BLASTP 2.2.10 [Oct-19-2004]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

RID: 1111168476-9007-106562700343.BLASTQ2

Query= FGENESH (12), GENSCAN (9), GENEid (13):2 exon (s) 245702
 - 247556   272 aa, chain -
         (272 letters)


Database: Non-redundant SwissProt sequences 
           164,271 sequences; 60,490,055 total letters

 
If you have any problems or questions with the results of this search 
please refer to the BLAST FAQs

Taxonomy reports

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|6166219|sp|P31269|HXA9_HUMAN  Homeobox protein Hox-A9 (Ho...   481   e-137 
gi|20141537|sp|P31274|HXC9_HUMAN  Homeobox protein Hox-C9 (H...   222   1e-58 
gi|20141507|sp|P17482|HXB9_HUMAN  Homeobox protein Hox-B9 (H...   197   3e-51 
gi|123286|sp|P28356|HXD9_HUMAN  Homeobox protein Hox-D9 (Hox...   192   1e-49 
gi|20141612|sp|Q9NYD6|HXC10_HUMAN  Homeobox protein Hox-C10       133   7e-32 
gi|13124743|sp|P31260|HXA10_HUMAN  Homeobox protein Hox-A10 ...   128   2e-30 
gi|123289|sp|P28358|HXD10_HUMAN  Homeobox protein Hox-D10 (H...   127   3e-30 
gi|13124744|sp|P31270|HXA11_HUMAN  Homeobox protein Hox-A11 ...   103   6e-23 
gi|12644203|sp|P31277|HXD11_HUMAN  Homeobox protein Hox-D11 ...   103   8e-23 
gi|3287858|sp|O43248|HXC11_HUMAN  Homeobox protein Hox-C11        101   3e-22 
gi|232262|sp|Q00444|HXC5_HUMAN  Homeobox protein Hox-C5 (Hox...    93   8e-20 
gi|17378385|sp|P31267|HXA6_HUMAN  Homeobox protein Hox-A6 (H...    93   1e-19 
gi|13124745|sp|P31273|HXC8_HUMAN  Homeobox protein Hox-C8 (H...    92   2e-19 
gi|6016293|sp|O43365|HXA3_HUMAN  Homeobox protein Hox-A3 (Ho...    92   2e-19 
gi|20141506|sp|P17481|HXB8_HUMAN  Homeobox protein Hox-B8 (H...    89   2e-18 
gi|123255|sp|P09629|HXB7_HUMAN  Homeobox protein Hox-B7 (Hox...    88   3e-18 
gi|3915721|sp|P31268|HXA7_HUMAN  Homeobox protein Hox-A7 (Ho...    87   5e-18 
gi|13124738|sp|P17509|HXB6_HUMAN  Homeobox protein Hox-B6 (H...    87   8e-18 
gi|13124737|sp|P13378|HXD8_HUMAN  Homeobox protein Hox-D8 (H...    86   1e-17 
gi|52788238|sp|P20719|HXA5_HUMAN  Homeobox protein Hox-A5 (H...    86   1e-17 
gi|400000|sp|P09067|HXB5_HUMAN  Homeobox protein Hox-B5 (Hox...    86   1e-17 
gi|123268|sp|P14651|HXB3_HUMAN  Homeobox protein Hox-B3 (Hox...    84   5e-17 
gi|123270|sp|P14652|HXB2_HUMAN  Homeobox protein Hox-B2 (Hox...    84   5e-17 
gi|6166222|sp|P31249|HXD3_HUMAN  Homeobox protein Hox-D3 (Ho...    83   9e-17 
gi|1709079|sp|P50222|MEOX2_HUMAN  Homeobox protein MOX-2 (Me...    83   9e-17 
gi|1345720|sp|P47902|CDX1_HUMAN  Homeobox protein CDX-1 (Cau...    82   1e-16 
gi|6166217|sp|Q00056|HXA4_HUMAN  Homeobox protein Hox-A4 (Ho...    82   1e-16 
gi|1708540|sp|P52945|IPF1_HUMAN  Insulin promoter factor-1 (...    82   2e-16 
gi|12644227|sp|P35452|HXD12_HUMAN  Homeobox protein Hox-D12 ...    82   2e-16 
gi|20141493|sp|P09630|HXC6_HUMAN  Homeobox protein Hox-C6 (H...    82   2e-16 
gi|20141491|sp|P09016|HXD4_HUMAN  Homeobox protein Hox-D4 (H...    82   2e-16 
gi|20141538|sp|P31275|HXC12_HUMAN  Homeobox protein Hox-C12 ...    82   2e-16 
gi|547692|sp|P17483|HXB4_HUMAN  Homeobox protein Hox-B4 (Hox...    80   6e-16 
gi|6016292|sp|O43364|HXA2_HUMAN  Homeobox protein Hox-A2           80   6e-16 
gi|123279|sp|P09017|HXC4_HUMAN  Homeobox protein Hox-C4 (Hox...    79   1e-15 
gi|1709078|sp|P50221|MEOX1_HUMAN  Homeobox protein MOX-1 (Me...    78   4e-15 
gi|20141282|sp|Q99626|CDX2_HUMAN  Homeobox protein CDX-2 (Ca...    77   5e-15 
gi|27923786|sp|Q9H4S2|GSHI_HUMAN  Homeobox protein GSH-1           76   1e-14 
gi|3023467|sp|O14627|CDX4_HUMAN  Homeobox protein CDX-4 (Cau...    75   2e-14 
gi|2828197|sp|P31271|HXA13_HUMAN  Homeobox protein Hox-A13 (...    75   3e-14 
gi|123271|sp|P14653|HXB1_HUMAN  Homeobox protein Hox-B1 (Hox...    74   5e-14 
gi|20138327|sp|Q9BZM3|GSH2_HUMAN  Homeobox protein GSH-2           74   5e-14 
gi|6166216|sp|P49639|HXA1_HUMAN  Homeobox protein Hox-A1 (Ho...    73   9e-14 
gi|20141539|sp|P31276|HXC13_HUMAN  Homeobox protein Hox-C13 ...    73   1e-13 
gi|2851475|sp|P35453|HXD13_HUMAN  Homeobox protein Hox-D13 (...    73   1e-13 
gi|45644931|sp|P50219|HLXB9_HUMAN  Homeobox protein HB9            72   2e-13 
gi|50403792|sp|Q92826|HXB13_HUMAN  Homeobox protein Hox-B13        72   3e-13 
gi|17378648|sp|Q9GZZ0|HXD1_HUMAN  Homeobox protein Hox-D1          70   6e-13 
gi|6016205|sp|O95096|NKX22_HUMAN  Homeobox protein Nkx-2.2 (...    70   8e-13 
gi|13959687|sp|P35548|MSX2_HUMAN  Homeobox protein MSX-2 (Ho...    67   6e-12 
gi|6016208|sp|O15522|NK28_HUMAN  Homeobox protein Nkx-2.8 (H...    66   1e-11 
gi|23503066|sp|P28360|MSX1_HUMAN  Homeobox protein MSX-1 (Ho...    65   2e-11 
gi|1352398|sp|P49640|EVX1_HUMAN  Homeobox even-skipped homol...    65   3e-11 
gi|12644308|sp|P52951|GBX2_HUMAN  Homeobox protein GBX-2 (Ga...    64   4e-11 
gi|12230077|sp|Q14549|GBX1_HUMAN  Homeobox protein GBX-1 (Ga...    64   5e-11 
gi|29336920|sp|Q9BZE3|BARH1_HUMAN  BarH-like 1 homeobox prot...    63   1e-10 
gi|12231013|sp|Q03828|EVX2_HUMAN  Homeobox even-skipped homo...    62   2e-10 
gi|1730095|sp|P52954|LBX1_HUMAN  Transcription factor LBX1         62   3e-10 
gi|27923815|sp|Q8TAU0|NKX23_HUMAN  Homeobox protein Nkx-2.3 ...    61   3e-10 
gi|27923817|sp|Q9H2Z4|NK24_HUMAN  Homeobox protein Nkx-2.4 (...    61   5e-10 
gi|1174819|sp|P43699|TITF1_HUMAN  Thyroid transcription fact...    60   6e-10 
gi|47117915|sp|Q9NY43|BARH2_HUMAN  BarH-like 2 homeobox protein    60   8e-10 
gi|1708211|sp|P52952|NK25_HUMAN  Homeobox protein Nkx-2.5 (H...    59   1e-09 
gi|547658|sp|Q03014|HHEX_HUMAN  Homeobox protein PRH (Hemato...    59   2e-09 
gi|21903415|sp|P19622|HME2_HUMAN  Homeobox protein engrailed...    59   2e-09 
gi|3913487|sp|O60479|DLX3_HUMAN  Homeobox protein DLX-3            58   3e-09 
gi|13431329|sp|Q9UMQ3|BARX2_HUMAN  Homeobox protein BarH-like 2    58   3e-09 
gi|17377578|sp|Q99801|NKX31_HUMAN  Homeobox protein Nkx-3.1        58   3e-09 
gi|12644329|sp|P56178|DLX5_HUMAN  Homeobox protein DLX-5           58   3e-09 
gi|2506529|sp|Q07687|DLX2_HUMAN  Homeobox protein DLX-2            58   4e-09 
gi|27923733|sp|Q96QS3|ARX_HUMAN  Homeobox protein ARX (Arist...    58   4e-09 
gi|20532295|sp|Q9UIW0|VAX2_HUMAN  Ventral anterior homeobox 2      57   5e-09 
gi|14917010|sp|Q05925|HME1_HUMAN  Homeobox protein engrailed...    57   5e-09 
gi|14194481|sp|Q9HBU1|BARX1_HUMAN  Homeobox protein BarH-like 1    56   1e-08 
gi|3024482|sp|P78337|PITX1_HUMAN  Pituitary homeobox 1 (Hind...    56   1e-08 
gi|20532396|sp|O43763|TLX2_HUMAN  T-cell leukemia homeobox p...    55   2e-08 
gi|6016210|sp|P78367|NK32_HUMAN  Homeobox protein Nkx-3.2 (B...    55   3e-08 
gi|19862512|sp|Q04743|EMX2_HUMAN  Homeobox protein EMX2 (Emp...    55   3e-08 
gi|3915680|sp|Q92988|DLX4_HUMAN  Homeobox protein DLX-4 (DLX...    55   3e-08 
gi|6093723|sp|O75364|PITX3_HUMAN  Pituitary homeobox 3 (Home...    54   6e-08 
gi|2833256|sp|Q14774|HLX1_HUMAN  Homeobox protein HLX1 (Home...    54   7e-08 
gi|399982|sp|P31314|TLX1_HUMAN  T-cell leukemia homeobox pro...    53   9e-08 
gi|38605720|sp|P56177|DLX1_HUMAN  Homeobox protein DLX-1           53   9e-08 
gi|57015304|sp|Q04741|EMX1_HUMAN  Homeobox protein EMX1 (Emp...    53   1e-07 
gi|12644330|sp|P56179|DLX6_HUMAN  Homeobox protein DLX-6           52   2e-07 
gi|6174907|sp|Q99697|PITX2_HUMAN  Pituitary homeobox 2 (RIEG...    52   2e-07 
gi|12644475|sp|Q99811|PRRX2_HUMAN  Paired mesoderm homeobox ...    52   2e-07 
gi|12230168|sp|Q9UBX0|HESX1_HUMAN  Homeobox expressed in ES ...    52   2e-07 
gi|25009572|sp|Q9NZR4|VSX1_HUMAN  Visual system homeobox 1 (...    51   4e-07 
gi|6174916|sp|P54821|PRRX1_HUMAN  Paired mesoderm homeobox p...    51   5e-07 
gi|23831508|sp|O43711|TLX3_HUMAN  T-cell leukemia homeobox p...    50   8e-07 
gi|28202257|sp|P14859|PO2F1_HUMAN  POU domain, class 2, tran...    50   1e-06 
gi|48428084|sp|Q8N693|ESX1L_HUMAN  Extraembryonic, spermatog...    49   2e-06 
gi|8134640|sp|O14813|PHX2A_HUMAN  Paired mesoderm homeobox p...    49   2e-06 
gi|13626112|sp|Q9H161|ALX4_HUMAN  Homeobox protein aristales...    49   2e-06 
gi|3287764|sp|O43186|CRX_HUMAN  Cone-rod homeobox protein          48   4e-06 
gi|7531125|sp|P56915|GSC_HUMAN  Homeobox protein goosecoid         48   4e-06 
gi|8134644|sp|Q99453|PHX2B_HUMAN  Paired mesoderm homeobox p...    48   4e-06 
gi|6016211|sp|P78426|NK61_HUMAN  Homeobox protein Nkx-6.1          47   7e-06 
gi|17374365|sp|P58304|CHX10_HUMAN  Homeobox protein CHX10 (C...    47   9e-06 
gi|8247951|sp|P23759|PAX7_HUMAN  Paired box protein Pax-7 (H...    46   1e-05 
gi|1172022|sp|P23760|PAX3_HUMAN  Paired box protein Pax-3 (H...    46   1e-05 
gi|17380297|sp|Q9Y2V3|RX_HUMAN  Retinal homeobox protein Rx ...    46   2e-05 
gi|37537960|sp|Q8NHV9|PEPP1_HUMAN  Paired-like homeobox prot...    45   2e-05 
gi|13626107|sp|O95076|ALX3_HUMAN  Homeobox protein aristales...    45   2e-05 
gi|123402|sp|P09086|PO2F2_HUMAN  POU domain, class 2, transc...    45   3e-05 
gi|3914276|sp|O43316|PAX4_HUMAN  Paired box protein Pax-4          45   3e-05 
gi|6831676|sp|O15266|SHOX_HUMAN  Short stature homeobox prot...    44   4e-05 
gi|417425|sp|P32242|OTX1_HUMAN  Homeobox protein OTX1              44   4e-05 
gi|6093787|sp|O75360|PROP1_HUMAN  Homeobox protein prophet o...    44   4e-05 
gi|18202099|sp|O60902|SHOX2_HUMAN  Short stature homeobox pr...    44   4e-05 
gi|51702790|sp|P63015|PAX6_MOUSE  Paired box protein Pax-6 (...    44   6e-05 
gi|18202510|sp|Q15911|ATBF1_HUMAN  Alpha-fetoprotein enhance...    44   6e-05 
gi|37537987|sp|Q9BQY4|PEP2_HUMAN  Paired-like homeobox prote...    43   1e-04 
gi|3023579|sp|Q15699|CRT1_HUMAN  Cartilage homeoprotein 1 (C...    43   1e-04 
gi|417427|sp|P32243|OTX2_HUMAN  Homeobox protein OTX2              43   1e-04 
gi|6685480|sp|O15499|GSCL_HUMAN  Homeobox protein goosecoid-...    42   2e-04 
gi|28201861|sp|Q9UKI9|PO2F3_HUMAN  POU domain, class 2, tran...    42   2e-04 
gi|28380240|sp|Q9C0A1|ZFHX2_HUMAN  Zinc finger homeobox prot...    42   2e-04 
gi|8247936|sp|P50458|LHX2_HUMAN  LIM/homeobox protein Lhx2 (...    39   0.001 
gi|8247930|sp|O60663|LMX1B_HUMAN  LIM homeobox transcription...    39   0.002 
gi|18202938|sp|Q9H2C1|LHX5_HUMAN  LIM/homeobox protein Lhx5        38   0.004 
gi|730281|sp|P40426|PBX3_HUMAN  Pre-B-cell leukemia transcri...    38   0.004 
gi|1352729|sp|P40425|PBX2_HUMAN  Pre-B-cell leukemia transcr...    38   0.004 
gi|37999770|sp|Q9BYU1|PBX4_HUMAN  Pre-B-cell leukemia transc...    38   0.004 
gi|20141754|sp|P41778|PBX1_MOUSE  Pre-B-cell leukemia transc...    37   0.007 
gi|60416412|sp|P48742|LHX1_HUMAN  LIM/homeobox protein Lhx1 ...    36   0.012 
gi|2495306|sp|Q14863|PO6F1_HUMAN  POU domain, class 6, trans...    36   0.012 
gi|12643346|sp|Q9NQ69|LHX9_HUMAN  LIM/homeobox protein Lhx9        36   0.012 
gi|12643415|sp|Q9UBR4|LHX3_HUMAN  LIM/homeobox protein Lhx3        36   0.016 
gi|20138668|sp|Q969G2|LHX4_HUMAN  LIM/homeobox protein Lhx4        35   0.020 
gi|12644347|sp|P78413|IRX4_HUMAN  Iroquois-class homeodomain...    35   0.035 
gi|27923801|sp|Q8TE12|LMX1A_HUMAN  LIM homeobox transcriptio...    34   0.046 
gi|47117873|sp|P78414|IRX1_HUMAN  Iroquois-class homeodomain...    34   0.060 
gi|47117871|sp|P78411|IRX5_HUMAN  Iroquois-class homeodomain...    34   0.060 
gi|28201884|sp|P78424|PO6F2_HUMAN  POU domain, class 6, tran...    34   0.060 
gi|400659|sp|Q01860|PO5F1_HUMAN  POU domain, class 5, transc...    33   0.078 
gi|47117872|sp|P78412|IRX6_HUMAN  Iroquois-class homeodomain...    33   0.10  
gi|47117874|sp|P78415|IRX3_HUMAN  Iroquois-class homeodomain...    33   0.10  
gi|47117908|sp|Q9BZI1|IRX2_HUMAN  Iroquois-class homeodomain...    33   0.10  
gi|26006839|sp|Q96KN3|PNX2_HUMAN  Homeobox protein PKNOX2 (P...    33   0.13  
gi|12644326|sp|P55347|PNX1_HUMAN  Homeobox protein PKNOX1 (P...    33   0.13  
gi|2495302|sp|Q15319|PO43_HUMAN  POU domain, class 4, transc...    33   0.13  
gi|2506535|sp|Q01851|PO4F1_HUMAN  POU domain, class 4, trans...    32   0.17  
gi|20978495|sp|Q96A47|ISL2_HUMAN  Insulin gene enhancer prot...    32   0.23  
gi|50401058|sp|Q8IU89|LSS3_HUMAN  LAG1 longevity assurance h...    32   0.30  
gi|8134548|sp|Q9UPM6|LHX61_HUMAN  LIM/homeobox protein Lhx6....    32   0.30  
gi|28201858|sp|Q06416|PO5L_HUMAN  POU domain, class 5, trans...    31   0.39  
gi|2495300|sp|Q12837|PO42_HUMAN  POU domain, class 4, transc...    31   0.39  
gi|28201859|sp|Q9BZV7|PO5M_HUMAN  POU domain, class 5, trans...    31   0.39  
gi|6094293|sp|O95343|SIX3_HUMAN  Homeobox protein SIX3 (Sine...    31   0.50  
gi|12230578|sp|O95475|SIX6_HUMAN  Homeobox protein SIX6 (Sin...    31   0.50  
gi|46396941|sp|Q8N196|SIX5_HUMAN  Homeobox protein SIX5 (DM ...    31   0.50  
gi|12230598|sp|Q9NPC8|SIX2_HUMAN  Homeobox protein SIX2 (Sin...    30   0.66  
gi|51701426|sp|Q8IZF6|GP112_HUMAN  Probable G-protein couple...    30   0.66  
gi|12230612|sp|Q9UIU6|SIX4_HUMAN  Homeobox protein SIX4 (Sin...    30   0.66  
gi|20140022|sp|Q14162|SREC_HUMAN  Endothelial cells scavenge...    30   0.66  
gi|47606423|sp|P61371|ISL1_HUMAN  Insulin gene enhancer prot...    30   0.86  
gi|2495290|sp|Q15475|SIX1_HUMAN  Homeobox protein SIX1 (Sine...    30   1.1   
gi|123408|sp|P28069|PIT1_HUMAN  Pituitary-specific positive ...    30   1.1   
gi|56405299|sp|O00268|TAF4_HUMAN  Transcription initiation f...    29   1.5   
gi|1175423|sp|P46937|YAP1_HUMAN  65 kDa Yes-associated prote...    29   1.5   
gi|22095989|sp|Q9NPG4|PC12_HUMAN  Protocadherin 12 precursor...    29   1.5   
gi|127619|sp|P01106|MYC_HUMAN  Myc proto-oncogene protein (c...    29   1.5   
gi|50401602|sp|Q8N8G2|VGLL2_HUMAN  Transcription cofactor ve...    29   1.5   
gi|6686275|sp|Q99798|ACON_HUMAN  Aconitate hydratase, mitoch...    29   1.5   
gi|28202258|sp|P20265|PO3F2_HUMAN  POU domain, class 3, tran...    29   1.9   
gi|2506534|sp|P20264|PO33_HUMAN  POU domain, class 3, transc...    29   1.9   
gi|41017418|sp|Q9UK53|ING1_HUMAN  Inhibitor of growth protein 1    28   2.5   
gi|6685621|sp|Q9Y6R4|M3K4_HUMAN  Mitogen-activated protein k...    28   3.3   
gi|2833265|sp|Q15695|U2R1_HUMAN  U2 small nuclear ribonucleo...    28   4.3   
gi|1345629|sp|P49335|PO3F4_HUMAN  POU domain, class 3, trans...    28   4.3   
gi|2500875|sp|Q06413|MEF2C_HUMAN  Myocyte-specific enhancer ...    28   4.3   
gi|2498434|sp|Q00341|VIGLN_HUMAN  Vigilin (High density lipo...    28   4.3   
gi|44889075|sp|Q9H4I2|ZHX3_HUMAN  Zinc fingers and homeoboxe...    27   5.6   
gi|13124503|sp|O60315|SIP1_HUMAN  Zinc finger homeobox prote...    27   5.6   
gi|1706179|sp|P49711|CTCF_HUMAN  Transcriptional repressor C...    27   5.6   
gi|1709437|sp|Q03052|PO3F1_HUMAN  POU domain, class 3, trans...    27   5.6   
gi|51316484|sp|Q8N5B7|LSS5_HUMAN  LAG1 longevity assurance h...    27   5.6   
gi|56404975|sp|Q9P202|WHRN_HUMAN  Whirlin (Autosomal recessi...    27   5.6   
gi|47606716|sp|O60524|SDCG1_HUMAN  Serologically defined col...    27   5.6   
gi|48474644|sp|Q9H4M7|PLA4_HUMAN  Pleckstrin homology domain...    27   7.3   
gi|2498904|sp|Q14242|SELPL_HUMAN  P-selectin glycoprotein li...    27   7.3   
gi|6226862|sp|Q99504|EYA3_HUMAN  Eyes absent homolog 3             27   7.3   
gi|32129730|sp|Q9BV36|MLPH_HUMAN  Melanophilin (Exophilin 3)...    27   9.5   
gi|33860160|sp|O43593|HAIR_HUMAN  Hairless protein                 27   9.5   
gi|27924006|sp|Q9Y493|ZAN_HUMAN  Zonadhesin precursor              27   9.5   
gi|51701684|sp|Q8TCU5|NM3A_HUMAN  Glutamate [NMDA] receptor ...    27   9.5   


Alignments

>gi|6166219|sp|P31269|HXA9_HUMAN   Homeobox protein Hox-A9 (Hox-1G)
          Length = 272

 Score =  481 bits (1239), Expect = e-137
 Identities = 236/272 (86%), Positives = 236/272 (86%)

Query: 1   MATTGALGNYYVDSFLLGADAADELSVGRYAPGTLGQPPRQAATLAEHPDFSPCSFQSKA 60
           MATTGALGNYYVDSFLLGADAADELSVGRYAPGTLGQPPRQAATLAEHPDFSPCSFQSKA
Sbjct: 1   MATTGALGNYYVDSFLLGADAADELSVGRYAPGTLGQPPRQAATLAEHPDFSPCSFQSKA 60

Query: 61  TVFGASWXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDGRYMRSWLEPTPGALS 120
           TVFGASW                                    DGRYMRSWLEPTPGALS
Sbjct: 61  TVFGASWNPVHAAGANAVPAAVYHHHHHHPYVHPQAPVAAAAPDGRYMRSWLEPTPGALS 120

Query: 121 FAGLPSSRPYGIKPEPLSARRGDCPTLDTHTLSLTDYACGSPPVDREKQPSEGAFSENNA 180
           FAGLPSSRPYGIKPEPLSARRGDCPTLDTHTLSLTDYACGSPPVDREKQPSEGAFSENNA
Sbjct: 121 FAGLPSSRPYGIKPEPLSARRGDCPTLDTHTLSLTDYACGSPPVDREKQPSEGAFSENNA 180

Query: 181 ENESGGDKPPIDPNNPAANWLHARSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVA 240
           ENESGGDKPPIDPNNPAANWLHARSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVA
Sbjct: 181 ENESGGDKPPIDPNNPAANWLHARSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVA 240

Query: 241 RLLNLTERQVKIWFQNRRMKMKKINKDRAKDE 272
           RLLNLTERQVKIWFQNRRMKMKKINKDRAKDE
Sbjct: 241 RLLNLTERQVKIWFQNRRMKMKKINKDRAKDE 272



>gi|20141537|sp|P31274|HXC9_HUMAN   Homeobox protein Hox-C9 (Hox-3B)
          Length = 260

 Score =  222 bits (565), Expect = 1e-58
 Identities = 129/275 (46%), Positives = 156/275 (56%), Gaps = 20/275 (7%)

Query: 1   MATTGALGNYYVDSFLLGADAADELSVGRYAPGTLGQPPRQAATLAEHPDFSPCSFQSKA 60
           M+ TG + NYYVDS L+  D  D L+    A G      R +  + +  DF  CSF  K 
Sbjct: 1   MSATGPISNYYVDS-LISHDNEDLLASRFPATGAHPAAARPSGLVPDCSDFPSCSFAPKP 59

Query: 61  TVFGASWXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDGRYMRSWLEPTPGALS 120
            VF  SW                                    D RYMR+WLEP  GA+S
Sbjct: 60  AVFSTSWAPVPSQSSVVYHPYGPQPHLGA--------------DTRYMRTWLEPLSGAVS 105

Query: 121 FAGLPSS-RPYGIKPEPLSARRGDCPTLDTHTLSLTDYACGSPPVDREKQPSEGAFSENN 179
           F   P+  R Y +KP+    RR DC   +    S  DY  GSP   R++ P      E +
Sbjct: 106 FPSFPAGGRHYALKPDAYPGRRADCGPGEGR--SYPDYMYGSPGELRDRAPQTLPSPEAD 163

Query: 180 A--ENESGGDKPPIDPNNPAANWLHARSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRY 237
           A   ++   +K  +DP+NP ANW+HARSTRKKRCPYTK+QTLELEKEFLFNMYLTRDRRY
Sbjct: 164 ALAGSKHKEEKADLDPSNPVANWIHARSTRKKRCPYTKYQTLELEKEFLFNMYLTRDRRY 223

Query: 238 EVARLLNLTERQVKIWFQNRRMKMKKINKDRAKDE 272
           EVAR+LNLTERQVKIWFQNRRMKMKK+NK++   E
Sbjct: 224 EVARVLNLTERQVKIWFQNRRMKMKKMNKEKTDKE 258



>gi|20141507|sp|P17482|HXB9_HUMAN   Homeobox protein Hox-B9 (Hox-2E) (Hox-2.5)
          Length = 250

 Score =  197 bits (501), Expect = 3e-51
 Identities = 118/271 (43%), Positives = 149/271 (54%), Gaps = 21/271 (7%)

Query: 1   MATTGALGNYYVDSFLLGADAADELSVGRYAPGTLGQPPRQAATLAEHPDFSPCSFQSKA 60
           M+ +G L +YYVDS +  +  +++    ++  G      +     AEH +F  CSFQ KA
Sbjct: 1   MSISGTLSSYYVDSII--SHESEDAPPAKFPSGQYASSRQPGH--AEHLEFPSCSFQPKA 56

Query: 61  TVFGASWXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDGRYMRSWLEPTPGALS 120
            VFGASW                                    + RY+R+WLEP P    
Sbjct: 57  PVFGASWAPLSPHASGSLPSVYHPYIQPQGVPPA---------ESRYLRTWLEPAPRG-- 105

Query: 121 FAGLPSSRPYGIKPEPLSARRGDCPTLDTHTLSLTDYACGSPPVDREKQPSEGAFSENNA 180
               P      +K EPL    G+     T   SL + + G   V   ++P  G    +N 
Sbjct: 106 -EAAPGQGQAAVKAEPLLGAPGELLKQGTPEYSL-ETSAGREAVLSNQRPGYG----DNK 159

Query: 181 ENESGGDKPPIDPNNPAANWLHARSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVA 240
             E   DK   D  NP+ANWLHARS+RKKRCPYTK+QTLELEKEFLFNMYLTRDRR+EVA
Sbjct: 160 ICEGSEDKERPDQTNPSANWLHARSSRKKRCPYTKYQTLELEKEFLFNMYLTRDRRHEVA 219

Query: 241 RLLNLTERQVKIWFQNRRMKMKKINKDRAKD 271
           RLLNL+ERQVKIWFQNRRMKMKK+NK++ K+
Sbjct: 220 RLLNLSERQVKIWFQNRRMKMKKMNKEQGKE 250



>gi|123286|sp|P28356|HXD9_HUMAN   Homeobox protein Hox-D9 (Hox-4C) (Hox-5.2)
          Length = 342

 Score =  192 bits (488), Expect = 1e-49
 Identities = 138/349 (39%), Positives = 164/349 (46%), Gaps = 93/349 (26%)

Query: 1   MATTGALGNYYVDSFLLGADAADELSVGRYAP---GTLGQPPR----QAATLAEHPDFSP 53
           M+++G L NYYVDS L+G +  DE+   R+ P   G  G+P       AAT AE   F+ 
Sbjct: 1   MSSSGTLSNYYVDS-LIGHEG-DEVFAARFGPPGPGAQGRPAGVADGPAATAAE---FAS 55

Query: 54  CSFQSKATVFGASWXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDGRYMRSWLE 113
           CSF  ++ VF ASW                                     GRY+RSW+E
Sbjct: 56  CSFAPRSAVFSASWSAVPSQPPAAAAMSGLYHPYVPPPPLAASASE----PGRYVRSWME 111

Query: 114 PTPGALSFAGL------------PSSRP--------YGIKPEPLSARRGDCPTLDTHTLS 153
           P PG    AG             PS  P        YGIKPE    R    P     T S
Sbjct: 112 PLPGFPGGAGGGGGGGGGGPGRGPSPGPSGPANGRHYGIKPE---TRAAPAPATAASTTS 168

Query: 154 LTDYACGSPP------VDREKQPSEG------AFSENNAENESGGDKP------------ 189
            +  +  S        V RE Q S G      +F +  A    GG+ P            
Sbjct: 169 SSSTSLSSSSKRTECSVARESQGSSGPEFSCNSFLQEKAAGGDGGNGPGAGIGAATGTGG 228

Query: 190 ------------------------------PIDPNNPAANWLHARSTRKKRCPYTKHQTL 219
                                          +DPNNP ANW+HARSTRKKRCPYTK+QTL
Sbjct: 229 SSEPSACSDHPIPGCSLKEEEKQHSQPQQQQLDPNNPEANWIHARSTRKKRCPYTKYQTL 288

Query: 220 ELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKINKDR 268
           ELEKEFLFNMYLTRDRRYEVAR+LNLTERQVKIWFQNRRMKMKK++K++
Sbjct: 289 ELEKEFLFNMYLTRDRRYEVARILNLTERQVKIWFQNRRMKMKKMSKEK 337



>gi|20141612|sp|Q9NYD6|HXC10_HUMAN   Homeobox protein Hox-C10
          Length = 342

 Score =  133 bits (334), Expect = 7e-32
 Identities = 63/108 (58%), Positives = 81/108 (75%), Gaps = 3/108 (2%)

Query: 160 GSPPVDREKQPSEGAFSENNAENESGGDKPPIDPNNPAANWLHARSTRKKRCPYTKHQTL 219
           GSP    +++      S + ++NE+   K  I   N   NWL A+S RKKRCPYTKHQTL
Sbjct: 225 GSPSESEKERAKAADSSPDTSDNEA---KEEIKAENTTGNWLTAKSGRKKRCPYTKHQTL 281

Query: 220 ELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKINKD 267
           ELEKEFLFNMYLTR+RR E+++ +NLT+RQVKIWFQNRRMK+KK+N++
Sbjct: 282 ELEKEFLFNMYLTRERRLEISKTINLTDRQVKIWFQNRRMKLKKMNRE 329



>gi|13124743|sp|P31260|HXA10_HUMAN   Homeobox protein Hox-A10 (Hox-1H) (Hox-1.8) (PL)
          Length = 393

 Score =  128 bits (322), Expect = 2e-30
 Identities = 70/119 (58%), Positives = 83/119 (69%), Gaps = 9/119 (7%)

Query: 158 ACGS---PPVDREKQPSEGAFSE-NNAENESGGDKPPIDP-----NNPAANWLHARSTRK 208
           ACGS      D E   S  A  E + A +ES    P  D         AANWL A+S RK
Sbjct: 262 ACGSGGGSQGDEEAHASSSAAEELSPAPSESSKASPEKDSLGNSKGENAANWLTAKSGRK 321

Query: 209 KRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKINKD 267
           KRCPYTKHQTLELEKEFLFNMYLTR+RR E++R ++LT+RQVKIWFQNRRMK+KK+N++
Sbjct: 322 KRCPYTKHQTLELEKEFLFNMYLTRERRLEISRSVHLTDRQVKIWFQNRRMKLKKMNRE 380



>gi|123289|sp|P28358|HXD10_HUMAN   Homeobox protein Hox-D10 (Hox-4D) (Hox-4E)
          Length = 340

 Score =  127 bits (320), Expect = 3e-30
 Identities = 64/110 (58%), Positives = 79/110 (71%), Gaps = 3/110 (2%)

Query: 158 ACGSPPVDREKQPSEGAFSENNAENESGGDKPPIDPNNPAANWLHARSTRKKRCPYTKHQ 217
           A G  P +R         S    E ES   K  I  + P +NWL A+S RKKRCPYTKHQ
Sbjct: 221 AKGGLPEERSCLAEVSVSSPEVQEKES---KEEIKSDTPTSNWLTAKSGRKKRCPYTKHQ 277

Query: 218 TLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKINKD 267
           TLELEKEFLFNMYLTR+RR E+++ +NLT+RQVKIWFQNRRMK+KK++++
Sbjct: 278 TLELEKEFLFNMYLTRERRLEISKSVNLTDRQVKIWFQNRRMKLKKMSRE 327



>gi|13124744|sp|P31270|HXA11_HUMAN   Homeobox protein Hox-A11 (Hox-1I)
          Length = 313

 Score =  103 bits (257), Expect = 6e-23
 Identities = 60/156 (38%), Positives = 84/156 (53%), Gaps = 11/156 (7%)

Query: 123 GLPSSRPYGIKPEPLSARRGDCPTLDTHTLSLTDYACGSPPVDREKQPSEGAFSENNAE- 181
           G P +      P   SA +G  P     + +    A G+P          G   E  A  
Sbjct: 149 GTPENLASSDYPGDKSAEKGP-PAATATSAAAAAAATGAPATSSSDSGGGGGCRETAAAA 207

Query: 182 NESGGDKPPIDPNNPAANWLHARS---------TRKKRCPYTKHQTLELEKEFLFNMYLT 232
            E    + P   ++P ++  H            TRKKRCPYTK+Q  ELE+EF F++Y+ 
Sbjct: 208 EEKERRRRPESSSSPESSSGHTEDKAGGSSGQRTRKKRCPYTKYQIRELEREFFFSVYIN 267

Query: 233 RDRRYEVARLLNLTERQVKIWFQNRRMKMKKINKDR 268
           +++R +++R+LNLT+RQVKIWFQNRRMK KKIN+DR
Sbjct: 268 KEKRLQLSRMLNLTDRQVKIWFQNRRMKEKKINRDR 303



>gi|12644203|sp|P31277|HXD11_HUMAN   Homeobox protein Hox-D11 (Hox-4F)
          Length = 338

 Score =  103 bits (256), Expect = 8e-23
 Identities = 49/98 (50%), Positives = 73/98 (74%), Gaps = 2/98 (2%)

Query: 173 GAFSENNAENESG-GDKPPIDPN-NPAANWLHARSTRKKRCPYTKHQTLELEKEFLFNMY 230
           G+  +  AE   G G+ PP +     +++ +  + +RKKRCPYTK+Q  ELE+EF FN+Y
Sbjct: 231 GSEPKGAAEGSGGDGEGPPGEAGAEKSSSAVAPQRSRKKRCPYTKYQIRELEREFFFNVY 290

Query: 231 LTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKINKDR 268
           + +++R +++R+LNLT+RQVKIWFQNRRMK KK+N+DR
Sbjct: 291 INKEKRLQLSRMLNLTDRQVKIWFQNRRMKEKKLNRDR 328



>gi|3287858|sp|O43248|HXC11_HUMAN   Homeobox protein Hox-C11
          Length = 304

 Score =  101 bits (251), Expect = 3e-22
 Identities = 48/103 (46%), Positives = 67/103 (65%)

Query: 166 REKQPSEGAFSENNAENESGGDKPPIDPNNPAANWLHARSTRKKRCPYTKHQTLELEKEF 225
           R +  +E    E N    S G    +          +A  TRKKRCPY+K Q  ELE+EF
Sbjct: 192 RAEAGAEAEAEEENTNPSSSGSAHSVAKEPAKGAAPNAPRTRKKRCPYSKFQIRELEREF 251

Query: 226 LFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKINKDR 268
            FN+Y+ +++R +++R+LNLT+RQVKIWFQNRRMK KK+++DR
Sbjct: 252 FFNVYINKEKRLQLSRMLNLTDRQVKIWFQNRRMKEKKLSRDR 294



>gi|232262|sp|Q00444|HXC5_HUMAN   Homeobox protein Hox-C5 (Hox-3D) (CP11)
          Length = 222

 Score = 93.2 bits (230), Expect = 8e-20
 Identities = 53/117 (45%), Positives = 68/117 (58%), Gaps = 10/117 (8%)

Query: 163 PVDREKQPSEGAFSENNAEN--ESGGDKPPIDPNNPAANWL------HARSTRKKRCPYT 214
           P   E+  S G   E  A+    +G  +PP  P      W+      H    ++ R  YT
Sbjct: 106 PALEERAKSSGEIKEEQAQTGQPAGLSQPPAPPQ--IYPWMTKLHMSHETDGKRSRTSYT 163

Query: 215 KHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKINKDRAKD 271
           ++QTLELEKEF FN YLTR RR E+A  L L ERQ+KIWFQNRRMK KK +K ++K+
Sbjct: 164 RYQTLELEKEFHFNRYLTRRRRIEIANNLCLNERQIKIWFQNRRMKWKKDSKMKSKE 220



>gi|17378385|sp|P31267|HXA6_HUMAN   Homeobox protein Hox-A6 (Hox-1B)
          Length = 233

 Score = 92.8 bits (229), Expect = 1e-19
 Identities = 55/118 (46%), Positives = 67/118 (56%), Gaps = 10/118 (8%)

Query: 156 DYACGSPPVDREKQPSEGAFSENNAENESGGDKPPIDP-------NNPAANWLHARSTRK 208
           DY   SP    +   S G   +  A ++ G D+    P        N  A  ++    R+
Sbjct: 101 DYLHFSPEQQYKPDSSSG---QGKALHDEGADRKYTSPVYPWMQRMNSCAGAVYGSHGRR 157

Query: 209 KRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKINK 266
            R  YT++QTLELEKEF FN YLTR RR E+A  L LTERQ+KIWFQNRRMK KK NK
Sbjct: 158 GRQTYTRYQTLELEKEFHFNRYLTRRRRIEIANALCLTERQIKIWFQNRRMKWKKENK 215



>gi|13124745|sp|P31273|HXC8_HUMAN   Homeobox protein Hox-C8 (Hox-3A)
          Length = 242

 Score = 91.7 bits (226), Expect = 2e-19
 Identities = 50/75 (66%), Positives = 56/75 (74%), Gaps = 4/75 (5%)

Query: 202 HARSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKM 261
           HA   R  R  Y+++QTLELEKEFLFN YLTR RR EV+  L LTERQVKIWFQNRRMK 
Sbjct: 145 HAPGRRSGRQTYSRYQTLELEKEFLFNPYLTRKRRIEVSHALGLTERQVKIWFQNRRMKW 204

Query: 262 KK-INKDR---AKDE 272
           KK  NKD+   A+DE
Sbjct: 205 KKENNKDKLPGARDE 219



>gi|6016293|sp|O43365|HXA3_HUMAN   Homeobox protein Hox-A3 (Hox-1E)
          Length = 443

 Score = 91.7 bits (226), Expect = 2e-19
 Identities = 61/159 (38%), Positives = 82/159 (51%), Gaps = 18/159 (11%)

Query: 114 PTPGALSFAGLP----SSRPYGIKPEPLSARRGDCPTLDTHTLSLTDYACGSPPVDREKQ 169
           P P A + A  P    +S P      P  A     P L++ T++   +    P +   +Q
Sbjct: 109 PQPPAPTPAAPPPPSSASPPQNASNNPTPANAAKSPLLNSPTVAKQIF----PWMKESRQ 164

Query: 170 PSEGAFSENNAENESGGDKPPIDPNNPAANWLHARSTRKKRCPYTKHQTLELEKEFLFNM 229
            ++   S +++     GDK P  P           S+++ R  YT  Q +ELEKEF FN 
Sbjct: 165 NTKQKTSSSSSGESCAGDKSP--PGQA--------SSKRARTAYTSAQLVELEKEFHFNR 214

Query: 230 YLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKINKDR 268
           YL R RR E+A LLNLTERQ+KIWFQNRRMK KK  K +
Sbjct: 215 YLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKDQKGK 253



>gi|20141506|sp|P17481|HXB8_HUMAN   Homeobox protein Hox-B8 (Hox-2D) (Hox-2.4)
          Length = 243

 Score = 88.6 bits (218), Expect = 2e-18
 Identities = 46/67 (68%), Positives = 52/67 (77%), Gaps = 1/67 (1%)

Query: 203 ARSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMK 262
           A   R+ R  Y+++QTLELEKEFLFN YLTR RR EV+  L LTERQVKIWFQNRRMK K
Sbjct: 143 AAGRRRGRQTYSRYQTLELEKEFLFNPYLTRKRRIEVSHALGLTERQVKIWFQNRRMKWK 202

Query: 263 K-INKDR 268
           K  NKD+
Sbjct: 203 KENNKDK 209



>gi|123255|sp|P09629|HXB7_HUMAN   Homeobox protein Hox-B7 (Hox-2C) (HHO.C1)
          Length = 217

 Score = 88.2 bits (217), Expect = 3e-18
 Identities = 44/69 (63%), Positives = 52/69 (75%), Gaps = 2/69 (2%)

Query: 200 WLHARSTRKKRC--PYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNR 257
           W+ +  T +KR    YT++QTLELEKEF +N YLTR RR E+A  L LTERQ+KIWFQNR
Sbjct: 129 WMRSSGTDRKRGRQTYTRYQTLELEKEFHYNRYLTRRRRIEIAHTLCLTERQIKIWFQNR 188

Query: 258 RMKMKKINK 266
           RMK KK NK
Sbjct: 189 RMKWKKENK 197



>gi|3915721|sp|P31268|HXA7_HUMAN   Homeobox protein Hox-A7 (Hox-1A) (Hox 1.1)
          Length = 230

 Score = 87.4 bits (215), Expect = 5e-18
 Identities = 44/70 (62%), Positives = 52/70 (74%), Gaps = 2/70 (2%)

Query: 200 WLHARSTRKKRC--PYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNR 257
           W+ +    +KR    YT++QTLELEKEF FN YLTR RR E+A  L LTERQ+KIWFQNR
Sbjct: 122 WMRSSGPDRKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNR 181

Query: 258 RMKMKKINKD 267
           RMK KK +KD
Sbjct: 182 RMKWKKEHKD 191



>gi|13124738|sp|P17509|HXB6_HUMAN   Homeobox protein Hox-B6 (Hox-2B) (Hox-2.2) (HU-2)
          Length = 224

 Score = 86.7 bits (213), Expect = 8e-18
 Identities = 52/110 (47%), Positives = 64/110 (58%), Gaps = 5/110 (4%)

Query: 162 PPVDREKQPSEGA-----FSENNAENESGGDKPPIDPNNPAANWLHARSTRKKRCPYTKH 216
           PP   E + S+ A     F E   +  S    P +   N   +     S R+ R  YT++
Sbjct: 97  PPFHPEPRKSDCAQDKSVFGETEEQKCSTPVYPWMQRMNSCNSSSFGPSGRRGRQTYTRY 156

Query: 217 QTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKINK 266
           QTLELEKEF +N YLTR RR E+A  L LTERQ+KIWFQNRRMK KK +K
Sbjct: 157 QTLELEKEFHYNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKESK 206



>gi|13124737|sp|P13378|HXD8_HUMAN   Homeobox protein Hox-D8 (Hox-4E) (Hox-5.4)
          Length = 290

 Score = 86.3 bits (212), Expect = 1e-17
 Identities = 46/67 (68%), Positives = 51/67 (76%), Gaps = 1/67 (1%)

Query: 203 ARSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMK 262
           A   R+ R  Y++ QTLELEKEFLFN YLTR RR EV+  L LTERQVKIWFQNRRMK K
Sbjct: 194 APGRRRGRQTYSRFQTLELEKEFLFNPYLTRKRRIEVSHALALTERQVKIWFQNRRMKWK 253

Query: 263 K-INKDR 268
           K  NKD+
Sbjct: 254 KENNKDK 260



>gi|52788238|sp|P20719|HXA5_HUMAN   Homeobox protein Hox-A5 (Hox-1C)
          Length = 270

 Score = 86.3 bits (212), Expect = 1e-17
 Identities = 50/101 (49%), Positives = 58/101 (57%), Gaps = 8/101 (7%)

Query: 174 AFSENNAENESGGDKPPIDPN-NPAANWLHARST-------RKKRCPYTKHQTLELEKEF 225
           A SE  +        PP  P   P    LH           ++ R  YT++QTLELEKEF
Sbjct: 155 ASSEQASAQSEPSPAPPAQPQIYPWMRKLHISHDNIGGPEGKRARTAYTRYQTLELEKEF 214

Query: 226 LFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKINK 266
            FN YLTR RR E+A  L L+ERQ+KIWFQNRRMK KK NK
Sbjct: 215 HFNRYLTRRRRIEIAHALCLSERQIKIWFQNRRMKWKKDNK 255



>gi|400000|sp|P09067|HXB5_HUMAN   Homeobox protein Hox-B5 (Hox-2A) (HHO.C10) (HU-1)
          Length = 269

 Score = 85.9 bits (211), Expect = 1e-17
 Identities = 41/60 (68%), Positives = 48/60 (80%)

Query: 207 RKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKINK 266
           ++ R  YT++QTLELEKEF FN YLTR RR E+A  L L+ERQ+KIWFQNRRMK KK NK
Sbjct: 195 KRARTAYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLSERQIKIWFQNRRMKWKKDNK 254



>gi|123268|sp|P14651|HXB3_HUMAN   Homeobox protein Hox-B3 (Hox-2G) (Hox-2.7)
          Length = 431

 Score = 84.0 bits (206), Expect = 5e-17
 Identities = 46/82 (56%), Positives = 54/82 (65%), Gaps = 10/82 (12%)

Query: 185 GGDKPPIDPNNPAANWLHARSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLN 244
           GGDK P  P + A+        ++ R  YT  Q +ELEKEF FN YL R RR E+A LLN
Sbjct: 177 GGDKSP--PGSAAS--------KRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLN 226

Query: 245 LTERQVKIWFQNRRMKMKKINK 266
           L+ERQ+KIWFQNRRMK KK  K
Sbjct: 227 LSERQIKIWFQNRRMKYKKDQK 248



>gi|123270|sp|P14652|HXB2_HUMAN   Homeobox protein Hox-B2 (Hox-2H) (Hox-2.8) (K8)
          Length = 356

 Score = 84.0 bits (206), Expect = 5e-17
 Identities = 51/104 (49%), Positives = 61/104 (58%), Gaps = 6/104 (5%)

Query: 168 KQPSEGAFSENNAENE---SGGDKPPIDPNNPAANWLHARSTRKKRCPYTKHQTLELEKE 224
           K+PS+ A S + A +    SG   P      P A        R+ R  YT  Q LELEKE
Sbjct: 105 KKPSQSATSPSPAASAVPASGVGSPADGLGLPEAG---GGGARRLRTAYTNTQLLELEKE 161

Query: 225 FLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKINKDR 268
           F FN YL R RR E+A LL+LTERQVK+WFQNRRMK K+  + R
Sbjct: 162 FHFNKYLCRPRRVEIAALLDLTERQVKVWFQNRRMKHKRQTQHR 205



>gi|6166222|sp|P31249|HXD3_HUMAN   Homeobox protein Hox-D3 (Hox-4A)
          Length = 416

 Score = 83.2 bits (204), Expect = 9e-17
 Identities = 46/84 (54%), Positives = 53/84 (63%), Gaps = 11/84 (13%)

Query: 183 ESGGDKPPIDPNNPAANWLHARSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARL 242
           ES  DK P  P           ++++ R  YT  Q +ELEKEF FN YL R RR E+A L
Sbjct: 166 ESCEDKSPPGP-----------ASKRVRTAYTSAQLVELEKEFHFNRYLCRPRRVEMANL 214

Query: 243 LNLTERQVKIWFQNRRMKMKKINK 266
           LNLTERQ+KIWFQNRRMK KK  K
Sbjct: 215 LNLTERQIKIWFQNRRMKYKKDQK 238



>gi|1709079|sp|P50222|MEOX2_HUMAN   Homeobox protein MOX-2 (Mesenchyme homeobox 2) (Growth
           arrest-specific homeobox)
          Length = 303

 Score = 83.2 bits (204), Expect = 9e-17
 Identities = 55/127 (43%), Positives = 73/127 (57%), Gaps = 13/127 (10%)

Query: 145 PTLDTHTLSL-----TDYACGSPPVDREKQPSEGAFSENNAENESGGDKPPIDPNNPAAN 199
           P L +++ SL     T  AC   P D  +Q    A S   AE  SGG +     ++   N
Sbjct: 124 PVLCSNSSSLGSSTPTGAACA--PGDYGRQ----ALSPAEAEKRSGGKRKSDSSDSQEGN 177

Query: 200 WLHARST--RKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNR 257
           +    ++  RK+R  +TK Q  ELE EF  + YLTR RRYE+A  L+LTERQVK+WFQNR
Sbjct: 178 YKSEVNSKPRKERTAFTKEQIRELEAEFAHHNYLTRLRRYEIAVNLDLTERQVKVWFQNR 237

Query: 258 RMKMKKI 264
           RMK K++
Sbjct: 238 RMKWKRV 244



>gi|1345720|sp|P47902|CDX1_HUMAN   Homeobox protein CDX-1 (Caudal-type homeobox protein 1)
          Length = 265

 Score = 82.4 bits (202), Expect = 1e-16
 Identities = 56/159 (35%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 116 PGALSFAGLPSSRPYGIKPE--PLSARRGDCPTLDTHTLSLTDYACGSPPVDREKQPSEG 173
           PG  + A  P+S  +G  P+  P+ A  G  P L    L       G+P     ++P+  
Sbjct: 78  PGPAAPAASPASLAFGPPPDFSPVPAPPGPGPGLLAQPLG----GPGTPSSPGAQRPTPY 133

Query: 174 AFSENNAENESGGDKPPIDPNNPAANWLHARSTRKKRCPYTKHQTLELEKEFLFNMYLTR 233
            +   +     GG                 R+  K R  YT HQ LELEKEF ++ Y+T 
Sbjct: 134 EWMRRSVAAGGGGGSGK------------TRTKDKYRVVYTDHQRLELEKEFHYSRYITI 181

Query: 234 DRRYEVARLLNLTERQVKIWFQNRRMKMKKINKDRAKDE 272
            R+ E+A  L LTERQVKIWFQNRR K +K+NK + + +
Sbjct: 182 RRKSELAANLGLTERQVKIWFQNRRAKERKVNKKKQQQQ 220



>gi|6166217|sp|Q00056|HXA4_HUMAN   Homeobox protein Hox-A4 (Hox-1D) (Hox-1.4)
          Length = 320

 Score = 82.4 bits (202), Expect = 1e-16
 Identities = 43/72 (59%), Positives = 50/72 (69%), Gaps = 3/72 (4%)

Query: 195 NPAANWLHARSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWF 254
           NP+ N       ++ R  YT+ Q LELEKEF FN YLTR RR E+A  L L+ERQVKIWF
Sbjct: 207 NPSYN---GGEPKRSRTAYTRQQVLELEKEFHFNRYLTRRRRIEIAHTLCLSERQVKIWF 263

Query: 255 QNRRMKMKKINK 266
           QNRRMK KK +K
Sbjct: 264 QNRRMKWKKDHK 275



>gi|1708540|sp|P52945|IPF1_HUMAN   Insulin promoter factor-1 (IPF-1) (Pancreas/duodenum homeobox-1)
           (PDX-1) (Islet/duodenum homeobox-1) (IDX-1)
           (Somatostatin transactivating factor-1) (STF-1) (Insulin
           upstream factor-1) (IUF-1) (Glucose-sensitive factor)
           (GSF)
          Length = 283

 Score = 82.0 bits (201), Expect = 2e-16
 Identities = 38/57 (66%), Positives = 46/57 (80%)

Query: 207 RKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKK 263
           ++ R  YT+ Q LELEKEFLFN Y++R RR E+A +LNLTER +KIWFQNRRMK KK
Sbjct: 147 KRTRTAYTRAQLLELEKEFLFNKYISRPRRVELAVMLNLTERHIKIWFQNRRMKWKK 203



>gi|12644227|sp|P35452|HXD12_HUMAN   Homeobox protein Hox-D12 (Hox-4H)
          Length = 275

 Score = 82.0 bits (201), Expect = 2e-16
 Identities = 51/139 (36%), Positives = 70/139 (50%), Gaps = 12/139 (8%)

Query: 137 LSARRGDCPTLDTHTLSLTDYACGSPPVDREKQPSEGAFSENNAENESG----------- 185
           L A + D   +   T   T    G+P     K  ++G  + N     +G           
Sbjct: 128 LKAAKYDYAGVGRATPGSTTLLQGAPCAPGFKDDTKGPLNLNMTVQAAGVASCLRPSLPD 187

Query: 186 GDKPPIDPNNPAANWLHARSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNL 245
           G + P  P  PA       + RKKR PYTK Q  ELE EFL N ++ R +R E++  LNL
Sbjct: 188 GKRCPCSPGRPAVGGGPGEA-RKKRKPYTKQQIAELENEFLVNEFINRQKRKELSNRLNL 246

Query: 246 TERQVKIWFQNRRMKMKKI 264
           +++QVKIWFQNRRMK K++
Sbjct: 247 SDQQVKIWFQNRRMKKKRV 265



>gi|20141493|sp|P09630|HXC6_HUMAN   Homeobox protein Hox-C6 (Hox-3C) (HHO.C8) (CP25)
          Length = 235

 Score = 82.0 bits (201), Expect = 2e-16
 Identities = 40/57 (70%), Positives = 46/57 (80%)

Query: 207 RKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKK 263
           R+ R  Y+++QTLELEKEF FN YLTR RR E+A  L LTERQ+KIWFQNRRMK KK
Sbjct: 142 RRGRQIYSRYQTLELEKEFHFNRYLTRRRRIEIANALCLTERQIKIWFQNRRMKWKK 198



>gi|20141491|sp|P09016|HXD4_HUMAN   Homeobox protein Hox-D4 (Hox-4B) (Hox-5.1) (HHO.C13)
          Length = 255

 Score = 81.6 bits (200), Expect = 2e-16
 Identities = 39/60 (65%), Positives = 46/60 (76%)

Query: 207 RKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKINK 266
           ++ R  YT+ Q LELEKEF FN YLTR RR E+A  L L+ERQ+KIWFQNRRMK KK +K
Sbjct: 155 KRSRTAYTRQQVLELEKEFHFNRYLTRRRRIEIAHTLCLSERQIKIWFQNRRMKWKKDHK 214



>gi|20141538|sp|P31275|HXC12_HUMAN   Homeobox protein Hox-C12 (Hox-3F)
          Length = 282

 Score = 81.6 bits (200), Expect = 2e-16
 Identities = 47/106 (44%), Positives = 61/106 (57%), Gaps = 8/106 (7%)

Query: 167 EKQPSEGAFSENNAENESGGDKPPIDPNNPA-------ANWLHARS-TRKKRCPYTKHQT 218
           E   S    +E N    +G     + P NP        A W    S +RKKR PY+K Q 
Sbjct: 167 ESDSSSSLLNEGNKGAGAGDPGSLVSPLNPGGGLSASGAPWYPINSRSRKKRKPYSKLQL 226

Query: 219 LELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKI 264
            ELE EFL N ++TR RR E++  LNL+++QVKIWFQNRRMK K++
Sbjct: 227 AELEGEFLVNEFITRQRRRELSDRLNLSDQQVKIWFQNRRMKKKRL 272



>gi|547692|sp|P17483|HXB4_HUMAN   Homeobox protein Hox-B4 (Hox-2F) (Hox-2.6)
          Length = 251

 Score = 80.5 bits (197), Expect = 6e-16
 Identities = 38/60 (63%), Positives = 46/60 (76%)

Query: 207 RKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKINK 266
           ++ R  YT+ Q LELEKEF +N YLTR RR E+A  L L+ERQ+KIWFQNRRMK KK +K
Sbjct: 163 KRSRTAYTRQQVLELEKEFHYNRYLTRRRRVEIAHALCLSERQIKIWFQNRRMKWKKDHK 222



>gi|6016292|sp|O43364|HXA2_HUMAN   Homeobox protein Hox-A2
          Length = 376

 Score = 80.5 bits (197), Expect = 6e-16
 Identities = 39/58 (67%), Positives = 45/58 (77%)

Query: 206 TRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKK 263
           +R+ R  YT  Q LELEKEF FN YL R RR E+A LL+LTERQVK+WFQNRRMK K+
Sbjct: 143 SRRLRTAYTNTQLLELEKEFHFNKYLCRPRRVEIAALLDLTERQVKVWFQNRRMKHKR 200



>gi|123279|sp|P09017|HXC4_HUMAN   Homeobox protein Hox-C4 (Hox-3E) (CP19)
          Length = 264

 Score = 79.3 bits (194), Expect = 1e-15
 Identities = 37/57 (64%), Positives = 44/57 (77%)

Query: 207 RKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKK 263
           ++ R  YT+ Q LELEKEF +N YLTR RR E+A  L L+ERQ+KIWFQNRRMK KK
Sbjct: 157 KRSRAAYTRQQVLELEKEFHYNRYLTRRRRIEIAHSLCLSERQIKIWFQNRRMKWKK 213



>gi|1709078|sp|P50221|MEOX1_HUMAN   Homeobox protein MOX-1 (Mesenchyme homeobox 1)
          Length = 254

 Score = 77.8 bits (190), Expect = 4e-15
 Identities = 50/137 (36%), Positives = 68/137 (49%), Gaps = 20/137 (14%)

Query: 136 PLSARRGDCPTLDTHTLSLTDYACGSPPVD--------REKQPSEGAFSENNAENESGGD 187
           P S   G    + T +L L D   G P  D         E +       + +++N+    
Sbjct: 105 PNSGPAGGSKEMGTSSLGLVD-TTGGPGDDYGVLGSTANETEKKSSRRRKESSDNQENRG 163

Query: 188 KPPIDPNNPAANWLHARSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTE 247
           KP             +   RK+R  +TK Q  ELE EF  + YLTR RRYE+A  L+L+E
Sbjct: 164 KPE-----------GSSKARKERTAFTKEQLRELEAEFAHHNYLTRLRRYEIAVNLDLSE 212

Query: 248 RQVKIWFQNRRMKMKKI 264
           RQVK+WFQNRRMK K++
Sbjct: 213 RQVKVWFQNRRMKWKRV 229



>gi|20141282|sp|Q99626|CDX2_HUMAN   Homeobox protein CDX-2 (Caudal-type homeobox protein 2) (CDX-3)
          Length = 313

 Score = 77.4 bits (189), Expect = 5e-15
 Identities = 38/69 (55%), Positives = 49/69 (71%)

Query: 204 RSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKK 263
           R+  K R  YT HQ LELEKEF ++ Y+T  R+ E+A  L L+ERQVKIWFQNRR K +K
Sbjct: 184 RTKDKYRVVYTDHQRLELEKEFHYSRYITIRRKAELAATLGLSERQVKIWFQNRRAKERK 243

Query: 264 INKDRAKDE 272
           INK + + +
Sbjct: 244 INKKKLQQQ 252



>gi|27923786|sp|Q9H4S2|GSHI_HUMAN   Homeobox protein GSH-1
          Length = 264

 Score = 76.3 bits (186), Expect = 1e-14
 Identities = 37/62 (59%), Positives = 47/62 (75%)

Query: 205 STRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKI 264
           S+++ R  +T  Q LELE+EF  NMYL+R RR E+A  LNL+E+QVKIWFQNRR+K KK 
Sbjct: 146 SSKRMRTAFTSTQLLELEREFASNMYLSRLRRIEIATYLNLSEKQVKIWFQNRRVKHKKE 205

Query: 265 NK 266
            K
Sbjct: 206 GK 207



>gi|3023467|sp|O14627|CDX4_HUMAN   Homeobox protein CDX-4 (Caudal-type homeobox protein 4)
          Length = 284

 Score = 75.5 bits (184), Expect = 2e-14
 Identities = 61/183 (33%), Positives = 83/183 (45%), Gaps = 35/183 (19%)

Query: 112 LEPTPGALSFAGLPSSRP---YGIKPEPLSARRGDCPTLDTHT----LSLTDYACGSPPV 164
           ++P   +L   G P S P   + + P P S+  G  P  D  +       TDY+      
Sbjct: 62  MDPHWPSLGVWGSPYSPPREDWSVYPGP-SSTMGTVPVNDVTSSPAAFCSTDYS------ 114

Query: 165 DREKQPSEGAFSENNAENESGGDKPPIDPNNPAAN-----------WLH--------ARS 205
                P  G  S ++   ++GG   P D     A+           W+          R+
Sbjct: 115 --NLGPVGGGTSGSSLPGQAGGSLVPTDAGAAKASSPSRSRHSPYAWMRKTVQVTGKTRT 172

Query: 206 TRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKIN 265
             K R  YT HQ LELEKEF  N Y+T  R+ E+A  L L+ERQVKIWFQNRR K +K+ 
Sbjct: 173 KEKYRVVYTDHQRLELEKEFHCNRYITIQRKSELAVNLGLSERQVKIWFQNRRAKERKMI 232

Query: 266 KDR 268
           K +
Sbjct: 233 KKK 235



>gi|2828197|sp|P31271|HXA13_HUMAN   Homeobox protein Hox-A13 (Hox-1J)
          Length = 388

 Score = 74.7 bits (182), Expect = 3e-14
 Identities = 34/61 (55%), Positives = 45/61 (73%)

Query: 204 RSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKK 263
           R  RKKR PYTK Q  ELE+E+  N ++T+D+R  ++   NL+ERQV IWFQNRR+K KK
Sbjct: 320 RRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 379

Query: 264 I 264
           +
Sbjct: 380 V 380



>gi|123271|sp|P14653|HXB1_HUMAN   Homeobox protein Hox-B1 (Hox-2I)
          Length = 301

 Score = 73.9 bits (180), Expect = 5e-14
 Identities = 42/96 (43%), Positives = 51/96 (53%), Gaps = 18/96 (18%)

Query: 190 PIDPNNPAA---NWLHARSTRKK---------------RCPYTKHQTLELEKEFLFNMYL 231
           P +PN P A   +W+  +    K               R  +T  Q  ELEKEF FN YL
Sbjct: 169 PSEPNTPTARTFDWMKVKRNPPKTAKVSEPGLGSPSGLRTNFTTRQLTELEKEFHFNKYL 228

Query: 232 TRDRRYEVARLLNLTERQVKIWFQNRRMKMKKINKD 267
           +R RR E+A  L L E QVKIWFQNRRMK KK  ++
Sbjct: 229 SRARRVEIAATLELNETQVKIWFQNRRMKQKKRERE 264



>gi|20138327|sp|Q9BZM3|GSH2_HUMAN   Homeobox protein GSH-2
          Length = 304

 Score = 73.9 bits (180), Expect = 5e-14
 Identities = 36/60 (60%), Positives = 45/60 (75%)

Query: 207 RKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKINK 266
           ++ R  +T  Q LELE+EF  NMYL+R RR E+A  LNL+E+QVKIWFQNRR+K KK  K
Sbjct: 203 KRMRTAFTSTQLLELEREFSSNMYLSRLRRIEIATYLNLSEKQVKIWFQNRRVKHKKEGK 262



>gi|6166216|sp|P49639|HXA1_HUMAN   Homeobox protein Hox-A1 (Hox-1F)
          Length = 335

 Score = 73.2 bits (178), Expect = 9e-14
 Identities = 37/58 (63%), Positives = 40/58 (68%)

Query: 210 RCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKINKD 267
           R  +T  Q  ELEKEF FN YLTR RR E+A  L L E QVKIWFQNRRMK KK  K+
Sbjct: 233 RTNFTTKQLTELEKEFHFNKYLTRARRVEIAASLQLNETQVKIWFQNRRMKQKKREKE 290



>gi|20141539|sp|P31276|HXC13_HUMAN   Homeobox protein Hox-C13 (Hox-3G)
          Length = 330

 Score = 72.8 bits (177), Expect = 1e-13
 Identities = 36/76 (47%), Positives = 50/76 (65%), Gaps = 2/76 (2%)

Query: 189 PPIDPNNPAANWLHARSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTER 248
           P + P  P  +    R  RKKR PYTK Q  ELEKE+  + ++T+++R  ++   NL+ER
Sbjct: 245 PDVVPLQPEVS--SYRRGRKKRVPYTKVQLKELEKEYAASKFITKEKRRRISATTNLSER 302

Query: 249 QVKIWFQNRRMKMKKI 264
           QV IWFQNRR+K KK+
Sbjct: 303 QVTIWFQNRRVKEKKV 318



>gi|2851475|sp|P35453|HXD13_HUMAN   Homeobox protein Hox-D13 (Hox-4I)
          Length = 335

 Score = 72.8 bits (177), Expect = 1e-13
 Identities = 34/61 (55%), Positives = 43/61 (70%)

Query: 204 RSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKK 263
           R  RKKR PYTK Q  ELE E+  N ++ +D+R  ++   NL+ERQV IWFQNRR+K KK
Sbjct: 266 RRGRKKRVPYTKLQLKELENEYAINKFINKDKRRRISAATNLSERQVTIWFQNRRVKDKK 325

Query: 264 I 264
           I
Sbjct: 326 I 326



>gi|45644931|sp|P50219|HLXB9_HUMAN   Homeobox protein HB9
          Length = 403

 Score = 72.0 bits (175), Expect = 2e-13
 Identities = 35/60 (58%), Positives = 42/60 (70%)

Query: 207 RKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKINK 266
           R+ R  +T  Q LELE +F  N YL+R +R+EVA  L LTE QVKIWFQNRRMK K+  K
Sbjct: 244 RRPRTAFTSQQLLELEHQFKLNKYLSRPKRFEVATSLMLTETQVKIWFQNRRMKWKRSKK 303



>gi|50403792|sp|Q92826|HXB13_HUMAN   Homeobox protein Hox-B13
          Length = 284

 Score = 71.6 bits (174), Expect = 3e-13
 Identities = 31/61 (50%), Positives = 46/61 (75%)

Query: 204 RSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKK 263
           R  RKKR PY+K Q  ELE+E+  N ++T+D+R +++   +L+ERQ+ IWFQNRR+K KK
Sbjct: 214 RRGRKKRIPYSKGQLRELEREYAANKFITKDKRRKISAATSLSERQITIWFQNRRVKEKK 273

Query: 264 I 264
           +
Sbjct: 274 V 274



>gi|17378648|sp|Q9GZZ0|HXD1_HUMAN   Homeobox protein Hox-D1
          Length = 328

 Score = 70.5 bits (171), Expect = 6e-13
 Identities = 34/58 (58%), Positives = 41/58 (70%)

Query: 210 RCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKINKD 267
           R  ++  Q  ELEKEF FN YLTR RR E+A  L+L + QVKIWFQNRRMK KK  ++
Sbjct: 233 RTNFSTKQLTELEKEFHFNKYLTRARRIEIANCLHLNDTQVKIWFQNRRMKQKKRERE 290



>gi|6016205|sp|O95096|NKX22_HUMAN   Homeobox protein Nkx-2.2 (Homeobox protein NK-2 homolog B)
          Length = 273

 Score = 70.1 bits (170), Expect = 8e-13
 Identities = 43/122 (35%), Positives = 59/122 (48%), Gaps = 17/122 (13%)

Query: 153 SLTDYACGSPPVD---REKQPSEGAFSENNAENESGGDKPPIDPNNPAANWLHARSTRKK 209
           SL   A G+PP D   +  +PS     +N+ E   GG                A   RK+
Sbjct: 86  SLHGLAAGAPPQDSSSKSPEPSADESPDNDKETPGGGGD--------------AGKKRKR 131

Query: 210 RCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKINKDRA 269
           R  ++K QT ELE+ F    YL+   R  +A L+ LT  QVKIWFQN R KMK+   ++ 
Sbjct: 132 RVLFSKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKMKRARAEKG 191

Query: 270 KD 271
            +
Sbjct: 192 ME 193



>gi|13959687|sp|P35548|MSX2_HUMAN   Homeobox protein MSX-2 (Hox-8)
          Length = 267

 Score = 67.0 bits (162), Expect = 6e-12
 Identities = 41/97 (42%), Positives = 52/97 (53%), Gaps = 6/97 (6%)

Query: 176 SENNAEN-----ESGGDKPPIDPNNPAANWLHARST-RKKRCPYTKHQTLELEKEFLFNM 229
           SEN+ +      E G   PP    +P    L    T RK R P+T  Q L LE++F    
Sbjct: 106 SENSEDGAAWMQEPGRYSPPPRHTSPTTCTLRKHKTNRKPRTPFTTSQLLALERKFRQKQ 165

Query: 230 YLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKINK 266
           YL+   R E +  LNLTE QVKIWFQNRR K K++ +
Sbjct: 166 YLSIAERAEFSSSLNLTETQVKIWFQNRRAKAKRLQE 202



>gi|6016208|sp|O15522|NK28_HUMAN   Homeobox protein Nkx-2.8 (Homeobox protein NK-2 homolog H)
          Length = 239

 Score = 66.2 bits (160), Expect = 1e-11
 Identities = 49/146 (33%), Positives = 66/146 (45%), Gaps = 35/146 (23%)

Query: 124 LPSSRPYGIKPEP------LSARRGDCPTLDTHTLSLTDYACGSPPVDREKQPSEGAFSE 177
           LP   P    P+P      L + RG  P+ D  +L        SPP D  ++PS      
Sbjct: 25  LPRREPEPRAPQPDPCAAWLDSERGHYPSSDESSLET------SPP-DSSQRPSA----- 72

Query: 178 NNAENESGGDKPPIDPNNPAANWLHARSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRY 237
                             PA+    A   +K+R  ++K QTLELE+ F    YL+   R 
Sbjct: 73  -----------------RPASPGSDAEKRKKRRVLFSKAQTLELERRFRQQRYLSAPERE 115

Query: 238 EVARLLNLTERQVKIWFQNRRMKMKK 263
           ++A LL LT  QVKIWFQN R K+K+
Sbjct: 116 QLASLLRLTPTQVKIWFQNHRYKLKR 141



>gi|23503066|sp|P28360|MSX1_HUMAN   Homeobox protein MSX-1 (Hox-7)
          Length = 297

 Score = 65.5 bits (158), Expect = 2e-11
 Identities = 53/164 (32%), Positives = 75/164 (45%), Gaps = 16/164 (9%)

Query: 110 SWLEPTPGALSFAGLPSSRPYGIKPEPLSARRGDCPTLDTHTLSLTDYACGSP---PVDR 166
           S L P+ G  +  G  S++P G+ P  L A     P   +    L  ++ G     P D 
Sbjct: 72  SALAPSEGVQAAGG--SAQPLGVPPGSLGA-----PDAPSSPRPLGHFSVGGLLKLPEDA 124

Query: 167 EKQPSEGAFSENNAENESGGDKPP----IDPNNPAANWLHARSTRKKRCPYTKHQTLELE 222
             +       E     +S    PP    + P  PA      ++ RK R P+T  Q L LE
Sbjct: 125 LVKAESPEKPERTPWMQSPRFSPPPARRLSP--PACTLRKHKTNRKPRTPFTTAQLLALE 182

Query: 223 KEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKINK 266
           ++F    YL+   R E +  L+LTE QVKIWFQNRR K K++ +
Sbjct: 183 RKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNRRAKAKRLQE 226



>gi|1352398|sp|P49640|EVX1_HUMAN   Homeobox even-skipped homolog protein 1 (EVX-1)
          Length = 407

 Score = 64.7 bits (156), Expect = 3e-11
 Identities = 40/106 (37%), Positives = 58/106 (54%), Gaps = 11/106 (10%)

Query: 167 EKQPSEGAFSENNAENESGGDKPPIDPNNPAANWLHARST---------RKKRCPYTKHQ 217
           E Q S+G+ SE    + +GG + P   +N  +    ++ T         R+ R  +T+ Q
Sbjct: 137 EYQHSKGSGSEALVGSPNGGSETP--KSNGGSGGGGSQGTLACSASDQMRRYRTAFTREQ 194

Query: 218 TLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKK 263
              LEKEF    Y++R RR E+A  LNL E  +K+WFQNRRMK K+
Sbjct: 195 IARLEKEFYRENYVSRPRRCELAAALNLPETTIKVWFQNRRMKDKR 240



>gi|12644308|sp|P52951|GBX2_HUMAN   Homeobox protein GBX-2 (Gastrulation and brain-specific homeobox
           protein 2)
          Length = 348

 Score = 64.3 bits (155), Expect = 4e-11
 Identities = 31/66 (46%), Positives = 41/66 (62%)

Query: 207 RKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKINK 266
           R++R  +T  Q LELEKEF    YL+   R ++A  L L+E QVKIWFQNRR K K++  
Sbjct: 248 RRRRTAFTSEQLLELEKEFHCKKYLSLTERSQIAHALKLSEVQVKIWFQNRRAKWKRVKA 307

Query: 267 DRAKDE 272
             A  +
Sbjct: 308 GNANSK 313



>gi|12230077|sp|Q14549|GBX1_HUMAN   Homeobox protein GBX-1 (Gastrulation and brain-specific homeobox
           protein 1)
          Length = 139

 Score = 63.9 bits (154), Expect = 5e-11
 Identities = 31/59 (52%), Positives = 40/59 (67%)

Query: 206 TRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKI 264
           +R++R  +T  Q LELEKEF    YL+   R ++A  L L+E QVKIWFQNRR K K+I
Sbjct: 37  SRRRRTAFTSEQLLELEKEFHCKKYLSLTERSQIAHALKLSEVQVKIWFQNRRAKWKRI 95



>gi|29336920|sp|Q9BZE3|BARH1_HUMAN   BarH-like 1 homeobox protein (FKSG31 protein)
          Length = 327

 Score = 62.8 bits (151), Expect = 1e-10
 Identities = 35/87 (40%), Positives = 45/87 (51%), Gaps = 10/87 (11%)

Query: 177 ENNAENESGGDKPPIDPNNPAANWLHARSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRR 236
           E + E  S  D PP+    P          RK R  +T HQ  +LE+ F    YL+   R
Sbjct: 159 EGDREISSSRDSPPVRLKKP----------RKARTAFTDHQLAQLERSFERQKYLSVQDR 208

Query: 237 YEVARLLNLTERQVKIWFQNRRMKMKK 263
            E+A  LNLT+ QVK W+QNRR K K+
Sbjct: 209 MELAASLNLTDTQVKTWYQNRRTKWKR 235



>gi|12231013|sp|Q03828|EVX2_HUMAN   Homeobox even-skipped homolog protein 2 (EVX-2)
          Length = 476

 Score = 62.4 bits (150), Expect = 2e-10
 Identities = 30/61 (49%), Positives = 39/61 (63%)

Query: 203 ARSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMK 262
           A   R+ R  +T+ Q   LEKEF    Y++R RR E+A  LNL E  +K+WFQNRRMK K
Sbjct: 185 ADQVRRYRTAFTREQIARLEKEFYRENYVSRPRRCELAAALNLPETTIKVWFQNRRMKDK 244

Query: 263 K 263
           +
Sbjct: 245 R 245



>gi|1730095|sp|P52954|LBX1_HUMAN   Transcription factor LBX1
          Length = 280

 Score = 61.6 bits (148), Expect = 3e-10
 Identities = 29/60 (48%), Positives = 38/60 (63%)

Query: 204 RSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKK 263
           +  RK R  +T HQ  ELEK FL+  YL+   R ++A+ L LT  QV  WFQNRR K+K+
Sbjct: 122 KKRRKSRTAFTNHQIYELEKRFLYQKYLSPADRDQIAQQLGLTNAQVITWFQNRRAKLKR 181



>gi|27923815|sp|Q8TAU0|NKX23_HUMAN   Homeobox protein Nkx-2.3 (Homeobox protein NKX-2.3) (Homeobox
           protein NK-2 homolog C)
          Length = 364

 Score = 61.2 bits (147), Expect = 3e-10
 Identities = 46/134 (34%), Positives = 66/134 (49%), Gaps = 14/134 (10%)

Query: 142 GDCPTLDTHTLSLTDYACGSPPVDREKQP------SEGAFSENNAENESGGDKPPIDPNN 195
           G CP    HT+ L D +C S P + E++P      S+ +     +   +G  K   +   
Sbjct: 86  GLCPQGYVHTV-LRD-SC-SEPKEHEEEPEVVRDRSQKSCQLKKSLETAGDCKAAEESER 142

Query: 196 PAANWLHARSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQ 255
           P       RS RK R  +++ Q  ELE+ F    YL+   R  +A  L LT  QVKIWFQ
Sbjct: 143 PKP-----RSRRKPRVLFSQAQVFELERRFKQQRYLSAPEREHLASSLKLTSTQVKIWFQ 197

Query: 256 NRRMKMKKINKDRA 269
           NRR K K+  +D++
Sbjct: 198 NRRYKCKRQRQDKS 211



>gi|27923817|sp|Q9H2Z4|NK24_HUMAN   Homeobox protein Nkx-2.4 (Homeobox protein NKX2.4) (Homeobox
           protein NK-2 homolog D)
          Length = 353

 Score = 60.8 bits (146), Expect = 5e-10
 Identities = 30/70 (42%), Positives = 43/70 (61%)

Query: 203 ARSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMK 262
           A   RK+R  +++ Q  ELE+ F    YL+   R  +A +++LT  QVKIWFQN R KMK
Sbjct: 186 AAPRRKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMK 245

Query: 263 KINKDRAKDE 272
           +  KD+A  +
Sbjct: 246 RQAKDKAAQQ 255



>gi|1174819|sp|P43699|TITF1_HUMAN   Thyroid transcription factor 1 (Thyroid nuclear factor 1) (TTF-1)
           (Homeobox protein Nkx-2.1) (Homeobox protein NK-2
           homolog A)
          Length = 371

 Score = 60.5 bits (145), Expect = 6e-10
 Identities = 29/66 (43%), Positives = 42/66 (63%)

Query: 207 RKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKINK 266
           RK+R  +++ Q  ELE+ F    YL+   R  +A +++LT  QVKIWFQN R KMK+  K
Sbjct: 162 RKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQAK 221

Query: 267 DRAKDE 272
           D+A  +
Sbjct: 222 DKAAQQ 227



>gi|47117915|sp|Q9NY43|BARH2_HUMAN   BarH-like 2 homeobox protein
          Length = 387

 Score = 60.1 bits (144), Expect = 8e-10
 Identities = 33/91 (36%), Positives = 47/91 (51%), Gaps = 10/91 (10%)

Query: 173 GAFSENNAENESGGDKPPIDPNNPAANWLHARSTRKKRCPYTKHQTLELEKEFLFNMYLT 232
           G   E + E  S  + PP+           A+  RK R  ++ HQ  +LE+ F    YL+
Sbjct: 209 GTKEEGDREITSSRESPPV----------RAKKPRKARTAFSDHQLNQLERSFERQKYLS 258

Query: 233 RDRRYEVARLLNLTERQVKIWFQNRRMKMKK 263
              R ++A  LNLT+ QVK W+QNRR K K+
Sbjct: 259 VQDRMDLAAALNLTDTQVKTWYQNRRTKWKR 289



>gi|1708211|sp|P52952|NK25_HUMAN   Homeobox protein Nkx-2.5 (Homeobox protein NK-2 homolog E)
           (Cardiac-specific homeobox) (Homeobox protein CSX)
          Length = 324

 Score = 59.3 bits (142), Expect = 1e-09
 Identities = 30/66 (45%), Positives = 41/66 (62%)

Query: 203 ARSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMK 262
           AR  RK R  +++ Q  ELE+ F    YL+   R ++A +L LT  QVKIWFQNRR K K
Sbjct: 135 ARRRRKPRVLFSQAQVYELERRFKQQRYLSAPERDQLASVLKLTSTQVKIWFQNRRYKCK 194

Query: 263 KINKDR 268
           +  +D+
Sbjct: 195 RQRQDQ 200



>gi|547658|sp|Q03014|HHEX_HUMAN   Homeobox protein PRH (Hematopoietically expressed homeobox)
           (Homeobox protein HEX)
          Length = 270

 Score = 58.9 bits (141), Expect = 2e-09
 Identities = 29/67 (43%), Positives = 44/67 (65%), Gaps = 2/67 (2%)

Query: 201 LHARSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMK 260
           LH R   + R  ++  QT+ELEK+F    YL+   R  +A++L L+ERQVK WFQNRR K
Sbjct: 134 LHKRKGGQVR--FSNDQTIELEKKFETQKYLSPPERKRLAKMLQLSERQVKTWFQNRRAK 191

Query: 261 MKKINKD 267
            +++ ++
Sbjct: 192 WRRLKQE 198



>gi|21903415|sp|P19622|HME2_HUMAN   Homeobox protein engrailed-2 (Hu-En-2)
          Length = 333

 Score = 58.5 bits (140), Expect = 2e-09
 Identities = 27/60 (45%), Positives = 38/60 (63%)

Query: 204 RSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKK 263
           +  ++ R  +T  Q   L+ EF  N YLT  RR  +A+ L+L E Q+KIWFQN+R K+KK
Sbjct: 242 KEDKRPRTAFTAEQLQRLKAEFQTNRYLTEQRRQSLAQELSLNESQIKIWFQNKRAKIKK 301



>gi|3913487|sp|O60479|DLX3_HUMAN   Homeobox protein DLX-3
          Length = 287

 Score = 58.2 bits (139), Expect = 3e-09
 Identities = 29/64 (45%), Positives = 38/64 (59%)

Query: 204 RSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKK 263
           +  RK R  Y+ +Q   L++ F    YL    R E+A  L LT+ QVKIWFQNRR K KK
Sbjct: 127 KKVRKPRTIYSSYQLAALQRRFQKAQYLALPERAELAAQLGLTQTQVKIWFQNRRSKFKK 186

Query: 264 INKD 267
           + K+
Sbjct: 187 LYKN 190



>gi|13431329|sp|Q9UMQ3|BARX2_HUMAN   Homeobox protein BarH-like 2
          Length = 254

 Score = 58.2 bits (139), Expect = 3e-09
 Identities = 47/147 (31%), Positives = 69/147 (46%), Gaps = 17/147 (11%)

Query: 120 SFAGLPSSRPYGIKPEPLSARRGDCPTLDTHTLSLTDYACGSPPVDR--EKQPSEGAFSE 177
           S  G PS R Y     PL +     PT+ +H +  T     +    +  E   +E    E
Sbjct: 35  SCTGSPSLRAY-----PLLSVITRQPTVISHLVPATPGIAQALSCHQVTEAVSAEAPGGE 89

Query: 178 NNAENESGGDKPPIDPNNPAANWLHARSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRY 237
             A +ES  ++P      P          R+ R  +T+ Q + LEK+F    YL+   R 
Sbjct: 90  ALASSESETEQPTPRQKKP----------RRSRTIFTELQLMGLEKKFQKQKYLSTPDRL 139

Query: 238 EVARLLNLTERQVKIWFQNRRMKMKKI 264
           ++A+ L LT+ QVK W+QNRRMK KK+
Sbjct: 140 DLAQSLGLTQLQVKTWYQNRRMKWKKM 166



>gi|17377578|sp|Q99801|NKX31_HUMAN   Homeobox protein Nkx-3.1
          Length = 234

 Score = 58.2 bits (139), Expect = 3e-09
 Identities = 33/86 (38%), Positives = 47/86 (54%), Gaps = 10/86 (11%)

Query: 179 NAENESGG-DKPPIDPNNPAANWLHARSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRY 237
           ++EN SG   + P  P  P          ++ R  ++  Q +ELE++F    YL+   R 
Sbjct: 105 DSENTSGALPRLPQTPKQPQ---------KRSRAAFSHTQVIELERKFSHQKYLSAPERA 155

Query: 238 EVARLLNLTERQVKIWFQNRRMKMKK 263
            +A+ L LTE QVKIWFQNRR K K+
Sbjct: 156 HLAKNLKLTETQVKIWFQNRRYKTKR 181



>gi|12644329|sp|P56178|DLX5_HUMAN   Homeobox protein DLX-5
          Length = 289

 Score = 58.2 bits (139), Expect = 3e-09
 Identities = 32/86 (37%), Positives = 46/86 (53%), Gaps = 2/86 (2%)

Query: 184 SGGDKPPIDPNNPAANWLHAR--STRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVAR 241
           S  ++P  +   P    ++ +    RK R  Y+  Q   L++ F    YL    R E+A 
Sbjct: 113 SATNQPEKEVTEPEVRMVNGKPKKVRKPRTIYSSFQLAALQRRFQKTQYLALPERAELAA 172

Query: 242 LLNLTERQVKIWFQNRRMKMKKINKD 267
            L LT+ QVKIWFQN+R K+KKI K+
Sbjct: 173 SLGLTQTQVKIWFQNKRSKIKKIMKN 198



>gi|2506529|sp|Q07687|DLX2_HUMAN   Homeobox protein DLX-2
          Length = 328

 Score = 57.8 bits (138), Expect = 4e-09
 Identities = 36/91 (39%), Positives = 47/91 (51%), Gaps = 3/91 (3%)

Query: 176 SENNAENESGGDKPPIDPNNPAANWLHARSTRKKRCPYTKHQTLELEKEFLFNMYLTRDR 235
           S + A NE   +K  ++P     N    +  RK R  Y+  Q   L++ F    YL    
Sbjct: 125 SSSPANNEP--EKEDLEPEIRIVNG-KPKKVRKPRTIYSSFQLAALQRRFQKTQYLALPE 181

Query: 236 RYEVARLLNLTERQVKIWFQNRRMKMKKINK 266
           R E+A  L LT+ QVKIWFQNRR K KK+ K
Sbjct: 182 RAELAASLGLTQTQVKIWFQNRRSKFKKMWK 212



>gi|27923733|sp|Q96QS3|ARX_HUMAN   Homeobox protein ARX (Aristaless-related homeobox)
          Length = 562

 Score = 57.8 bits (138), Expect = 4e-09
 Identities = 38/127 (29%), Positives = 57/127 (44%)

Query: 144 CPTLDTHTLSLTDYACGSPPVDREKQPSEGAFSENNAENESGGDKPPIDPNNPAANWLHA 203
           CP   T  ++    A  +          E      +AE + G D   +   + +   L  
Sbjct: 266 CPVAATGAVAAAAAAAVATEGGELSPKEELLLHPEDAEGKDGEDSVCLSAGSDSEEGLLK 325

Query: 204 RSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKK 263
           R  R+ R  +T +Q  ELE+ F    Y     R E+A  L+LTE +V++WFQNRR K +K
Sbjct: 326 RKQRRYRTTFTSYQLEELERAFQKTHYPDVFTREELAMRLDLTEARVQVWFQNRRAKWRK 385

Query: 264 INKDRAK 270
             K  A+
Sbjct: 386 REKAGAQ 392



>gi|20532295|sp|Q9UIW0|VAX2_HUMAN   Ventral anterior homeobox 2
          Length = 290

 Score = 57.4 bits (137), Expect = 5e-09
 Identities = 30/65 (46%), Positives = 40/65 (61%), Gaps = 3/65 (4%)

Query: 207 RKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKINK 266
           ++ R  +T  Q   LE EF    Y+    R E+AR LNL+E QVK+WFQNRR K K   K
Sbjct: 103 KRTRTSFTAEQLYRLEMEFQRCQYVVGRERTELARQLNLSETQVKVWFQNRRTKQK---K 159

Query: 267 DRAKD 271
           D+++D
Sbjct: 160 DQSRD 164



>gi|14917010|sp|Q05925|HME1_HUMAN   Homeobox protein engrailed-1 (Hu-En-1)
          Length = 392

 Score = 57.4 bits (137), Expect = 5e-09
 Identities = 26/60 (43%), Positives = 38/60 (63%)

Query: 204 RSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKK 263
           +  ++ R  +T  Q   L+ EF  N Y+T  RR  +A+ L+L E Q+KIWFQN+R K+KK
Sbjct: 301 KEDKRPRTAFTAEQLQRLKAEFQANRYITEQRRQTLAQELSLNESQIKIWFQNKRAKIKK 360



>gi|14194481|sp|Q9HBU1|BARX1_HUMAN   Homeobox protein BarH-like 1
          Length = 225

 Score = 56.2 bits (134), Expect = 1e-08
 Identities = 29/74 (39%), Positives = 42/74 (56%)

Query: 191 IDPNNPAANWLHARSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQV 250
           ++   P      A+  R+ R  +T+ Q + LEK F    YL+   R ++A  L L++ QV
Sbjct: 98  LEAAGPGEPGTKAKKGRRSRTVFTELQLMGLEKRFEKQKYLSTPDRIDLAESLGLSQLQV 157

Query: 251 KIWFQNRRMKMKKI 264
           K W+QNRRMK KKI
Sbjct: 158 KTWYQNRRMKWKKI 171



>gi|3024482|sp|P78337|PITX1_HUMAN   Pituitary homeobox 1 (Hindlimb expressed homeobox protein backfoot)
          Length = 314

 Score = 55.8 bits (133), Expect = 1e-08
 Identities = 38/115 (33%), Positives = 58/115 (50%), Gaps = 11/115 (9%)

Query: 168 KQPSEGAFSENN----AENESGGD-KPPIDPN------NPAANWLHARSTRKKRCPYTKH 216
           ++P E + SE++     E E GG+ K P D          A +    +  R++R  +T  
Sbjct: 40  REPLENSASESSDTELPEKERGGEPKGPEDSGAGGTGCGGADDPAKKKKQRRQRTHFTSQ 99

Query: 217 QTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKINKDRAKD 271
           Q  ELE  F  N Y     R E+A   NLTE +V++WF+NRR K +K  +++  D
Sbjct: 100 QLQELEATFQRNRYPDMSMREEIAVWTNLTEPRVRVWFKNRRAKWRKRERNQQLD 154



>gi|20532396|sp|O43763|TLX2_HUMAN   T-cell leukemia homeobox protein 2 (Homeobox protein Hox-11L1)
           (Neural crest homeobox protein)
          Length = 284

 Score = 55.5 bits (132), Expect = 2e-08
 Identities = 26/66 (39%), Positives = 39/66 (59%)

Query: 207 RKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKINK 266
           +K R  +++ Q LELE+ FL   YL    R  +A+ L +T+ QVK WFQNRR K ++   
Sbjct: 158 KKPRTSFSRSQVLELERRFLRQKYLASAERAALAKALRMTDAQVKTWFQNRRTKWRRQTA 217

Query: 267 DRAKDE 272
           +  + E
Sbjct: 218 EEREAE 223



>gi|6016210|sp|P78367|NK32_HUMAN   Homeobox protein Nkx-3.2 (Bagpipe homeobox protein homolog 1)
          Length = 333

 Score = 54.7 bits (130), Expect = 3e-08
 Identities = 26/57 (45%), Positives = 35/57 (61%)

Query: 207 RKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKK 263
           ++ R  ++  Q  ELE+ F    YL+   R ++A  L LTE QVKIWFQNRR K K+
Sbjct: 207 KRSRAAFSHAQVFELERRFNHQRYLSGPERADLAASLKLTETQVKIWFQNRRYKTKR 263



>gi|19862512|sp|Q04743|EMX2_HUMAN   Homeobox protein EMX2 (Empty spiracles homolog 2) (Empty
           spiracles-like protein 2)
          Length = 252

 Score = 54.7 bits (130), Expect = 3e-08
 Identities = 30/72 (41%), Positives = 42/72 (58%), Gaps = 3/72 (4%)

Query: 195 NPAANWLH---ARSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVK 251
           +P +  LH   AR  ++ R  ++  Q L LE  F  N Y+    R ++A  L+LTE QVK
Sbjct: 140 SPESFLLHNALARKPKRIRTAFSPSQLLRLEHAFEKNHYVVGAERKQLAHSLSLTETQVK 199

Query: 252 IWFQNRRMKMKK 263
           +WFQNRR K K+
Sbjct: 200 VWFQNRRTKFKR 211



>gi|3915680|sp|Q92988|DLX4_HUMAN   Homeobox protein DLX-4 (DLX-7) (DLX-8)
          Length = 347

 Score = 54.7 bits (130), Expect = 3e-08
 Identities = 28/67 (41%), Positives = 37/67 (55%)

Query: 203 ARSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMK 262
           A+  RK R  Y+  Q   L + F    YL    R ++A  L LT+ QVKIWFQN+R K K
Sbjct: 222 AKKLRKPRTIYSSLQLQHLNQRFQHTQYLALPERAQLAAQLGLTQTQVKIWFQNKRSKYK 281

Query: 263 KINKDRA 269
           K+ K  +
Sbjct: 282 KLLKQNS 288



>gi|6093723|sp|O75364|PITX3_HUMAN   Pituitary homeobox 3 (Homeobox protein PITX3)
          Length = 302

 Score = 53.9 bits (128), Expect = 6e-08
 Identities = 36/112 (32%), Positives = 54/112 (48%), Gaps = 8/112 (7%)

Query: 152 LSLTDYACGSPPVDREKQPSEGAFSENNAENESGGDKPPIDPNNPAANWLHARSTRKKRC 211
           LSL+D     P +     P  G   + ++++E      P    +P    L  +  R++R 
Sbjct: 16  LSLSDAGTPHPQL-----PEHGCKGQEHSDSEKASASLP--GGSPEDGSLKKKQ-RRQRT 67

Query: 212 PYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKK 263
            +T  Q  ELE  F  N Y     R E+A   NLTE +V++WF+NRR K +K
Sbjct: 68  HFTSQQLQELEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRK 119



>gi|2833256|sp|Q14774|HLX1_HUMAN   Homeobox protein HLX1 (Homeobox protein HB24)
          Length = 488

 Score = 53.5 bits (127), Expect = 7e-08
 Identities = 26/71 (36%), Positives = 41/71 (57%)

Query: 202 HARSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKM 261
           + R     R  ++  Q   LEK F    Y+T+  R ++A +L LT+ QVK+WFQNRRMK 
Sbjct: 272 YKRKRSWSRAVFSNLQRKGLEKRFEIQKYVTKPDRKQLAAMLGLTDAQVKVWFQNRRMKW 331

Query: 262 KKINKDRAKDE 272
           +   + +A+ +
Sbjct: 332 RHSKEAQAQKD 342



>gi|399982|sp|P31314|TLX1_HUMAN   T-cell leukemia homeobox protein 1 (Homeobox protein Hox-11) (TCL-3
           proto-oncogene)
          Length = 330

 Score = 53.1 bits (126), Expect = 9e-08
 Identities = 44/162 (27%), Positives = 71/162 (43%), Gaps = 24/162 (14%)

Query: 117 GALSFAGL---PSSRPYG---IKPEPLSARRGDCPTLDTHTLSLTDYACGSPPVDREKQP 170
           GALS AG+   P+ RP       P+PL+      P++              P ++  ++ 
Sbjct: 124 GALSAAGVIRVPAHRPLAGAVAHPQPLATGLPTVPSVPAMPGVNNLTGLTFPWMESNRRY 183

Query: 171 SEGAFSENNAENESGGDKPPIDPNNPAANWLHARSTRKKRCPYTKHQTLELEKEFLFNMY 230
           ++  F+ +  +N +    PP                +K R  +T+ Q  ELEK F    Y
Sbjct: 184 TKDRFTGHPYQNRT----PP--------------KKKKPRTSFTRLQICELEKRFHRQKY 225

Query: 231 LTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKINKDRAKDE 272
           L    R  +A+ L +T+ QVK WFQNRR K ++   +  + E
Sbjct: 226 LASAERAALAKALKMTDAQVKTWFQNRRTKWRRQTAEEREAE 267



>gi|38605720|sp|P56177|DLX1_HUMAN   Homeobox protein DLX-1
          Length = 255

 Score = 53.1 bits (126), Expect = 9e-08
 Identities = 28/63 (44%), Positives = 34/63 (53%)

Query: 204 RSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKK 263
           +  RK R  Y   Q   L + F    YL    R E+A  L LT+ QVKIWFQN+R K KK
Sbjct: 126 KKIRKPRTIYCSLQLQALNRRFQQTQYLALPERAELAASLGLTQTQVKIWFQNKRSKFKK 185

Query: 264 INK 266
           + K
Sbjct: 186 LMK 188



>gi|57015304|sp|Q04741|EMX1_HUMAN   Homeobox protein EMX1 (Empty spiracles homolog 1) (Empty
           spiracles-like protein 1)
          Length = 257

 Score = 52.8 bits (125), Expect = 1e-07
 Identities = 26/61 (42%), Positives = 38/61 (62%)

Query: 203 ARSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMK 262
           AR  ++ R  ++  Q L LE+ F  N Y+    R ++A  L+L+E QVK+WFQNRR K K
Sbjct: 156 ARKPKRIRTAFSPSQLLRLERAFEKNHYVVGAERKQLAGSLSLSETQVKVWFQNRRTKYK 215

Query: 263 K 263
           +
Sbjct: 216 R 216



>gi|12644330|sp|P56179|DLX6_HUMAN   Homeobox protein DLX-6
          Length = 175

 Score = 52.4 bits (124), Expect = 2e-07
 Identities = 28/63 (44%), Positives = 34/63 (53%)

Query: 204 RSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKK 263
           +  RK R  Y+  Q   L   F    YL    R E+A  L LT+ QVKIWFQN+R K KK
Sbjct: 47  KKIRKPRTIYSSLQLQALNHRFQQTQYLALPERAELAASLGLTQTQVKIWFQNKRSKFKK 106

Query: 264 INK 266
           + K
Sbjct: 107 LLK 109



>gi|6174907|sp|Q99697|PITX2_HUMAN   Pituitary homeobox 2 (RIEG bicoid-related homeobox transcription
           factor) (Solurshin) (ALL1 responsive protein ARP1)
          Length = 317

 Score = 52.4 bits (124), Expect = 2e-07
 Identities = 28/91 (30%), Positives = 45/91 (49%), Gaps = 4/91 (4%)

Query: 178 NNAENESGGDKPPIDPNNPAANWLHARSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRY 237
           N  +    G    +   +P+      +  R++R  +T  Q  ELE  F  N Y     R 
Sbjct: 61  NEKDKSQQGKNEDVGAEDPSKK----KRQRRQRTHFTSQQLQELEATFQRNRYPDMSTRE 116

Query: 238 EVARLLNLTERQVKIWFQNRRMKMKKINKDR 268
           E+A   NLTE +V++WF+NRR K +K  +++
Sbjct: 117 EIAVWTNLTEARVRVWFKNRRAKWRKRERNQ 147



>gi|12644475|sp|Q99811|PRRX2_HUMAN   Paired mesoderm homeobox protein 2 (PRX-2) (Paired related homeobox
           protein 2)
          Length = 253

 Score = 52.4 bits (124), Expect = 2e-07
 Identities = 44/145 (30%), Positives = 62/145 (42%), Gaps = 13/145 (8%)

Query: 131 GIKPEPLSARRGDCPTLD-----THTLSLTDYACGSPPVDR---EKQPSEGAFSENNAEN 182
           G  P P +   GDC         +H L L + A       R     +  EGA  E +   
Sbjct: 18  GPPPPPPALGPGDCAQARKNFSVSHLLDLEEVAAAGRLAARPGARAEAREGAAREPSG-G 76

Query: 183 ESGGDKPPIDPNNPAANWLHARSTRKK----RCPYTKHQTLELEKEFLFNMYLTRDRRYE 238
            SG +  P D   P+     A   +KK    R  +   Q   LE+ F    Y     R E
Sbjct: 77  SSGSEAAPQDGECPSPGRGSAAKRKKKQRRNRTTFNSSQLQALERVFERTHYPDAFVREE 136

Query: 239 VARLLNLTERQVKIWFQNRRMKMKK 263
           +AR +NL+E +V++WFQNRR K ++
Sbjct: 137 LARRVNLSEARVQVWFQNRRAKFRR 161



>gi|12230168|sp|Q9UBX0|HESX1_HUMAN   Homeobox expressed in ES cells 1 (Homeobox protein ANF) (hAnf)
          Length = 185

 Score = 52.0 bits (123), Expect = 2e-07
 Identities = 25/61 (40%), Positives = 40/61 (65%)

Query: 207 RKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKINK 266
           R+ R  +T++Q   LE  F  N Y   D R ++A+ LNL E +++IWFQNRR K+K+ ++
Sbjct: 109 RRPRTAFTQNQIEVLENVFRVNCYPGIDIREDLAQKLNLEEDRIQIWFQNRRAKLKRSHR 168

Query: 267 D 267
           +
Sbjct: 169 E 169



>gi|25009572|sp|Q9NZR4|VSX1_HUMAN   Visual system homeobox 1 (Transcription factor VSX1) (Retinal inner
           nuclear layer homeobox protein) (Homeodomain protein
           RINX)
          Length = 365

 Score = 51.2 bits (121), Expect = 4e-07
 Identities = 42/138 (30%), Positives = 60/138 (43%), Gaps = 2/138 (1%)

Query: 131 GIKPEPLSARRGDCPTL-DTHTLSLTDYACGSPPVDREKQPSEGAFSENNAENESGGDKP 189
           G   +P +A R  C  L D   L        +P       P+ G    +++ + S  D  
Sbjct: 87  GFGTQPPAAARAPCLLLADVPFLPPRGPEPAAPLAPSRPPPALGRQKRSDSVSTSDEDSQ 146

Query: 190 PIDPNN-PAANWLHARSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTER 248
             D N+  A+  L  R  R+ R  +T HQ  ELEK F    Y     R  +A    L E 
Sbjct: 147 SEDRNDLKASPTLGKRKKRRHRTVFTAHQLEELEKAFSEAHYPDVYAREMLAVKTELPED 206

Query: 249 QVKIWFQNRRMKMKKINK 266
           ++++WFQNRR K +K  K
Sbjct: 207 RIQVWFQNRRAKWRKREK 224



>gi|6174916|sp|P54821|PRRX1_HUMAN   Paired mesoderm homeobox protein 1 (PRX-1) (Paired related homeobox
           protein 1) (Homeobox protein PHOX1)
          Length = 245

 Score = 50.8 bits (120), Expect = 5e-07
 Identities = 28/80 (35%), Positives = 41/80 (51%)

Query: 184 SGGDKPPIDPNNPAANWLHARSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLL 243
           SG D P  D +   +     R  R+ R  +   Q   LE+ F    Y     R ++AR +
Sbjct: 72  SGSDTPQQDNDQLNSEEKKKRKQRRNRTTFNSSQLQALERVFERTHYPDAFVREDLARRV 131

Query: 244 NLTERQVKIWFQNRRMKMKK 263
           NLTE +V++WFQNRR K ++
Sbjct: 132 NLTEARVQVWFQNRRAKFRR 151



>gi|23831508|sp|O43711|TLX3_HUMAN   T-cell leukemia homeobox protein 3 (Homeobox protein Hox-11L2)
          Length = 291

 Score = 50.1 bits (118), Expect = 8e-07
 Identities = 24/57 (42%), Positives = 34/57 (59%)

Query: 207 RKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKK 263
           +K R  +++ Q  ELEK F    YL    R  +A+ L +T+ QVK WFQNRR K ++
Sbjct: 167 KKPRTSFSRVQICELEKRFHRQKYLASAERAALAKSLKMTDAQVKTWFQNRRTKWRR 223



>gi|28202257|sp|P14859|PO2F1_HUMAN   POU domain, class 2, transcription factor 1 (Octamer-binding
           transcription factor 1) (Oct-1) (OTF-1) (NF-A1)
          Length = 743

 Score = 49.7 bits (117), Expect = 1e-06
 Identities = 33/90 (36%), Positives = 45/90 (50%), Gaps = 4/90 (4%)

Query: 178 NNAENESGGDK--PPIDPNNPAANWLHARSTRKKRCPYTKHQTLELEKEFLFNMYLTRDR 235
           N+AEN S       P   N+P    L  R  RKKR     +  + LEK FL N   T + 
Sbjct: 351 NDAENLSSDSSLSSPSALNSPGIEGLSRR--RKKRTSIETNIRVALEKSFLENQKPTSEE 408

Query: 236 RYEVARLLNLTERQVKIWFQNRRMKMKKIN 265
              +A  LN+ +  +++WF NRR K K+IN
Sbjct: 409 ITMIADQLNMEKEVIRVWFCNRRQKEKRIN 438



>gi|48428084|sp|Q8N693|ESX1L_HUMAN   Extraembryonic, spermatogenesis, homeobox 1-like protein
          Length = 406

 Score = 48.9 bits (115), Expect = 2e-06
 Identities = 37/109 (33%), Positives = 51/109 (46%), Gaps = 8/109 (7%)

Query: 162 PPVDR-EKQPSEGAFSENNAENESG------GDKPPIDPNNPAANWLHARSTRKKRCPYT 214
           PP+ + E+Q  E    E   E E        G +P   P          R  R++R  +T
Sbjct: 89  PPLTKPEQQQEEPPLLELKQEQEEPPQTTVEGPQPAEGPQTAEGPQPPERK-RRRRTAFT 147

Query: 215 KHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKK 263
           + Q  ELE  F  + Y     R  +A  LNLTE +V++WFQNRR K K+
Sbjct: 148 QFQLQELENFFDESQYPDVVARERLAARLNLTEDRVQVWFQNRRAKWKR 196



>gi|8134640|sp|O14813|PHX2A_HUMAN   Paired mesoderm homeobox protein 2A (Paired-like homeobox 2A)
           (Aristaless homeobox protein homolog) (ARIX1 homeodomain
           protein)
          Length = 284

 Score = 48.9 bits (115), Expect = 2e-06
 Identities = 28/69 (40%), Positives = 39/69 (56%), Gaps = 1/69 (1%)

Query: 196 PAANWLHA-RSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWF 254
           P  + LH  R  R+ R  +T  Q  ELE+ F    Y     R E+A  ++LTE +V++WF
Sbjct: 79  PEPSGLHEKRKQRRIRTTFTSAQLKELERVFAETHYPDIYTREELALKIDLTEARVQVWF 138

Query: 255 QNRRMKMKK 263
           QNRR K +K
Sbjct: 139 QNRRAKFRK 147



>gi|13626112|sp|Q9H161|ALX4_HUMAN   Homeobox protein aristaless-like 4
          Length = 411

 Score = 48.5 bits (114), Expect = 2e-06
 Identities = 48/181 (26%), Positives = 72/181 (39%), Gaps = 30/181 (16%)

Query: 113 EPTPGALSFAGLPSSRPYGIKPEP-------LSARRGDCPTLDTHTLSLTD--------- 156
           +P P        P  +P   +P+P       L  +RG C T    +L L +         
Sbjct: 91  QPQPSTPQPQPSPQPQPQQQQPQPQPPAQPHLYLQRGACKTPPDGSLKLQEGSSGHSAAL 150

Query: 157 ----YACGSPPVDREKQPSEGAFSENNA--ENESGGDKPPID--------PNNPAANWLH 202
               YA  S   + E  P       +++    +  G K P D        P   A +  +
Sbjct: 151 QVPCYAKESSLGEPELPPDSDTVGMDSSYLSVKEAGVKGPQDRASSDLPSPLEKADSESN 210

Query: 203 ARSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMK 262
               R+ R  +T +Q  ELEK F    Y     R ++A   +LTE +V++WFQNRR K +
Sbjct: 211 KGKKRRNRTTFTSYQLEELEKVFQKTHYPDVYAREQLAMRTDLTEARVQVWFQNRRAKWR 270

Query: 263 K 263
           K
Sbjct: 271 K 271



>gi|3287764|sp|O43186|CRX_HUMAN   Cone-rod homeobox protein
          Length = 299

 Score = 47.8 bits (112), Expect = 4e-06
 Identities = 28/85 (32%), Positives = 46/85 (54%), Gaps = 1/85 (1%)

Query: 189 PPIDPNNPAANWLHA-RSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTE 247
           P +D  + A  +  A R  R++R  +T+ Q  ELE  F    Y     R EVA  +NL E
Sbjct: 21  PSVDLMHQAVPYPSAPRKQRRERTTFTRSQLEELEALFAKTQYPDVYAREEVALKINLPE 80

Query: 248 RQVKIWFQNRRMKMKKINKDRAKDE 272
            +V++WF+NRR K ++  + + + +
Sbjct: 81  SRVQVWFKNRRAKCRQQRQQQKQQQ 105



>gi|7531125|sp|P56915|GSC_HUMAN   Homeobox protein goosecoid
          Length = 252

 Score = 47.8 bits (112), Expect = 4e-06
 Identities = 24/73 (32%), Positives = 40/73 (54%)

Query: 199 NWLHARSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRR 258
           N LH R  R+ R  +T  Q   LE  F    Y     R ++AR ++L E +V++WF+NRR
Sbjct: 148 NQLHCRRKRRHRTIFTDEQLEALENLFQETKYPDVGTREQLARKVHLREEKVEVWFKNRR 207

Query: 259 MKMKKINKDRAKD 271
            K ++  +  +++
Sbjct: 208 AKWRRQKRSSSEE 220



>gi|8134644|sp|Q99453|PHX2B_HUMAN   Paired mesoderm homeobox protein 2B (Paired-like homeobox 2B)
           (PHOX2B homeodomain protein) (Neuroblastoma Phox)
           (NBPhox)
          Length = 314

 Score = 47.8 bits (112), Expect = 4e-06
 Identities = 25/60 (41%), Positives = 35/60 (58%)

Query: 204 RSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKK 263
           R  R+ R  +T  Q  ELE+ F    Y     R E+A  ++LTE +V++WFQNRR K +K
Sbjct: 96  RKQRRIRTTFTSAQLKELERVFAETHYPDIYTREELALKIDLTEARVQVWFQNRRAKFRK 155



>gi|6016211|sp|P78426|NK61_HUMAN   Homeobox protein Nkx-6.1
          Length = 367

 Score = 47.0 bits (110), Expect = 7e-06
 Identities = 24/54 (44%), Positives = 30/54 (55%)

Query: 210 RCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKK 263
           R  ++  Q   LEK F    YL    R  +A  L +TE QVK+WFQNRR K +K
Sbjct: 240 RPTFSGQQIFALEKTFEQTKYLAGPERARLAYSLGMTESQVKVWFQNRRTKWRK 293



>gi|17374365|sp|P58304|CHX10_HUMAN   Homeobox protein CHX10 (Ceh-10 homeodomain containing homolog)
          Length = 361

 Score = 46.6 bits (109), Expect = 9e-06
 Identities = 35/119 (29%), Positives = 54/119 (45%), Gaps = 9/119 (7%)

Query: 148 DTHTLSLTDYACGSPPVDREKQPSEGAFSENNAENESGGDKPPIDPNNPAANWLHARSTR 207
           D  ++ L      S P+D  +  S      +++E+ S  D+     +  A N    R  R
Sbjct: 99  DPQSVHLQPLGRASGPLDTSQTAS------SDSEDVSSSDRKM---SKSALNQTKKRKKR 149

Query: 208 KKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKINK 266
           + R  +T +Q  ELEK F    Y     R  +A    L E ++++WFQNRR K +K  K
Sbjct: 150 RHRTIFTSYQLEELEKAFNEAHYPDVYAREMLAMKTELPEDRIQVWFQNRRAKWRKREK 208



>gi|8247951|sp|P23759|PAX7_HUMAN   Paired box protein Pax-7 (HUP1)
          Length = 520

 Score = 46.2 bits (108), Expect = 1e-05
 Identities = 30/98 (30%), Positives = 45/98 (45%), Gaps = 6/98 (6%)

Query: 166 REKQPSEGAFSENNAENESGGDKPPIDPNNPAANWLHARSTRKKRCPYTKHQTLELEKEF 225
           + K   +G   +     + G D    +P+ P       R  R+ R  +T  Q  ELEK F
Sbjct: 183 KAKHSIDGILGDKGNRLDEGSDVES-EPDLPLK-----RKQRRSRTTFTAEQLEELEKAF 236

Query: 226 LFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKK 263
               Y     R E+A+   LTE +V++WF NRR + +K
Sbjct: 237 ERTHYPDIYTREELAQRTKLTEARVQVWFSNRRARWRK 274



>gi|1172022|sp|P23760|PAX3_HUMAN   Paired box protein Pax-3 (HUP2)
          Length = 479

 Score = 46.2 bits (108), Expect = 1e-05
 Identities = 31/99 (31%), Positives = 46/99 (46%), Gaps = 6/99 (6%)

Query: 166 REKQPSEGAFSEN-NAENESGGDKPPIDPNNPAANWLHARSTRKKRCPYTKHQTLELEKE 224
           + K   +G  SE  +A     G     +P+ P       R  R+ R  +T  Q  ELE+ 
Sbjct: 183 KAKHSIDGILSERASAPQSDEGSDIDSEPDLPLK-----RKQRRSRTTFTAEQLEELERA 237

Query: 225 FLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKK 263
           F    Y     R E+A+   LTE +V++WF NRR + +K
Sbjct: 238 FERTHYPDIYTREELAQRAKLTEARVQVWFSNRRARWRK 276



>gi|17380297|sp|Q9Y2V3|RX_HUMAN   Retinal homeobox protein Rx (Retina and anterior neural fold
           homeobox protein)
          Length = 346

 Score = 45.8 bits (107), Expect = 2e-05
 Identities = 24/60 (40%), Positives = 36/60 (60%)

Query: 207 RKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKINK 266
           R+ R  +T +Q  ELE+ F  + Y     R E+A  +NL E +V++WFQNRR K ++  K
Sbjct: 137 RRNRTTFTTYQLHELERAFEKSHYPDVYSREELAGKVNLPEVRVQVWFQNRRAKWRRQEK 196



>gi|37537960|sp|Q8NHV9|PEPP1_HUMAN   Paired-like homeobox protein PEPP-1 (Ovary-, testis- and
           epididymis-expressed gene protein)
          Length = 184

 Score = 45.4 bits (106), Expect = 2e-05
 Identities = 27/100 (27%), Positives = 44/100 (44%), Gaps = 5/100 (5%)

Query: 173 GAFSENNAENESGGDKPPIDPNNPAANWLHA-----RSTRKKRCPYTKHQTLELEKEFLF 227
           G   E    N+    +P   P  PA   +          R +R  +T  Q  ELE  F  
Sbjct: 65  GMIPEGGGGNQEPRQQPQPPPEEPAQAAMEGPQPENMQPRTRRTKFTLLQVEELESVFRH 124

Query: 228 NMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKINKD 267
             Y     R E+A  L +TE +V++WF+N+R + ++  ++
Sbjct: 125 TQYPDVPTRRELAENLGVTEDKVRVWFKNKRARCRRHQRE 164



>gi|13626107|sp|O95076|ALX3_HUMAN   Homeobox protein aristaless-like 3 (Proline-rich transcription
           factor ALX3)
          Length = 343

 Score = 45.4 bits (106), Expect = 2e-05
 Identities = 27/76 (35%), Positives = 41/76 (53%), Gaps = 2/76 (2%)

Query: 190 PIDPNNPAANWLHARSTRKKR--CPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTE 247
           P+ P  P +  L    ++K+R    ++  Q  ELEK F    Y     R ++A   +LTE
Sbjct: 135 PLSPGLPDSMELAKNKSKKRRNRTTFSTFQLEELEKVFQKTHYPDVYAREQLALRTDLTE 194

Query: 248 RQVKIWFQNRRMKMKK 263
            +V++WFQNRR K +K
Sbjct: 195 ARVQVWFQNRRAKWRK 210



>gi|123402|sp|P09086|PO2F2_HUMAN   POU domain, class 2, transcription factor 2 (Octamer-binding
           transcription factor 2) (Oct-2) (OTF-2)
           (Lymphoid-restricted immunoglobulin octamer binding
           protein NF-A2)
          Length = 479

 Score = 45.1 bits (105), Expect = 3e-05
 Identities = 31/97 (31%), Positives = 46/97 (47%), Gaps = 15/97 (15%)

Query: 178 NNAENESGGDKPPIDPNNPAANWLHARST---------RKKRCPYTKHQTLELEKEFLFN 228
           N+AE  S      +D + P+ N L + S          RKKR     +    LEK FL N
Sbjct: 266 NDAETMS------VDSSLPSPNQLSSPSLGFDGLPGRRRKKRTSIETNVRFALEKSFLAN 319

Query: 229 MYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKIN 265
              T +    +A  L++ +  +++WF NRR K K+IN
Sbjct: 320 QKPTSEEILLIAEQLHMEKEVIRVWFCNRRQKEKRIN 356



>gi|3914276|sp|O43316|PAX4_HUMAN   Paired box protein Pax-4
          Length = 350

 Score = 44.7 bits (104), Expect = 3e-05
 Identities = 45/181 (24%), Positives = 69/181 (38%), Gaps = 28/181 (15%)

Query: 105 GRYMRSWLEPTPGALSFAGLPSSRPYGIKPEPLSAR----RGDCPTLDTHTLSLTDYACG 160
           GRY R+      G L   G+  S+P    P P+ AR    +G+CP L      +    C 
Sbjct: 59  GRYYRT------GVLEPKGIGGSKPRLATP-PVVARIAQLKGECPAL--FAWEIQRQLCA 109

Query: 161 SPPVDREKQPSEGAFSENNAENESGGDKPPIDPNNPAA---------------NWLHARS 205
                ++K PS  + +      +     P     +PA                   H  +
Sbjct: 110 EGLCTQDKTPSVSSINRVLRALQEDQGLPCTRLRSPAVLAPAVLTPHSGSETPRGTHPGT 169

Query: 206 TRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKIN 265
             + R  ++  Q   LEKEF    Y     R ++A   +L E  V++WF NRR K ++  
Sbjct: 170 GHRNRTIFSPSQAEALEKEFQRGQYPDSVARGKLATATSLPEDTVRVWFSNRRAKWRRQE 229

Query: 266 K 266
           K
Sbjct: 230 K 230



>gi|6831676|sp|O15266|SHOX_HUMAN   Short stature homeobox protein (Short stature homeobox containing
           protein) (Pseudoautosomal homeobox containing osteogenic
           protein)
          Length = 292

 Score = 44.3 bits (103), Expect = 4e-05
 Identities = 23/57 (40%), Positives = 34/57 (59%)

Query: 207 RKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKK 263
           R+ R  +T  Q  ELE+ F    Y     R E+++ L L+E +V++WFQNRR K +K
Sbjct: 118 RRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQVWFQNRRAKCRK 174



>gi|417425|sp|P32242|OTX1_HUMAN   Homeobox protein OTX1
          Length = 354

 Score = 44.3 bits (103), Expect = 4e-05
 Identities = 32/97 (32%), Positives = 47/97 (48%), Gaps = 8/97 (8%)

Query: 168 KQPSEGAFSENNAENESGGDKPPIDPNNPAANW-LHARSTRKKRCPYTKHQTLELEKEFL 226
           KQP  G        N  G   P +D  +P+  +    R  R++R  +T+ Q   LE  F 
Sbjct: 6   KQPPYGM-------NGLGLAGPAMDLLHPSVGYPATPRKQRRERTTFTRSQLDVLEALFA 58

Query: 227 FNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKK 263
              Y     R EVA  +NL E +V++WF+NRR K ++
Sbjct: 59  KTRYPDIFMREEVALKINLPESRVQVWFKNRRAKCRQ 95



>gi|6093787|sp|O75360|PROP1_HUMAN   Homeobox protein prophet of Pit-1 (PROP-1) (Pituitary specific
           homeodomain factor)
          Length = 226

 Score = 44.3 bits (103), Expect = 4e-05
 Identities = 26/80 (32%), Positives = 40/80 (50%), Gaps = 2/80 (2%)

Query: 184 SGGDKPPIDPNNPAANWLHARSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLL 243
           +GG +    P        H+R  R+ R  ++  Q  +LE  F  N Y     R  +AR  
Sbjct: 49  AGGGRSRFSPQGGQRGRPHSR--RRHRTTFSPVQLEQLESAFGRNQYPDIWARESLARDT 106

Query: 244 NLTERQVKIWFQNRRMKMKK 263
            L+E ++++WFQNRR K +K
Sbjct: 107 GLSEARIQVWFQNRRAKQRK 126



>gi|18202099|sp|O60902|SHOX2_HUMAN   Short stature homeobox protein 2 (Paired-related homeobox protein
           SHOT) (Homeobox protein Og12X)
          Length = 331

 Score = 44.3 bits (103), Expect = 4e-05
 Identities = 23/57 (40%), Positives = 34/57 (59%)

Query: 207 RKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKK 263
           R+ R  +T  Q  ELE+ F    Y     R E+++ L L+E +V++WFQNRR K +K
Sbjct: 141 RRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQVWFQNRRAKCRK 197



>gi|51702790|sp|P63015|PAX6_MOUSE   Paired box protein Pax-6 (Oculorhombin)
 gi|6174889|sp|P26367|PAX6_HUMAN   Paired box protein Pax-6 (Oculorhombin) (Aniridia, type II protein)
          Length = 422

 Score = 43.9 bits (102), Expect = 6e-05
 Identities = 32/109 (29%), Positives = 48/109 (44%), Gaps = 6/109 (5%)

Query: 160 GSPPVDREKQPSEGAFSENNAENESGGDKPPIDPNNPAANWLHARSTRKKRCPYTKHQTL 219
           G P  D  +Q   G   EN     S G+    D +         R  ++ R  +T+ Q  
Sbjct: 170 GQPTQDGCQQQEGGG--ENTNSISSNGE----DSDEAQMRLQLKRKLQRNRTSFTQEQIE 223

Query: 220 ELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKINKDR 268
            LEKEF    Y     R  +A  ++L E ++++WF NRR K ++  K R
Sbjct: 224 ALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEKLR 272



>gi|18202510|sp|Q15911|ATBF1_HUMAN   Alpha-fetoprotein enhancer binding protein (AT motif-binding factor)
            (AT-binding transcription factor 1)
          Length = 3703

 Score = 43.9 bits (102), Expect = 6e-05
 Identities = 28/87 (32%), Positives = 41/87 (47%), Gaps = 4/87 (4%)

Query: 187  DKPPIDPNNPAANWLHARSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLT 246
            D  P  P  P   +  ++  R  R  +T +Q   L+  F  N Y   D   +++ LLNL 
Sbjct: 2225 DSRPPSPEPPKQEYWGSK--RSSRTRFTDYQLRVLQDFFDANAYPKDDEFEQLSNLLNLP 2282

Query: 247  ERQVKIWFQNRRMKMKK--INKDRAKD 271
             R + +WFQN R K +K   N+   KD
Sbjct: 2283 TRVIVVWFQNARQKARKNYENQGEGKD 2309



 Score = 35.8 bits (81), Expect = 0.016
 Identities = 27/98 (27%), Positives = 45/98 (45%), Gaps = 16/98 (16%)

Query: 168  KQPSEGAFSENNAENESG--GDKPPIDPNNPAANWLHARSTRKKRCPYTKHQTLELEKEF 225
            K+  E   S +  EN+SG  G++P  D              ++ R   T  Q   L +++
Sbjct: 2615 KRKLEEKASASPGENDSGTGGEEPQRD--------------KRLRTTITPEQLEILYQKY 2660

Query: 226  LFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKK 263
            L +   TR     +A  + L +R V++WFQN R + +K
Sbjct: 2661 LLDSNPTRKMLDHIAHEVGLKKRVVQVWFQNTRARERK 2698



 Score = 30.0 bits (66), Expect = 0.86
 Identities = 17/64 (26%), Positives = 31/64 (48%)

Query: 204  RSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKK 263
            +  ++ R   T  Q   L + F  N   + ++  E+A    L ++ +K WF+N   K ++
Sbjct: 2143 QQNKRPRTRITDDQLRVLRQYFDINNSPSEEQIKEMADKSGLPQKVIKHWFRNTLFKERQ 2202

Query: 264  INKD 267
             NKD
Sbjct: 2203 RNKD 2206



 Score = 29.6 bits (65), Expect = 1.1
 Identities = 13/28 (46%), Positives = 17/28 (60%)

Query: 243  LNLTERQVKIWFQNRRMKMKKINKDRAK 270
            + L +R V++WFQN R K KK     AK
Sbjct: 2983 IGLPKRVVQVWFQNARAKEKKSKLSMAK 3010



>gi|37537987|sp|Q9BQY4|PEP2_HUMAN   Paired-like homeobox protein PEPP-2 (Testis homeobox gene 1)
          Length = 288

 Score = 43.1 bits (100), Expect = 1e-04
 Identities = 29/101 (28%), Positives = 46/101 (45%), Gaps = 22/101 (21%)

Query: 176 SENNAENESGGDKPP-------------IDPNNPAANWLHARSTRKKRCPYTKHQTLELE 222
           S+ N E+    +K P             ++P N     +HA         +T  Q  ELE
Sbjct: 100 SDGNVEDSDQSEKEPGQQYSRPQGAVGGLEPGNAQQPNVHA---------FTPLQLQELE 150

Query: 223 KEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKK 263
           + F    + +   R  +AR +N+TE  V+IWF+NRR K ++
Sbjct: 151 RIFQREQFPSEFLRRRLARSMNVTELAVQIWFENRRAKWRR 191



>gi|3023579|sp|Q15699|CRT1_HUMAN   Cartilage homeoprotein 1 (CART-1)
          Length = 326

 Score = 43.1 bits (100), Expect = 1e-04
 Identities = 24/57 (42%), Positives = 32/57 (56%)

Query: 207 RKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKK 263
           R+ R  +T  Q  ELEK F    Y     R ++A    LTE +V++WFQNRR K +K
Sbjct: 133 RRHRTTFTSLQLEELEKVFQKTHYPDVYVREQLALRTELTEARVQVWFQNRRAKWRK 189



>gi|417427|sp|P32243|OTX2_HUMAN   Homeobox protein OTX2
          Length = 289

 Score = 42.7 bits (99), Expect = 1e-04
 Identities = 23/60 (38%), Positives = 34/60 (56%)

Query: 204 RSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKK 263
           R  R++R  +T+ Q   LE  F    Y     R EVA  +NL E +V++WF+NRR K ++
Sbjct: 36  RKQRRERTTFTRAQLDVLEALFAKTRYPDIFMREEVALKINLPESRVQVWFKNRRAKCRQ 95



>gi|6685480|sp|O15499|GSCL_HUMAN   Homeobox protein goosecoid-like (GSC-2)
          Length = 205

 Score = 42.4 bits (98), Expect = 2e-04
 Identities = 21/59 (35%), Positives = 33/59 (55%)

Query: 204 RSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMK 262
           R TR+ R  +++ Q   LE  F+ N Y     R  +A  + L E +V++WF+NRR K +
Sbjct: 124 RRTRRHRTIFSEEQLQALEALFVQNQYPDVSTRERLAGRIRLREERVEVWFKNRRAKWR 182



>gi|28201861|sp|Q9UKI9|PO2F3_HUMAN   POU domain, class 2, transcription factor 3 (Octamer-binding
           transcription factor 11) (Oct-11) (Transcription factor
           Skn-1) (PLA-1 protein)
          Length = 436

 Score = 42.4 bits (98), Expect = 2e-04
 Identities = 27/88 (30%), Positives = 43/88 (48%), Gaps = 1/88 (1%)

Query: 178 NNAENESGGDKPPIDPNNPAANWLHARSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRY 237
           N+AE+           + P+ + +  R  RKKR     +  L LEK F  N   + +   
Sbjct: 254 NDAESSPSDPSVSTPSSYPSLSEVFGRK-RKKRTSIETNIRLTLEKRFQDNPKPSSEEIS 312

Query: 238 EVARLLNLTERQVKIWFQNRRMKMKKIN 265
            +A  L++ +  V++WF NRR K K+IN
Sbjct: 313 MIAEQLSMEKEVVRVWFCNRRQKEKRIN 340



>gi|28380240|sp|Q9C0A1|ZFHX2_HUMAN   Zinc finger homeobox protein 2
          Length = 1427

 Score = 42.0 bits (97), Expect = 2e-04
 Identities = 32/125 (25%), Positives = 48/125 (38%), Gaps = 23/125 (18%)

Query: 162 PPVDREKQPSEGAFSENNA---------ENESGGDKPPIDPNNPAANW------------ 200
           PP+    +P +G+               E E+GG + P + +    +W            
Sbjct: 383 PPLAEPPKPPDGSLDSPVPHLGPPFLVPEPEAGGTRAPEERSRAGGHWPIEEEESSRGNL 442

Query: 201 --LHARSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRR 258
             L     R  R  +T+ QT  L+  F  + Y        +A LL L  R V +WFQN R
Sbjct: 443 PPLVPAGRRFSRTKFTEFQTQALQSFFETSAYPKDGEVERLASLLGLASRVVVVWFQNAR 502

Query: 259 MKMKK 263
            K +K
Sbjct: 503 QKARK 507



 Score = 31.6 bits (70), Expect = 0.30
 Identities = 28/107 (26%), Positives = 46/107 (42%), Gaps = 25/107 (23%)

Query: 162 PPVDREKQPSEGAFSENNAENESGGDKPPIDPNNPAANWLHARSTRKKRCPYTKHQTLEL 221
           PP+ R+ +  +G+ S   +E   GG+  P                R KR   T    L  
Sbjct: 683 PPLKRKHE--DGSLSPTGSEAGGGGEGEP---------------PRDKRLRTT---ILPE 722

Query: 222 EKEFLFNMYL-----TRDRRYEVARLLNLTERQVKIWFQNRRMKMKK 263
           + E L+  Y+     TR     ++  + L +R V++WFQN R + +K
Sbjct: 723 QLEILYRWYMQDSNPTRKMLDCISEEVGLKKRVVQVWFQNTRARERK 769



 Score = 27.7 bits (60), Expect = 4.3
 Identities = 10/21 (47%), Positives = 15/21 (71%)

Query: 243 LNLTERQVKIWFQNRRMKMKK 263
           + L +R +++WFQN R K KK
Sbjct: 957 IGLPKRVIQVWFQNARAKEKK 977



>gi|8247936|sp|P50458|LHX2_HUMAN   LIM/homeobox protein Lhx2 (Homeobox protein LH-2)
          Length = 406

 Score = 39.3 bits (90), Expect = 0.001
 Identities = 25/100 (25%), Positives = 48/100 (48%), Gaps = 5/100 (5%)

Query: 166 REKQPSEGA--FSENNAENESGGDKPPIDPNNPAANWLHARSTRKKRCPYTKHQTLELEK 223
           + K P  GA   + N A + +  D   +D + P  +   ++ T++ R  +  HQ   ++ 
Sbjct: 227 KRKSPGPGADLAAYNAALSCNENDAEHLDRDQPYPS---SQKTKRMRTSFKHHQLRTMKS 283

Query: 224 EFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKK 263
            F  N         ++A+   LT+R +++WFQN R K ++
Sbjct: 284 YFAINHNPDAKDLKQLAQKTGLTKRVLQVWFQNARAKFRR 323



>gi|8247930|sp|O60663|LMX1B_HUMAN   LIM homeobox transcription factor 1 beta (LIM/homeobox protein
           LMX1B) (LIM-homeobox protein 1.2) (LMX-1.2)
          Length = 379

 Score = 38.9 bits (89), Expect = 0.002
 Identities = 27/100 (27%), Positives = 44/100 (44%), Gaps = 15/100 (15%)

Query: 165 DREKQPSEGAFSENNAENESGGDKPPIDPNNPAANWLHARSTRKKRCPYTKHQTLELEKE 224
           D + +P++G  S++    + G D     P  P          ++ R   T  Q    +  
Sbjct: 170 DGDMKPAKGQGSQSKGSGDDGKD-----PRRP----------KRPRTILTTQQRRAFKAS 214

Query: 225 FLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKI 264
           F  +    R  R  +A    L+ R V++WFQN+R KMKK+
Sbjct: 215 FEVSSKPCRKVRETLAAETGLSVRVVQVWFQNQRAKMKKL 254



>gi|18202938|sp|Q9H2C1|LHX5_HUMAN   LIM/homeobox protein Lhx5
          Length = 402

 Score = 37.7 bits (86), Expect = 0.004
 Identities = 26/89 (29%), Positives = 42/89 (47%), Gaps = 8/89 (8%)

Query: 181 ENESGGDKPPIDPNNPAANWLHARSTRKKRCPYTKHQTLELEK---EFLFNMYLTRDRRY 237
           +N +  DK   +  N   N     S  K+R P T  +  +LE     F      TR  R 
Sbjct: 157 DNSTSSDKETANNENEEQN-----SGTKRRGPRTTIKAKQLETLKAAFAATPKPTRHIRE 211

Query: 238 EVARLLNLTERQVKIWFQNRRMKMKKINK 266
           ++A+   L  R +++WFQNRR K +++ +
Sbjct: 212 QLAQETGLNMRVIQVWFQNRRSKERRMKQ 240



>gi|730281|sp|P40426|PBX3_HUMAN   Pre-B-cell leukemia transcription factor-3 (Homeobox protein PBX3)
          Length = 434

 Score = 37.7 bits (86), Expect = 0.004
 Identities = 21/60 (35%), Positives = 35/60 (58%), Gaps = 3/60 (5%)

Query: 207 RKKRCPYTKHQTLELEKEF---LFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKK 263
           R+KR  ++K  T  L + F   L N Y + + + E+A+  ++T  QV  WF N+R++ KK
Sbjct: 236 RRKRRNFSKQATEILNEYFYSHLSNPYPSEEAKEELAKKCSITVSQVSNWFGNKRIRYKK 295



>gi|1352729|sp|P40425|PBX2_HUMAN   Pre-B-cell leukemia transcription factor-2 (Homeobox protein PBX2)
           (G17 protein)
          Length = 430

 Score = 37.7 bits (86), Expect = 0.004
 Identities = 21/60 (35%), Positives = 34/60 (56%), Gaps = 3/60 (5%)

Query: 207 RKKRCPYTKHQTLELEKEF---LFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKK 263
           R+KR  ++K  T  L + F   L N Y + + + E+A+   +T  QV  WF N+R++ KK
Sbjct: 245 RRKRRNFSKQATEVLNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKK 304



>gi|37999770|sp|Q9BYU1|PBX4_HUMAN   Pre-B-cell leukemia transcription factor-4 (Homeobox protein PBX4)
          Length = 330

 Score = 37.7 bits (86), Expect = 0.004
 Identities = 23/60 (38%), Positives = 34/60 (56%), Gaps = 3/60 (5%)

Query: 207 RKKRCPYTKHQTLELEKEF---LFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKK 263
           R+KR  ++K  T  L + F   L N Y + + + E+AR   LT  QV  WF N+R++ KK
Sbjct: 167 RRKRRNFSKQATEVLNEYFYSHLNNPYPSEEAKEELARKGGLTISQVSNWFGNKRIRYKK 226



>gi|20141754|sp|P41778|PBX1_MOUSE   Pre-B-cell leukemia transcription factor-1 (Homeobox protein PBX1)
 gi|730279|sp|P40424|PBX1_HUMAN   Pre-B-cell leukemia transcription factor-1 (Homeobox protein PBX1)
           (Homeobox protein PRL)
          Length = 430

 Score = 37.0 bits (84), Expect = 0.007
 Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 3/60 (5%)

Query: 207 RKKRCPYTKHQTLELEKEF---LFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKK 263
           R+KR  + K  T  L + F   L N Y + + + E+A+   +T  QV  WF N+R++ KK
Sbjct: 234 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKK 293



>gi|60416412|sp|P48742|LHX1_HUMAN   LIM/homeobox protein Lhx1 (LIM homeobox protein 1) (Homeobox
           protein Lim-1)
          Length = 406

 Score = 36.2 bits (82), Expect = 0.012
 Identities = 27/102 (26%), Positives = 49/102 (48%), Gaps = 8/102 (7%)

Query: 165 DREKQPSEGAFSENNAENESGGDKPPIDPNNPAANWLHARSTRKKRCPYTKHQTLELEKE 224
           D  +  ++ + S N ++ E+G ++   D  N  A     R+T K +      Q   L+  
Sbjct: 147 DPSQDDAKDSESANVSDKEAGSNEN--DDQNLGAKRRGPRTTIKAK------QLETLKAA 198

Query: 225 FLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKINK 266
           F      TR  R ++A+   L  R +++WFQNRR K +++ +
Sbjct: 199 FAATPKPTRHIREQLAQETGLNMRVIQVWFQNRRSKERRMKQ 240



>gi|2495306|sp|Q14863|PO6F1_HUMAN   POU domain, class 6, transcription factor 1 (mPOU homeobox protein)
           (Brain-specific homeobox/POU domain protein 5) (Brain-5)
           (Brn-5 protein)
          Length = 301

 Score = 36.2 bits (82), Expect = 0.012
 Identities = 20/60 (33%), Positives = 28/60 (46%)

Query: 207 RKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKINK 266
           RK+R  +T      L   F  N   T     E+A+ LN     V++WF NRR  +K  +K
Sbjct: 235 RKRRTSFTPQAIEALNAYFEKNPLPTGQEITEIAKELNYDREVVRVWFCNRRQTLKNTSK 294



>gi|12643346|sp|Q9NQ69|LHX9_HUMAN   LIM/homeobox protein Lhx9
          Length = 388

 Score = 36.2 bits (82), Expect = 0.012
 Identities = 16/61 (26%), Positives = 32/61 (52%)

Query: 203 ARSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMK 262
           ++ T++ R  +  HQ   ++  F  N         ++A+   LT+R +++WFQN R K +
Sbjct: 255 SQKTKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQVWFQNARAKFR 314

Query: 263 K 263
           +
Sbjct: 315 R 315



>gi|12643415|sp|Q9UBR4|LHX3_HUMAN   LIM/homeobox protein Lhx3
          Length = 397

 Score = 35.8 bits (81), Expect = 0.016
 Identities = 19/66 (28%), Positives = 33/66 (50%)

Query: 205 STRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKI 264
           + ++ R   T  Q   L+  +  +    R  R +++    L  R V++WFQNRR K K++
Sbjct: 156 TAKRPRTTITAKQLETLKSAYNTSPKPARHVREQLSSETGLDMRVVQVWFQNRRAKEKRL 215

Query: 265 NKDRAK 270
            KD  +
Sbjct: 216 KKDAGR 221



>gi|20138668|sp|Q969G2|LHX4_HUMAN   LIM/homeobox protein Lhx4
          Length = 367

 Score = 35.4 bits (80), Expect = 0.020
 Identities = 19/64 (29%), Positives = 32/64 (50%)

Query: 207 RKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKINK 266
           ++ R   T  Q   L+  +  +    R  R +++    L  R V++WFQNRR K K++ K
Sbjct: 135 KRPRTTITAKQLETLKNAYKNSPKPARHVREQLSSETGLDMRVVQVWFQNRRAKEKRLKK 194

Query: 267 DRAK 270
           D  +
Sbjct: 195 DAGR 198



>gi|12644347|sp|P78413|IRX4_HUMAN   Iroquois-class homeodomain protein IRX-4 (Iroquois homeobox protein
           4) (Homeodomain protein IRXA3)
          Length = 519

 Score = 34.7 bits (78), Expect = 0.035
 Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 1/62 (1%)

Query: 206 TRKKRCPYTKHQTLELE-KEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKI 264
           TR+K        TL+   +E   N Y T+  +  +A +  +T  QV  WF N R ++KK 
Sbjct: 144 TRRKNATRETTSTLKAWLQEHRKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKE 203

Query: 265 NK 266
           NK
Sbjct: 204 NK 205



>gi|27923801|sp|Q8TE12|LMX1A_HUMAN   LIM homeobox transcription factor 1 alpha (LIM/homeobox protein
           LMX1A) (LIM-homeobox protein 1.1) (LMX-1.1)
          Length = 382

 Score = 34.3 bits (77), Expect = 0.046
 Identities = 19/66 (28%), Positives = 33/66 (50%)

Query: 207 RKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKINK 266
           ++ R   T  Q    +  F  +    R  R  +A    L+ R V++WFQN+R KMKK+ +
Sbjct: 196 KRPRTILTTQQRRAFKASFEVSSKPCRKVRETLAAETGLSVRVVQVWFQNQRAKMKKLAR 255

Query: 267 DRAKDE 272
            + + +
Sbjct: 256 RQQQQQ 261



>gi|47117873|sp|P78414|IRX1_HUMAN   Iroquois-class homeodomain protein IRX-1 (Iroquois homeobox protein
           1) (Homeodomain protein IRXA1)
          Length = 480

 Score = 33.9 bits (76), Expect = 0.060
 Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 4/49 (8%)

Query: 228 NMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKINK----DRAKDE 272
           N Y T+  +  +A +  +T  QV  WF N R ++KK NK     R+KD+
Sbjct: 152 NPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENKVTWGARSKDQ 200



>gi|47117871|sp|P78411|IRX5_HUMAN   Iroquois-class homeodomain protein IRX-5 (Iroquois homeobox protein
           5) (Homeodomain protein IRXB2) (IRX-2A)
          Length = 482

 Score = 33.9 bits (76), Expect = 0.060
 Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 6/51 (11%)

Query: 228 NMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKINK------DRAKDE 272
           N Y T+  +  +A +  +T  QV  WF N R ++KK NK      +R++DE
Sbjct: 138 NPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENKMTWTPRNRSEDE 188



>gi|28201884|sp|P78424|PO6F2_HUMAN   POU domain, class 6, transcription factor 2 (Retina-derived
           POU-domain factor-1) (RPF-1)
          Length = 684

 Score = 33.9 bits (76), Expect = 0.060
 Identities = 18/60 (30%), Positives = 27/60 (45%)

Query: 207 RKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKINK 266
           RK+R  +T      L   F  N + +     E+A  LN     V++WF N+R  +K   K
Sbjct: 601 RKRRTSFTPQALEILNAHFEKNTHPSGQEMTEIAEKLNYDREVVRVWFCNKRQALKNTIK 660



>gi|400659|sp|Q01860|PO5F1_HUMAN   POU domain, class 5, transcription factor 1 (Octamer-binding
           transcription factor 3) (Oct-3) (Oct-4)
          Length = 360

 Score = 33.5 bits (75), Expect = 0.078
 Identities = 21/69 (30%), Positives = 34/69 (49%)

Query: 204 RSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKK 263
           ++ ++KR          LE  FL     T  +   +A+ L L +  V++WF NRR K K+
Sbjct: 228 QARKRKRTSIENRVRGNLENLFLQCPKPTLQQISHIAQQLGLEKDVVRVWFCNRRQKGKR 287

Query: 264 INKDRAKDE 272
            + D A+ E
Sbjct: 288 SSSDYAQRE 296



>gi|47117872|sp|P78412|IRX6_HUMAN   Iroquois-class homeodomain protein IRX-6 (Iroquois homeobox protein
           6) (Homeodomain protein IRXB3)
          Length = 445

 Score = 33.1 bits (74), Expect = 0.10
 Identities = 15/39 (38%), Positives = 22/39 (56%)

Query: 228 NMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKINK 266
           N Y T+  +  +A +  +T  QV  WF N R ++KK NK
Sbjct: 171 NPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENK 209



>gi|47117874|sp|P78415|IRX3_HUMAN   Iroquois-class homeodomain protein IRX-3 (Iroquois homeobox protein
           3) (Homeodomain protein IRXB1)
          Length = 501

 Score = 33.1 bits (74), Expect = 0.10
 Identities = 15/39 (38%), Positives = 22/39 (56%)

Query: 228 NMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKINK 266
           N Y T+  +  +A +  +T  QV  WF N R ++KK NK
Sbjct: 152 NPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENK 190



>gi|47117908|sp|Q9BZI1|IRX2_HUMAN   Iroquois-class homeodomain protein IRX-2 (Iroquois homeobox protein
           2) (Homeodomain protein IRXA2)
          Length = 471

 Score = 33.1 bits (74), Expect = 0.10
 Identities = 15/39 (38%), Positives = 22/39 (56%)

Query: 228 NMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKINK 266
           N Y T+  +  +A +  +T  QV  WF N R ++KK NK
Sbjct: 139 NPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENK 177



>gi|26006839|sp|Q96KN3|PNX2_HUMAN   Homeobox protein PKNOX2 (PBX/knotted homeobox 2) (Homeobox protein
           PREP-2)
          Length = 460

 Score = 32.7 bits (73), Expect = 0.13
 Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 3/61 (4%)

Query: 204 RSTRKKRCPYTKHQTLELEK---EFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMK 260
           + ++ KR    KH T  +     + L + Y T D + ++A   NLT  QV  WF N R +
Sbjct: 274 KKSKNKRGVLPKHATNIMRSWLFQHLMHPYPTEDEKRQIAAQTNLTLLQVNNWFINARRR 333

Query: 261 M 261
           +
Sbjct: 334 I 334



>gi|12644326|sp|P55347|PNX1_HUMAN   Homeobox protein PKNOX1 (PBX/knotted homeobox 1) (Homeobox protein
           PREP-1)
          Length = 435

 Score = 32.7 bits (73), Expect = 0.13
 Identities = 21/61 (34%), Positives = 32/61 (52%), Gaps = 5/61 (8%)

Query: 205 STRKKRCPYTKHQTLELEKEFLF----NMYLTRDRRYEVARLLNLTERQVKIWFQNRRMK 260
           S++ KR    KH T  + + +LF    + Y T D + ++A   NLT  QV  WF N R +
Sbjct: 257 SSKNKRGVLPKHAT-NVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQVNNWFINARRR 315

Query: 261 M 261
           +
Sbjct: 316 I 316



>gi|2495302|sp|Q15319|PO43_HUMAN   POU domain, class 4, transcription factor 3 (Brain-specific
           homeobox/POU domain protein 3C) (Brn-3C)
          Length = 338

 Score = 32.7 bits (73), Expect = 0.13
 Identities = 24/114 (21%), Positives = 46/114 (40%), Gaps = 16/114 (14%)

Query: 151 TLSLTDYACGSPPVDREKQPSEGAFSENNAENESGGDKPPIDPNNPAANWLHARSTRKKR 210
           TLS  +     P +    + +E A+ E N++ E                  +    ++KR
Sbjct: 235 TLSHNNMIALKPVLQAWLEEAEAAYREKNSKPEL----------------FNGSERKRKR 278

Query: 211 CPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKI 264
                 +   LE  F      + ++   +A  L+L +  V++WF N+R K K++
Sbjct: 279 TSIAAPEKRSLEAYFAIQPRPSSEKIAAIAEKLDLKKNVVRVWFCNQRQKQKRM 332



>gi|2506535|sp|Q01851|PO4F1_HUMAN   POU domain, class 4, transcription factor 1 (Brain-specific
           homeobox/POU domain protein 3A) (Brn-3A) (Oct-T1)
           (Homeobox/POU domain protein RDC-1)
          Length = 423

 Score = 32.3 bits (72), Expect = 0.17
 Identities = 28/116 (24%), Positives = 48/116 (41%), Gaps = 20/116 (17%)

Query: 151 TLSLTDYACGSPPVDREKQPSEGAFSE--NNAENESGGDKPPIDPNNPAANWLHARSTRK 208
           TLS  +     P +    + +EGA  E  N  E  +GG+K                  ++
Sbjct: 320 TLSHNNMIALKPILQAWLEEAEGAQREKMNKPELFNGGEK------------------KR 361

Query: 209 KRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKI 264
           KR      +   LE  F      + ++   +A  L+L +  V++WF N+R K K++
Sbjct: 362 KRTSIAAPEKRSLEAYFAVQPRPSSEKIAAIAEKLDLKKNVVRVWFCNQRQKQKRM 417



>gi|20978495|sp|Q96A47|ISL2_HUMAN   Insulin gene enhancer protein ISL-2 (Islet-2)
          Length = 359

 Score = 32.0 bits (71), Expect = 0.23
 Identities = 31/116 (26%), Positives = 51/116 (43%), Gaps = 12/116 (10%)

Query: 150 HTLSLTDYACGSPPVDREKQPSEGAFSENNAENESGGDKPPIDPNNPAANWLHARS--TR 207
           H L L   A GSP   R   P  GA   +  +  SG  +P + P+      +H ++  T 
Sbjct: 143 HGLLLERAAAGSP---RSPGPLPGARGLHLPDAGSGR-QPALRPH------VHKQTEKTT 192

Query: 208 KKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKK 263
           + R    + Q   L   +  N       + ++  +  L+ R +++WFQN+R K KK
Sbjct: 193 RVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKK 248



>gi|50401058|sp|Q8IU89|LSS3_HUMAN   LAG1 longevity assurance homolog 3
          Length = 383

 Score = 31.6 bits (70), Expect = 0.30
 Identities = 13/22 (59%), Positives = 18/22 (81%)

Query: 237 YEVARLLNLTERQVKIWFQNRR 258
           Y +A+  NLTERQV+ WF++RR
Sbjct: 100 YGLAKKCNLTERQVERWFRSRR 121



>gi|8134548|sp|Q9UPM6|LHX61_HUMAN   LIM/homeobox protein Lhx6.1 (Lhx6)
          Length = 363

 Score = 31.6 bits (70), Expect = 0.30
 Identities = 18/87 (20%), Positives = 38/87 (43%)

Query: 177 ENNAENESGGDKPPIDPNNPAANWLHARSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRR 236
           EN       G+   ++   P+      +  ++ R  +T  Q   ++ +F  +        
Sbjct: 190 ENLKRAAENGNGLTLEGAVPSEQDSQPKPAKRARTSFTAEQLQVMQAQFAQDNNPDAQTL 249

Query: 237 YEVARLLNLTERQVKIWFQNRRMKMKK 263
            ++A +  L+ R +++WFQN R + KK
Sbjct: 250 QKLADMTGLSRRVIQVWFQNCRARHKK 276



>gi|28201858|sp|Q06416|PO5L_HUMAN   POU domain, class 5, transcription factor 1-like protein 1 (Octamer
           binding protein 3-like)
          Length = 359

 Score = 31.2 bits (69), Expect = 0.39
 Identities = 14/34 (41%), Positives = 22/34 (64%)

Query: 239 VARLLNLTERQVKIWFQNRRMKMKKINKDRAKDE 272
           +A+ L L +  V++WF NRR K K+ + D A+ E
Sbjct: 262 IAQQLGLEKDVVRVWFCNRRQKGKRSSSDYAQRE 295



>gi|2495300|sp|Q12837|PO42_HUMAN   POU domain, class 4, transcription factor 2 (Brain-specific
           homeobox/POU domain protein 3B) (Brn-3B)
          Length = 410

 Score = 31.2 bits (69), Expect = 0.39
 Identities = 15/58 (25%), Positives = 29/58 (50%)

Query: 207 RKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKI 264
           ++KR      +   LE  F      + ++   +A  L+L +  V++WF N+R K K++
Sbjct: 347 KRKRTSIAAPEKRSLEAYFAIQPRPSSEKIAAIAEKLDLKKNVVRVWFCNQRQKQKRM 404



>gi|28201859|sp|Q9BZV7|PO5M_HUMAN   POU domain, class 5, transcription factor 1-like protein 2
          Length = 359

 Score = 31.2 bits (69), Expect = 0.39
 Identities = 14/34 (41%), Positives = 22/34 (64%)

Query: 239 VARLLNLTERQVKIWFQNRRMKMKKINKDRAKDE 272
           +A+ L L +  V++WF NRR K K+ + D A+ E
Sbjct: 262 IAQQLGLEKDVVRVWFCNRRQKGKRSSSDYAQRE 295



>gi|6094293|sp|O95343|SIX3_HUMAN   Homeobox protein SIX3 (Sine oculis homeobox homolog 3)
          Length = 332

 Score = 30.8 bits (68), Expect = 0.50
 Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 1/47 (2%)

Query: 215 KHQTLELEKE-FLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMK 260
           K +T  L +E +L + Y    ++ E+A+   LT  QV  WF+NRR +
Sbjct: 214 KERTRSLLREWYLQDPYPNPSKKRELAQATGLTPTQVGNWFKNRRQR 260



>gi|12230578|sp|O95475|SIX6_HUMAN   Homeobox protein SIX6 (Sine oculis homeobox homolog 6) (Optic
           homeobox 2) (Homeodomain protein OPTX2)
          Length = 246

 Score = 30.8 bits (68), Expect = 0.50
 Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 1/47 (2%)

Query: 215 KHQTLELEKE-FLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMK 260
           K +T  L +E +L + Y    ++ E+A+   LT  QV  WF+NRR +
Sbjct: 136 KERTRNLLREWYLQDPYPNPSKKRELAQATGLTPTQVGNWFKNRRQR 182



>gi|46396941|sp|Q8N196|SIX5_HUMAN   Homeobox protein SIX5 (DM locus-associated homeodomain protein)
          Length = 739

 Score = 30.8 bits (68), Expect = 0.50
 Identities = 14/33 (42%), Positives = 19/33 (57%)

Query: 228 NMYLTRDRRYEVARLLNLTERQVKIWFQNRRMK 260
           N Y T D +  +A L  L+  QV  WF+NRR +
Sbjct: 223 NRYPTPDEKRRLATLTGLSLTQVSNWFKNRRQR 255



>gi|12230598|sp|Q9NPC8|SIX2_HUMAN   Homeobox protein SIX2 (Sine oculis homeobox homolog 2)
          Length = 291

 Score = 30.4 bits (67), Expect = 0.66
 Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 1/53 (1%)

Query: 221 LEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKIN-KDRAKDE 272
           L + +  N Y +   + E+A    LT  QV  WF+NRR + +    K+R  +E
Sbjct: 139 LREWYAHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDRAAEAKERENNE 191



>gi|51701426|sp|Q8IZF6|GP112_HUMAN   Probable G-protein coupled receptor 112
          Length = 2799

 Score = 30.4 bits (67), Expect = 0.66
 Identities = 25/84 (29%), Positives = 36/84 (42%), Gaps = 8/84 (9%)

Query: 129 PYGIKPE---PLSARRGDCPTLDTHTLSLTDYACGSPPVDREKQPSEGAFSENNAENESG 185
           P   KP    PL+ R    P++D     ++  AC  P    E+  SE   +E N     G
Sbjct: 701 PMSTKPANELPLTPRETVVPSVDI----ISTLACIQPNFSTEESASETTQTEINGAIVFG 756

Query: 186 GDKPPIDPNNPAANWLHARSTRKK 209
           G   P+ P +     L+A  TRK+
Sbjct: 757 GTTTPV-PKSATTQRLNATVTRKE 779



>gi|12230612|sp|Q9UIU6|SIX4_HUMAN   Homeobox protein SIX4 (Sine oculis homeobox homolog 4)
          Length = 760

 Score = 30.4 bits (67), Expect = 0.66
 Identities = 14/52 (26%), Positives = 30/52 (57%)

Query: 221 LEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKINKDRAKDE 272
           L++ +  N Y +   +  +A++  L+  QV  WF+NRR + +  ++ ++K E
Sbjct: 217 LKELYKQNRYPSPAEKRHLAKITGLSLTQVSNWFKNRRQRDRNPSETQSKSE 268



>gi|20140022|sp|Q14162|SREC_HUMAN   Endothelial cells scavenger receptor precursor (Acetyl LDL
           receptor) (Scavenger receptor class F member 1)
          Length = 830

 Score = 30.4 bits (67), Expect = 0.66
 Identities = 23/77 (29%), Positives = 32/77 (41%), Gaps = 2/77 (2%)

Query: 115 TPGALSFAGLPSSR-PYGIKPEPLSARRGDCPTLDTHTLSLTDYACGSPPVDREKQPSEG 173
           +P +   AGLP +  P  ++PE  + R     T  +         CGSP  D +KQ  E 
Sbjct: 753 SPNSAPKAGLPGATGPMAVRPEE-AVRGLGAGTESSRRAQEPVSGCGSPEQDPQKQAEEE 811

Query: 174 AFSENNAENESGGDKPP 190
              E   EN     +PP
Sbjct: 812 RQEEPEYENVVPISRPP 828



>gi|47606423|sp|P61371|ISL1_HUMAN   Insulin gene enhancer protein ISL-1 (Islet-1)
 gi|47606425|sp|P61373|ISL1_MESAU   Insulin gene enhancer protein ISL-1 (Islet-1)
 gi|47606424|sp|P61372|ISL1_MOUSE   Insulin gene enhancer protein ISL-1 (Islet-1)
 gi|47606422|sp|P61374|ISL1_RAT   Insulin gene enhancer protein ISL-1 (Islet-1)
          Length = 349

 Score = 30.0 bits (66), Expect = 0.86
 Identities = 27/102 (26%), Positives = 42/102 (41%), Gaps = 19/102 (18%)

Query: 181 ENESGGDKPPIDPNNPAANWLHARSTRKKRCPY------------TKHQTLELEKEF--L 226
           E  S G   P+ P +PA     A      R P             T+ +T+  EK+   L
Sbjct: 137 ERASLGAGDPLSPLHPARPLQMAAEPISARQPALRPHVHKQPEKTTRVRTVLNEKQLHTL 196

Query: 227 FNMYLTRDR-----RYEVARLLNLTERQVKIWFQNRRMKMKK 263
              Y    R     + ++  +  L+ R +++WFQN+R K KK
Sbjct: 197 RTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKK 238



>gi|2495290|sp|Q15475|SIX1_HUMAN   Homeobox protein SIX1 (Sine oculis homeobox homolog 1)
          Length = 284

 Score = 29.6 bits (65), Expect = 1.1
 Identities = 14/40 (35%), Positives = 21/40 (52%)

Query: 221 LEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMK 260
           L + +  N Y +   + E+A    LT  QV  WF+NRR +
Sbjct: 139 LREWYAHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQR 178



>gi|123408|sp|P28069|PIT1_HUMAN   Pituitary-specific positive transcription factor 1 (Pit-1) (Growth
           hormone factor 1) (GHF-1)
          Length = 291

 Score = 29.6 bits (65), Expect = 1.1
 Identities = 17/58 (29%), Positives = 28/58 (48%)

Query: 207 RKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKI 264
           RK+R   +      LE+ F      +      +A  LNL +  V++WF NRR + K++
Sbjct: 215 RKRRTTISIAAKDALERHFGEQNKPSSQEIMRMAEELNLEKEVVRVWFCNRRQREKRV 272



>gi|56405299|sp|O00268|TAF4_HUMAN   Transcription initiation factor TFIID subunit 4 (Transcription
          initiation factor TFIID 135 kDa subunit) (TAF(II)135)
          (TAFII-135) (TAFII135) (TAFII-130) (TAFII130)
          Length = 1085

 Score = 29.3 bits (64), Expect = 1.5
 Identities = 15/38 (39%), Positives = 18/38 (47%)

Query: 2  ATTGALGNYYVDSFLLGADAADELSVGRYAPGTLGQPP 39
          A  GALGN+ V     GA  A   +    APG   +PP
Sbjct: 53 AAAGALGNHVVSGSPAGAAGAGPAAPAEGAPGAAPEPP 90



>gi|1175423|sp|P46937|YAP1_HUMAN   65 kDa Yes-associated protein (YAP65)
          Length = 454

 Score = 29.3 bits (64), Expect = 1.5
 Identities = 16/66 (24%), Positives = 33/66 (50%), Gaps = 2/66 (3%)

Query: 161 SPPVDREKQPSEGAFSENNAENESGGDKPPIDPNNPAANWLHARSTRKKRCPYTKHQTLE 220
           SPPV +    S  A ++  +++      PP+ P +P    +   ++ +++    + Q L+
Sbjct: 217 SPPVQQNMMNSASAMNQRISQSAPVKQPPPLAPQSPQGGVMGGSNSNQQQ--QMRLQQLQ 274

Query: 221 LEKEFL 226
           +EKE L
Sbjct: 275 MEKERL 280



>gi|22095989|sp|Q9NPG4|PC12_HUMAN   Protocadherin 12 precursor (Vascular cadherin-2) (Vascular
           endothelial cadherin-2) (VE-cadherin-2) (VE-cad-2)
          Length = 1184

 Score = 29.3 bits (64), Expect = 1.5
 Identities = 28/108 (25%), Positives = 37/108 (34%), Gaps = 22/108 (20%)

Query: 113 EPTPGALSFAGLPSSRPYGIKPEPLSARRGDC--------PTLDTHTLSLTDYACGSPPV 164
           EP P      G P SRP  +   P     GD         P   + TL    +  G    
Sbjct: 867 EPQPAT----GQPRSRPLKVAGSPTGRLAGDQGSEEAPQRPPASSATLRRQRHLNGKVSP 922

Query: 165 DREKQP----------SEGAFSENNAENESGGDKPPIDPNNPAANWLH 202
           ++E  P          S  AF+E N   E   D PP+   +   + LH
Sbjct: 923 EKESGPRQILRSLVRLSVAAFAERNPVEELTVDSPPVQQISQLLSLLH 970



>gi|127619|sp|P01106|MYC_HUMAN   Myc proto-oncogene protein (c-myc)
          Length = 439

 Score = 29.3 bits (64), Expect = 1.5
 Identities = 22/79 (27%), Positives = 32/79 (40%), Gaps = 1/79 (1%)

Query: 115 TPGALSFAGLPSSRPYGIKPEPLSARRGDCPTLDTHTLSLTDYACGSPPVDREKQPSEGA 174
           +P + S      S P G  PEPL       PT  + +    +       V  EK+ + G 
Sbjct: 217 SPSSDSLLSSTESSPQG-SPEPLVLHEETPPTTSSDSEEEQEDEEEIDVVSVEKRQAPGK 275

Query: 175 FSENNAENESGGDKPPIDP 193
            SE+ + +  G  KPP  P
Sbjct: 276 RSESGSPSAGGHSKPPHSP 294



>gi|50401602|sp|Q8N8G2|VGLL2_HUMAN   Transcription cofactor vestigial-like protein 2 (Vgl-2) (VITO1
           protein)
          Length = 317

 Score = 29.3 bits (64), Expect = 1.5
 Identities = 13/36 (36%), Positives = 15/36 (41%)

Query: 32  PGTLGQPPRQAATLAEHPDFSPCSFQSKATVFGASW 67
           P   G+P R A   A  P   PC    K    GA+W
Sbjct: 245 PAASGRPARLATAPAPAPGSPPCELSGKGEPAGAAW 280



>gi|6686275|sp|Q99798|ACON_HUMAN   Aconitate hydratase, mitochondrial precursor (Citrate hydro-lyase)
           (Aconitase)
          Length = 780

 Score = 29.3 bits (64), Expect = 1.5
 Identities = 18/43 (41%), Positives = 23/43 (53%), Gaps = 4/43 (9%)

Query: 15  FLLGADAADELSVGRYAPG--TLGQPPRQAATLAEHPDFSPCS 55
           F L A  ADEL  G + PG  T   PP+ ++   +H D SP S
Sbjct: 522 FRLEAPDADELPKGEFDPGQDTYQHPPKDSS--GQHVDVSPTS 562



>gi|28202258|sp|P20265|PO3F2_HUMAN   POU domain, class 3, transcription factor 2 (Nervous-system
           specific octamer-binding transcription factor N-Oct-3)
           (Brain-specific homeobox/POU domain protein 2) (Brain-2)
           (Brn-2 protein)
          Length = 443

 Score = 28.9 bits (63), Expect = 1.9
 Identities = 19/58 (32%), Positives = 26/58 (44%)

Query: 207 RKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKI 264
           RKKR          LE  FL     +      +A  L L +  V++WF NRR K K++
Sbjct: 355 RKKRTSIEVSVKGALESHFLKCPKPSAQEITSLADSLQLEKEVVRVWFCNRRQKEKRM 412



>gi|2506534|sp|P20264|PO33_HUMAN   POU domain, class 3, transcription factor 3 (Brain-specific
           homeobox/POU domain protein 1) (Brain-1) (Brn-1 protein)
          Length = 500

 Score = 28.9 bits (63), Expect = 1.9
 Identities = 19/58 (32%), Positives = 26/58 (44%)

Query: 207 RKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKI 264
           RKKR          LE  FL     +      +A  L L +  V++WF NRR K K++
Sbjct: 407 RKKRTSIEVSVKGALESHFLKCPKPSAQEITNLADSLQLEKEVVRVWFCNRRQKEKRM 464



>gi|41017418|sp|Q9UK53|ING1_HUMAN   Inhibitor of growth protein 1
          Length = 422

 Score = 28.5 bits (62), Expect = 2.5
 Identities = 15/41 (36%), Positives = 20/41 (48%)

Query: 156 DYACGSPPVDREKQPSEGAFSENNAENESGGDKPPIDPNNP 196
           D A G+P   + K   +   S+  AE E+     PIDPN P
Sbjct: 313 DGASGTPKEKKAKTSKKKKRSKAKAEREASPADLPIDPNEP 353



>gi|6685621|sp|Q9Y6R4|M3K4_HUMAN   Mitogen-activated protein kinase kinase kinase 4 (MAPK/ERK kinase
           kinase 4) (MEK kinase 4) (MEKK 4) (MAP three kinase 1)
          Length = 1607

 Score = 28.1 bits (61), Expect = 3.3
 Identities = 23/79 (29%), Positives = 27/79 (34%), Gaps = 6/79 (7%)

Query: 115 TPGALSFAGLPSSRPYGIKPEPLSARRGDCPTLDTHTLSLTDYACGSPPVDREKQPSEGA 174
           TP A      P   P    PEP +    +C        +L D AC SP  D E       
Sbjct: 17  TPAAAMEEPPPPPPPPPPPPEPETESEPECCLAARQEGTLGDSACKSPESDLED------ 70

Query: 175 FSENNAENESGGDKPPIDP 193
           FS+        G  PP  P
Sbjct: 71  FSDETNTENLYGTSPPSTP 89



>gi|2833265|sp|Q15695|U2R1_HUMAN   U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa subunit
           related-protein 1 (U2(RNU2) small nuclear RNA auxillary
           factor 1-like 1)
          Length = 479

 Score = 27.7 bits (60), Expect = 4.3
 Identities = 16/59 (27%), Positives = 31/59 (52%), Gaps = 1/59 (1%)

Query: 215 KHQTLELEKEFLFNMYLTRDRR-YEVARLLNLTERQVKIWFQNRRMKMKKINKDRAKDE 272
           + + LE E+E L   +L R+++  E  R+    E   K W + +  K+K+  K++ + E
Sbjct: 65  EEKLLERERERLHEEWLLREQKAQEEFRIKKEKEEAAKKWLEEQERKLKEQWKEQQRKE 123



>gi|1345629|sp|P49335|PO3F4_HUMAN   POU domain, class 3, transcription factor 4 (Brain-specific
           homeobox/POU domain protein 4) (Brain-4) (Brn-4)
          Length = 361

 Score = 27.7 bits (60), Expect = 4.3
 Identities = 19/58 (32%), Positives = 25/58 (43%)

Query: 207 RKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKI 264
           RKKR          LE  FL            +A  L L +  V++WF NRR K K++
Sbjct: 279 RKKRTSIEVSVKGVLETHFLKCPKPAAQEISSLADSLQLEKEVVRVWFCNRRQKEKRM 336



>gi|2500875|sp|Q06413|MEF2C_HUMAN   Myocyte-specific enhancer factor 2C
          Length = 473

 Score = 27.7 bits (60), Expect = 4.3
 Identities = 23/87 (26%), Positives = 38/87 (43%), Gaps = 2/87 (2%)

Query: 124 LPSSRPYGIKPEPLSARRGDCPTLDTHTLSLTDYACGSPPVDREKQPSEGAFSENNAENE 183
           LPS++   IK EP+S  R D  T  +     T +  G  PVD     S  ++  ++ E+ 
Sbjct: 382 LPSTQSLNIKSEPVSPPR-DRTTTPSRYPQHTRHEAGRSPVDSLSSCS-SSYDGSDREDH 439

Query: 184 SGGDKPPIDPNNPAANWLHARSTRKKR 210
                 PI    P+ +   + S ++ R
Sbjct: 440 RNEFHSPIGLTRPSPDERESPSVKRMR 466



>gi|2498434|sp|Q00341|VIGLN_HUMAN   Vigilin (High density lipoprotein-binding protein) (HDL-binding
            protein)
          Length = 1268

 Score = 27.7 bits (60), Expect = 4.3
 Identities = 22/98 (22%), Positives = 41/98 (41%), Gaps = 10/98 (10%)

Query: 165  DREKQP---SEGAFSENNAENESGGDKPPIDPNNPAANWLHARSTRKKRCPYTKHQ---- 217
            DRE+     +E    EN  E   G +    DP +P    +   S RK++C   K      
Sbjct: 911  DREENAVHSTEPVVQENGDEAGEGREAKDCDPGSPRRCDIIIISGRKEKCEAAKEALEAL 970

Query: 218  ---TLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKI 252
               T+E+E  F  + Y+   +   + ++++  E  + +
Sbjct: 971  VPVTIEVEVPFDLHRYVIGQKGSGIRKMMDEFEVNIHV 1008



>gi|44889075|sp|Q9H4I2|ZHX3_HUMAN   Zinc fingers and homeoboxes protein 3 (Triple homeobox 1 protein)
          Length = 956

 Score = 27.3 bits (59), Expect = 5.6
 Identities = 13/53 (24%), Positives = 25/53 (47%)

Query: 217 QTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKINKDRA 269
           Q   L+  F  N +  +     + ++  L+ R+V+ WF +RR   + +   RA
Sbjct: 505 QLSALKGSFCRNQFPGQSEVEHLTKVTGLSTREVRKWFSDRRYHCRNLKGSRA 557



>gi|13124503|sp|O60315|SIP1_HUMAN   Zinc finger homeobox protein 1b (Smad interacting protein 1)
           (SMADIP1) (HRIHFB2411)
          Length = 1214

 Score = 27.3 bits (59), Expect = 5.6
 Identities = 13/48 (27%), Positives = 25/48 (52%), Gaps = 1/48 (2%)

Query: 212 PYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRM 259
           PY  H ++ L+  +  NM    D   +++  + L +  VK WF+ R++
Sbjct: 651 PYKDHMSV-LKAYYAMNMEPNSDELLKISIAVGLPQEFVKEWFEQRKV 697



>gi|1706179|sp|P49711|CTCF_HUMAN   Transcriptional repressor CTCF (CCCTC-binding factor) (CTCFL
           paralog) (11-zinc finger protein)
          Length = 727

 Score = 27.3 bits (59), Expect = 5.6
 Identities = 13/26 (50%), Positives = 15/26 (57%)

Query: 165 DREKQPSEGAFSENNAENESGGDKPP 190
           D E++  EG  SE NAE   G  KPP
Sbjct: 227 DFEEEQQEGLLSEVNAEKVVGNMKPP 252



>gi|1709437|sp|Q03052|PO3F1_HUMAN   POU domain, class 3, transcription factor 1 (Octamer-binding
           transcription factor 6) (Oct-6) (POU-domain
           transcription factor SCIP)
          Length = 448

 Score = 27.3 bits (59), Expect = 5.6
 Identities = 19/58 (32%), Positives = 26/58 (44%)

Query: 207 RKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKI 264
           RKKR          LE  FL     +      +A  L L +  V++WF NRR K K++
Sbjct: 337 RKKRTSIEVGVKGALESHFLKCPKPSAHEITGLADSLQLEKEVVRVWFCNRRQKEKRM 394



>gi|51316484|sp|Q8N5B7|LSS5_HUMAN   LAG1 longevity assurance homolog 5
          Length = 392

 Score = 27.3 bits (59), Expect = 5.6
 Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 1/52 (1%)

Query: 212 PYTKHQTLELEKEFL-FNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMK 262
           PY       LEK F+    Y  + R   +++ L+   R+++ WF++RR + K
Sbjct: 83  PYQAQPNAILEKVFISITKYPDKKRLEGLSKQLDWNVRKIQCWFRHRRNQDK 134



>gi|56404975|sp|Q9P202|WHRN_HUMAN   Whirlin (Autosomal recessive deafness type 31 protein)
          Length = 907

 Score = 27.3 bits (59), Expect = 5.6
 Identities = 25/84 (29%), Positives = 32/84 (38%), Gaps = 7/84 (8%)

Query: 114 PTPGALSFAGLPSSRPY-GIKPEPLSARRGDCPTLDTHTLSLTDYACGSPPVDREKQPSE 172
           PTPG  S   LPSS  Y  + P   S++R     LD H   +  +  G  P  R + P  
Sbjct: 635 PTPGTSSAQDLPSSPIYASVSPANPSSKR----PLDAHLALVNQHPIG--PFPRVQSPPH 688

Query: 173 GAFSENNAENESGGDKPPIDPNNP 196
                  A    G   PP    +P
Sbjct: 689 LKSPSAEATVAGGCLLPPSPSGHP 712



>gi|47606716|sp|O60524|SDCG1_HUMAN   Serologically defined colon cancer antigen 1 (Antigen NY-CO-1)
          Length = 1076

 Score = 27.3 bits (59), Expect = 5.6
 Identities = 19/70 (27%), Positives = 29/70 (41%), Gaps = 9/70 (12%)

Query: 132 IKPEPLSARRG---------DCPTLDTHTLSLTDYACGSPPVDREKQPSEGAFSENNAEN 182
           +K +P   R G         + P L+  T  L D+A   P  D+E+Q  +   +E N  +
Sbjct: 922 VKKQPQKPRGGQRVSDNIKKETPFLEVITHELQDFAVDDPHDDKEEQDLDQQGNEENLFD 981

Query: 183 ESGGDKPPID 192
              G   P D
Sbjct: 982 SLTGQPHPED 991



>gi|48474644|sp|Q9H4M7|PLA4_HUMAN   Pleckstrin homology domain-containing protein family A member 4
           (Phosphoinositol 3-phosphate binding protein-1) (PEPP-1)
          Length = 779

 Score = 26.9 bits (58), Expect = 7.3
 Identities = 35/117 (29%), Positives = 44/117 (37%), Gaps = 29/117 (24%)

Query: 105 GRYMRSWLEPTPGALSFAGLPSSR--------PYGIKPEPLS--------ARRGDCPTLD 148
           GR     L P+P     +GL   R        P    P PLS        ARR   P+ D
Sbjct: 203 GRGRPRLLTPSPTTDLHSGLQMRRARSPDLFTPLSRPPSPLSLPRPRSAPARRPPAPSGD 262

Query: 149 T------HT-LSLTDYACGSPPVD---REKQPSEGAFSENNAENESGGDKPPIDPNN 195
           T      HT LS  D     PP+D   + +  S          +E+GG KPP  P +
Sbjct: 263 TAPPARPHTPLSRIDVR---PPLDWGPQRQTLSRPPTPRRGPPSEAGGGKPPRSPQH 316



>gi|2498904|sp|Q14242|SELPL_HUMAN   P-selectin glycoprotein ligand 1 precursor (PSGL-1) (Selectin P
           ligand) (CD162 antigen)
          Length = 412

 Score = 26.9 bits (58), Expect = 7.3
 Identities = 13/32 (40%), Positives = 17/32 (53%)

Query: 116 PGALSFAGLPSSRPYGIKPEPLSARRGDCPTL 147
           P A +  GL  ++  G+ PEP   R GD  TL
Sbjct: 376 PSATANGGLSKAKSPGLTPEPREDREGDDLTL 407



>gi|6226862|sp|Q99504|EYA3_HUMAN   Eyes absent homolog 3
          Length = 573

 Score = 26.9 bits (58), Expect = 7.3
 Identities = 19/83 (22%), Positives = 40/83 (48%), Gaps = 1/83 (1%)

Query: 148 DTHTLSLTDYACGSPPVDREKQPSEGAFSENNAENESGGDKPPI-DPNNPAANWLHARST 206
           ++ TL+ T Y    P V      ++   S + + + S     P  D ++ +   +++++ 
Sbjct: 228 ESTTLAATTYQSEKPSVMAPAPAAQKLSSGDPSTSPSLSQTTPSKDTDDQSRKNMNSKNR 287

Query: 207 RKKRCPYTKHQTLELEKEFLFNM 229
            KK+   T  Q  ELE+ FL+++
Sbjct: 288 GKKKADATSSQDSELERVFLWDL 310



>gi|32129730|sp|Q9BV36|MLPH_HUMAN   Melanophilin (Exophilin 3) (Synaptotagmin-like protein 2a) (Slp
           homologue lacking C2 domains-a)
          Length = 600

 Score = 26.6 bits (57), Expect = 9.5
 Identities = 20/73 (27%), Positives = 30/73 (41%), Gaps = 1/73 (1%)

Query: 113 EPTPGALSFAGLPSSRPYGIKPEPLSARRGDCPTLDTHTLSL-TDYACGSPPVDREKQPS 171
           E   GA      P  +P  I P    A    CP   +H ++L T  A GS  +  E+ P 
Sbjct: 246 EADTGASGCHSHPEEQPTSISPSRHGALAELCPPGGSHRMALGTAAALGSNVIRNEQLPL 305

Query: 172 EGAFSENNAENES 184
           +     + ++ ES
Sbjct: 306 QYLADVDTSDEES 318



>gi|33860160|sp|O43593|HAIR_HUMAN   Hairless protein
          Length = 1189

 Score = 26.6 bits (57), Expect = 9.5
 Identities = 28/104 (26%), Positives = 38/104 (36%), Gaps = 5/104 (4%)

Query: 111 WLEPTPGALSFAGLPSSRPYGIKPEPLSARRGDCPTLDTHTLSLTDYACGSPPVDREKQP 170
           W  P  G L +   P + P    PEP   +RG C +    T       CG      E   
Sbjct: 294 WAGPGDGNLGYQLGPPATPRCPSPEPPVTQRGCCSSYPP-TKGGDLGPCGKCQEGLEGGA 352

Query: 171 SEGAFSENNAENESGGDK--PPIDPNNPAANWLHARSTRKKRCP 212
           S GA   +   N++ G +  PP         WL  R + +  CP
Sbjct: 353 S-GASEPSEEVNKASGPRACPPSHHTKLKKTWL-TRHSEQFECP 394



>gi|27924006|sp|Q9Y493|ZAN_HUMAN   Zonadhesin precursor
          Length = 2812

 Score = 26.6 bits (57), Expect = 9.5
 Identities = 25/74 (33%), Positives = 29/74 (39%), Gaps = 11/74 (14%)

Query: 135  EPLSARRGDCPTLDTHTLS-LTDYACGSPPVDREKQPSE-GAFSENNAENESGG------ 186
            EP S R G+  TL  HT     +  C   P   + Q  E GA      E   GG      
Sbjct: 2687 EPFSCRAGEVCTLGNHTQGCFPESPCLQNPCQNDGQCREQGATFTCECEVGYGGGLCMEP 2746

Query: 187  -DKPPIDPNNPAAN 199
             D PP  P  PA+N
Sbjct: 2747 RDAPP--PRKPASN 2758



>gi|51701684|sp|Q8TCU5|NM3A_HUMAN   Glutamate [NMDA] receptor subunit 3A precursor
           (N-methyl-D-aspartate receptor subtype NR3A) (NMDAR-L)
          Length = 1115

 Score = 26.6 bits (57), Expect = 9.5
 Identities = 27/105 (25%), Positives = 39/105 (37%), Gaps = 11/105 (10%)

Query: 112 LEPTPGALSFAGLPSSRPYGIKPEPLSARRGDCPTLDTHTLSLTDYACGSPPVDREKQPS 171
           L P P AL  AG+PSS  +   P+P    +     +    + L  +   + P    + P 
Sbjct: 16  LLPPPCALVLAGVPSSSSH---PQPCQILKRIGHAVRVGAVHLQPWT--TAPRAASRAPD 70

Query: 172 EGAFSENNAENESGGDKPPIDPNNPAANW----LHARSTRKKRCP 212
           +        E E G  + P    +P A W    LH R     R P
Sbjct: 71  DSRAGAQRDEPEPGTRRSPAP--SPGARWLGSTLHGRGPPGSRKP 113






  Database: Non-redundant SwissProt sequences
    Posted date:  Mar 15, 2005 10:11 AM
  Number of letters in database: 60,490,055
  Number of sequences in database:  164,271
  
Lambda     K      H
   0.315    0.132    0.408 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 663,598
Number of Sequences: 164271
Number of extensions: 31534
Number of successful extensions: 141
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 109
Number of HSP's gapped (non-prelim): 34
length of query: 272
length of database: 6,424,444
effective HSP length: 94
effective length of query: 178
effective length of database: 5,305,374
effective search space: 944356572
effective search space used: 944356572
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (26.6 bits)