect = 6e-05
 Identities = 23/65 (35%), Positives = 38/65 (58%)

Query: 346 RKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISRSVHLTDRQVKIWFQNRRMKLKKMNR 405
           R++R  +T+ Q  ELE  F  + Y     R  ++  ++LT+ +V++WFQNRR K K+  R
Sbjct: 140 RRRRTAFTQFQLQELENFFDESQYPDVVARERLAARLNLTEDRVQVWFQNRRAKWKRNQR 199

Query: 406 ENRIR 410
              +R
Sbjct: 200 VLMLR 204



 Score = 34.7 bits (78), Expect = 0.062
 Identities = 17/44 (38%), Positives = 29/44 (65%)

Query: 125 QRTRKKRCPYTKYQIRELEREFFFSVYINKEKRLQLSRMLNLTD 168
           +R R++R  +T++Q++ELE  F  S Y +   R +L+  LNLT+
Sbjct: 137 ERKRRRRTAFTQFQLQELENFFDESQYPDVVARERLAARLNLTE 180



>gi|17380297|sp|Q9Y2V3|RX_HUMAN   Retinal homeobox protein Rx (Retina and anterior neural fold
           homeobox protein)
          Length = 346

 Score = 44.7 bits (104), Expect = 6e-05
 Identities = 22/63 (34%), Positives = 37/63 (58%)

Query: 343 KSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISRSVHLTDRQVKIWFQNRRMKLKK 402
           K  R+ R  +T +Q  ELE+ F  + Y     R E++  V+L + +V++WFQNRR K ++
Sbjct: 134 KKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAGKVNLPEVRVQVWFQNRRAKWRR 193

Query: 403 MNR 405
             +
Sbjct: 194 QEK 196



 Score = 40.8 bits (94), Expect = 9e-04
 Identities = 39/118 (33%), Positives = 52/118 (44%), Gaps = 21/118 (17%)

Query: 125 QRTRKKRCPYTKYQIRELEREFFFSVYINKEKRLQLSRMLNLTD---------------R 169
           ++ R+ R  +T YQ+ ELER F  S Y +   R +L+  +NL +               R
Sbjct: 134 KKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAGKVNLPEVRVQVWFQNRRAKWRR 193

Query: 170 QNIKEESSYCLYDSADKCPKVSATAAELAPFPRGP----PPDGCALGTSS--GVPVPG 221
           Q   E SS  L DS       S  +A L+P   GP     P G AL   S  G P+PG
Sbjct: 194 QEKLEVSSMKLQDSPLLSFSRSPPSATLSPLGAGPGSGGGPAGGALPLESWLGPPLPG 251



>gi|18202099|sp|O60902|SHOX2_HUMAN   Short stature homeobox protein 2 (Paired-related homeobox protein
           SHOT) (Homeobox protein Og12X)
          Length = 331

 Score = 44.7 bits (104), Expect = 6e-05
 Identities = 29/87 (33%), Positives = 47/87 (54%), Gaps = 3/87 (3%)

Query: 325 KDSLGNSKGENAANWLTAKSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISRSVHL 384
           KD   ++KG         K  R+ R  +T  Q  ELE+ F    Y     R E+S+ + L
Sbjct: 121 KDRKEDAKGMEDEGQTKIKQ-RRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGL 179

Query: 385 TDRQVKIWFQNRRMKLKKMNRENRIRE 411
           ++ +V++WFQNRR K +K  +EN++ +
Sbjct: 180 SEARVQVWFQNRRAKCRK--QENQLHK 204



>gi|8247951|sp|P23759|PAX7_HUMAN   Paired box protein Pax-7 (HUP1)
          Length = 520

 Score = 43.9 bits (102), Expect = 1e-04
 Identities = 22/64 (34%), Positives = 35/64 (54%)

Query: 346 RKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISRSVHLTDRQVKIWFQNRRMKLKKMNR 405
           R+ R  +T  Q  ELEK F    Y     R E+++   LT+ +V++WF NRR + +K   
Sbjct: 218 RRSRTTFTAEQLEELEKAFERTHYPDIYTREELAQRTKLTEARVQVWFSNRRARWRKQAG 277

Query: 406 ENRI 409
            N++
Sbjct: 278 ANQL 281



>gi|12644475|sp|Q99811|PRRX2_HUMAN   Paired mesoderm homeobox protein 2 (PRX-2) (Paired related homeobox
           protein 2)
          Length = 253

 Score = 43.9 bits (102), Expect = 1e-04
 Identities = 22/63 (34%), Positives = 35/63 (55%)

Query: 343 KSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISRSVHLTDRQVKIWFQNRRMKLKK 402
           K  R+ R  +   Q   LE+ F    Y     R E++R V+L++ +V++WFQNRR K ++
Sbjct: 102 KKQRRNRTTFNSSQLQALERVFERTHYPDAFVREELARRVNLSEARVQVWFQNRRAKFRR 161

Query: 403 MNR 405
             R
Sbjct: 162 NER 164



>gi|6831676|sp|O15266|SHOX_HUMAN   Short stature homeobox protein (Short stature homeobox containing
           protein) (Pseudoautosomal homeobox containing osteogenic
           protein)
          Length = 292

 Score = 43.5 bits (101), Expect = 1e-04
 Identities = 22/61 (36%), Positives = 35/61 (57%)

Query: 346 RKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISRSVHLTDRQVKIWFQNRRMKLKKMNR 405
           R+ R  +T  Q  ELE+ F    Y     R E+S+ + L++ +V++WFQNRR K +K   
Sbjct: 118 RRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQVWFQNRRAKCRKQEN 177

Query: 406 E 406
           +
Sbjct: 178 Q 178



>gi|3287764|sp|O43186|CRX_HUMAN   Cone-rod homeobox protein
          Length = 299

 Score = 43.5 bits (101), Expect = 1e-04
 Identities = 19/63 (30%), Positives = 37/63 (58%)

Query: 346 RKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISRSVHLTDRQVKIWFQNRRMKLKKMNR 405
           R++R  +T+ Q  ELE  F    Y     R E++  ++L + +V++WF+NRR K ++  +
Sbjct: 40  RRERTTFTRSQLEELEALFAKTQYPDVYAREEVALKINLPESRVQVWFKNRRAKCRQQRQ 99

Query: 406 ENR 408
           + +
Sbjct: 100 QQK 102



>gi|6174916|sp|P54821|PRRX1_HUMAN   Paired mesoderm homeobox protein 1 (PRX-1) (Paired related homeobox
           protein 1) (Homeobox protein PHOX1)
          Length = 245

 Score = 43.1 bits (100), Expect = 2e-04
 Identities = 21/60 (35%), Positives = 34/60 (56%)

Query: 346 RKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISRSVHLTDRQVKIWFQNRRMKLKKMNR 405
           R+ R  +   Q   LE+ F    Y     R +++R V+LT+ +V++WFQNRR K ++  R
Sbjct: 95  RRNRTTFNSSQLQALERVFERTHYPDAFVREDLARRVNLTEARVQVWFQNRRAKFRRNER 154



 Score = 27.7 bits (60), Expect = 7.6
 Identities = 26/106 (24%), Positives = 43/106 (40%), Gaps = 15/106 (14%)

Query: 125 QRTRKKRCPYTKYQIRELEREFFFSVYINKEKRLQLSRMLNLTD----------RQNIKE 174
           ++ R+ R  +   Q++ LER F  + Y +   R  L+R +NLT+          R   + 
Sbjct: 92  RKQRRNRTTFNSSQLQALERVFERTHYPDAFVREDLARRVNLTEARVQVWFQNRRAKFRR 151

Query: 175 ESSYCLYDSADKCPK-----VSATAAELAPFPRGPPPDGCALGTSS 215
                L +      K     V+A    + P P   P D  + GT+S
Sbjct: 152 NERAMLANKNASLLKSYSGDVTAVEQPIVPRPAPRPTDYLSWGTAS 197



>gi|25009572|sp|Q9NZR4|VSX1_HUMAN   Visual system homeobox 1 (Transcription factor VSX1) (Retinal inner
           nuclear layer homeobox protein) (Homeodomain protein
           RINX)
          Length = 365

 Score = 42.7 bits (99), Expect = 2e-04
 Identities = 28/85 (32%), Positives = 43/85 (50%), Gaps = 3/85 (3%)

Query: 325 KDSLGNSKGE-NAANWLTAKSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISRSVH 383
           +DS    + +  A+  L  +  R+ R  +T HQ  ELEK F    Y     R  ++    
Sbjct: 143 EDSQSEDRNDLKASPTLGKRKKRRHRTVFTAHQLEELEKAFSEAHYPDVYAREMLAVKTE 202

Query: 384 LTDRQVKIWFQNRRMKLKKMNRENR 408
           L + ++++WFQNRR K +K  RE R
Sbjct: 203 LPEDRIQVWFQNRRAKWRK--REKR 225



>gi|1172022|sp|P23760|PAX3_HUMAN   Paired box protein Pax-3 (HUP2)
          Length = 479

 Score = 42.7 bits (99), Expect = 2e-04
 Identities = 21/64 (32%), Positives = 35/64 (54%)

Query: 346 RKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISRSVHLTDRQVKIWFQNRRMKLKKMNR 405
           R+ R  +T  Q  ELE+ F    Y     R E+++   LT+ +V++WF NRR + +K   
Sbjct: 220 RRSRTTFTAEQLEELERAFERTHYPDIYTREELAQRAKLTEARVQVWFSNRRARWRKQAG 279

Query: 406 ENRI 409
            N++
Sbjct: 280 ANQL 283



>gi|37537960|sp|Q8NHV9|PEPP1_HUMAN   Paired-like homeobox protein PEPP-1 (Ovary-, testis- and
           epididymis-expressed gene protein)
          Length = 184

 Score = 42.0 bits (97), Expect = 4e-04
 Identities = 19/61 (31%), Positives = 35/61 (57%)

Query: 346 RKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISRSVHLTDRQVKIWFQNRRMKLKKMNR 405
           R +R  +T  Q  ELE  F    Y     R E++ ++ +T+ +V++WF+N+R + ++  R
Sbjct: 104 RTRRTKFTLLQVEELESVFRHTQYPDVPTRRELAENLGVTEDKVRVWFKNKRARCRRHQR 163

Query: 406 E 406
           E
Sbjct: 164 E 164



>gi|6093787|sp|O75360|PROP1_HUMAN   Homeobox protein prophet of Pit-1 (PROP-1) (Pituitary specific
           homeodomain factor)
          Length = 226

 Score = 42.0 bits (97), Expect = 4e-04
 Identities = 21/62 (33%), Positives = 34/62 (54%)

Query: 344 SGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISRSVHLTDRQVKIWFQNRRMKLKKM 403
           S R+ R  ++  Q  +LE  F  N Y     R  ++R   L++ ++++WFQNRR K +K 
Sbjct: 68  SRRRHRTTFSPVQLEQLESAFGRNQYPDIWARESLARDTGLSEARIQVWFQNRRAKQRKQ 127

Query: 404 NR 405
            R
Sbjct: 128 ER 129



>gi|17374365|sp|P58304|CHX10_HUMAN   Homeobox protein CHX10 (Ceh-10 homeodomain containing homolog)
          Length = 361

 Score = 41.6 bits (96), Expect = 5e-04
 Identities = 22/72 (30%), Positives = 37/72 (51%)

Query: 334 ENAANWLTAKSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISRSVHLTDRQVKIWF 393
           ++A N    +  R+ R  +T +Q  ELEK F    Y     R  ++    L + ++++WF
Sbjct: 137 KSALNQTKKRKKRRHRTIFTSYQLEELEKAFNEAHYPDVYAREMLAMKTELPEDRIQVWF 196

Query: 394 QNRRMKLKKMNR 405
           QNRR K +K  +
Sbjct: 197 QNRRAKWRKREK 208



 Score = 28.1 bits (61), Expect = 5.8
 Identities = 20/73 (27%), Positives = 35/73 (47%), Gaps = 1/73 (1%)

Query: 125 QRTRKKRCPYTKYQIRELEREFFFSVYINKEKRLQLSRMLNL-TDRQNIKEESSYCLYDS 183
           ++ R+ R  +T YQ+ ELE+ F  + Y +   R  L+    L  DR  +  ++    +  
Sbjct: 146 RKKRRHRTIFTSYQLEELEKAFNEAHYPDVYAREMLAMKTELPEDRIQVWFQNRRAKWRK 205

Query: 184 ADKCPKVSATAAE 196
            +KC   S+  AE
Sbjct: 206 REKCWGRSSVMAE 218



>gi|28202257|sp|P14859|PO2F1_HUMAN   POU domain, class 2, transcription factor 1 (Octamer-binding
           transcription factor 1) (Oct-1) (OTF-1) (NF-A1)
          Length = 743

 Score = 40.8 bits (94), Expect = 9e-04
 Identities = 21/59 (35%), Positives = 32/59 (54%)

Query: 346 RKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISRSVHLTDRQVKIWFQNRRMKLKKMN 404
           RKKR     +  + LEK FL N   T E    I+  +++    +++WF NRR K K++N
Sbjct: 380 RKKRTSIETNIRVALEKSFLENQKPTSEEITMIADQLNMEKEVIRVWFCNRRQKEKRIN 438



>gi|417427|sp|P32243|OTX2_HUMAN   Homeobox protein OTX2
          Length = 289

 Score = 40.4 bits (93), Expect = 0.001
 Identities = 19/68 (27%), Positives = 38/68 (55%)

Query: 341 TAKSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISRSVHLTDRQVKIWFQNRRMKL 400
           T +  R++R  +T+ Q   LE  F    Y     R E++  ++L + +V++WF+NRR K 
Sbjct: 34  TPRKQRRERTTFTRAQLDVLEALFAKTRYPDIFMREEVALKINLPESRVQVWFKNRRAKC 93

Query: 401 KKMNRENR 408
           ++  ++ +
Sbjct: 94  RQQQQQQQ 101



>gi|37537987|sp|Q9BQY4|PEP2_HUMAN   Paired-like homeobox protein PEPP-2 (Testis homeobox gene 1)
          Length = 288

 Score = 40.0 bits (92), Expect = 0.001
 Identities = 20/61 (32%), Positives = 35/61 (57%)

Query: 352 YTKHQTLELEKEFLFNMYLTRERRLEISRSVHLTDRQVKIWFQNRRMKLKKMNRENRIRE 411
           +T  Q  ELE+ F    + +   R  ++RS+++T+  V+IWF+NRR K ++  R    R 
Sbjct: 141 FTPLQLQELERIFQREQFPSEFLRRRLARSMNVTELAVQIWFENRRAKWRRHQRALMARN 200

Query: 412 L 412
           +
Sbjct: 201 M 201



>gi|417425|sp|P32242|OTX1_HUMAN   Homeobox protein OTX1
          Length = 354

 Score = 39.7 bits (91), Expect = 0.002
 Identities = 19/65 (29%), Positives = 36/65 (55%)

Query: 341 TAKSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISRSVHLTDRQVKIWFQNRRMKL 400
           T +  R++R  +T+ Q   LE  F    Y     R E++  ++L + +V++WF+NRR K 
Sbjct: 34  TPRKQRRERTTFTRSQLDVLEALFAKTRYPDIFMREEVALKINLPESRVQVWFKNRRAKC 93

Query: 401 KKMNR 405
           ++  +
Sbjct: 94  RQQQQ 98



>gi|51702790|sp|P63015|PAX6_MOUSE   Paired box protein Pax-6 (Oculorhombin)
 gi|6174889|sp|P26367|PAX6_HUMAN   Paired box protein Pax-6 (Oculorhombin) (Aniridia, type II protein)
          Length = 422

 Score = 38.9 bits (89), Expect = 0.003
 Identities = 19/70 (27%), Positives = 35/70 (50%)

Query: 346 RKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISRSVHLTDRQVKIWFQNRRMKLKKMNR 405
           ++ R  +T+ Q   LEKEF    Y     R  ++  + L + ++++WF NRR K ++  +
Sbjct: 211 QRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEK 270

Query: 406 ENRIRELTAN 415
               R   +N
Sbjct: 271 LRNQRRQASN 280



>gi|6685480|sp|O15499|GSCL_HUMAN   Homeobox protein goosecoid-like (GSC-2)
          Length = 205

 Score = 38.5 bits (88), Expect = 0.004
 Identities = 18/60 (30%), Positives = 32/60 (53%)

Query: 346 RKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISRSVHLTDRQVKIWFQNRRMKLKKMNR 405
           R+ R  +++ Q   LE  F+ N Y     R  ++  + L + +V++WF+NRR K +   R
Sbjct: 127 RRHRTIFSEEQLQALEALFVQNQYPDVSTRERLAGRIRLREERVEVWFKNRRAKWRHQKR 186



>gi|3914276|sp|O43316|PAX4_HUMAN   Paired box protein Pax-4
          Length = 350

 Score = 38.5 bits (88), Expect = 0.004
 Identities = 18/62 (29%), Positives = 32/62 (51%)

Query: 344 SGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISRSVHLTDRQVKIWFQNRRMKLKKM 403
           +G + R  ++  Q   LEKEF    Y     R +++ +  L +  V++WF NRR K ++ 
Sbjct: 169 TGHRNRTIFSPSQAEALEKEFQRGQYPDSVARGKLATATSLPEDTVRVWFSNRRAKWRRQ 228

Query: 404 NR 405
            +
Sbjct: 229 EK 230



>gi|18202938|sp|Q9H2C1|LHX5_HUMAN   LIM/homeobox protein Lhx5
          Length = 402

 Score = 38.1 bits (87), Expect = 0.006
 Identities = 22/65 (33%), Positives = 35/65 (53%), Gaps = 3/65 (4%)

Query: 344 SGRKKRCPYTKHQTLELEK---EFLFNMYLTRERRLEISRSVHLTDRQVKIWFQNRRMKL 400
           SG K+R P T  +  +LE     F      TR  R ++++   L  R +++WFQNRR K 
Sbjct: 176 SGTKRRGPRTTIKAKQLETLKAAFAATPKPTRHIREQLAQETGLNMRVIQVWFQNRRSKE 235

Query: 401 KKMNR 405
           ++M +
Sbjct: 236 RRMKQ 240



>gi|37999770|sp|Q9BYU1|PBX4_HUMAN   Pre-B-cell leukemia transcription factor-4 (Homeobox protein PBX4)
          Length = 330

 Score = 38.1 bits (87), Expect = 0.006
 Identities = 23/60 (38%), Positives = 34/60 (56%), Gaps = 3/60 (5%)

Query: 346 RKKRCPYTKHQTLELEKEF---LFNMYLTRERRLEISRSVHLTDRQVKIWFQNRRMKLKK 402
           R+KR  ++K  T  L + F   L N Y + E + E++R   LT  QV  WF N+R++ KK
Sbjct: 167 RRKRRNFSKQATEVLNEYFYSHLNNPYPSEEAKEELARKGGLTISQVSNWFGNKRIRYKK 226



>gi|18202510|sp|Q15911|ATBF1_HUMAN   Alpha-fetoprotein enhancer binding protein (AT motif-binding factor)
            (AT-binding transcription factor 1)
          Length = 3703

 Score = 37.7 bits (86), Expect = 0.007
 Identities = 22/65 (33%), Positives = 34/65 (52%), Gaps = 1/65 (1%)

Query: 344  SGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISRSVHLTDRQVKIWFQNRRMKLKKM 403
            S R  R  +T +Q   L+  F  N Y   +   ++S  ++L  R + +WFQN R K +K 
Sbjct: 2241 SKRSSRTRFTDYQLRVLQDFFDANAYPKDDEFEQLSNLLNLPTRVIVVWFQNARQKARK- 2299

Query: 404  NRENR 408
            N EN+
Sbjct: 2300 NYENQ 2304



 Score = 33.5 bits (75), Expect = 0.14
 Identities = 24/74 (32%), Positives = 36/74 (48%), Gaps = 2/74 (2%)

Query: 331  SKGENAANWLTAKSGRKKRC--PYTKHQTLELEKEFLFNMYLTRERRLEISRSVHLTDRQ 388
            S GEN +     +  R KR     T  Q   L +++L +   TR+    I+  V L  R 
Sbjct: 2625 SPGENDSGTGGEEPQRDKRLRTTITPEQLEILYQKYLLDSNPTRKMLDHIAHEVGLKKRV 2684

Query: 389  VKIWFQNRRMKLKK 402
            V++WFQN R + +K
Sbjct: 2685 VQVWFQNTRARERK 2698



 Score = 30.0 bits (66), Expect = 1.5
 Identities = 16/42 (38%), Positives = 23/42 (54%)

Query: 128  RKKRCPYTKYQIRELEREFFFSVYINKEKRLQLSRMLNLTDR 169
            R  R  +T YQ+R L+  F  + Y   ++  QLS +LNL  R
Sbjct: 2243 RSSRTRFTDYQLRVLQDFFDANAYPKDDEFEQLSNLLNLPTR 2284



 Score = 28.1 bits (61), Expect = 5.8
 Identities = 16/68 (23%), Positives = 32/68 (47%)

Query: 340  LTAKSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISRSVHLTDRQVKIWFQNRRMK 399
            L  +  ++ R   T  Q   L + F  N   + E+  E++    L  + +K WF+N   K
Sbjct: 2140 LLQQQNKRPRTRITDDQLRVLRQYFDINNSPSEEQIKEMADKSGLPQKVIKHWFRNTLFK 2199

Query: 400  LKKMNREN 407
             ++ N+++
Sbjct: 2200 ERQRNKDS 2207



 Score = 27.7 bits (60), Expect = 7.6
 Identities = 25/83 (30%), Positives = 36/83 (43%), Gaps = 7/83 (8%)

Query: 326  DSLGNSKGENAANWLTAKSGRKKRCPYTKHQTLELEKEFL---FNMYLTRERRLE---IS 379
            D    S G + +   +  SG +      + Q   L+ + L   FN Y T    LE   + 
Sbjct: 2922 DPCSPSPGASGSAGKSGDSGDRPGQKRFRTQMTNLQLKVLKSCFNDYRT-PTMLECEVLG 2980

Query: 380  RSVHLTDRQVKIWFQNRRMKLKK 402
              + L  R V++WFQN R K KK
Sbjct: 2981 NDIGLPKRVVQVWFQNARAKEKK 3003



>gi|730281|sp|P40426|PBX3_HUMAN   Pre-B-cell leukemia transcription factor-3 (Homeobox protein PBX3)
          Length = 434

 Score = 37.4 bits (85), Expect = 0.010
 Identities = 21/60 (35%), Positives = 34/60 (56%), Gaps = 3/60 (5%)

Query: 346 RKKRCPYTKHQTLELEKEF---LFNMYLTRERRLEISRSVHLTDRQVKIWFQNRRMKLKK 402
           R+KR  ++K  T  L + F   L N Y + E + E+++   +T  QV  WF N+R++ KK
Sbjct: 236 RRKRRNFSKQATEILNEYFYSHLSNPYPSEEAKEELAKKCSITVSQVSNWFGNKRIRYKK 295



>gi|1352729|sp|P40425|PBX2_HUMAN   Pre-B-cell leukemia transcription factor-2 (Homeobox protein PBX2)
           (G17 protein)
          Length = 430

 Score = 37.4 bits (85), Expect = 0.010
 Identities = 21/60 (35%), Positives = 34/60 (56%), Gaps = 3/60 (5%)

Query: 346 RKKRCPYTKHQTLELEKEF---LFNMYLTRERRLEISRSVHLTDRQVKIWFQNRRMKLKK 402
           R+KR  ++K  T  L + F   L N Y + E + E+++   +T  QV  WF N+R++ KK
Sbjct: 245 RRKRRNFSKQATEVLNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKK 304



>gi|28201861|sp|Q9UKI9|PO2F3_HUMAN   POU domain, class 2, transcription factor 3 (Octamer-binding
           transcription factor 11) (Oct-11) (Transcription factor
           Skn-1) (PLA-1 protein)
          Length = 436

 Score = 37.4 bits (85), Expect = 0.010
 Identities = 21/59 (35%), Positives = 30/59 (50%)

Query: 346 RKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISRSVHLTDRQVKIWFQNRRMKLKKMN 404
           RKKR     +  L LEK F  N   + E    I+  + +    V++WF NRR K K++N
Sbjct: 282 RKKRTSIETNIRLTLEKRFQDNPKPSSEEISMIAEQLSMEKEVVRVWFCNRRQKEKRIN 340



>gi|60416412|sp|P48742|LHX1_HUMAN   LIM/homeobox protein Lhx1 (LIM homeobox protein 1) (Homeobox
           protein Lim-1)
          Length = 406

 Score = 36.6 bits (83), Expect = 0.016
 Identities = 21/64 (32%), Positives = 34/64 (53%), Gaps = 3/64 (4%)

Query: 345 GRKKRCPYTKHQTLELEK---EFLFNMYLTRERRLEISRSVHLTDRQVKIWFQNRRMKLK 401
           G K+R P T  +  +LE     F      TR  R ++++   L  R +++WFQNRR K +
Sbjct: 177 GAKRRGPRTTIKAKQLETLKAAFAATPKPTRHIREQLAQETGLNMRVIQVWFQNRRSKER 236

Query: 402 KMNR 405
           +M +
Sbjct: 237 RMKQ 240



>gi|20141754|sp|P41778|PBX1_MOUSE   Pre-B-cell leukemia transcription factor-1 (Homeobox protein PBX1)
 gi|730279|sp|P40424|PBX1_HUMAN   Pre-B-cell leukemia transcription factor-1 (Homeobox protein PBX1)
           (Homeobox protein PRL)
          Length = 430

 Score = 36.6 bits (83), Expect = 0.016
 Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 3/60 (5%)

Query: 346 RKKRCPYTKHQTLELEKEF---LFNMYLTRERRLEISRSVHLTDRQVKIWFQNRRMKLKK 402
           R+KR  + K  T  L + F   L N Y + E + E+++   +T  QV  WF N+R++ KK
Sbjct: 234 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKK 293



>gi|27923801|sp|Q8TE12|LMX1A_HUMAN   LIM homeobox transcription factor 1 alpha (LIM/homeobox protein
           LMX1A) (LIM-homeobox protein 1.1) (LMX-1.1)
          Length = 382

 Score = 35.8 bits (81), Expect = 0.028
 Identities = 24/84 (28%), Positives = 39/84 (46%), Gaps = 1/84 (1%)

Query: 325 KDSLGNSKGENAANWLTAKSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISRSVHL 384
           K + G  KG  A      K  ++ R   T  Q    +  F  +    R+ R  ++    L
Sbjct: 176 KSAHGAGKG-TAEEGKDHKRPKRPRTILTTQQRRAFKASFEVSSKPCRKVRETLAAETGL 234

Query: 385 TDRQVKIWFQNRRMKLKKMNRENR 408
           + R V++WFQN+R K+KK+ R  +
Sbjct: 235 SVRVVQVWFQNQRAKMKKLARRQQ 258



>gi|8247930|sp|O60663|LMX1B_HUMAN   LIM homeobox transcription factor 1 beta (LIM/homeobox protein
           LMX1B) (LIM-homeobox protein 1.2) (LMX-1.2)
          Length = 379

 Score = 35.8 bits (81), Expect = 0.028
 Identities = 23/91 (25%), Positives = 44/91 (48%), Gaps = 6/91 (6%)

Query: 331 SKGENAANWLTAKSGRKKRCP------YTKHQTLELEKEFLFNMYLTRERRLEISRSVHL 384
           +KG+ + +  +   G+  R P       T  Q    +  F  +    R+ R  ++    L
Sbjct: 176 AKGQGSQSKGSGDDGKDPRRPKRPRTILTTQQRRAFKASFEVSSKPCRKVRETLAAETGL 235

Query: 385 TDRQVKIWFQNRRMKLKKMNRENRIRELTAN 415
           + R V++WFQN+R K+KK+ R ++ ++   N
Sbjct: 236 SVRVVQVWFQNQRAKMKKLARRHQQQQEQQN 266



>gi|12643415|sp|Q9UBR4|LHX3_HUMAN   LIM/homeobox protein Lhx3
          Length = 397

 Score = 34.7 bits (78), Expect = 0.062
 Identities = 22/76 (28%), Positives = 38/76 (50%), Gaps = 6/76 (7%)

Query: 337 ANWLTAK------SGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISRSVHLTDRQVK 390
           A++ TAK      + ++ R   T  Q   L+  +  +    R  R ++S    L  R V+
Sbjct: 143 ADYETAKQREAEATAKRPRTTITAKQLETLKSAYNTSPKPARHVREQLSSETGLDMRVVQ 202

Query: 391 IWFQNRRMKLKKMNRE 406
           +WFQNRR K K++ ++
Sbjct: 203 VWFQNRRAKEKRLKKD 218



>gi|2495306|sp|Q14863|PO6F1_HUMAN   POU domain, class 6, transcription factor 1 (mPOU homeobox protein)
           (Brain-specific homeobox/POU domain protein 5) (Brain-5)
           (Brn-5 protein)
          Length = 301

 Score = 34.7 bits (78), Expect = 0.062
 Identities = 19/62 (30%), Positives = 30/62 (48%)

Query: 346 RKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISRSVHLTDRQVKIWFQNRRMKLKKMNR 405
           RK+R  +T      L   F  N   T +   EI++ ++     V++WF NRR  LK  ++
Sbjct: 235 RKRRTSFTPQAIEALNAYFEKNPLPTGQEITEIAKELNYDREVVRVWFCNRRQTLKNTSK 294

Query: 406 EN 407
            N
Sbjct: 295 LN 296



>gi|12230578|sp|O95475|SIX6_HUMAN   Homeobox protein SIX6 (Sine oculis homeobox homolog 6) (Optic
           homeobox 2) (Homeodomain protein OPTX2)
          Length = 246

 Score = 34.3 bits (77), Expect = 0.082
 Identities = 18/59 (30%), Positives = 35/59 (59%), Gaps = 1/59 (1%)

Query: 354 KHQTLELEKE-FLFNMYLTRERRLEISRSVHLTDRQVKIWFQNRRMKLKKMNRENRIRE 411
           K +T  L +E +L + Y    ++ E++++  LT  QV  WF+NRR + +    +NR+++
Sbjct: 136 KERTRNLLREWYLQDPYPNPSKKRELAQATGLTPTQVGNWFKNRRQRDRAAAAKNRLQQ 194



>gi|8247936|sp|P50458|LHX2_HUMAN   LIM/homeobox protein Lhx2 (Homeobox protein LH-2)
          Length = 406

 Score = 33.9 bits (76), Expect = 0.11
 Identities = 16/69 (23%), Positives = 36/69 (52%), Gaps = 2/69 (2%)

Query: 341 TAKSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISRSVHLTDRQVKIWFQNRRMKL 400
           +++  ++ R  +  HQ   ++  F  N     +   ++++   LT R +++WFQN R K 
Sbjct: 262 SSQKTKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQVWFQNARAKF 321

Query: 401 KK--MNREN 407
           ++  + +EN
Sbjct: 322 RRNLLRQEN 330



>gi|20138668|sp|Q969G2|LHX4_HUMAN   LIM/homeobox protein Lhx4
          Length = 367

 Score = 33.9 bits (76), Expect = 0.11
 Identities = 18/61 (29%), Positives = 31/61 (50%)

Query: 346 RKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISRSVHLTDRQVKIWFQNRRMKLKKMNR 405
           ++ R   T  Q   L+  +  +    R  R ++S    L  R V++WFQNRR K K++ +
Sbjct: 135 KRPRTTITAKQLETLKNAYKNSPKPARHVREQLSSETGLDMRVVQVWFQNRRAKEKRLKK 194

Query: 406 E 406
           +
Sbjct: 195 D 195



>gi|2495295|sp|Q15583|TGIF_HUMAN   5'-TG-3' interacting factor (Homeobox protein TGIF)
          Length = 272

 Score = 33.5 bits (75), Expect = 0.14
 Identities = 17/64 (26%), Positives = 37/64 (57%), Gaps = 4/64 (6%)

Query: 341 TAKSGRKKRCPYTKHQTLELEKEFLF----NMYLTRERRLEISRSVHLTDRQVKIWFQNR 396
           +A SG+++R      +++++ +++L+    N Y + + +  +S+  HL+  QV  WF N 
Sbjct: 30  SAGSGKRRRRGNLPKESVQILRDWLYEHRYNAYPSEQEKALLSQQTHLSTLQVCNWFINA 89

Query: 397 RMKL 400
           R +L
Sbjct: 90  RRRL 93



>gi|6094293|sp|O95343|SIX3_HUMAN   Homeobox protein SIX3 (Sine oculis homeobox homolog 3)
          Length = 332

 Score = 33.5 bits (75), Expect = 0.14
 Identities = 18/58 (31%), Positives = 34/58 (58%), Gaps = 1/58 (1%)

Query: 354 KHQTLELEKE-FLFNMYLTRERRLEISRSVHLTDRQVKIWFQNRRMKLKKMNRENRIR 410
           K +T  L +E +L + Y    ++ E++++  LT  QV  WF+NRR + +    +NR++
Sbjct: 214 KERTRSLLREWYLQDPYPNPSKKRELAQATGLTPTQVGNWFKNRRQRDRAAAAKNRLQ 271



>gi|12643346|sp|Q9NQ69|LHX9_HUMAN   LIM/homeobox protein Lhx9
          Length = 388

 Score = 33.5 bits (75), Expect = 0.14
 Identities = 16/64 (25%), Positives = 33/64 (51%), Gaps = 2/64 (3%)

Query: 346 RKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISRSVHLTDRQVKIWFQNRRMKLKK--M 403
           ++ R  +  HQ   ++  F  N     +   ++++   LT R +++WFQN R K ++  +
Sbjct: 259 KRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQVWFQNARAKFRRNLL 318

Query: 404 NREN 407
            +EN
Sbjct: 319 RQEN 322



>gi|47117872|sp|P78412|IRX6_HUMAN   Iroquois-class homeodomain protein IRX-6 (Iroquois homeobox protein
           6) (Homeodomain protein IRXB3)
          Length = 445

 Score = 33.1 bits (74), Expect = 0.18
 Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 1/63 (1%)

Query: 344 SGRKKRCPYTKHQTLELE-KEFLFNMYLTRERRLEISRSVHLTDRQVKIWFQNRRMKLKK 402
           +GR+K        TL+    E   N Y T+  ++ ++    +T  QV  WF N R +LKK
Sbjct: 147 AGRRKNATRETTSTLKAWLNEHRKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKK 206

Query: 403 MNR 405
            N+
Sbjct: 207 ENK 209



>gi|2495290|sp|Q15475|SIX1_HUMAN   Homeobox protein SIX1 (Sine oculis homeobox homolog 1)
          Length = 284

 Score = 32.7 bits (73), Expect = 0.24
 Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 2/60 (3%)

Query: 360 LEKEFLFNMYLTRERRLEISRSVHLTDRQVKIWFQNRRMKLKKMNRENRIRELTANFNFS 419
           L + +  N Y +   + E++ +  LT  QV  WF+NRR + +    E + RE T N N S
Sbjct: 139 LREWYAHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDRA--AEAKERENTENNNSS 196



>gi|12230598|sp|Q9NPC8|SIX2_HUMAN   Homeobox protein SIX2 (Sine oculis homeobox homolog 2)
          Length = 291

 Score = 32.3 bits (72), Expect = 0.31
 Identities = 16/58 (27%), Positives = 28/58 (48%)

Query: 360 LEKEFLFNMYLTRERRLEISRSVHLTDRQVKIWFQNRRMKLKKMNRENRIRELTANFN 417
           L + +  N Y +   + E++ +  LT  QV  WF+NRR + +    + R     +N N
Sbjct: 139 LREWYAHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDRAAEAKERENNENSNSN 196



>gi|47117873|sp|P78414|IRX1_HUMAN   Iroquois-class homeodomain protein IRX-1 (Iroquois homeobox protein
           1) (Homeodomain protein IRXA1)
          Length = 480

 Score = 32.0 bits (71), Expect = 0.40
 Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 1/62 (1%)

Query: 345 GRKKRCPYTKHQTLELE-KEFLFNMYLTRERRLEISRSVHLTDRQVKIWFQNRRMKLKKM 403
           GR K        TL+    E   N Y T+  ++ ++    +T  QV  WF N R +LKK 
Sbjct: 129 GRPKNATRESTSTLKAWLNEHRKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKE 188

Query: 404 NR 405
           N+
Sbjct: 189 NK 190



>gi|28380240|sp|Q9C0A1|ZFHX2_HUMAN   Zinc finger homeobox protein 2
          Length = 1427

 Score = 32.0 bits (71), Expect = 0.40
 Identities = 18/57 (31%), Positives = 27/57 (47%)

Query: 346 RKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISRSVHLTDRQVKIWFQNRRMKLKK 402
           R  R  +T+ QT  L+  F  + Y        ++  + L  R V +WFQN R K +K
Sbjct: 451 RFSRTKFTEFQTQALQSFFETSAYPKDGEVERLASLLGLASRVVVVWFQNARQKARK 507



 Score = 29.3 bits (64), Expect = 2.6
 Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 5/45 (11%)

Query: 363 EFLFNMYL-----TRERRLEISRSVHLTDRQVKIWFQNRRMKLKK 402
           E L+  Y+     TR+    IS  V L  R V++WFQN R + +K
Sbjct: 725 EILYRWYMQDSNPTRKMLDCISEEVGLKKRVVQVWFQNTRARERK 769



>gi|12644347|sp|P78413|IRX4_HUMAN   Iroquois-class homeodomain protein IRX-4 (Iroquois homeobox protein
           4) (Homeodomain protein IRXA3)
          Length = 519

 Score = 31.6 bits (70), Expect = 0.53
 Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 4/68 (5%)

Query: 341 TAKSGRKKRCPYTKHQTLELE---KEFLFNMYLTRERRLEISRSVHLTDRQVKIWFQNRR 397
           T  SG +++   T+  T  L+   +E   N Y T+  ++ ++    +T  QV  WF N R
Sbjct: 139 TMDSGTRRKNA-TRETTSTLKAWLQEHRKNPYPTKGEKIMLAIITKMTLTQVSTWFANAR 197

Query: 398 MKLKKMNR 405
            +LKK N+
Sbjct: 198 RRLKKENK 205



>gi|28201884|sp|P78424|PO6F2_HUMAN   POU domain, class 6, transcription factor 2 (Retina-derived
           POU-domain factor-1) (RPF-1)
          Length = 684

 Score = 31.6 bits (70), Expect = 0.53
 Identities = 16/56 (28%), Positives = 27/56 (48%)

Query: 346 RKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISRSVHLTDRQVKIWFQNRRMKLK 401
           RK+R  +T      L   F  N + + +   EI+  ++     V++WF N+R  LK
Sbjct: 601 RKRRTSFTPQALEILNAHFEKNTHPSGQEMTEIAEKLNYDREVVRVWFCNKRQALK 656



>gi|22256962|sp|Q9BY11|PAC1_HUMAN   Protein kinase C and casein kinase substrate in neurons protein 1
          Length = 444

 Score = 31.2 bits (69), Expect = 0.69
 Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 1/60 (1%)

Query: 128 RKKRCPYTKYQIRELEREFFFSVYINKEKRLQLSRMLNLTDRQNIKEESSYCLYDSADKC 187
           RK + P+ K +++ELE          KE++L ++R +N    Q++  E    L D  DKC
Sbjct: 140 RKAQKPWAK-KMKELEAAKKAYHLACKEEKLAMTREMNSKTEQSVTPEQQKKLQDKVDKC 198



>gi|47117871|sp|P78411|IRX5_HUMAN   Iroquois-class homeodomain protein IRX-5 (Iroquois homeobox protein
           5) (Homeodomain protein IRXB2) (IRX-2A)
          Length = 482

 Score = 31.2 bits (69), Expect = 0.69
 Identities = 14/39 (35%), Positives = 22/39 (56%)

Query: 367 NMYLTRERRLEISRSVHLTDRQVKIWFQNRRMKLKKMNR 405
           N Y T+  ++ ++    +T  QV  WF N R +LKK N+
Sbjct: 138 NPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENK 176



>gi|47117874|sp|P78415|IRX3_HUMAN   Iroquois-class homeodomain protein IRX-3 (Iroquois homeobox protein
           3) (Homeodomain protein IRXB1)
          Length = 501

 Score = 31.2 bits (69), Expect = 0.69
 Identities = 14/39 (35%), Positives = 22/39 (56%)

Query: 367 NMYLTRERRLEISRSVHLTDRQVKIWFQNRRMKLKKMNR 405
           N Y T+  ++ ++    +T  QV  WF N R +LKK N+
Sbjct: 152 NPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENK 190



>gi|47117908|sp|Q9BZI1|IRX2_HUMAN   Iroquois-class homeodomain protein IRX-2 (Iroquois homeobox protein
           2) (Homeodomain protein IRXA2)
          Length = 471

 Score = 31.2 bits (69), Expect = 0.69
 Identities = 14/39 (35%), Positives = 22/39 (56%)

Query: 367 NMYLTRERRLEISRSVHLTDRQVKIWFQNRRMKLKKMNR 405
           N Y T+  ++ ++    +T  QV  WF N R +LKK N+
Sbjct: 139 NPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENK 177



>gi|28202258|sp|P20265|PO3F2_HUMAN   POU domain, class 3, transcription factor 2 (Nervous-system
           specific octamer-binding transcription factor N-Oct-3)
           (Brain-specific homeobox/POU domain protein 2) (Brain-2)
           (Brn-2 protein)
          Length = 443

 Score = 30.8 bits (68), Expect = 0.90
 Identities = 19/58 (32%), Positives = 27/58 (46%)

Query: 346 RKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISRSVHLTDRQVKIWFQNRRMKLKKM 403
           RKKR          LE  FL     + +    ++ S+ L    V++WF NRR K K+M
Sbjct: 355 RKKRTSIEVSVKGALESHFLKCPKPSAQEITSLADSLQLEKEVVRVWFCNRRQKEKRM 412



>gi|27805750|sp|Q9GZN2|TGIF2_HUMAN   Homeobox protein TGIF2 (TGFB-induced factor 2) (5'-TG-3'
           interacting factor 2) (TGF(beta)-induced transcription
           factor 2)
          Length = 237

 Score = 30.8 bits (68), Expect = 0.90
 Identities = 16/65 (24%), Positives = 37/65 (56%), Gaps = 4/65 (6%)

Query: 340 LTAKSGRKKRCPYTKHQTLELEKEFLF----NMYLTRERRLEISRSVHLTDRQVKIWFQN 395
           L + +G++KR      +++++ +++L+    N Y + + +L +S   +L+  Q+  WF N
Sbjct: 12  LLSLAGKRKRRGNLPKESVKILRDWLYLHRYNAYPSEQEKLSLSGQTNLSVLQICNWFIN 71

Query: 396 RRMKL 400
            R +L
Sbjct: 72  ARRRL 76



>gi|2495300|sp|Q12837|PO42_HUMAN   POU domain, class 4, transcription factor 2 (Brain-specific
           homeobox/POU domain protein 3B) (Brn-3B)
          Length = 410

 Score = 30.8 bits (68), Expect = 0.90
 Identities = 16/58 (27%), Positives = 27/58 (46%)

Query: 346 RKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISRSVHLTDRQVKIWFQNRRMKLKKM 403
           ++KR      +   LE  F      + E+   I+  + L    V++WF N+R K K+M
Sbjct: 347 KRKRTSIAAPEKRSLEAYFAIQPRPSSEKIAAIAEKLDLKKNVVRVWFCNQRQKQKRM 404



>gi|2495302|sp|Q15319|PO43_HUMAN   POU domain, class 4, transcription factor 3 (Brain-specific
           homeobox/POU domain protein 3C) (Brn-3C)
          Length = 338

 Score = 30.8 bits (68), Expect = 0.90
 Identities = 16/58 (27%), Positives = 27/58 (46%)

Query: 346 RKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISRSVHLTDRQVKIWFQNRRMKLKKM 403
           ++KR      +   LE  F      + E+   I+  + L    V++WF N+R K K+M
Sbjct: 275 KRKRTSIAAPEKRSLEAYFAIQPRPSSEKIAAIAEKLDLKKNVVRVWFCNQRQKQKRM 332



>gi|2506534|sp|P20264|PO33_HUMAN   POU domain, class 3, transcription factor 3 (Brain-specific
           homeobox/POU domain protein 1) (Brain-1) (Brn-1 protein)
          Length = 500

 Score = 30.8 bits (68), Expect = 0.90
 Identities = 19/58 (32%), Positives = 27/58 (46%)

Query: 346 RKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISRSVHLTDRQVKIWFQNRRMKLKKM 403
           RKKR          LE  FL     + +    ++ S+ L    V++WF NRR K K+M
Sbjct: 407 RKKRTSIEVSVKGALESHFLKCPKPSAQEITNLADSLQLEKEVVRVWFCNRRQKEKRM 464



>gi|2506535|sp|Q01851|PO4F1_HUMAN   POU domain, class 4, transcription factor 1 (Brain-specific
           homeobox/POU domain protein 3A) (Brn-3A) (Oct-T1)
           (Homeobox/POU domain protein RDC-1)
          Length = 423

 Score = 30.4 bits (67), Expect = 1.2
 Identities = 16/58 (27%), Positives = 27/58 (46%)

Query: 346 RKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISRSVHLTDRQVKIWFQNRRMKLKKM 403
           ++KR      +   LE  F      + E+   I+  + L    V++WF N+R K K+M
Sbjct: 360 KRKRTSIAAPEKRSLEAYFAVQPRPSSEKIAAIAEKLDLKKNVVRVWFCNQRQKQKRM 417



>gi|13124503|sp|O60315|SIP1_HUMAN   Zinc finger homeobox protein 1b (Smad interacting protein 1)
           (SMADIP1) (HRIHFB2411)
          Length = 1214

 Score = 29.6 bits (65), Expect = 2.0
 Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 1/48 (2%)

Query: 351 PYTKHQTLELEKEFLFNMYLTRERRLEISRSVHLTDRQVKIWFQNRRM 398
           PY  H ++ L+  +  NM    +  L+IS +V L    VK WF+ R++
Sbjct: 651 PYKDHMSV-LKAYYAMNMEPNSDELLKISIAVGLPQEFVKEWFEQRKV 697



>gi|1345629|sp|P49335|PO3F4_HUMAN   POU domain, class 3, transcription factor 4 (Brain-specific
           homeobox/POU domain protein 4) (Brain-4) (Brn-4)
          Length = 361

 Score = 29.3 bits (64), Expect = 2.6
 Identities = 19/58 (32%), Positives = 26/58 (44%)

Query: 346 RKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISRSVHLTDRQVKIWFQNRRMKLKKM 403
           RKKR          LE  FL       +    ++ S+ L    V++WF NRR K K+M
Sbjct: 279 RKKRTSIEVSVKGVLETHFLKCPKPAAQEISSLADSLQLEKEVVRVWFCNRRQKEKRM 336



>gi|1709437|sp|Q03052|PO3F1_HUMAN   POU domain, class 3, transcription factor 1 (Octamer-binding
           transcription factor 6) (Oct-6) (POU-domain
           transcription factor SCIP)
          Length = 448

 Score = 28.9 bits (63), Expect = 3.4
 Identities = 19/58 (32%), Positives = 26/58 (44%)

Query: 346 RKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISRSVHLTDRQVKIWFQNRRMKLKKM 403
           RKKR          LE  FL     +      ++ S+ L    V++WF NRR K K+M
Sbjct: 337 RKKRTSIEVGVKGALESHFLKCPKPSAHEITGLADSLQLEKEVVRVWFCNRRQKEKRM 394



>gi|8134548|sp|Q9UPM6|LHX61_HUMAN   LIM/homeobox protein Lhx6.1 (Lhx6)
          Length = 363

 Score = 28.9 bits (63), Expect = 3.4
 Identities = 14/60 (23%), Positives = 30/60 (50%)

Query: 343 KSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISRSVHLTDRQVKIWFQNRRMKLKK 402
           K  ++ R  +T  Q   ++ +F  +     +   +++    L+ R +++WFQN R + KK
Sbjct: 217 KPAKRARTSFTAEQLQVMQAQFAQDNNPDAQTLQKLADMTGLSRRVIQVWFQNCRARHKK 276



>gi|400659|sp|Q01860|PO5F1_HUMAN   POU domain, class 5, transcription factor 1 (Octamer-binding
           transcription factor 3) (Oct-3) (Oct-4)
          Length = 360

 Score = 28.5 bits (62), Expect = 4.5
 Identities = 19/66 (28%), Positives = 31/66 (46%)

Query: 346 RKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISRSVHLTDRQVKIWFQNRRMKLKKMNR 405
           ++KR          LE  FL     T ++   I++ + L    V++WF NRR K K+ + 
Sbjct: 231 KRKRTSIENRVRGNLENLFLQCPKPTLQQISHIAQQLGLEKDVVRVWFCNRRQKGKRSSS 290

Query: 406 ENRIRE 411
           +   RE
Sbjct: 291 DYAQRE 296



>gi|17368453|sp|Q13761|RUNX3_HUMAN   Runt-related transcription factor 3 (Core-binding factor, alpha 3
           subunit) (CBF-alpha 3) (Acute myeloid leukemia 2
           protein) (Oncogene AML-2) (Polyomavirus enhancer binding
           protein 2 alpha C subunit) (PEBP2-alpha C) (PEA2-alpha
           C) (SL3-3 enhancer factor 1 alpha C subunit) (SL3/AKV
           core-binding factor alpha C subunit)
          Length = 415

 Score = 28.1 bits (61), Expect = 5.8
 Identities = 9/18 (50%), Positives = 11/18 (61%)

Query: 281 SPPPPTLACGSGGGSQGD 298
           +PP P   CG GGG  G+
Sbjct: 14  TPPSPAFPCGGGGGKMGE 31



>gi|20978495|sp|Q96A47|ISL2_HUMAN   Insulin gene enhancer protein ISL-2 (Islet-2)
          Length = 359

 Score = 28.1 bits (61), Expect = 5.8
 Identities = 13/33 (39%), Positives = 23/33 (69%), Gaps = 3/33 (9%)

Query: 370 LTRERRLEISRSVHLTDRQVKIWFQNRRMKLKK 402
           L +E+ +E++    L+ R +++WFQN+R K KK
Sbjct: 219 LMKEQLVEMTG---LSPRVIRVWFQNKRCKDKK 248



>gi|47606423|sp|P61371|ISL1_HUMAN   Insulin gene enhancer protein ISL-1 (Islet-1)
 gi|47606425|sp|P61373|ISL1_MESAU   Insulin gene enhancer protein ISL-1 (Islet-1)
 gi|47606424|sp|P61372|ISL1_MOUSE   Insulin gene enhancer protein ISL-1 (Islet-1)
 gi|47606422|sp|P61374|ISL1_RAT   Insulin gene enhancer protein ISL-1 (Islet-1)
          Length = 349

 Score = 28.1 bits (61), Expect = 5.8
 Identities = 13/33 (39%), Positives = 23/33 (69%), Gaps = 3/33 (9%)

Query: 370 LTRERRLEISRSVHLTDRQVKIWFQNRRMKLKK 402
           L +E+ +E++    L+ R +++WFQN+R K KK
Sbjct: 209 LMKEQLVEMTG---LSPRVIRVWFQNKRCKDKK 238



>gi|13124090|sp|Q9UBF2|CPG2_HUMAN   Coatomer gamma-2 subunit (Gamma-2 coat protein) (Gamma-2 COP)
          Length = 871

 Score = 28.1 bits (61), Expect = 5.8
 Identities = 10/30 (33%), Positives = 19/30 (63%)

Query: 151 YINKEKRLQLSRMLNLTDRQNIKEESSYCL 180
           ++ K  RL +S+MLN   +  +K + +YC+
Sbjct: 202 HLRKNDRLAVSKMLNKFTKSGLKSQFAYCM 231



>gi|51316484|sp|Q8N5B7|LSS5_HUMAN   LAG1 longevity assurance homolog 5
          Length = 392

 Score = 28.1 bits (61), Expect = 5.8
 Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 1/48 (2%)

Query: 351 PYTKHQTLELEKEFLFNMYLTRERRLE-ISRSVHLTDRQVKIWFQNRR 397
           PY       LEK F+       ++RLE +S+ +    R+++ WF++RR
Sbjct: 83  PYQAQPNAILEKVFISITKYPDKKRLEGLSKQLDWNVRKIQCWFRHRR 130



>gi|50401058|sp|Q8IU89|LSS3_HUMAN   LAG1 longevity assurance homolog 3
          Length = 383

 Score = 28.1 bits (61), Expect = 5.8
 Identities = 13/41 (31%), Positives = 27/41 (65%), Gaps = 1/41 (2%)

Query: 378 ISRSVHLTDRQVKIWFQNRRMKLKKMNRENRIRELTANFNF 418
           +++  +LT+RQV+ WF++RR + ++ +R  + +E    F F
Sbjct: 102 LAKKCNLTERQVERWFRSRRNQ-ERPSRLKKFQEACWRFAF 141



>gi|128370|sp|P26718|NKGD_HUMAN   NKG2-D type II integral membrane protein (NKG2-D activating NK
           receptor) (NK cell receptor D) (Killer cell lectin-like
           receptor subfamily K member 1)
          Length = 216

 Score = 27.7 bits (60), Expect = 7.6
 Identities = 12/27 (44%), Positives = 16/27 (59%)

Query: 126 RTRKKRCPYTKYQIRELEREFFFSVYI 152
           R +K+RCP  K + RE    FFF  +I
Sbjct: 33  RWQKQRCPVVKSKCRENASPFFFCCFI 59



>gi|50400700|sp|Q9Y3X0|CCD9_HUMAN   Coiled-coil domain containing protein 9
          Length = 531

 Score = 27.7 bits (60), Expect = 7.6
 Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 1/33 (3%)

Query: 384 LTDRQVKIWFQNRRMKLKKMNRE-NRIRELTAN 415
           ++DR+ K W + RR  ++KMN E  +I E   N
Sbjct: 148 ISDRKSKEWEERRRQNIEKMNEEMEKIAEYERN 180



>gi|3023207|sp|P78314|3BP2_HUMAN   SH3 domain-binding protein 2 (3BP-2)
          Length = 561

 Score = 27.7 bits (60), Expect = 7.6
 Identities = 11/42 (26%), Positives = 23/42 (54%)

Query: 149 SVYINKEKRLQLSRMLNLTDRQNIKEESSYCLYDSADKCPKV 190
           SV++N  +  ++ R+   T  +   ++  YC+ +S+ K  KV
Sbjct: 456 SVFVNTTESCEVERLFKATSPRGEPQDGLYCIRNSSTKSGKV 497



>gi|27923959|sp|Q03001|BPA1_HUMAN   Bullous pemphigoid antigen 1 isoforms 1/2/3/4/5/8 (230 kDa bullous
            pemphigoid antigen) (BPA) (Hemidesmosomal plaque protein)
            (Dystonia musculorum protein) (Dystonin)
          Length = 3214

 Score = 27.3 bits (59), Expect = 10.0
 Identities = 15/56 (26%), Positives = 29/56 (51%), Gaps = 1/56 (1%)

Query: 139  IRELEREFFFSVYINKEKRLQLSRMLNLTDRQNIKEESSYCLYDSADKCPKVSATA 194
            I+++E++  F   +  EK+L+  + + L  R+ I E    C  ++   CP   AT+
Sbjct: 1856 IKQMEKDLAFQKQV-AEKQLKEKQKIELEARRKITEIQYTCRENALPVCPITQATS 1910






  Database: Non-redundant SwissProt sequences
    Posted date:  Mar 15, 2005 10:11 AM
  Number of letters in database: 60,490,055
  Number of sequences in database:  164,271
  
Lambda     K      H
   0.316    0.131    0.394 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 935,699
Number of Sequences: 164271
Number of extensions: 40722
Number of successful extensions: 215
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 171
Number of HSP's gapped (non-prelim): 46
length of query: 419
length of database: 6,424,444
effective HSP length: 98
effective length of query: 321
effective length of database: 5,257,754
effective search space: 1687739034
effective search space used: 1687739034
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (27.3 bits)