RID=1111166331-561-32233079495.BLASTQ2, FGENESH (10), GENEid (11): 2 exon (s) 227757

BLASTP 2.2.10 [Oct-19-2004]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
RID: 1111166331-561-32233079495.BLASTQ2
Query= FGENESH (10), GENEid (11): 2 exon (s) 227757 - 229848 233 aa, chain - (233 letters)
Database: Non-redundant SwissProt sequences 164,271 sequences; 60,490,055 total letters
If you have any problems or questions with the results of this search
please refer to the BLAST FAQs
Taxonomy reports
Distribution of 179 Blast Hits on the Query Sequence


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|17378385|sp|P31267|HXA6_HUMAN  Homeobox protein Hox-A6 (H...   458   e-130 
gi|13124738|sp|P17509|HXB6_HUMAN  Homeobox protein Hox-B6 (H...   209   8e-55 
gi|20141493|sp|P09630|HXC6_HUMAN  Homeobox protein Hox-C6 (H...   181   2e-46 
gi|52788238|sp|P20719|HXA5_HUMAN  Homeobox protein Hox-A5 (H...   115   1e-26 
gi|20141491|sp|P09016|HXD4_HUMAN  Homeobox protein Hox-D4 (H...   111   2e-25 
gi|6166217|sp|Q00056|HXA4_HUMAN  Homeobox protein Hox-A4 (Ho...   111   2e-25 
gi|400000|sp|P09067|HXB5_HUMAN  Homeobox protein Hox-B5 (Hox...   110   3e-25 
gi|123255|sp|P09629|HXB7_HUMAN  Homeobox protein Hox-B7 (Hox...   110   4e-25 
gi|547692|sp|P17483|HXB4_HUMAN  Homeobox protein Hox-B4 (Hox...   107   4e-24 
gi|123279|sp|P09017|HXC4_HUMAN  Homeobox protein Hox-C4 (Hox...   106   6e-24 
gi|3915721|sp|P31268|HXA7_HUMAN  Homeobox protein Hox-A7 (Ho...   103   4e-23 
gi|232262|sp|Q00444|HXC5_HUMAN  Homeobox protein Hox-C5 (Hox...   101   2e-22 
gi|6166222|sp|P31249|HXD3_HUMAN  Homeobox protein Hox-D3 (Ho...    99   2e-21 
gi|13124745|sp|P31273|HXC8_HUMAN  Homeobox protein Hox-C8 (H...    96   1e-20 
gi|13124737|sp|P13378|HXD8_HUMAN  Homeobox protein Hox-D8 (H...    92   1e-19 
gi|20141506|sp|P17481|HXB8_HUMAN  Homeobox protein Hox-B8 (H...    92   1e-19 
gi|6016293|sp|O43365|HXA3_HUMAN  Homeobox protein Hox-A3 (Ho...    84   3e-17 
gi|20141537|sp|P31274|HXC9_HUMAN  Homeobox protein Hox-C9 (H...    84   4e-17 
gi|123268|sp|P14651|HXB3_HUMAN  Homeobox protein Hox-B3 (Hox...    84   5e-17 
gi|123286|sp|P28356|HXD9_HUMAN  Homeobox protein Hox-D9 (Hox...    80   8e-16 
gi|6166216|sp|P49639|HXA1_HUMAN  Homeobox protein Hox-A1 (Ho...    79   1e-15 
gi|6016292|sp|O43364|HXA2_HUMAN  Homeobox protein Hox-A2           78   3e-15 
gi|1708540|sp|P52945|IPF1_HUMAN  Insulin promoter factor-1 (...    77   5e-15 
gi|6166219|sp|P31269|HXA9_HUMAN  Homeobox protein Hox-A9 (Ho...    77   6e-15 
gi|123270|sp|P14652|HXB2_HUMAN  Homeobox protein Hox-B2 (Hox...    77   6e-15 
gi|17378648|sp|Q9GZZ0|HXD1_HUMAN  Homeobox protein Hox-D1          76   8e-15 
gi|1345720|sp|P47902|CDX1_HUMAN  Homeobox protein CDX-1 (Cau...    75   1e-14 
gi|20141612|sp|Q9NYD6|HXC10_HUMAN  Homeobox protein Hox-C10        74   5e-14 
gi|13124743|sp|P31260|HXA10_HUMAN  Homeobox protein Hox-A10 ...    74   5e-14 
gi|20141507|sp|P17482|HXB9_HUMAN  Homeobox protein Hox-B9 (H...    73   7e-14 
gi|123271|sp|P14653|HXB1_HUMAN  Homeobox protein Hox-B1 (Hox...    72   2e-13 
gi|123289|sp|P28358|HXD10_HUMAN  Homeobox protein Hox-D10 (H...    72   2e-13 
gi|45644931|sp|P50219|HLXB9_HUMAN  Homeobox protein HB9            72   2e-13 
gi|20141282|sp|Q99626|CDX2_HUMAN  Homeobox protein CDX-2 (Ca...    71   4e-13 
gi|12644203|sp|P31277|HXD11_HUMAN  Homeobox protein Hox-D11 ...    69   2e-12 
gi|20138327|sp|Q9BZM3|GSH2_HUMAN  Homeobox protein GSH-2           68   2e-12 
gi|27923786|sp|Q9H4S2|GSHI_HUMAN  Homeobox protein GSH-1           68   3e-12 
gi|1709079|sp|P50222|MEOX2_HUMAN  Homeobox protein MOX-2 (Me...    67   4e-12 
gi|1709078|sp|P50221|MEOX1_HUMAN  Homeobox protein MOX-1 (Me...    67   4e-12 
gi|12644308|sp|P52951|GBX2_HUMAN  Homeobox protein GBX-2 (Ga...    67   7e-12 
gi|12230077|sp|Q14549|GBX1_HUMAN  Homeobox protein GBX-1 (Ga...    65   2e-11 
gi|3023467|sp|O14627|CDX4_HUMAN  Homeobox protein CDX-4 (Cau...    65   3e-11 
gi|3287858|sp|O43248|HXC11_HUMAN  Homeobox protein Hox-C11         62   1e-10 
gi|13124744|sp|P31270|HXA11_HUMAN  Homeobox protein Hox-A11 ...    62   2e-10 
gi|6016211|sp|P78426|NK61_HUMAN  Homeobox protein Nkx-6.1          60   8e-10 
gi|399982|sp|P31314|TLX1_HUMAN  T-cell leukemia homeobox pro...    56   9e-09 
gi|20141538|sp|P31275|HXC12_HUMAN  Homeobox protein Hox-C12 ...    56   9e-09 
gi|12644227|sp|P35452|HXD12_HUMAN  Homeobox protein Hox-D12 ...    56   1e-08 
gi|2833256|sp|Q14774|HLX1_HUMAN  Homeobox protein HLX1 (Home...    56   1e-08 
gi|12231013|sp|Q03828|EVX2_HUMAN  Homeobox even-skipped homo...    56   1e-08 
gi|1352398|sp|P49640|EVX1_HUMAN  Homeobox even-skipped homol...    55   2e-08 
gi|13431329|sp|Q9UMQ3|BARX2_HUMAN  Homeobox protein BarH-like 2    55   2e-08 
gi|23831508|sp|O43711|TLX3_HUMAN  T-cell leukemia homeobox p...    55   2e-08 
gi|50403792|sp|Q92826|HXB13_HUMAN  Homeobox protein Hox-B13        54   3e-08 
gi|547658|sp|Q03014|HHEX_HUMAN  Homeobox protein PRH (Hemato...    54   3e-08 
gi|14194481|sp|Q9HBU1|BARX1_HUMAN  Homeobox protein BarH-like 1    54   3e-08 
gi|21903415|sp|P19622|HME2_HUMAN  Homeobox protein engrailed...    54   4e-08 
gi|19862512|sp|Q04743|EMX2_HUMAN  Homeobox protein EMX2 (Emp...    54   6e-08 
gi|14917010|sp|Q05925|HME1_HUMAN  Homeobox protein engrailed...    54   6e-08 
gi|20532295|sp|Q9UIW0|VAX2_HUMAN  Ventral anterior homeobox 2      52   1e-07 
gi|29336920|sp|Q9BZE3|BARH1_HUMAN  BarH-like 1 homeobox prot...    52   1e-07 
gi|6016210|sp|P78367|NK32_HUMAN  Homeobox protein Nkx-3.2 (B...    52   1e-07 
gi|57015304|sp|Q04741|EMX1_HUMAN  Homeobox protein EMX1 (Emp...    52   1e-07 
gi|20532396|sp|O43763|TLX2_HUMAN  T-cell leukemia homeobox p...    52   1e-07 
gi|47117915|sp|Q9NY43|BARH2_HUMAN  BarH-like 2 homeobox protein    52   1e-07 
gi|17377578|sp|Q99801|NKX31_HUMAN  Homeobox protein Nkx-3.1        51   3e-07 
gi|27923733|sp|Q96QS3|ARX_HUMAN  Homeobox protein ARX (Arist...    51   3e-07 
gi|1708211|sp|P52952|NK25_HUMAN  Homeobox protein Nkx-2.5 (H...    50   5e-07 
gi|2828197|sp|P31271|HXA13_HUMAN  Homeobox protein Hox-A13 (...    50   5e-07 
gi|20141539|sp|P31276|HXC13_HUMAN  Homeobox protein Hox-C13 ...    50   6e-07 
gi|23503066|sp|P28360|MSX1_HUMAN  Homeobox protein MSX-1 (Ho...    50   6e-07 
gi|27923815|sp|Q8TAU0|NKX23_HUMAN  Homeobox protein Nkx-2.3 ...    50   6e-07 
gi|38605720|sp|P56177|DLX1_HUMAN  Homeobox protein DLX-1           50   6e-07 
gi|2851475|sp|P35453|HXD13_HUMAN  Homeobox protein Hox-D13 (...    49   1e-06 
gi|13959687|sp|P35548|MSX2_HUMAN  Homeobox protein MSX-2 (Ho...    49   1e-06 
gi|2506529|sp|Q07687|DLX2_HUMAN  Homeobox protein DLX-2            49   2e-06 
gi|6016208|sp|O15522|NK28_HUMAN  Homeobox protein Nkx-2.8 (H...    49   2e-06 
gi|1174819|sp|P43699|TITF1_HUMAN  Thyroid transcription fact...    48   2e-06 
gi|6174907|sp|Q99697|PITX2_HUMAN  Pituitary homeobox 2 (RIEG...    47   4e-06 
gi|6093723|sp|O75364|PITX3_HUMAN  Pituitary homeobox 3 (Home...    47   4e-06 
gi|3913487|sp|O60479|DLX3_HUMAN  Homeobox protein DLX-3            47   5e-06 
gi|3024482|sp|P78337|PITX1_HUMAN  Pituitary homeobox 1 (Hind...    47   5e-06 
gi|1730095|sp|P52954|LBX1_HUMAN  Transcription factor LBX1         47   5e-06 
gi|27923817|sp|Q9H2Z4|NK24_HUMAN  Homeobox protein Nkx-2.4 (...    46   9e-06 
gi|6016205|sp|O95096|NKX22_HUMAN  Homeobox protein Nkx-2.2 (...    46   1e-05 
gi|12644329|sp|P56178|DLX5_HUMAN  Homeobox protein DLX-5           46   1e-05 
gi|6174889|sp|P26367|PAX6_HUMAN  Paired box protein Pax-6 (O...    46   1e-05 
gi|17380297|sp|Q9Y2V3|RX_HUMAN  Retinal homeobox protein Rx ...    46   1e-05 
gi|3914276|sp|O43316|PAX4_HUMAN  Paired box protein Pax-4          46   1e-05 
gi|12644330|sp|P56179|DLX6_HUMAN  Homeobox protein DLX-6           45   2e-05 
gi|3915680|sp|Q92988|DLX4_HUMAN  Homeobox protein DLX-4 (DLX...    45   2e-05 
gi|8134640|sp|O14813|PHX2A_HUMAN  Paired mesoderm homeobox p...    44   4e-05 
gi|13626112|sp|Q9H161|ALX4_HUMAN  Homeobox protein aristales...    44   4e-05 
gi|37537987|sp|Q9BQY4|PEP2_HUMAN  Paired-like homeobox prote...    44   5e-05 
gi|48428084|sp|Q8N693|ESX1L_HUMAN  Extraembryonic, spermatog...    44   5e-05 
gi|13626107|sp|O95076|ALX3_HUMAN  Homeobox protein aristales...    44   5e-05 
gi|12644347|sp|P78413|IRX4_HUMAN  Iroquois-class homeodomain...    44   6e-05 
gi|8247951|sp|P23759|PAX7_HUMAN  Paired box protein Pax-7 (H...    44   6e-05 
gi|3023579|sp|Q15699|CRT1_HUMAN  Cartilage homeoprotein 1 (C...    43   1e-04 
gi|1172022|sp|P23760|PAX3_HUMAN  Paired box protein Pax-3 (H...    42   1e-04 
gi|17374365|sp|P58304|CHX10_HUMAN  Homeobox protein CHX10 (C...    41   3e-04 
gi|8134644|sp|Q99453|PHX2B_HUMAN  Paired mesoderm homeobox p...    41   3e-04 
gi|18202099|sp|O60902|SHOX2_HUMAN  Short stature homeobox pr...    40   5e-04 
gi|25009572|sp|Q9NZR4|VSX1_HUMAN  Visual system homeobox 1 (...    40   7e-04 
gi|47117872|sp|P78412|IRX6_HUMAN  Iroquois-class homeodomain...    40   9e-04 
gi|47117908|sp|Q9BZI1|IRX2_HUMAN  Iroquois-class homeodomain...    40   9e-04 
gi|7531125|sp|P56915|GSC_HUMAN  Homeobox protein goosecoid         39   0.001 
gi|47117871|sp|P78411|IRX5_HUMAN  Iroquois-class homeodomain...    39   0.001 
gi|6831676|sp|O15266|SHOX_HUMAN  Short stature homeobox prot...    39   0.001 
gi|6685480|sp|O15499|GSCL_HUMAN  Homeobox protein goosecoid-...    38   0.003 
gi|6174916|sp|P54821|PRRX1_HUMAN  Paired mesoderm homeobox p...    37   0.004 
gi|12230168|sp|Q9UBX0|HESX1_HUMAN  Homeobox expressed in ES ...    37   0.004 
gi|6093787|sp|O75360|PROP1_HUMAN  Homeobox protein prophet o...    37   0.004 
gi|12644475|sp|Q99811|PRRX2_HUMAN  Paired mesoderm homeobox ...    37   0.006 
gi|37537960|sp|Q8NHV9|PEPP1_HUMAN  Paired-like homeobox prot...    36   0.012 
gi|3287764|sp|O43186|CRX_HUMAN  Cone-rod homeobox protein          35   0.016 
gi|47117873|sp|P78414|IRX1_HUMAN  Iroquois-class homeodomain...    35   0.016 
gi|47117874|sp|P78415|IRX3_HUMAN  Iroquois-class homeodomain...    35   0.021 
gi|123402|sp|P09086|PO2F2_HUMAN  POU domain, class 2, transc...    34   0.047 
gi|28202257|sp|P14859|PO2F1_HUMAN  POU domain, class 2, tran...    33   0.081 
gi|417425|sp|P32242|OTX1_HUMAN  Homeobox protein OTX1              33   0.081 
gi|417427|sp|P32243|OTX2_HUMAN  Homeobox protein OTX2              33   0.11  
gi|2495290|sp|Q15475|SIX1_HUMAN  Homeobox protein SIX1 (Sine...    32   0.14  
gi|12230598|sp|Q9NPC8|SIX2_HUMAN  Homeobox protein SIX2 (Sin...    32   0.14  
gi|28201861|sp|Q9UKI9|PO2F3_HUMAN  POU domain, class 2, tran...    32   0.14  
gi|60416412|sp|P48742|LHX1_HUMAN  LIM/homeobox protein Lhx1 ...    32   0.18  
gi|18202938|sp|Q9H2C1|LHX5_HUMAN  LIM/homeobox protein Lhx5        32   0.18  
gi|12230612|sp|Q9UIU6|SIX4_HUMAN  Homeobox protein SIX4 (Sin...    32   0.18  
gi|18202510|sp|Q15911|ATBF1_HUMAN  Alpha-fetoprotein enhance...    32   0.18  
gi|20978495|sp|Q96A47|ISL2_HUMAN  Insulin gene enhancer prot...    31   0.31  
gi|730281|sp|P40426|PBX3_HUMAN  Pre-B-cell leukemia transcri...    30   0.52  
gi|47606423|sp|P61371|ISL1_HUMAN  Insulin gene enhancer prot...    30   0.68  
gi|20141754|sp|P41778|PBX1_MOUSE  Pre-B-cell leukemia transc...    30   0.89  
gi|1352729|sp|P40425|PBX2_HUMAN  Pre-B-cell leukemia transcr...    30   0.89  
gi|28380240|sp|Q9C0A1|ZFHX2_HUMAN  Zinc finger homeobox prot...    30   0.89  
gi|12643415|sp|Q9UBR4|LHX3_HUMAN  LIM/homeobox protein Lhx3        29   1.2   
gi|27923801|sp|Q8TE12|LMX1A_HUMAN  LIM homeobox transcriptio...    29   1.2   
gi|20138668|sp|Q969G2|LHX4_HUMAN  LIM/homeobox protein Lhx4        29   1.2   
gi|8247930|sp|O60663|LMX1B_HUMAN  LIM homeobox transcription...    29   1.2   
gi|8247936|sp|P50458|LHX2_HUMAN  LIM/homeobox protein Lhx2 (...    29   1.5   
gi|6094293|sp|O95343|SIX3_HUMAN  Homeobox protein SIX3 (Sine...    29   1.5   
gi|127819|sp|P22736|NR4A1_HUMAN  Orphan nuclear receptor NR4...    29   1.5   
gi|1709437|sp|Q03052|PO3F1_HUMAN  POU domain, class 3, trans...    29   1.5   
gi|12643346|sp|Q9NQ69|LHX9_HUMAN  LIM/homeobox protein Lhx9        29   1.5   
gi|37999770|sp|Q9BYU1|PBX4_HUMAN  Pre-B-cell leukemia transc...    29   1.5   
gi|20531996|sp|Q8WXK4|AS12_HUMAN  Ankyrin repeat and SOCS bo...    29   1.5   
gi|28201884|sp|P78424|PO6F2_HUMAN  POU domain, class 6, tran...    29   1.5   
gi|2495306|sp|Q14863|PO6F1_HUMAN  POU domain, class 6, trans...    28   2.0   
gi|12643905|sp|Q9UP79|ATS8_HUMAN  ADAMTS-8 precursor (A disi...    28   2.0   
gi|28202258|sp|P20265|PO3F2_HUMAN  POU domain, class 3, tran...    28   2.6   
gi|123408|sp|P28069|PIT1_HUMAN  Pituitary-specific positive ...    28   2.6   
gi|20138948|sp|Q04721|NOTC2_HUMAN  Neurogenic locus notch ho...    28   3.4   
gi|400659|sp|Q01860|PO5F1_HUMAN  POU domain, class 5, transc...    27   4.4   
gi|730052|sp|Q00325|MPCP_HUMAN  Phosphate carrier protein, m...    27   4.4   
gi|28201858|sp|Q06416|PO5L_HUMAN  POU domain, class 5, trans...    27   4.4   
gi|12230578|sp|O95475|SIX6_HUMAN  Homeobox protein SIX6 (Sin...    27   4.4   
gi|28201859|sp|Q9BZV7|PO5M_HUMAN  POU domain, class 5, trans...    27   4.4   
gi|8134548|sp|Q9UPM6|LHX61_HUMAN  LIM/homeobox protein Lhx6....    27   4.4   
gi|1345629|sp|P49335|PO3F4_HUMAN  POU domain, class 3, trans...    27   5.8   
gi|17371773|sp|Q92934|BAD_HUMAN  Bcl2-antagonist of cell dea...    27   5.8   
gi|2506534|sp|P20264|PO33_HUMAN  POU domain, class 3, transc...    27   5.8   
gi|46396941|sp|Q8N196|SIX5_HUMAN  Homeobox protein SIX5 (DM ...    27   5.8   
gi|44889075|sp|Q9H4I2|ZHX3_HUMAN  Zinc fingers and homeoboxe...    27   7.6   
gi|21759444|sp|Q9NSC7|SI7A_HUMAN  Alpha-N-acetylgalactosamin...    27   7.6   
gi|133326|sp|P24928|RPB1_HUMAN  DNA-directed RNA polymerase ...    27   7.6   
gi|17376322|sp|Q14161|GIT2_HUMAN  ARF GTPase-activating prot...    27   7.6   
gi|544357|sp|P35637|FUS_HUMAN  RNA-binding protein FUS (Onco...    27   7.6   
gi|13626594|sp|Q15596|NCOA2_HUMAN  Nuclear receptor coactiva...    27   7.6   
gi|25453452|sp|Q16236|NF2L2_HUMAN  Nuclear factor erythroid ...    27   7.6   
gi|17368438|sp|Q13064|MKR3_HUMAN  Makorin 3 (Zinc finger pro...    27   7.6   
gi|44888551|sp|Q9UKY1|ZHX1_HUMAN  Zinc fingers and homeoboxe...    26   9.9   
gi|13431548|sp|Q92830|GCNL2_HUMAN  General control of amino ...    26   9.9   
gi|38503102|sp|Q8WXU2|DYX1_HUMAN  Dyslexia susceptibility 1 ...    26   9.9   
gi|48428608|sp|Q12789|T3C1_HUMAN  General transcription fact...    26   9.9   


Alignments

>gi|17378385|sp|P31267|HXA6_HUMAN   Homeobox protein Hox-A6 (Hox-1B)
          Length = 233

 Score =  458 bits (1178), Expect = e-130
 Identities = 220/233 (94%), Positives = 220/233 (94%)

Query: 1   MSSYFVNPTFPGSLPSGQDSFLGQLPLYQAGYDALRPFPASYGASSLPDKTYTSPCFYQQ 60
           MSSYFVNPTFPGSLPSGQDSFLGQLPLYQAGYDALRPFPASYGASSLPDKTYTSPCFYQQ
Sbjct: 1   MSSYFVNPTFPGSLPSGQDSFLGQLPLYQAGYDALRPFPASYGASSLPDKTYTSPCFYQQ 60

Query: 61  SNSVLACNRASYEYGASCFYSDKDLSGASPSGSGKQRGPGDYLHFSPEQQYKPDSSSGQG 120
           SNSVLACNRASYEYGASCFYSDKDLSGASPSGSGKQRGPGDYLHFSPEQQYKPDSSSGQG
Sbjct: 61  SNSVLACNRASYEYGASCFYSDKDLSGASPSGSGKQRGPGDYLHFSPEQQYKPDSSSGQG 120

Query: 121 KALHDEGADRKYTSPVYPWMQRMNSCAGAVYGSHXXXXXXXXXXXXXLELEKEFHFNRYL 180
           KALHDEGADRKYTSPVYPWMQRMNSCAGAVYGSH             LELEKEFHFNRYL
Sbjct: 121 KALHDEGADRKYTSPVYPWMQRMNSCAGAVYGSHGRRGRQTYTRYQTLELEKEFHFNRYL 180

Query: 181 TRRRRIEIANALCLTERQIKIWFQNRRMKWKKENKLINSTQPSGEDSEAKAGE 233
           TRRRRIEIANALCLTERQIKIWFQNRRMKWKKENKLINSTQPSGEDSEAKAGE
Sbjct: 181 TRRRRIEIANALCLTERQIKIWFQNRRMKWKKENKLINSTQPSGEDSEAKAGE 233



>gi|13124738|sp|P17509|HXB6_HUMAN   Homeobox protein Hox-B6 (Hox-2B) (Hox-2.2) (HU-2)
          Length = 224

 Score =  209 bits (531), Expect = 8e-55
 Identities = 117/235 (49%), Positives = 149/235 (63%), Gaps = 13/235 (5%)

Query: 1   MSSYFVNPTFPGSLPSGQDSFLGQLPLYQAGY-DALRPFPASYGASSLPDKTYTSPCFYQ 59
           MSSYFVN TFP +L SGQ+SFLG +PLY +GY D LR +PA YG     DK + +  +Y 
Sbjct: 1   MSSYFVNSTFPVTLASGQESFLGHVPLYSSGYADPLRHYPAPYGPGPGQDKGFATSSYYP 60

Query: 60  QSNSVLACNRASYEYG-ASCFYSDKDLSGASPSGSGKQRGPGDYLHFSPEQQYKPDSSSG 118
            +        A  +YG A  FY +K+ S  + SG+ +Q        F PE +    S   
Sbjct: 61  PAGGGYG-RAAPCDYGPAPAFYREKE-SACALSGADEQPP------FHPEPR---KSDCA 109

Query: 119 QGKALHDEGADRKYTSPVYPWMQRMNSCAGAVYGSHXXXXXXXXXXXXXLELEKEFHFNR 178
           Q K++  E  ++K ++PVYPWMQRMNSC  + +G               LELEKEFH+NR
Sbjct: 110 QDKSVFGETEEQKCSTPVYPWMQRMNSCNSSSFGPSGRRGRQTYTRYQTLELEKEFHYNR 169

Query: 179 YLTRRRRIEIANALCLTERQIKIWFQNRRMKWKKENKLINSTQPSGEDSEAKAGE 233
           YLTRRRRIEIA+ALCLTERQIKIWFQNRRMKWKKE+KL++++Q S E+ E K  E
Sbjct: 170 YLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKESKLLSASQLSAEEEEEKQAE 224



>gi|20141493|sp|P09630|HXC6_HUMAN   Homeobox protein Hox-C6 (Hox-3C) (HHO.C8) (CP25)
          Length = 235

 Score =  181 bits (458), Expect = 2e-46
 Identities = 101/229 (44%), Positives = 133/229 (58%), Gaps = 14/229 (6%)

Query: 1   MSSYFVNPTFPGSLPSGQDSFLGQLPLYQAGYDALRPFPASYGASSLPDKTYTSPCFYQQ 60
           M+SYF NP+    L  GQD  L  + L    YD +R F ++YGA+   ++ Y++P +  Q
Sbjct: 1   MNSYFTNPSLSCHLAGGQD-VLPNVALNSTAYDPVRHF-STYGAAVAQNRIYSTPFYSPQ 58

Query: 61  SNSVLACNRASYEYGASCFYSDKDLSGASPSGSGKQRGPGDYLHFSPEQQYKPDSSSGQG 120
            N V + +R  Y+YG++ FY +KD+       +         L  + +     D SS QG
Sbjct: 59  ENVVFSSSRGPYDYGSNSFYQEKDMLSNCRQNT---------LGHNTQTSIAQDFSSEQG 109

Query: 121 KALHDEGADRKYTSPVYPWMQRMNSCAGAVYGSHXXXXXXXXXXXXXLELEKEFHFNRYL 180
           +       D+K +  +YPWMQRMNS +G  YG+              LELEKEFHFNRYL
Sbjct: 110 RTAPQ---DQKASIQIYPWMQRMNSHSGVGYGADRRRGRQIYSRYQTLELEKEFHFNRYL 166

Query: 181 TRRRRIEIANALCLTERQIKIWFQNRRMKWKKENKLINSTQPSGEDSEA 229
           TRRRRIEIANALCLTERQIKIWFQNRRMKWKKE+ L ++    G  + A
Sbjct: 167 TRRRRIEIANALCLTERQIKIWFQNRRMKWKKESNLTSTLSGGGGGATA 215



>gi|52788238|sp|P20719|HXA5_HUMAN   Homeobox protein Hox-A5 (Hox-1C)
          Length = 270

 Score =  115 bits (288), Expect = 1e-26
 Identities = 88/259 (33%), Positives = 117/259 (45%), Gaps = 46/259 (17%)

Query: 1   MSSYFVNPTFPGSLPSG------------------QDSFLGQLPLYQAGYDAL------- 35
           MSSYFVN +F G  P+G                  +DS       Y  GY+ +       
Sbjct: 1   MSSYFVN-SFCGRYPNGPDYQLHNYGDHSSVSEQFRDSASMHSGRYGYGYNGMDLSVGRS 59

Query: 36  -----------RPFPASYGASSLP-DKTYTSPCFYQQSNSV--LACNRASYEYGASCFYS 81
                      R + AS  AS+ P +  Y+ P     S     L C+  +   G+   + 
Sbjct: 60  GSGHFGSGERARSYAAS--ASAAPAEPRYSQPATSTHSPQPDPLPCSAVAPSPGSDSHHG 117

Query: 82  DKDL----SGASPSGSGKQRGPGDYLHFSPEQQYKPDSSSGQGKALHDEGADRKYTSPVY 137
            K+     SGAS           + +  +   +    +SS Q  A  +          +Y
Sbjct: 118 GKNSLSNSSGASADAGSTHISSREGVGTASGAEEDAPASSEQASAQSEPSPAPPAQPQIY 177

Query: 138 PWMQRMNSCAGAVYGSHXXXXXXXXXXXXXLELEKEFHFNRYLTRRRRIEIANALCLTER 197
           PWM++++     + G               LELEKEFHFNRYLTRRRRIEIA+ALCL+ER
Sbjct: 178 PWMRKLHISHDNIGGPEGKRARTAYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLSER 237

Query: 198 QIKIWFQNRRMKWKKENKL 216
           QIKIWFQNRRMKWKK+NKL
Sbjct: 238 QIKIWFQNRRMKWKKDNKL 256



>gi|20141491|sp|P09016|HXD4_HUMAN   Homeobox protein Hox-D4 (Hox-4B) (Hox-5.1) (HHO.C13)
          Length = 255

 Score =  111 bits (278), Expect = 2e-25
 Identities = 90/247 (36%), Positives = 107/247 (43%), Gaps = 35/247 (14%)

Query: 1   MSSYFVN-----PTFPGSLPSGQDSFLGQLPLYQAGYDALRPFPASYGASSLPDKTYTSP 55
           MSSY VN     P FP      Q  +LG+      G  A        GA   P   Y  P
Sbjct: 3   MSSYMVNSKYVDPKFPPCEEYLQGGYLGEQGADYYGGGA-------QGADFQPPGLYPRP 55

Query: 56  CFYQQSNSVLACNRASYEYGASCFYSDKDLS----GASPSG-SGKQRGPGDYLHFSPEQQ 110
            F +Q             +G S       L     G  P G  G    PG+     P   
Sbjct: 56  DFGEQP------------FGGSGPGPGSALPARGHGQEPGGPGGHYAAPGEPCPAPPAPP 103

Query: 111 YKP----DSSSGQGKALHDEGADRKYTSPVYPWMQRM--NSCAGAVYGSHXXXXXXXXXX 164
             P     + S         G   K  + VYPWM+++  NS      G            
Sbjct: 104 PAPLPGARAYSQSDPKQPPSGTALKQPAVVYPWMKKVHVNSVNPNYTGGEPKRSRTAYTR 163

Query: 165 XXXLELEKEFHFNRYLTRRRRIEIANALCLTERQIKIWFQNRRMKWKKENKLINSTQPSG 224
              LELEKEFHFNRYLTRRRRIEIA+ LCL+ERQIKIWFQNRRMKWKK++KL N+   S 
Sbjct: 164 QQVLELEKEFHFNRYLTRRRRIEIAHTLCLSERQIKIWFQNRRMKWKKDHKLPNTKGRSS 223

Query: 225 EDSEAKA 231
             S + +
Sbjct: 224 SSSSSSS 230



>gi|6166217|sp|Q00056|HXA4_HUMAN   Homeobox protein Hox-A4 (Hox-1D) (Hox-1.4)
          Length = 320

 Score =  111 bits (278), Expect = 2e-25
 Identities = 55/99 (55%), Positives = 67/99 (67%), Gaps = 2/99 (2%)

Query: 136 VYPWMQRMNSCA--GAVYGSHXXXXXXXXXXXXXLELEKEFHFNRYLTRRRRIEIANALC 193
           VYPWM++++  A   +  G               LELEKEFHFNRYLTRRRRIEIA+ LC
Sbjct: 194 VYPWMKKIHVSAVNPSYNGGEPKRSRTAYTRQQVLELEKEFHFNRYLTRRRRIEIAHTLC 253

Query: 194 LTERQIKIWFQNRRMKWKKENKLINSTQPSGEDSEAKAG 232
           L+ERQ+KIWFQNRRMKWKK++KL N+   S   + A AG
Sbjct: 254 LSERQVKIWFQNRRMKWKKDHKLPNTKMRSSNSASASAG 292



>gi|400000|sp|P09067|HXB5_HUMAN   Homeobox protein Hox-B5 (Hox-2A) (HHO.C10) (HU-1)
          Length = 269

 Score =  110 bits (276), Expect = 3e-25
 Identities = 92/260 (35%), Positives = 119/260 (45%), Gaps = 49/260 (18%)

Query: 1   MSSYFVNPTFPGSLPSGQDSFLGQLPLYQAGY-------DALRPFPASYG---------- 43
           MSSYFVN +F G  P+G D    QL  Y +G        D       SYG          
Sbjct: 1   MSSYFVN-SFSGRYPNGPDY---QLLNYGSGSSLSGSYRDPAAMHTGSYGYNYNGMDLSV 56

Query: 44  ----ASS-----LPDKTYTSPCFYQQSNSVLACNRASYEYGASCFYSDKDLSGASPSGSG 94
               ASS     + + +   P   Q+     A +  S     S   ++ D  GA PS S 
Sbjct: 57  NRSSASSSHFGAVGESSRAFPAPAQEPRFRQAASSCSLSSPESLPCTNGDSHGAKPSASS 116

Query: 95  ---KQRGPGDYLHFS----------PEQQYKPDSSSGQGKALHDE-----GADRKYTSPV 136
              +        +F+          PE+     SS    +A  +       A    T  +
Sbjct: 117 PSDQATSASSSANFTEIDEASASSEPEEAASQLSSPSLARAQPEPMATSTAAPEGQTPQI 176

Query: 137 YPWMQRMNSCAGAVYGSHXXXXXXXXXXXXXLELEKEFHFNRYLTRRRRIEIANALCLTE 196
           +PWM++++  +  + G               LELEKEFHFNRYLTRRRRIEIA+ALCL+E
Sbjct: 177 FPWMRKLH-ISHDMTGPDGKRARTAYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLSE 235

Query: 197 RQIKIWFQNRRMKWKKENKL 216
           RQIKIWFQNRRMKWKK+NKL
Sbjct: 236 RQIKIWFQNRRMKWKKDNKL 255



>gi|123255|sp|P09629|HXB7_HUMAN   Homeobox protein Hox-B7 (Hox-2C) (HHO.C1)
          Length = 217

 Score =  110 bits (275), Expect = 4e-25
 Identities = 80/215 (37%), Positives = 100/215 (46%), Gaps = 32/215 (14%)

Query: 40  ASYGASSLPDKTYTSPCFYQQSNSVLACNRASYEYGASCFYSDK-DLSGASPSGSGK--Q 96
           + Y ASS     + +  F +Q++   A N     YGA    S    + G  P G G   Q
Sbjct: 12  SKYPASS---SVFATGAFPEQTSCAFASNPQRPGYGAGSGASFAGSMQGLYPGGGGMAGQ 68

Query: 97  RGPGDY------------LHFSPEQQYKP-----DSSSGQG-KALHDEGADRKYTSPVYP 138
              G Y            +H +P +Q        DS+   G K   D     +    +YP
Sbjct: 69  SAAGVYAAGYGLEPSSFNMHCAPFEQNLSGVCPGDSAKAAGAKEQRDSDLAAESNFRIYP 128

Query: 139 WMQRMNSCAGAVYGSHXXXXXXXXXXXXXLELEKEFHFNRYLTRRRRIEIANALCLTERQ 198
           WM+          G+              LELEKEFH+NRYLTRRRRIEIA+ LCLTERQ
Sbjct: 129 WMRSS--------GTDRKRGRQTYTRYQTLELEKEFHYNRYLTRRRRIEIAHTLCLTERQ 180

Query: 199 IKIWFQNRRMKWKKENKLINSTQPSGEDSEAKAGE 233
           IKIWFQNRRMKWKKENK         + +EA+  E
Sbjct: 181 IKIWFQNRRMKWKKENKTAGPGTTGQDRAEAEEEE 215



>gi|547692|sp|P17483|HXB4_HUMAN   Homeobox protein Hox-B4 (Hox-2F) (Hox-2.6)
          Length = 251

 Score =  107 bits (266), Expect = 4e-24
 Identities = 55/99 (55%), Positives = 68/99 (68%), Gaps = 2/99 (2%)

Query: 136 VYPWMQRMN-SCAGAVY-GSHXXXXXXXXXXXXXLELEKEFHFNRYLTRRRRIEIANALC 193
           VYPWM++++ S     Y G               LELEKEFH+NRYLTRRRR+EIA+ALC
Sbjct: 141 VYPWMRKVHVSTVNPNYAGGEPKRSRTAYTRQQVLELEKEFHYNRYLTRRRRVEIAHALC 200

Query: 194 LTERQIKIWFQNRRMKWKKENKLINSTQPSGEDSEAKAG 232
           L+ERQIKIWFQNRRMKWKK++KL N+   SG  + +  G
Sbjct: 201 LSERQIKIWFQNRRMKWKKDHKLPNTKIRSGGAAGSAGG 239



>gi|123279|sp|P09017|HXC4_HUMAN   Homeobox protein Hox-C4 (Hox-3E) (CP19)
          Length = 264

 Score =  106 bits (265), Expect = 6e-24
 Identities = 71/169 (42%), Positives = 88/169 (52%), Gaps = 25/169 (14%)

Query: 80  YSDKDLSGASPSGSGKQRG--PGDYLHFSPEQQY---KPDSSSG-------------QGK 121
           Y ++  S  S  G G  RG  P    H  PE+     +P   SG             Q  
Sbjct: 62  YPERQYSCTSLQGPGNSRGHGPAQAGHHHPEKSQSLCEPAPLSGASASPSPAPPACSQPA 121

Query: 122 ALHDEGADRKYTSPVYPWMQRMN-SCAGAVY-GSHXXXXXXXXXXXXXLELEKEFHFNRY 179
             H   A  K    VYPWM++++ S     Y G               LELEKEFH+NRY
Sbjct: 122 PDHPSSAASKQPI-VYPWMKKIHVSTVNPNYNGGEPKRSRAAYTRQQVLELEKEFHYNRY 180

Query: 180 LTRRRRIEIANALCLTERQIKIWFQNRRMKWKKENKL----INSTQPSG 224
           LTRRRRIEIA++LCL+ERQIKIWFQNRRMKWKK+++L    + S  P+G
Sbjct: 181 LTRRRRIEIAHSLCLSERQIKIWFQNRRMKWKKDHRLPNTKVRSAPPAG 229



>gi|3915721|sp|P31268|HXA7_HUMAN   Homeobox protein Hox-A7 (Hox-1A) (Hox 1.1)
          Length = 230

 Score =  103 bits (258), Expect = 4e-23
 Identities = 80/197 (40%), Positives = 95/197 (48%), Gaps = 30/197 (15%)

Query: 40  ASYGASSLPDKTYTSPCFYQQSNSVLACN------RASYEYGASCF-------YSDKDLS 86
           +SY  ++L  K YT+     Q+    +C+      R+ Y  GA  F       Y+     
Sbjct: 3   SSYYVNALFSK-YTAGTSLFQNAEPTSCSFAPNSQRSGYGAGAGAFASTVPGLYNVNSPL 61

Query: 87  GASPSGSGKQRGPGDY--LHFSPEQQYKPDSSSGQGKAL---HDEGA---DRKYTSPVYP 138
             SP  SG   G   Y  L  +   Q  P   S   K      DEGA     +    +YP
Sbjct: 62  YQSPFASGYGLGADAYGNLPCASYDQNIPGLCSDLAKGACDKTDEGALHGAAEANFRIYP 121

Query: 139 WMQRMNSCAGAVYGSHXXXXXXXXXXXXXLELEKEFHFNRYLTRRRRIEIANALCLTERQ 198
           WM+          G               LELEKEFHFNRYLTRRRRIEIA+ALCLTERQ
Sbjct: 122 WMRSS--------GPDRKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQ 173

Query: 199 IKIWFQNRRMKWKKENK 215
           IKIWFQNRRMKWKKE+K
Sbjct: 174 IKIWFQNRRMKWKKEHK 190



>gi|232262|sp|Q00444|HXC5_HUMAN   Homeobox protein Hox-C5 (Hox-3D) (CP11)
          Length = 222

 Score =  101 bits (252), Expect = 2e-22
 Identities = 48/81 (59%), Positives = 57/81 (70%), Gaps = 4/81 (4%)

Query: 136 VYPWMQRMNSCAGAVYGSHXXXXXXXXXXXXXLELEKEFHFNRYLTRRRRIEIANALCLT 195
           +YPWM +++      + +              LELEKEFHFNRYLTRRRRIEIAN LCL 
Sbjct: 140 IYPWMTKLHMS----HETDGKRSRTSYTRYQTLELEKEFHFNRYLTRRRRIEIANNLCLN 195

Query: 196 ERQIKIWFQNRRMKWKKENKL 216
           ERQIKIWFQNRRMKWKK++K+
Sbjct: 196 ERQIKIWFQNRRMKWKKDSKM 216



>gi|6166222|sp|P31249|HXD3_HUMAN   Homeobox protein Hox-D3 (Hox-4A)
          Length = 416

 Score = 98.6 bits (244), Expect = 2e-21
 Identities = 74/210 (35%), Positives = 92/210 (43%), Gaps = 33/210 (15%)

Query: 36  RPFPASYGASSLPDKTYTSPCFYQQSNSVLACNRASYEYGASCFYSDKDLSGASPSGSGK 95
           +P+P    ASSL      S C  Q S  + A      E   SC    +  +G S  G G 
Sbjct: 32  QPYPPPAAASSLDTDYPGSACSIQSSAPLRAPAHKGAELNGSCM---RPGTGNSQGGGGG 88

Query: 96  QRGPGDYLHFSPEQQ---------YKPDSSSGQGKALHDEGADRKYTSP------VYPWM 140
            + PG      P Q            P +  G   A   +G     +S       ++PWM
Sbjct: 89  SQPPGLNSEQQPPQPPPPPPTLPPSSPTNPGGGVPAKKPKGGPNASSSSATISKQIFPWM 148

Query: 141 Q-------RMNSCAGAVY--------GSHXXXXXXXXXXXXXLELEKEFHFNRYLTRRRR 185
           +       + NSCA A          G               +ELEKEFHFNRYL R RR
Sbjct: 149 KESRQNSKQKNSCATAGESCEDKSPPGPASKRVRTAYTSAQLVELEKEFHFNRYLCRPRR 208

Query: 186 IEIANALCLTERQIKIWFQNRRMKWKKENK 215
           +E+AN L LTERQIKIWFQNRRMK+KK+ K
Sbjct: 209 VEMANLLNLTERQIKIWFQNRRMKYKKDQK 238



>gi|13124745|sp|P31273|HXC8_HUMAN   Homeobox protein Hox-C8 (Hox-3A)
          Length = 242

 Score = 95.9 bits (237), Expect = 1e-20
 Identities = 86/257 (33%), Positives = 116/257 (45%), Gaps = 57/257 (22%)

Query: 1   MSSYFVNPTFPGSLPSGQDSFLGQLPLYQAGYDALRPFPASYGAS---------SLPDKT 51
           MSSYFVNP F     +G+        L  A YD    FP S G S         S P   
Sbjct: 1   MSSYFVNPLF-SKYKAGES-------LEPAYYDC--RFPQSVGRSHALVYGPGGSAPGFQ 50

Query: 52  YT---------------SPCFYQQSNSVLACNRASYEYGASCFYSDKDLSGASPSGSGKQ 96
           +                S   YQQ+   L+C+       AS FY  + L   S  G+ ++
Sbjct: 51  HASHHVQDFFHHGTSGISNSGYQQNPCSLSCHG-----DASKFYGYEALPRQSLYGAQQE 105

Query: 97  RGPGDYLHFSPEQQYKPDSSSGQGKALHDEGADRKYTSPVYPWMQRMNSCAGAVYGSHXX 156
                Y    P+ +   +++S +G+   ++ +     S ++PWM+         +     
Sbjct: 106 ASVVQY----PDCKSSANTNSSEGQGHLNQNSS---PSLMFPWMR--------PHAPGRR 150

Query: 157 XXXXXXXXXXXLELEKEFHFNRYLTRRRRIEIANALCLTERQIKIWFQNRRMKWKKENKL 216
                      LELEKEF FN YLTR+RRIE+++AL LTERQ+KIWFQNRRMKWKKEN  
Sbjct: 151 SGRQTYSRYQTLELEKEFLFNPYLTRKRRIEVSHALGLTERQVKIWFQNRRMKWKKEN-- 208

Query: 217 INSTQPSGEDSEAKAGE 233
            N  +  G   E K  E
Sbjct: 209 -NKDKLPGARDEEKVEE 224



>gi|13124737|sp|P13378|HXD8_HUMAN   Homeobox protein Hox-D8 (Hox-4E) (Hox-5.4)
          Length = 290

 Score = 92.4 bits (228), Expect = 1e-19
 Identities = 57/123 (46%), Positives = 68/123 (55%), Gaps = 12/123 (9%)

Query: 113 PDSSSGQGKALHDEGADRKYTSP--VYPWMQRMNSCAGAVYGSHXXXXXXXXXXXXXLEL 170
           PD  S  G    D     + +SP  ++PWM R  +  G   G               LEL
Sbjct: 160 PDCKSSSGNIGEDPDHLNQSSSPSQMFPWM-RPQAAPGRRRGRQTYSRFQT------LEL 212

Query: 171 EKEFHFNRYLTRRRRIEIANALCLTERQIKIWFQNRRMKWKKENKLINSTQPSGEDSEAK 230
           EKEF FN YLTR+RRIE+++AL LTERQ+KIWFQNRRMKWKKEN   N  +      E K
Sbjct: 213 EKEFLFNPYLTRKRRIEVSHALALTERQVKIWFQNRRMKWKKEN---NKDKFPVSRQEVK 269

Query: 231 AGE 233
            GE
Sbjct: 270 DGE 272



>gi|20141506|sp|P17481|HXB8_HUMAN   Homeobox protein Hox-B8 (Hox-2D) (Hox-2.4)
          Length = 243

 Score = 92.0 bits (227), Expect = 1e-19
 Identities = 85/232 (36%), Positives = 112/232 (48%), Gaps = 45/232 (19%)

Query: 1   MSSYFVNPTF----------PGSLPSGQDSFLGQLPLYQAGYDALRPF--PAS-----YG 43
           MSSYFVN  F          P     G    LG  P    G  +   F  P+      +G
Sbjct: 1   MSSYFVNSLFSKYKTGESLRPNYYDCGFAQDLGGRPTVVYGPSSGGSFQHPSQIQEFYHG 60

Query: 44  ASSLPDKTYTSPCFYQQSNSVLACNRASYEYGASCFYSDKDLSGASPSGSGKQRGPGDYL 103
            SSL     T+P  YQQ+   +AC+          FY    L   S  G+       D +
Sbjct: 61  PSSLS----TAP--YQQNPCAVACHG-----DPGNFYGYDPLQRQSLFGAQDP----DLV 105

Query: 104 HFSPEQQYKPDSSSGQGKALHDEGADRKYT-SPVYPWMQRMNSCAGAVYGSHXXXXXXXX 162
            ++     K  ++SG G+    EG+++  + + ++PWM R  + AG   G          
Sbjct: 106 QYA---DCKLAAASGLGEEA--EGSEQSPSPTQLFPWM-RPQAAAGRRRGRQTYSRYQT- 158

Query: 163 XXXXXLELEKEFHFNRYLTRRRRIEIANALCLTERQIKIWFQNRRMKWKKEN 214
                LELEKEF FN YLTR+RRIE+++AL LTERQ+KIWFQNRRMKWKKEN
Sbjct: 159 -----LELEKEFLFNPYLTRKRRIEVSHALGLTERQVKIWFQNRRMKWKKEN 205



>gi|6016293|sp|O43365|HXA3_HUMAN   Homeobox protein Hox-A3 (Hox-1E)
          Length = 443

 Score = 84.3 bits (207), Expect = 3e-17
 Identities = 52/113 (46%), Positives = 63/113 (55%), Gaps = 17/113 (15%)

Query: 136 VYPWMQ--RMN------------SCAG--AVYGSHXXXXXXXXXXXXXL-ELEKEFHFNR 178
           ++PWM+  R N            SCAG  +  G               L ELEKEFHFNR
Sbjct: 155 IFPWMKESRQNTKQKTSSSSSGESCAGDKSPPGQASSKRARTAYTSAQLVELEKEFHFNR 214

Query: 179 YLTRRRRIEIANALCLTERQIKIWFQNRRMKWKKENKLINSTQPSGEDSEAKA 231
           YL R RR+E+AN L LTERQIKIWFQNRRMK+KK+ K       SG  S +++
Sbjct: 215 YLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKDQKGKGMLTSSGGQSPSRS 267



>gi|20141537|sp|P31274|HXC9_HUMAN   Homeobox protein Hox-C9 (Hox-3B)
          Length = 260

 Score = 84.0 bits (206), Expect = 4e-17
 Identities = 51/121 (42%), Positives = 64/121 (52%), Gaps = 18/121 (14%)

Query: 99  PGDYLHFSPEQQYKPDSSSGQGKALHDEGADRKYTSPVYPWMQ----RMNSCAGAVYGSH 154
           PG+    +P+    P++ +  G    +E AD   ++PV  W+     R   C    Y + 
Sbjct: 146 PGELRDRAPQTLPSPEADALAGSKHKEEKADLDPSNPVANWIHARSTRKKRCPYTKYQT- 204

Query: 155 XXXXXXXXXXXXXLELEKEFHFNRYLTRRRRIEIANALCLTERQIKIWFQNRRMKWKKEN 214
                        LELEKEF FN YLTR RR E+A  L LTERQ+KIWFQNRRMK KK N
Sbjct: 205 -------------LELEKEFLFNMYLTRDRRYEVARVLNLTERQVKIWFQNRRMKMKKMN 251

Query: 215 K 215
           K
Sbjct: 252 K 252



>gi|123268|sp|P14651|HXB3_HUMAN   Homeobox protein Hox-B3 (Hox-2G) (Hox-2.7)
          Length = 431

 Score = 83.6 bits (205), Expect = 5e-17
 Identities = 41/62 (66%), Positives = 47/62 (75%)

Query: 168 LELEKEFHFNRYLTRRRRIEIANALCLTERQIKIWFQNRRMKWKKENKLINSTQPSGEDS 227
           +ELEKEFHFNRYL R RR+E+AN L L+ERQIKIWFQNRRMK+KK+ K       SG  S
Sbjct: 201 VELEKEFHFNRYLCRPRRVEMANLLNLSERQIKIWFQNRRMKYKKDQKAKGLASSSGGPS 260

Query: 228 EA 229
            A
Sbjct: 261 PA 262



>gi|123286|sp|P28356|HXD9_HUMAN   Homeobox protein Hox-D9 (Hox-4C) (Hox-5.2)
          Length = 342

 Score = 79.7 bits (195), Expect = 8e-16
 Identities = 60/181 (33%), Positives = 84/181 (46%), Gaps = 5/181 (2%)

Query: 37  PFPASYGASSLPDKTYTSPCFYQQSNSVLACNRASY--EYGASCFYSDKDLSGASPSGSG 94
           P PA+  +++    T  S    +   SV   ++ S   E+  + F  +K   G   +G G
Sbjct: 158 PAPATAASTTSSSSTSLSSSSKRTECSVARESQGSSGPEFSCNSFLQEKAAGGDGGNGPG 217

Query: 95  KQRGPGDYLHFSPEQQYKPDSSSGQGKALHDEGADRKYTSPVYPWMQRMNSCAGAVYGSH 154
              G       S E     D     G +L +E  +++++ P    +   N  A  ++   
Sbjct: 218 AGIGAATGTGGSSEPSACSDHPI-PGCSLKEE--EKQHSQPQQQQLDPNNPEANWIHARS 274

Query: 155 XXXXXXXXXXXXXLELEKEFHFNRYLTRRRRIEIANALCLTERQIKIWFQNRRMKWKKEN 214
                        LELEKEF FN YLTR RR E+A  L LTERQ+KIWFQNRRMK KK +
Sbjct: 275 TRKKRCPYTKYQTLELEKEFLFNMYLTRDRRYEVARILNLTERQVKIWFQNRRMKMKKMS 334

Query: 215 K 215
           K
Sbjct: 335 K 335



>gi|6166216|sp|P49639|HXA1_HUMAN   Homeobox protein Hox-A1 (Hox-1F)
          Length = 335

 Score = 79.0 bits (193), Expect = 1e-15
 Identities = 40/66 (60%), Positives = 47/66 (71%), Gaps = 4/66 (6%)

Query: 169 ELEKEFHFNRYLTRRRRIEIANALCLTERQIKIWFQNRRMKWKKENK----LINSTQPSG 224
           ELEKEFHFN+YLTR RR+EIA +L L E Q+KIWFQNRRMK KK  K     I+   P G
Sbjct: 243 ELEKEFHFNKYLTRARRVEIAASLQLNETQVKIWFQNRRMKQKKREKEGLLPISPATPPG 302

Query: 225 EDSEAK 230
            D +A+
Sbjct: 303 NDEKAE 308



>gi|6016292|sp|O43364|HXA2_HUMAN   Homeobox protein Hox-A2
          Length = 376

 Score = 77.8 bits (190), Expect = 3e-15
 Identities = 42/66 (63%), Positives = 47/66 (71%), Gaps = 5/66 (7%)

Query: 168 LELEKEFHFNRYLTRRRRIEIANALCLTERQIKIWFQNRRMKWK-----KENKLINSTQP 222
           LELEKEFHFN+YL R RR+EIA  L LTERQ+K+WFQNRRMK K     KEN+       
Sbjct: 156 LELEKEFHFNKYLCRPRRVEIAALLDLTERQVKVWFQNRRMKHKRQTQCKENQNSEGKCK 215

Query: 223 SGEDSE 228
           S EDSE
Sbjct: 216 SLEDSE 221



>gi|1708540|sp|P52945|IPF1_HUMAN   Insulin promoter factor-1 (IPF-1) (Pancreas/duodenum homeobox-1)
           (PDX-1) (Islet/duodenum homeobox-1) (IDX-1)
           (Somatostatin transactivating factor-1) (STF-1) (Insulin
           upstream factor-1) (IUF-1) (Glucose-sensitive factor)
           (GSF)
          Length = 283

 Score = 77.0 bits (188), Expect = 5e-15
 Identities = 41/86 (47%), Positives = 50/86 (58%), Gaps = 9/86 (10%)

Query: 137 YPWMQRMNS------CAGAVYGSH---XXXXXXXXXXXXXLELEKEFHFNRYLTRRRRIE 187
           +PWM+   +       AG  Y +                 LELEKEF FN+Y++R RR+E
Sbjct: 119 FPWMKSTKAHAWKGQWAGGAYAAEPEENKRTRTAYTRAQLLELEKEFLFNKYISRPRRVE 178

Query: 188 IANALCLTERQIKIWFQNRRMKWKKE 213
           +A  L LTER IKIWFQNRRMKWKKE
Sbjct: 179 LAVMLNLTERHIKIWFQNRRMKWKKE 204



>gi|6166219|sp|P31269|HXA9_HUMAN   Homeobox protein Hox-A9 (Hox-1G)
          Length = 272

 Score = 76.6 bits (187), Expect = 6e-15
 Identities = 49/118 (41%), Positives = 58/118 (49%), Gaps = 10/118 (8%)

Query: 101 DYLHFSPEQQYKPDSSSG---QGKALHDEGADRKYTSPVYPWMQRMNSCAGAVYGSHXXX 157
           DY   SP    +   S G   +  A ++ G D+    P        N  A  ++      
Sbjct: 156 DYACGSPPVDREKQPSEGAFSENNAENESGGDKPPIDP-------NNPAANWLHARSTRK 208

Query: 158 XXXXXXXXXXLELEKEFHFNRYLTRRRRIEIANALCLTERQIKIWFQNRRMKWKKENK 215
                     LELEKEF FN YLTR RR E+A  L LTERQ+KIWFQNRRMK KK NK
Sbjct: 209 KRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKINK 266



>gi|123270|sp|P14652|HXB2_HUMAN   Homeobox protein Hox-B2 (Hox-2H) (Hox-2.8) (K8)
          Length = 356

 Score = 76.6 bits (187), Expect = 6e-15
 Identities = 37/58 (63%), Positives = 45/58 (77%), Gaps = 2/58 (3%)

Query: 168 LELEKEFHFNRYLTRRRRIEIANALCLTERQIKIWFQNRRMKWKKENKLINSTQPSGE 225
           LELEKEFHFN+YL R RR+EIA  L LTERQ+K+WFQNRRMK K++ +  +   P GE
Sbjct: 156 LELEKEFHFNKYLCRPRRVEIAALLDLTERQVKVWFQNRRMKHKRQTQ--HREPPDGE 211



>gi|17378648|sp|Q9GZZ0|HXD1_HUMAN   Homeobox protein Hox-D1
          Length = 328

 Score = 76.3 bits (186), Expect = 8e-15
 Identities = 35/47 (74%), Positives = 39/47 (82%)

Query: 169 ELEKEFHFNRYLTRRRRIEIANALCLTERQIKIWFQNRRMKWKKENK 215
           ELEKEFHFN+YLTR RRIEIAN L L + Q+KIWFQNRRMK KK  +
Sbjct: 243 ELEKEFHFNKYLTRARRIEIANCLHLNDTQVKIWFQNRRMKQKKRER 289



>gi|1345720|sp|P47902|CDX1_HUMAN   Homeobox protein CDX-1 (Caudal-type homeobox protein 1)
          Length = 265

 Score = 75.5 bits (184), Expect = 1e-14
 Identities = 64/190 (33%), Positives = 80/190 (42%), Gaps = 15/190 (7%)

Query: 39  PASYGASSLPDKTYTSPCFYQQSNSVLACNRASYEYGASCFYSDKDLSGASPSGSGKQRG 98
           PA+YG  + P      P F   S+ V         +GA       D + A   G      
Sbjct: 27  PANYGPPAPPPAPPQYPDFSSYSH-VEPAPAPPTAWGAPFPAPKDDWAAAYGPGPAAPAA 85

Query: 99  PGDYLHFSPEQQYKP---DSSSGQGKALHDEGADRKYTSP------VYPWMQRMNSCAGA 149
               L F P   + P       G G      G     +SP       Y WM+R +  AG 
Sbjct: 86  SPASLAFGPPPDFSPVPAPPGPGPGLLAQPLGGPGTPSSPGAQRPTPYEWMRR-SVAAGG 144

Query: 150 VYGSHXXXXXXXXXXXXX----LELEKEFHFNRYLTRRRRIEIANALCLTERQIKIWFQN 205
             GS                  LELEKEFH++RY+T RR+ E+A  L LTERQ+KIWFQN
Sbjct: 145 GGGSGKTRTKDKYRVVYTDHQRLELEKEFHYSRYITIRRKSELAANLGLTERQVKIWFQN 204

Query: 206 RRMKWKKENK 215
           RR K +K NK
Sbjct: 205 RRAKERKVNK 214



>gi|20141612|sp|Q9NYD6|HXC10_HUMAN   Homeobox protein Hox-C10
          Length = 342

 Score = 73.6 bits (179), Expect = 5e-14
 Identities = 34/48 (70%), Positives = 40/48 (83%)

Query: 168 LELEKEFHFNRYLTRRRRIEIANALCLTERQIKIWFQNRRMKWKKENK 215
           LELEKEF FN YLTR RR+EI+  + LT+RQ+KIWFQNRRMK KK N+
Sbjct: 281 LELEKEFLFNMYLTRERRLEISKTINLTDRQVKIWFQNRRMKLKKMNR 328



>gi|13124743|sp|P31260|HXA10_HUMAN   Homeobox protein Hox-A10 (Hox-1H) (Hox-1.8) (PL)
          Length = 393

 Score = 73.6 bits (179), Expect = 5e-14
 Identities = 34/48 (70%), Positives = 41/48 (85%)

Query: 168 LELEKEFHFNRYLTRRRRIEIANALCLTERQIKIWFQNRRMKWKKENK 215
           LELEKEF FN YLTR RR+EI+ ++ LT+RQ+KIWFQNRRMK KK N+
Sbjct: 332 LELEKEFLFNMYLTRERRLEISRSVHLTDRQVKIWFQNRRMKLKKMNR 379



>gi|20141507|sp|P17482|HXB9_HUMAN   Homeobox protein Hox-B9 (Hox-2E) (Hox-2.5)
          Length = 250

 Score = 73.2 bits (178), Expect = 7e-14
 Identities = 36/48 (75%), Positives = 39/48 (81%)

Query: 168 LELEKEFHFNRYLTRRRRIEIANALCLTERQIKIWFQNRRMKWKKENK 215
           LELEKEF FN YLTR RR E+A  L L+ERQ+KIWFQNRRMK KK NK
Sbjct: 198 LELEKEFLFNMYLTRDRRHEVARLLNLSERQVKIWFQNRRMKMKKMNK 245



>gi|123271|sp|P14653|HXB1_HUMAN   Homeobox protein Hox-B1 (Hox-2I)
          Length = 301

 Score = 72.0 bits (175), Expect = 2e-13
 Identities = 33/47 (70%), Positives = 38/47 (80%)

Query: 169 ELEKEFHFNRYLTRRRRIEIANALCLTERQIKIWFQNRRMKWKKENK 215
           ELEKEFHFN+YL+R RR+EIA  L L E Q+KIWFQNRRMK KK  +
Sbjct: 217 ELEKEFHFNKYLSRARRVEIAATLELNETQVKIWFQNRRMKQKKRER 263



>gi|123289|sp|P28358|HXD10_HUMAN   Homeobox protein Hox-D10 (Hox-4D) (Hox-4E)
          Length = 340

 Score = 71.6 bits (174), Expect = 2e-13
 Identities = 33/48 (68%), Positives = 41/48 (85%)

Query: 168 LELEKEFHFNRYLTRRRRIEIANALCLTERQIKIWFQNRRMKWKKENK 215
           LELEKEF FN YLTR RR+EI+ ++ LT+RQ+KIWFQNRRMK KK ++
Sbjct: 279 LELEKEFLFNMYLTRERRLEISKSVNLTDRQVKIWFQNRRMKLKKMSR 326



>gi|45644931|sp|P50219|HLXB9_HUMAN   Homeobox protein HB9
          Length = 403

 Score = 71.6 bits (174), Expect = 2e-13
 Identities = 32/65 (49%), Positives = 47/65 (72%), Gaps = 3/65 (4%)

Query: 168 LELEKEFHFNRYLTRRRRIEIANALCLTERQIKIWFQNRRMKWKKENKLINSTQPSGEDS 227
           LELE +F  N+YL+R +R E+A +L LTE Q+KIWFQNRRMKWK+  K   + + + +++
Sbjct: 256 LELEHQFKLNKYLSRPKRFEVATSLMLTETQVKIWFQNRRMKWKRSKK---AKEQAAQEA 312

Query: 228 EAKAG 232
           E + G
Sbjct: 313 EKQKG 317



>gi|20141282|sp|Q99626|CDX2_HUMAN   Homeobox protein CDX-2 (Caudal-type homeobox protein 2) (CDX-3)
          Length = 313

 Score = 70.9 bits (172), Expect = 4e-13
 Identities = 62/198 (31%), Positives = 84/198 (42%), Gaps = 36/198 (18%)

Query: 38  FPASYGASSLPDKTYTSPCFYQQSNSVLACNRASYEYGASCFYSDKDLSGASPSGSGKQR 97
           +PA+YGA    D    +P       +  A N  ++            L+G SP+ +    
Sbjct: 65  WPAAYGAPLREDWNGYAP-----GGAAAAANAVAH-----------GLNGGSPAAAMGYS 108

Query: 98  GPGDYL------HFSPEQQYKPDSSSGQGKALHDEGADRKYTSP---VYPWMQRMNSC-- 146
            P DY       H        P  +SG  + L+        T+    + P  QR N C  
Sbjct: 109 SPADYHPHHHPHHHPHHPAAAPSCASGLLQTLNPGPPGPAATAAAEQLSPGGQRRNLCEW 168

Query: 147 ----AGAVYGSHXXXXXXXX-----XXXXXLELEKEFHFNRYLTRRRRIEIANALCLTER 197
               A    GS                   LELEKEFH++RY+T RR+ E+A  L L+ER
Sbjct: 169 MRKPAQQSLGSQVKTRTKDKYRVVYTDHQRLELEKEFHYSRYITIRRKAELAATLGLSER 228

Query: 198 QIKIWFQNRRMKWKKENK 215
           Q+KIWFQNRR K +K NK
Sbjct: 229 QVKIWFQNRRAKERKINK 246



>gi|12644203|sp|P31277|HXD11_HUMAN   Homeobox protein Hox-D11 (Hox-4F)
          Length = 338

 Score = 68.6 bits (166), Expect = 2e-12
 Identities = 38/102 (37%), Positives = 52/102 (50%), Gaps = 14/102 (13%)

Query: 114 DSSSGQGKALHDEGADRKYTSPVYPWMQRMNSCAGAVYGSHXXXXXXXXXXXXXLELEKE 173
           + S G G+    E    K +S V P   R   C    Y                 ELE+E
Sbjct: 239 EGSGGDGEGPPGEAGAEKSSSAVAPQRSRKKRCPYTKYQIR--------------ELERE 284

Query: 174 FHFNRYLTRRRRIEIANALCLTERQIKIWFQNRRMKWKKENK 215
           F FN Y+ + +R++++  L LT+RQ+KIWFQNRRMK KK N+
Sbjct: 285 FFFNVYINKEKRLQLSRMLNLTDRQVKIWFQNRRMKEKKLNR 326



>gi|20138327|sp|Q9BZM3|GSH2_HUMAN   Homeobox protein GSH-2
          Length = 304

 Score = 68.2 bits (165), Expect = 2e-12
 Identities = 33/48 (68%), Positives = 39/48 (81%)

Query: 168 LELEKEFHFNRYLTRRRRIEIANALCLTERQIKIWFQNRRMKWKKENK 215
           LELE+EF  N YL+R RRIEIA  L L+E+Q+KIWFQNRR+K KKE K
Sbjct: 215 LELEREFSSNMYLSRLRRIEIATYLNLSEKQVKIWFQNRRVKHKKEGK 262



>gi|27923786|sp|Q9H4S2|GSHI_HUMAN   Homeobox protein GSH-1
          Length = 264

 Score = 67.8 bits (164), Expect = 3e-12
 Identities = 33/48 (68%), Positives = 39/48 (81%)

Query: 168 LELEKEFHFNRYLTRRRRIEIANALCLTERQIKIWFQNRRMKWKKENK 215
           LELE+EF  N YL+R RRIEIA  L L+E+Q+KIWFQNRR+K KKE K
Sbjct: 160 LELEREFASNMYLSRLRRIEIATYLNLSEKQVKIWFQNRRVKHKKEGK 207



>gi|1709079|sp|P50222|MEOX2_HUMAN   Homeobox protein MOX-2 (Mesenchyme homeobox 2) (Growth
           arrest-specific homeobox)
          Length = 303

 Score = 67.4 bits (163), Expect = 4e-12
 Identities = 45/132 (34%), Positives = 59/132 (44%), Gaps = 17/132 (12%)

Query: 81  SDKDLSGASPSGSGKQRGPGDYLHFSPEQQYKPDSSSGQGKALHDEGADRKYTSPVYPWM 140
           +   L  ++P+G+     PGDY   +         S G+ K+   +  +  Y S V    
Sbjct: 129 NSSSLGSSTPTGAAC--APGDYGRQALSPAEAEKRSGGKRKSDSSDSQEGNYKSEV---- 182

Query: 141 QRMNSCAGAVYGSHXXXXXXXXXXXXXLELEKEFHFNRYLTRRRRIEIANALCLTERQIK 200
                       S               ELE EF  + YLTR RR EIA  L LTERQ+K
Sbjct: 183 -----------NSKPRKERTAFTKEQIRELEAEFAHHNYLTRLRRYEIAVNLDLTERQVK 231

Query: 201 IWFQNRRMKWKK 212
           +WFQNRRMKWK+
Sbjct: 232 VWFQNRRMKWKR 243



>gi|1709078|sp|P50221|MEOX1_HUMAN   Homeobox protein MOX-1 (Mesenchyme homeobox 1)
          Length = 254

 Score = 67.4 bits (163), Expect = 4e-12
 Identities = 35/60 (58%), Positives = 42/60 (70%), Gaps = 1/60 (1%)

Query: 169 ELEKEFHFNRYLTRRRRIEIANALCLTERQIKIWFQNRRMKWKKENKLINSTQPSGEDSE 228
           ELE EF  + YLTR RR EIA  L L+ERQ+K+WFQNRRMKWK+  K      P+G+D E
Sbjct: 185 ELEAEFAHHNYLTRLRRYEIAVNLDLSERQVKVWFQNRRMKWKRV-KGGQPISPNGQDPE 243



>gi|12644308|sp|P52951|GBX2_HUMAN   Homeobox protein GBX-2 (Gastrulation and brain-specific homeobox
           protein 2)
          Length = 348

 Score = 66.6 bits (161), Expect = 7e-12
 Identities = 34/60 (56%), Positives = 43/60 (71%), Gaps = 1/60 (1%)

Query: 168 LELEKEFHFNRYLTRRRRIEIANALCLTERQIKIWFQNRRMKWKKENKLINSTQPSGEDS 227
           LELEKEFH  +YL+   R +IA+AL L+E Q+KIWFQNRR KWK+  K  N+   +GE S
Sbjct: 260 LELEKEFHCKKYLSLTERSQIAHALKLSEVQVKIWFQNRRAKWKRV-KAGNANSKTGEPS 318



>gi|12230077|sp|Q14549|GBX1_HUMAN   Homeobox protein GBX-1 (Gastrulation and brain-specific homeobox
           protein 1)
          Length = 139

 Score = 65.1 bits (157), Expect = 2e-11
 Identities = 34/58 (58%), Positives = 42/58 (72%), Gaps = 1/58 (1%)

Query: 168 LELEKEFHFNRYLTRRRRIEIANALCLTERQIKIWFQNRRMKWKKENKLINSTQPSGE 225
           LELEKEFH  +YL+   R +IA+AL L+E Q+KIWFQNRR KWK+  K  N +  SGE
Sbjct: 50  LELEKEFHCKKYLSLTERSQIAHALKLSEVQVKIWFQNRRAKWKR-IKAGNVSSRSGE 106



>gi|3023467|sp|O14627|CDX4_HUMAN   Homeobox protein CDX-4 (Caudal-type homeobox protein 4)
          Length = 284

 Score = 64.7 bits (156), Expect = 3e-11
 Identities = 55/155 (35%), Positives = 69/155 (44%), Gaps = 29/155 (18%)

Query: 80  YSDKDLSGASPSGSGKQRGPGDYLHFSPEQQYKPDSSSGQGKALHDEGADRKYTSPVYPW 139
           +   D S   P G G     G  L         P + +G  KA       R   SP Y W
Sbjct: 108 FCSTDYSNLGPVGGGTS---GSSLPGQAGGSLVP-TDAGAAKA---SSPSRSRHSP-YAW 159

Query: 140 MQRMNSCAG---------AVYGSHXXXXXXXXXXXXXLELEKEFHFNRYLTRRRRIEIAN 190
           M++     G          VY  H             LELEKEFH NRY+T +R+ E+A 
Sbjct: 160 MRKTVQVTGKTRTKEKYRVVYTDHQR-----------LELEKEFHCNRYITIQRKSELAV 208

Query: 191 ALCLTERQIKIWFQNRRMKWKKE-NKLINSTQPSG 224
            L L+ERQ+KIWFQNRR K +K   K I+  + SG
Sbjct: 209 NLGLSERQVKIWFQNRRAKERKMIKKKISQFENSG 243



>gi|3287858|sp|O43248|HXC11_HUMAN   Homeobox protein Hox-C11
          Length = 304

 Score = 62.4 bits (150), Expect = 1e-10
 Identities = 55/187 (29%), Positives = 80/187 (42%), Gaps = 32/187 (17%)

Query: 41  SYGASSLPDKTYTSPC-FYQQSNSVLACNRASYEYGASCFYSDKDLSGASP-SGSGKQRG 98
           SYG    P   + +P  FY   N      +A   +  + +    D     P SG G+ +G
Sbjct: 120 SYGGHHHPSAPHATPAGFYSSVNKNSVLPQAFDRFFDNAYCGGGDPPAEPPCSGKGEAKG 179

Query: 99  -----PGDYL--------HFSPEQQYKPDSSSGQGKALHDEGADRKYTSPVYPWMQRMNS 145
                P   L            E++    SSSG   ++  E A  K  +P  P   R   
Sbjct: 180 EPEAPPASGLASRAEAGAEAEAEEENTNPSSSGSAHSVAKEPA--KGAAPNAP-RTRKKR 236

Query: 146 CAGAVYGSHXXXXXXXXXXXXXLELEKEFHFNRYLTRRRRIEIANALCLTERQIKIWFQN 205
           C  + +                 ELE+EF FN Y+ + +R++++  L LT+RQ+KIWFQN
Sbjct: 237 CPYSKFQIR--------------ELEREFFFNVYINKEKRLQLSRMLNLTDRQVKIWFQN 282

Query: 206 RRMKWKK 212
           RRMK KK
Sbjct: 283 RRMKEKK 289



>gi|13124744|sp|P31270|HXA11_HUMAN   Homeobox protein Hox-A11 (Hox-1I)
          Length = 313

 Score = 61.6 bits (148), Expect = 2e-10
 Identities = 26/47 (55%), Positives = 38/47 (80%)

Query: 169 ELEKEFHFNRYLTRRRRIEIANALCLTERQIKIWFQNRRMKWKKENK 215
           ELE+EF F+ Y+ + +R++++  L LT+RQ+KIWFQNRRMK KK N+
Sbjct: 255 ELEREFFFSVYINKEKRLQLSRMLNLTDRQVKIWFQNRRMKEKKINR 301



>gi|6016211|sp|P78426|NK61_HUMAN   Homeobox protein Nkx-6.1
          Length = 367

 Score = 59.7 bits (143), Expect = 8e-10
 Identities = 35/112 (31%), Positives = 50/112 (44%), Gaps = 25/112 (22%)

Query: 119 QGKALHDEGADRKYTSPVYPWMQRMNSCAGAVYGSHXXXXXXXXXXXXXLELEKEFHFNR 178
           QG  L D+   RK+T P +   Q                            LEK F   +
Sbjct: 225 QGSILLDKDGKRKHTRPTFSGQQ-------------------------IFALEKTFEQTK 259

Query: 179 YLTRRRRIEIANALCLTERQIKIWFQNRRMKWKKENKLINSTQPSGEDSEAK 230
           YL    R  +A +L +TE Q+K+WFQNRR KW+K++    +T    +DSE +
Sbjct: 260 YLAGPERARLAYSLGMTESQVKVWFQNRRTKWRKKHAAEMATAKKKQDSETE 311



>gi|399982|sp|P31314|TLX1_HUMAN   T-cell leukemia homeobox protein 1 (Homeobox protein Hox-11) (TCL-3
           proto-oncogene)
          Length = 330

 Score = 56.2 bits (134), Expect = 9e-09
 Identities = 23/45 (51%), Positives = 31/45 (68%)

Query: 169 ELEKEFHFNRYLTRRRRIEIANALCLTERQIKIWFQNRRMKWKKE 213
           ELEK FH  +YL    R  +A AL +T+ Q+K WFQNRR KW+++
Sbjct: 215 ELEKRFHRQKYLASAERAALAKALKMTDAQVKTWFQNRRTKWRRQ 259



>gi|20141538|sp|P31275|HXC12_HUMAN   Homeobox protein Hox-C12 (Hox-3F)
          Length = 282

 Score = 56.2 bits (134), Expect = 9e-09
 Identities = 25/44 (56%), Positives = 36/44 (81%)

Query: 169 ELEKEFHFNRYLTRRRRIEIANALCLTERQIKIWFQNRRMKWKK 212
           ELE EF  N ++TR+RR E+++ L L+++Q+KIWFQNRRMK K+
Sbjct: 228 ELEGEFLVNEFITRQRRRELSDRLNLSDQQVKIWFQNRRMKKKR 271



>gi|12644227|sp|P35452|HXD12_HUMAN   Homeobox protein Hox-D12 (Hox-4H)
          Length = 275

 Score = 55.8 bits (133), Expect = 1e-08
 Identities = 24/44 (54%), Positives = 35/44 (79%)

Query: 169 ELEKEFHFNRYLTRRRRIEIANALCLTERQIKIWFQNRRMKWKK 212
           ELE EF  N ++ R++R E++N L L+++Q+KIWFQNRRMK K+
Sbjct: 221 ELENEFLVNEFINRQKRKELSNRLNLSDQQVKIWFQNRRMKKKR 264



>gi|2833256|sp|Q14774|HLX1_HUMAN   Homeobox protein HLX1 (Homeobox protein HB24)
          Length = 488

 Score = 55.8 bits (133), Expect = 1e-08
 Identities = 26/64 (40%), Positives = 40/64 (62%), Gaps = 5/64 (7%)

Query: 170 LEKEFHFNRYLTRRRRIEIANALCLTERQIKIWFQNRRMKWKKENKLINSTQPSGEDSEA 229
           LEK F   +Y+T+  R ++A  L LT+ Q+K+WFQNRRMKW+   +       + +D + 
Sbjct: 291 LEKRFEIQKYVTKPDRKQLAAMLGLTDAQVKVWFQNRRMKWRHSKE-----AQAQKDKDK 345

Query: 230 KAGE 233
           +AGE
Sbjct: 346 EAGE 349



>gi|12231013|sp|Q03828|EVX2_HUMAN   Homeobox even-skipped homolog protein 2 (EVX-2)
          Length = 476

 Score = 55.8 bits (133), Expect = 1e-08
 Identities = 27/54 (50%), Positives = 37/54 (68%)

Query: 170 LEKEFHFNRYLTRRRRIEIANALCLTERQIKIWFQNRRMKWKKENKLINSTQPS 223
           LEKEF+   Y++R RR E+A AL L E  IK+WFQNRRMK K++   ++   P+
Sbjct: 203 LEKEFYRENYVSRPRRCELAAALNLPETTIKVWFQNRRMKDKRQRLAMSWPHPA 256



>gi|1352398|sp|P49640|EVX1_HUMAN   Homeobox even-skipped homolog protein 1 (EVX-1)
          Length = 407

 Score = 55.5 bits (132), Expect = 2e-08
 Identities = 27/54 (50%), Positives = 36/54 (66%)

Query: 170 LEKEFHFNRYLTRRRRIEIANALCLTERQIKIWFQNRRMKWKKENKLINSTQPS 223
           LEKEF+   Y++R RR E+A AL L E  IK+WFQNRRMK K++   +    P+
Sbjct: 198 LEKEFYRENYVSRPRRCELAAALNLPETTIKVWFQNRRMKDKRQRLAMTWPHPA 251



>gi|13431329|sp|Q9UMQ3|BARX2_HUMAN   Homeobox protein BarH-like 2
          Length = 254

 Score = 55.1 bits (131), Expect = 2e-08
 Identities = 23/43 (53%), Positives = 33/43 (76%)

Query: 170 LEKEFHFNRYLTRRRRIEIANALCLTERQIKIWFQNRRMKWKK 212
           LEK+F   +YL+   R+++A +L LT+ Q+K W+QNRRMKWKK
Sbjct: 123 LEKKFQKQKYLSTPDRLDLAQSLGLTQLQVKTWYQNRRMKWKK 165



>gi|23831508|sp|O43711|TLX3_HUMAN   T-cell leukemia homeobox protein 3 (Homeobox protein Hox-11L2)
          Length = 291

 Score = 55.1 bits (131), Expect = 2e-08
 Identities = 22/45 (48%), Positives = 31/45 (68%)

Query: 169 ELEKEFHFNRYLTRRRRIEIANALCLTERQIKIWFQNRRMKWKKE 213
           ELEK FH  +YL    R  +A +L +T+ Q+K WFQNRR KW+++
Sbjct: 180 ELEKRFHRQKYLASAERAALAKSLKMTDAQVKTWFQNRRTKWRRQ 224



>gi|50403792|sp|Q92826|HXB13_HUMAN   Homeobox protein Hox-B13
          Length = 284

 Score = 54.3 bits (129), Expect = 3e-08
 Identities = 28/55 (50%), Positives = 40/55 (72%), Gaps = 1/55 (1%)

Query: 169 ELEKEFHFNRYLTRRRRIEIANALCLTERQIKIWFQNRRMKWKKE-NKLINSTQP 222
           ELE+E+  N+++T+ +R +I+ A  L+ERQI IWFQNRR+K KK   K+ NS  P
Sbjct: 230 ELEREYAANKFITKDKRRKISAATSLSERQITIWFQNRRVKEKKVLAKVKNSATP 284



>gi|547658|sp|Q03014|HHEX_HUMAN   Homeobox protein PRH (Hematopoietically expressed homeobox)
           (Homeobox protein HEX)
          Length = 270

 Score = 54.3 bits (129), Expect = 3e-08
 Identities = 27/57 (47%), Positives = 36/57 (63%), Gaps = 3/57 (5%)

Query: 168 LELEKEFHFNRYLTRRRRIEIANALCLTERQIKIWFQNRRMKW---KKENKLINSTQ 221
           +ELEK+F   +YL+   R  +A  L L+ERQ+K WFQNRR KW   K+EN   N  +
Sbjct: 150 IELEKKFETQKYLSPPERKRLAKMLQLSERQVKTWFQNRRAKWRRLKQENPQSNKKE 206



>gi|14194481|sp|Q9HBU1|BARX1_HUMAN   Homeobox protein BarH-like 1
          Length = 225

 Score = 54.3 bits (129), Expect = 3e-08
 Identities = 27/59 (45%), Positives = 38/59 (64%), Gaps = 4/59 (6%)

Query: 170 LEKEFHFNRYLTRRRRIEIANALCLTERQIKIWFQNRRMKWKK----ENKLINSTQPSG 224
           LEK F   +YL+   RI++A +L L++ Q+K W+QNRRMKWKK       L + T+P G
Sbjct: 128 LEKRFEKQKYLSTPDRIDLAESLGLSQLQVKTWYQNRRMKWKKIVLQGGGLESPTKPKG 186



>gi|21903415|sp|P19622|HME2_HUMAN   Homeobox protein engrailed-2 (Hu-En-2)
          Length = 333

 Score = 53.9 bits (128), Expect = 4e-08
 Identities = 26/43 (60%), Positives = 30/43 (69%)

Query: 170 LEKEFHFNRYLTRRRRIEIANALCLTERQIKIWFQNRRMKWKK 212
           L+ EF  NRYLT +RR  +A  L L E QIKIWFQN+R K KK
Sbjct: 259 LKAEFQTNRYLTEQRRQSLAQELSLNESQIKIWFQNKRAKIKK 301



>gi|19862512|sp|Q04743|EMX2_HUMAN   Homeobox protein EMX2 (Empty spiracles homolog 2) (Empty
           spiracles-like protein 2)
          Length = 252

 Score = 53.5 bits (127), Expect = 6e-08
 Identities = 26/63 (41%), Positives = 38/63 (60%), Gaps = 5/63 (7%)

Query: 168 LELEKEFHFNRYLTRRRRIEIANALCLTERQIKIWFQNRRMKWKKENKLINSTQPSGEDS 227
           L LE  F  N Y+    R ++A++L LTE Q+K+WFQNRR K+K++       +  G DS
Sbjct: 167 LRLEHAFEKNHYVVGAERKQLAHSLSLTETQVKVWFQNRRTKFKRQ-----KLEEEGSDS 221

Query: 228 EAK 230
           + K
Sbjct: 222 QQK 224



>gi|14917010|sp|Q05925|HME1_HUMAN   Homeobox protein engrailed-1 (Hu-En-1)
          Length = 392

 Score = 53.5 bits (127), Expect = 6e-08
 Identities = 26/49 (53%), Positives = 32/49 (65%)

Query: 170 LEKEFHFNRYLTRRRRIEIANALCLTERQIKIWFQNRRMKWKKENKLIN 218
           L+ EF  NRY+T +RR  +A  L L E QIKIWFQN+R K KK   + N
Sbjct: 318 LKAEFQANRYITEQRRQTLAQELSLNESQIKIWFQNKRAKIKKATGIKN 366



>gi|20532295|sp|Q9UIW0|VAX2_HUMAN   Ventral anterior homeobox 2
          Length = 290

 Score = 52.4 bits (124), Expect = 1e-07
 Identities = 28/62 (45%), Positives = 36/62 (58%)

Query: 170 LEKEFHFNRYLTRRRRIEIANALCLTERQIKIWFQNRRMKWKKENKLINSTQPSGEDSEA 229
           LE EF   +Y+  R R E+A  L L+E Q+K+WFQNRR K KK+       + S   SEA
Sbjct: 117 LEMEFQRCQYVVGRERTELARQLNLSETQVKVWFQNRRTKQKKDQSRDLEKRASSSASEA 176

Query: 230 KA 231
            A
Sbjct: 177 FA 178



>gi|29336920|sp|Q9BZE3|BARH1_HUMAN   BarH-like 1 homeobox protein (FKSG31 protein)
          Length = 327

 Score = 52.4 bits (124), Expect = 1e-07
 Identities = 21/45 (46%), Positives = 34/45 (75%)

Query: 169 ELEKEFHFNRYLTRRRRIEIANALCLTERQIKIWFQNRRMKWKKE 213
           +LE+ F   +YL+ + R+E+A +L LT+ Q+K W+QNRR KWK++
Sbjct: 192 QLERSFERQKYLSVQDRMELAASLNLTDTQVKTWYQNRRTKWKRQ 236



>gi|6016210|sp|P78367|NK32_HUMAN   Homeobox protein Nkx-3.2 (Bagpipe homeobox protein homolog 1)
          Length = 333

 Score = 52.4 bits (124), Expect = 1e-07
 Identities = 24/44 (54%), Positives = 32/44 (72%)

Query: 169 ELEKEFHFNRYLTRRRRIEIANALCLTERQIKIWFQNRRMKWKK 212
           ELE+ F+  RYL+   R ++A +L LTE Q+KIWFQNRR K K+
Sbjct: 220 ELERRFNHQRYLSGPERADLAASLKLTETQVKIWFQNRRYKTKR 263



>gi|57015304|sp|Q04741|EMX1_HUMAN   Homeobox protein EMX1 (Empty spiracles homolog 1) (Empty
           spiracles-like protein 1)
          Length = 257

 Score = 52.4 bits (124), Expect = 1e-07
 Identities = 25/63 (39%), Positives = 38/63 (60%), Gaps = 5/63 (7%)

Query: 168 LELEKEFHFNRYLTRRRRIEIANALCLTERQIKIWFQNRRMKWKKENKLINSTQPSGEDS 227
           L LE+ F  N Y+    R ++A +L L+E Q+K+WFQNRR K+K++       +  G +S
Sbjct: 172 LRLERAFEKNHYVVGAERKQLAGSLSLSETQVKVWFQNRRTKYKRQ-----KLEEEGPES 226

Query: 228 EAK 230
           E K
Sbjct: 227 EQK 229



>gi|20532396|sp|O43763|TLX2_HUMAN   T-cell leukemia homeobox protein 2 (Homeobox protein Hox-11L1)
           (Neural crest homeobox protein)
          Length = 284

 Score = 52.4 bits (124), Expect = 1e-07
 Identities = 22/46 (47%), Positives = 31/46 (67%)

Query: 168 LELEKEFHFNRYLTRRRRIEIANALCLTERQIKIWFQNRRMKWKKE 213
           LELE+ F   +YL    R  +A AL +T+ Q+K WFQNRR KW+++
Sbjct: 170 LELERRFLRQKYLASAERAALAKALRMTDAQVKTWFQNRRTKWRRQ 215



>gi|47117915|sp|Q9NY43|BARH2_HUMAN   BarH-like 2 homeobox protein
          Length = 387

 Score = 52.4 bits (124), Expect = 1e-07
 Identities = 21/45 (46%), Positives = 34/45 (75%)

Query: 169 ELEKEFHFNRYLTRRRRIEIANALCLTERQIKIWFQNRRMKWKKE 213
           +LE+ F   +YL+ + R+++A AL LT+ Q+K W+QNRR KWK++
Sbjct: 246 QLERSFERQKYLSVQDRMDLAAALNLTDTQVKTWYQNRRTKWKRQ 290



>gi|17377578|sp|Q99801|NKX31_HUMAN   Homeobox protein Nkx-3.1
          Length = 234

 Score = 51.2 bits (121), Expect = 3e-07
 Identities = 23/46 (50%), Positives = 32/46 (69%)

Query: 168 LELEKEFHFNRYLTRRRRIEIANALCLTERQIKIWFQNRRMKWKKE 213
           +ELE++F   +YL+   R  +A  L LTE Q+KIWFQNRR K K++
Sbjct: 137 IELERKFSHQKYLSAPERAHLAKNLKLTETQVKIWFQNRRYKTKRK 182



>gi|27923733|sp|Q96QS3|ARX_HUMAN   Homeobox protein ARX (Aristaless-related homeobox)
          Length = 562

 Score = 51.2 bits (121), Expect = 3e-07
 Identities = 25/56 (44%), Positives = 32/56 (57%)

Query: 169 ELEKEFHFNRYLTRRRRIEIANALCLTERQIKIWFQNRRMKWKKENKLINSTQPSG 224
           ELE+ F    Y     R E+A  L LTE ++++WFQNRR KW+K  K    T P G
Sbjct: 342 ELERAFQKTHYPDVFTREELAMRLDLTEARVQVWFQNRRAKWRKREKAGAQTHPPG 397



>gi|1708211|sp|P52952|NK25_HUMAN   Homeobox protein Nkx-2.5 (Homeobox protein NK-2 homolog E)
           (Cardiac-specific homeobox) (Homeobox protein CSX)
          Length = 324

 Score = 50.4 bits (119), Expect = 5e-07
 Identities = 23/47 (48%), Positives = 32/47 (68%)

Query: 169 ELEKEFHFNRYLTRRRRIEIANALCLTERQIKIWFQNRRMKWKKENK 215
           ELE+ F   RYL+   R ++A+ L LT  Q+KIWFQNRR K K++ +
Sbjct: 152 ELERRFKQQRYLSAPERDQLASVLKLTSTQVKIWFQNRRYKCKRQRQ 198



>gi|2828197|sp|P31271|HXA13_HUMAN   Homeobox protein Hox-A13 (Hox-1J)
          Length = 388

 Score = 50.4 bits (119), Expect = 5e-07
 Identities = 25/49 (51%), Positives = 36/49 (73%), Gaps = 1/49 (2%)

Query: 169 ELEKEFHFNRYLTRRRRIEIANALCLTERQIKIWFQNRRMKWKKE-NKL 216
           ELE+E+  N+++T+ +R  I+    L+ERQ+ IWFQNRR+K KK  NKL
Sbjct: 336 ELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKVINKL 384



>gi|20141539|sp|P31276|HXC13_HUMAN   Homeobox protein Hox-C13 (Hox-3G)
          Length = 330

 Score = 50.1 bits (118), Expect = 6e-07
 Identities = 22/44 (50%), Positives = 33/44 (75%)

Query: 169 ELEKEFHFNRYLTRRRRIEIANALCLTERQIKIWFQNRRMKWKK 212
           ELEKE+  ++++T+ +R  I+    L+ERQ+ IWFQNRR+K KK
Sbjct: 274 ELEKEYAASKFITKEKRRRISATTNLSERQVTIWFQNRRVKEKK 317



>gi|23503066|sp|P28360|MSX1_HUMAN   Homeobox protein MSX-1 (Hox-7)
          Length = 297

 Score = 50.1 bits (118), Expect = 6e-07
 Identities = 23/45 (51%), Positives = 32/45 (71%)

Query: 168 LELEKEFHFNRYLTRRRRIEIANALCLTERQIKIWFQNRRMKWKK 212
           L LE++F   +YL+   R E +++L LTE Q+KIWFQNRR K K+
Sbjct: 179 LALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNRRAKAKR 223



>gi|27923815|sp|Q8TAU0|NKX23_HUMAN   Homeobox protein Nkx-2.3 (Homeobox protein NKX-2.3) (Homeobox
           protein NK-2 homolog C)
          Length = 364

 Score = 50.1 bits (118), Expect = 6e-07
 Identities = 23/47 (48%), Positives = 32/47 (68%)

Query: 169 ELEKEFHFNRYLTRRRRIEIANALCLTERQIKIWFQNRRMKWKKENK 215
           ELE+ F   RYL+   R  +A++L LT  Q+KIWFQNRR K K++ +
Sbjct: 162 ELERRFKQQRYLSAPEREHLASSLKLTSTQVKIWFQNRRYKCKRQRQ 208



>gi|38605720|sp|P56177|DLX1_HUMAN   Homeobox protein DLX-1
          Length = 255

 Score = 50.1 bits (118), Expect = 6e-07
 Identities = 35/109 (32%), Positives = 49/109 (44%), Gaps = 6/109 (5%)

Query: 104 HFSPEQQYKPDSSSGQGKALHDEGADRKYTSPVYPWMQRMNSCAGAVYGSHXXXXXXXXX 163
           + S  Q Y   +S  Q + L D GAD + ++ V     R N       G           
Sbjct: 83  YISSVQSYPGSASLAQSR-LEDPGADSEKSTVVEGGEVRFNG-----KGKKIRKPRTIYC 136

Query: 164 XXXXLELEKEFHFNRYLTRRRRIEIANALCLTERQIKIWFQNRRMKWKK 212
                 L + F   +YL    R E+A +L LT+ Q+KIWFQN+R K+KK
Sbjct: 137 SLQLQALNRRFQQTQYLALPERAELAASLGLTQTQVKIWFQNKRSKFKK 185



>gi|2851475|sp|P35453|HXD13_HUMAN   Homeobox protein Hox-D13 (Hox-4I)
          Length = 335

 Score = 49.3 bits (116), Expect = 1e-06
 Identities = 22/44 (50%), Positives = 32/44 (72%)

Query: 169 ELEKEFHFNRYLTRRRRIEIANALCLTERQIKIWFQNRRMKWKK 212
           ELE E+  N+++ + +R  I+ A  L+ERQ+ IWFQNRR+K KK
Sbjct: 282 ELENEYAINKFINKDKRRRISAATNLSERQVTIWFQNRRVKDKK 325



>gi|13959687|sp|P35548|MSX2_HUMAN   Homeobox protein MSX-2 (Hox-8)
          Length = 267

 Score = 49.3 bits (116), Expect = 1e-06
 Identities = 23/45 (51%), Positives = 32/45 (71%)

Query: 168 LELEKEFHFNRYLTRRRRIEIANALCLTERQIKIWFQNRRMKWKK 212
           L LE++F   +YL+   R E +++L LTE Q+KIWFQNRR K K+
Sbjct: 155 LALERKFRQKQYLSIAERAEFSSSLNLTETQVKIWFQNRRAKAKR 199



>gi|2506529|sp|Q07687|DLX2_HUMAN   Homeobox protein DLX-2
          Length = 328

 Score = 48.5 bits (114), Expect = 2e-06
 Identities = 22/43 (51%), Positives = 30/43 (69%)

Query: 170 LEKEFHFNRYLTRRRRIEIANALCLTERQIKIWFQNRRMKWKK 212
           L++ F   +YL    R E+A +L LT+ Q+KIWFQNRR K+KK
Sbjct: 167 LQRRFQKTQYLALPERAELAASLGLTQTQVKIWFQNRRSKFKK 209



>gi|6016208|sp|O15522|NK28_HUMAN   Homeobox protein Nkx-2.8 (Homeobox protein NK-2 homolog H)
          Length = 239

 Score = 48.5 bits (114), Expect = 2e-06
 Identities = 23/45 (51%), Positives = 30/45 (66%)

Query: 168 LELEKEFHFNRYLTRRRRIEIANALCLTERQIKIWFQNRRMKWKK 212
           LELE+ F   RYL+   R ++A+ L LT  Q+KIWFQN R K K+
Sbjct: 97  LELERRFRQQRYLSAPEREQLASLLRLTPTQVKIWFQNHRYKLKR 141



>gi|1174819|sp|P43699|TITF1_HUMAN   Thyroid transcription factor 1 (Thyroid nuclear factor 1) (TTF-1)
           (Homeobox protein Nkx-2.1) (Homeobox protein NK-2
           homolog A)
          Length = 371

 Score = 48.1 bits (113), Expect = 2e-06
 Identities = 25/64 (39%), Positives = 36/64 (56%)

Query: 169 ELEKEFHFNRYLTRRRRIEIANALCLTERQIKIWFQNRRMKWKKENKLINSTQPSGEDSE 228
           ELE+ F   +YL+   R  +A+ + LT  Q+KIWFQN R K K++ K   + Q   +DS 
Sbjct: 175 ELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQAKDKAAQQQLQQDSG 234

Query: 229 AKAG 232
              G
Sbjct: 235 GGGG 238



>gi|6174907|sp|Q99697|PITX2_HUMAN   Pituitary homeobox 2 (RIEG bicoid-related homeobox transcription
           factor) (Solurshin) (ALL1 responsive protein ARP1)
          Length = 317

 Score = 47.4 bits (111), Expect = 4e-06
 Identities = 22/47 (46%), Positives = 29/47 (61%)

Query: 169 ELEKEFHFNRYLTRRRRIEIANALCLTERQIKIWFQNRRMKWKKENK 215
           ELE  F  NRY     R EIA    LTE ++++WF+NRR KW+K  +
Sbjct: 99  ELEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRKRER 145



>gi|6093723|sp|O75364|PITX3_HUMAN   Pituitary homeobox 3 (Homeobox protein PITX3)
          Length = 302

 Score = 47.4 bits (111), Expect = 4e-06
 Identities = 22/47 (46%), Positives = 29/47 (61%)

Query: 169 ELEKEFHFNRYLTRRRRIEIANALCLTERQIKIWFQNRRMKWKKENK 215
           ELE  F  NRY     R EIA    LTE ++++WF+NRR KW+K  +
Sbjct: 76  ELEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRKRER 122



>gi|3913487|sp|O60479|DLX3_HUMAN   Homeobox protein DLX-3
          Length = 287

 Score = 47.0 bits (110), Expect = 5e-06
 Identities = 22/43 (51%), Positives = 29/43 (67%)

Query: 170 LEKEFHFNRYLTRRRRIEIANALCLTERQIKIWFQNRRMKWKK 212
           L++ F   +YL    R E+A  L LT+ Q+KIWFQNRR K+KK
Sbjct: 144 LQRRFQKAQYLALPERAELAAQLGLTQTQVKIWFQNRRSKFKK 186



>gi|3024482|sp|P78337|PITX1_HUMAN   Pituitary homeobox 1 (Hindlimb expressed homeobox protein backfoot)
          Length = 314

 Score = 47.0 bits (110), Expect = 5e-06
 Identities = 22/47 (46%), Positives = 29/47 (61%)

Query: 169 ELEKEFHFNRYLTRRRRIEIANALCLTERQIKIWFQNRRMKWKKENK 215
           ELE  F  NRY     R EIA    LTE ++++WF+NRR KW+K  +
Sbjct: 103 ELEATFQRNRYPDMSMREEIAVWTNLTEPRVRVWFKNRRAKWRKRER 149



>gi|1730095|sp|P52954|LBX1_HUMAN   Transcription factor LBX1
          Length = 280

 Score = 47.0 bits (110), Expect = 5e-06
 Identities = 23/45 (51%), Positives = 29/45 (64%)

Query: 169 ELEKEFHFNRYLTRRRRIEIANALCLTERQIKIWFQNRRMKWKKE 213
           ELEK F + +YL+   R +IA  L LT  Q+  WFQNRR K K+E
Sbjct: 138 ELEKRFLYQKYLSPADRDQIAQQLGLTNAQVITWFQNRRAKLKRE 182



>gi|27923817|sp|Q9H2Z4|NK24_HUMAN   Homeobox protein Nkx-2.4 (Homeobox protein NKX2.4) (Homeobox
           protein NK-2 homolog D)
          Length = 353

 Score = 46.2 bits (108), Expect = 9e-06
 Identities = 21/47 (44%), Positives = 30/47 (63%)

Query: 169 ELEKEFHFNRYLTRRRRIEIANALCLTERQIKIWFQNRRMKWKKENK 215
           ELE+ F   +YL+   R  +A+ + LT  Q+KIWFQN R K K++ K
Sbjct: 203 ELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQAK 249



>gi|6016205|sp|O95096|NKX22_HUMAN   Homeobox protein Nkx-2.2 (Homeobox protein NK-2 homolog B)
          Length = 273

 Score = 45.8 bits (107), Expect = 1e-05
 Identities = 21/44 (47%), Positives = 28/44 (63%)

Query: 169 ELEKEFHFNRYLTRRRRIEIANALCLTERQIKIWFQNRRMKWKK 212
           ELE+ F   RYL+   R  +A+ + LT  Q+KIWFQN R K K+
Sbjct: 142 ELERRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKMKR 185



>gi|12644329|sp|P56178|DLX5_HUMAN   Homeobox protein DLX-5
          Length = 289

 Score = 45.8 bits (107), Expect = 1e-05
 Identities = 21/43 (48%), Positives = 29/43 (67%)

Query: 170 LEKEFHFNRYLTRRRRIEIANALCLTERQIKIWFQNRRMKWKK 212
           L++ F   +YL    R E+A +L LT+ Q+KIWFQN+R K KK
Sbjct: 152 LQRRFQKTQYLALPERAELAASLGLTQTQVKIWFQNKRSKIKK 194



>gi|6174889|sp|P26367|PAX6_HUMAN   Paired box protein Pax-6 (Oculorhombin) (Aniridia, type II protein)
          Length = 422

 Score = 45.8 bits (107), Expect = 1e-05
 Identities = 22/49 (44%), Positives = 29/49 (59%)

Query: 170 LEKEFHFNRYLTRRRRIEIANALCLTERQIKIWFQNRRMKWKKENKLIN 218
           LEKEF    Y     R  +A  + L E +I++WF NRR KW++E KL N
Sbjct: 225 LEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEKLRN 273



>gi|17380297|sp|Q9Y2V3|RX_HUMAN   Retinal homeobox protein Rx (Retina and anterior neural fold
           homeobox protein)
          Length = 346

 Score = 45.8 bits (107), Expect = 1e-05
 Identities = 20/48 (41%), Positives = 31/48 (64%)

Query: 169 ELEKEFHFNRYLTRRRRIEIANALCLTERQIKIWFQNRRMKWKKENKL 216
           ELE+ F  + Y     R E+A  + L E ++++WFQNRR KW+++ KL
Sbjct: 150 ELERAFEKSHYPDVYSREELAGKVNLPEVRVQVWFQNRRAKWRRQEKL 197



>gi|3914276|sp|O43316|PAX4_HUMAN   Paired box protein Pax-4
          Length = 350

 Score = 45.8 bits (107), Expect = 1e-05
 Identities = 20/47 (42%), Positives = 29/47 (61%)

Query: 170 LEKEFHFNRYLTRRRRIEIANALCLTERQIKIWFQNRRMKWKKENKL 216
           LEKEF   +Y     R ++A A  L E  +++WF NRR KW+++ KL
Sbjct: 185 LEKEFQRGQYPDSVARGKLATATSLPEDTVRVWFSNRRAKWRRQEKL 231



>gi|12644330|sp|P56179|DLX6_HUMAN   Homeobox protein DLX-6
          Length = 175

 Score = 45.4 bits (106), Expect = 2e-05
 Identities = 21/43 (48%), Positives = 28/43 (65%)

Query: 170 LEKEFHFNRYLTRRRRIEIANALCLTERQIKIWFQNRRMKWKK 212
           L   F   +YL    R E+A +L LT+ Q+KIWFQN+R K+KK
Sbjct: 64  LNHRFQQTQYLALPERAELAASLGLTQTQVKIWFQNKRSKFKK 106



>gi|3915680|sp|Q92988|DLX4_HUMAN   Homeobox protein DLX-4 (DLX-7) (DLX-8)
          Length = 347

 Score = 45.4 bits (106), Expect = 2e-05
 Identities = 20/43 (46%), Positives = 28/43 (65%)

Query: 170 LEKEFHFNRYLTRRRRIEIANALCLTERQIKIWFQNRRMKWKK 212
           L + F   +YL    R ++A  L LT+ Q+KIWFQN+R K+KK
Sbjct: 240 LNQRFQHTQYLALPERAQLAAQLGLTQTQVKIWFQNKRSKYKK 282



>gi|8134640|sp|O14813|PHX2A_HUMAN   Paired mesoderm homeobox protein 2A (Paired-like homeobox 2A)
           (Aristaless homeobox protein homolog) (ARIX1 homeodomain
           protein)
          Length = 284

 Score = 44.3 bits (103), Expect = 4e-05
 Identities = 24/65 (36%), Positives = 39/65 (60%), Gaps = 1/65 (1%)

Query: 169 ELEKEFHFNRYLTRRRRIEIANALCLTERQIKIWFQNRRMKWKKENKLINSTQPSGEDSE 228
           ELE+ F    Y     R E+A  + LTE ++++WFQNRR K++K+ +  ++   +G  + 
Sbjct: 104 ELERVFAETHYPDIYTREELALKIDLTEARVQVWFQNRRAKFRKQERAASAKGAAGA-AG 162

Query: 229 AKAGE 233
           AK GE
Sbjct: 163 AKKGE 167



>gi|13626112|sp|Q9H161|ALX4_HUMAN   Homeobox protein aristaless-like 4
          Length = 411

 Score = 44.3 bits (103), Expect = 4e-05
 Identities = 20/47 (42%), Positives = 28/47 (59%)

Query: 169 ELEKEFHFNRYLTRRRRIEIANALCLTERQIKIWFQNRRMKWKKENK 215
           ELEK F    Y     R ++A    LTE ++++WFQNRR KW+K  +
Sbjct: 228 ELEKVFQKTHYPDVYAREQLAMRTDLTEARVQVWFQNRRAKWRKRER 274



>gi|37537987|sp|Q9BQY4|PEP2_HUMAN   Paired-like homeobox protein PEPP-2 (Testis homeobox gene 1)
          Length = 288

 Score = 43.9 bits (102), Expect = 5e-05
 Identities = 28/131 (21%), Positives = 55/131 (41%), Gaps = 2/131 (1%)

Query: 87  GASPSGSGKQRGPGDYLHFSPEQQYKPDSSSGQGKALHDEGADRKYTSPVYPWMQRMNSC 146
           G    G G+++  G      P   ++ D     G   + E +D+    P   + +   + 
Sbjct: 68  GEEKDGGGEEKDGGGA--GVPGHLWEGDLEGTSGSDGNVEDSDQSEKEPGQQYSRPQGAV 125

Query: 147 AGAVYGSHXXXXXXXXXXXXXLELEKEFHFNRYLTRRRRIEIANALCLTERQIKIWFQNR 206
            G   G+               ELE+ F   ++ +   R  +A ++ +TE  ++IWF+NR
Sbjct: 126 GGLEPGNAQQPNVHAFTPLQLQELERIFQREQFPSEFLRRRLARSMNVTELAVQIWFENR 185

Query: 207 RMKWKKENKLI 217
           R KW++  + +
Sbjct: 186 RAKWRRHQRAL 196



>gi|48428084|sp|Q8N693|ESX1L_HUMAN   Extraembryonic, spermatogenesis, homeobox 1-like protein
          Length = 406

 Score = 43.9 bits (102), Expect = 5e-05
 Identities = 20/49 (40%), Positives = 31/49 (63%)

Query: 169 ELEKEFHFNRYLTRRRRIEIANALCLTERQIKIWFQNRRMKWKKENKLI 217
           ELE  F  ++Y     R  +A  L LTE ++++WFQNRR KWK+  +++
Sbjct: 153 ELENFFDESQYPDVVARERLAARLNLTEDRVQVWFQNRRAKWKRNQRVL 201



>gi|13626107|sp|O95076|ALX3_HUMAN   Homeobox protein aristaless-like 3 (Proline-rich transcription
           factor ALX3)
          Length = 343

 Score = 43.9 bits (102), Expect = 5e-05
 Identities = 20/47 (42%), Positives = 28/47 (59%)

Query: 169 ELEKEFHFNRYLTRRRRIEIANALCLTERQIKIWFQNRRMKWKKENK 215
           ELEK F    Y     R ++A    LTE ++++WFQNRR KW+K  +
Sbjct: 167 ELEKVFQKTHYPDVYAREQLALRTDLTEARVQVWFQNRRAKWRKRER 213



>gi|12644347|sp|P78413|IRX4_HUMAN   Iroquois-class homeodomain protein IRX-4 (Iroquois homeobox protein
           4) (Homeodomain protein IRXA3)
          Length = 519

 Score = 43.5 bits (101), Expect = 6e-05
 Identities = 44/178 (24%), Positives = 60/178 (33%), Gaps = 43/178 (24%)

Query: 68  NRASYEYGASCFYSDKDLSGASPSGS---GKQRGPGDYLHFSPEQ-QYKPDSSSGQGKAL 123
           N  +Y   AS FYS         SGS   G       Y  + P   QY  D         
Sbjct: 85  NYVTYGSEASAFYSLNSFDSKDGSGSAHGGLAPAAAAYYPYEPALGQYPYDRYGTMDSGT 144

Query: 124 HDEGADRKYTSPVYPWMQRMNSCAGAVYGSHXXXXXXXXXXXXXLELEKEFHFNRYLTRR 183
             + A R+ TS +  W+Q                               E   N Y T+ 
Sbjct: 145 RRKNATRETTSTLKAWLQ-------------------------------EHRKNPYPTKG 173

Query: 184 RRIEIANALCLTERQIKIWFQNRRMKWKKENKL--------INSTQPSGEDSEAKAGE 233
            +I +A    +T  Q+  WF N R + KKENK+         +  +P  E  E + GE
Sbjct: 174 EKIMLAIITKMTLTQVSTWFANARRRLKKENKMTWPPRNKCADEKRPYAEGEEEEGGE 231



>gi|8247951|sp|P23759|PAX7_HUMAN   Paired box protein Pax-7 (HUP1)
          Length = 520

 Score = 43.5 bits (101), Expect = 6e-05
 Identities = 19/45 (42%), Positives = 27/45 (60%)

Query: 169 ELEKEFHFNRYLTRRRRIEIANALCLTERQIKIWFQNRRMKWKKE 213
           ELEK F    Y     R E+A    LTE ++++WF NRR +W+K+
Sbjct: 231 ELEKAFERTHYPDIYTREELAQRTKLTEARVQVWFSNRRARWRKQ 275



>gi|3023579|sp|Q15699|CRT1_HUMAN   Cartilage homeoprotein 1 (CART-1)
          Length = 326

 Score = 42.7 bits (99), Expect = 1e-04
 Identities = 20/47 (42%), Positives = 28/47 (59%)

Query: 169 ELEKEFHFNRYLTRRRRIEIANALCLTERQIKIWFQNRRMKWKKENK 215
           ELEK F    Y     R ++A    LTE ++++WFQNRR KW+K  +
Sbjct: 146 ELEKVFQKTHYPDVYVREQLALRTELTEARVQVWFQNRRAKWRKRER 192



>gi|1172022|sp|P23760|PAX3_HUMAN   Paired box protein Pax-3 (HUP2)
          Length = 479

 Score = 42.4 bits (98), Expect = 1e-04
 Identities = 18/45 (40%), Positives = 27/45 (60%)

Query: 169 ELEKEFHFNRYLTRRRRIEIANALCLTERQIKIWFQNRRMKWKKE 213
           ELE+ F    Y     R E+A    LTE ++++WF NRR +W+K+
Sbjct: 233 ELERAFERTHYPDIYTREELAQRAKLTEARVQVWFSNRRARWRKQ 277



>gi|17374365|sp|P58304|CHX10_HUMAN   Homeobox protein CHX10 (Ceh-10 homeodomain containing homolog)
          Length = 361

 Score = 41.2 bits (95), Expect = 3e-04
 Identities = 21/47 (44%), Positives = 27/47 (57%)

Query: 169 ELEKEFHFNRYLTRRRRIEIANALCLTERQIKIWFQNRRMKWKKENK 215
           ELEK F+   Y     R  +A    L E +I++WFQNRR KW+K  K
Sbjct: 162 ELEKAFNEAHYPDVYAREMLAMKTELPEDRIQVWFQNRRAKWRKREK 208



>gi|8134644|sp|Q99453|PHX2B_HUMAN   Paired mesoderm homeobox protein 2B (Paired-like homeobox 2B)
           (PHOX2B homeodomain protein) (Neuroblastoma Phox)
           (NBPhox)
          Length = 314

 Score = 41.2 bits (95), Expect = 3e-04
 Identities = 19/47 (40%), Positives = 30/47 (63%)

Query: 169 ELEKEFHFNRYLTRRRRIEIANALCLTERQIKIWFQNRRMKWKKENK 215
           ELE+ F    Y     R E+A  + LTE ++++WFQNRR K++K+ +
Sbjct: 112 ELERVFAETHYPDIYTREELALKIDLTEARVQVWFQNRRAKFRKQER 158



>gi|18202099|sp|O60902|SHOX2_HUMAN   Short stature homeobox protein 2 (Paired-related homeobox protein
           SHOT) (Homeobox protein Og12X)
          Length = 331

 Score = 40.4 bits (93), Expect = 5e-04
 Identities = 21/63 (33%), Positives = 35/63 (55%)

Query: 169 ELEKEFHFNRYLTRRRRIEIANALCLTERQIKIWFQNRRMKWKKENKLINSTQPSGEDSE 228
           ELE+ F    Y     R E++  L L+E ++++WFQNRR K +K+   ++     G  S+
Sbjct: 154 ELERLFDETHYPDAFMREELSQRLGLSEARVQVWFQNRRAKCRKQENQLHKGVLIGAASQ 213

Query: 229 AKA 231
            +A
Sbjct: 214 FEA 216



>gi|25009572|sp|Q9NZR4|VSX1_HUMAN   Visual system homeobox 1 (Transcription factor VSX1) (Retinal inner
           nuclear layer homeobox protein) (Homeodomain protein
           RINX)
          Length = 365

 Score = 40.0 bits (92), Expect = 7e-04
 Identities = 21/47 (44%), Positives = 26/47 (55%)

Query: 169 ELEKEFHFNRYLTRRRRIEIANALCLTERQIKIWFQNRRMKWKKENK 215
           ELEK F    Y     R  +A    L E +I++WFQNRR KW+K  K
Sbjct: 178 ELEKAFSEAHYPDVYAREMLAVKTELPEDRIQVWFQNRRAKWRKREK 224



>gi|47117872|sp|P78412|IRX6_HUMAN   Iroquois-class homeodomain protein IRX-6 (Iroquois homeobox protein
           6) (Homeodomain protein IRXB3)
          Length = 445

 Score = 39.7 bits (91), Expect = 9e-04
 Identities = 22/62 (35%), Positives = 34/62 (54%), Gaps = 1/62 (1%)

Query: 173 EFHFNRYLTRRRRIEIANALCLTERQIKIWFQNRRMKWKKENKLINSTQ-PSGEDSEAKA 231
           E   N Y T+  +I +A    +T  Q+  WF N R + KKENK+  + +   GE+ +A+ 
Sbjct: 167 EHRKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENKMTWAPKNKGGEERKAEG 226

Query: 232 GE 233
           GE
Sbjct: 227 GE 228



>gi|47117908|sp|Q9BZI1|IRX2_HUMAN   Iroquois-class homeodomain protein IRX-2 (Iroquois homeobox protein
           2) (Homeodomain protein IRXA2)
          Length = 471

 Score = 39.7 bits (91), Expect = 9e-04
 Identities = 20/61 (32%), Positives = 31/61 (50%)

Query: 173 EFHFNRYLTRRRRIEIANALCLTERQIKIWFQNRRMKWKKENKLINSTQPSGEDSEAKAG 232
           E   N Y T+  +I +A    +T  Q+  WF N R + KKENK+  + +   ED +   G
Sbjct: 135 EHRKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENKMTWAPRNKSEDEDEDEG 194

Query: 233 E 233
           +
Sbjct: 195 D 195



>gi|7531125|sp|P56915|GSC_HUMAN   Homeobox protein goosecoid
          Length = 252

 Score = 39.3 bits (90), Expect = 0.001
 Identities = 19/59 (32%), Positives = 33/59 (55%), Gaps = 6/59 (10%)

Query: 170 LEKEFHFNRYLTRRRRIEIANALCLTERQIKIWFQNRRMKWKKENKLINSTQPSGEDSE 228
           LE  F   +Y     R ++A  + L E ++++WF+NRR KW+++ +       S E+SE
Sbjct: 170 LENLFQETKYPDVGTREQLARKVHLREEKVEVWFKNRRAKWRRQKR------SSSEESE 222



>gi|47117871|sp|P78411|IRX5_HUMAN   Iroquois-class homeodomain protein IRX-5 (Iroquois homeobox protein
           5) (Homeodomain protein IRXB2) (IRX-2A)
          Length = 482

 Score = 39.3 bits (90), Expect = 0.001
 Identities = 45/189 (23%), Positives = 61/189 (32%), Gaps = 12/189 (6%)

Query: 51  TYTSPCFYQQSNSVLACNRASYEYGASCFYSDKDLSGASPSGSGKQRGPGDYLHFSPEQQ 110
           +Y     YQ S S+   +  +Y           +L G S SGS      G     +P   
Sbjct: 2   SYPQGYLYQPSASLALYSCPAYSTSVISGPRTDEL-GRSSSGSAFSPYAGSTAFTAPSPG 60

Query: 111 YKPDSSSGQGKALHDEGADRKYTSPVYPWMQRMNSCAGA----------VYGSHXXXXXX 160
           Y      G   A     A   Y    Y     M    G            YG        
Sbjct: 61  YNSHLQYGADPAAAAAAAFSSYVGSPYDHTPGMAGSLGYHPYAAPLGSYPYGDPAYRKNA 120

Query: 161 XXXXXXXLELE-KEFHFNRYLTRRRRIEIANALCLTERQIKIWFQNRRMKWKKENKLINS 219
                  L+    E   N Y T+  +I +A    +T  Q+  WF N R + KKENK+  +
Sbjct: 121 TRDATATLKAWLNEHRKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENKMTWT 180

Query: 220 TQPSGEDSE 228
            +   ED E
Sbjct: 181 PRNRSEDEE 189



>gi|6831676|sp|O15266|SHOX_HUMAN   Short stature homeobox protein (Short stature homeobox containing
           protein) (Pseudoautosomal homeobox containing osteogenic
           protein)
          Length = 292

 Score = 38.9 bits (89), Expect = 0.001
 Identities = 18/45 (40%), Positives = 28/45 (62%)

Query: 169 ELEKEFHFNRYLTRRRRIEIANALCLTERQIKIWFQNRRMKWKKE 213
           ELE+ F    Y     R E++  L L+E ++++WFQNRR K +K+
Sbjct: 131 ELERLFDETHYPDAFMREELSQRLGLSEARVQVWFQNRRAKCRKQ 175



>gi|6685480|sp|O15499|GSCL_HUMAN   Homeobox protein goosecoid-like (GSC-2)
          Length = 205

 Score = 37.7 bits (86), Expect = 0.003
 Identities = 16/46 (34%), Positives = 27/46 (58%)

Query: 170 LEKEFHFNRYLTRRRRIEIANALCLTERQIKIWFQNRRMKWKKENK 215
           LE  F  N+Y     R  +A  + L E ++++WF+NRR KW+ + +
Sbjct: 141 LEALFVQNQYPDVSTRERLAGRIRLREERVEVWFKNRRAKWRHQKR 186



>gi|6174916|sp|P54821|PRRX1_HUMAN   Paired mesoderm homeobox protein 1 (PRX-1) (Paired related homeobox
           protein 1) (Homeobox protein PHOX1)
          Length = 245

 Score = 37.4 bits (85), Expect = 0.004
 Identities = 16/46 (34%), Positives = 28/46 (60%)

Query: 170 LEKEFHFNRYLTRRRRIEIANALCLTERQIKIWFQNRRMKWKKENK 215
           LE+ F    Y     R ++A  + LTE ++++WFQNRR K+++  +
Sbjct: 109 LERVFERTHYPDAFVREDLARRVNLTEARVQVWFQNRRAKFRRNER 154



>gi|12230168|sp|Q9UBX0|HESX1_HUMAN   Homeobox expressed in ES cells 1 (Homeobox protein ANF) (hAnf)
          Length = 185

 Score = 37.4 bits (85), Expect = 0.004
 Identities = 20/46 (43%), Positives = 27/46 (58%)

Query: 170 LEKEFHFNRYLTRRRRIEIANALCLTERQIKIWFQNRRMKWKKENK 215
           LE  F  N Y     R ++A  L L E +I+IWFQNRR K K+ ++
Sbjct: 123 LENVFRVNCYPGIDIREDLAQKLNLEEDRIQIWFQNRRAKLKRSHR 168



>gi|6093787|sp|O75360|PROP1_HUMAN   Homeobox protein prophet of Pit-1 (PROP-1) (Pituitary specific
           homeodomain factor)
          Length = 226

 Score = 37.4 bits (85), Expect = 0.004
 Identities = 18/47 (38%), Positives = 28/47 (59%)

Query: 169 ELEKEFHFNRYLTRRRRIEIANALCLTERQIKIWFQNRRMKWKKENK 215
           +LE  F  N+Y     R  +A    L+E +I++WFQNRR K +K+ +
Sbjct: 83  QLESAFGRNQYPDIWARESLARDTGLSEARIQVWFQNRRAKQRKQER 129



>gi|12644475|sp|Q99811|PRRX2_HUMAN   Paired mesoderm homeobox protein 2 (PRX-2) (Paired related homeobox
           protein 2)
          Length = 253

 Score = 37.0 bits (84), Expect = 0.006
 Identities = 16/46 (34%), Positives = 28/46 (60%)

Query: 170 LEKEFHFNRYLTRRRRIEIANALCLTERQIKIWFQNRRMKWKKENK 215
           LE+ F    Y     R E+A  + L+E ++++WFQNRR K+++  +
Sbjct: 119 LERVFERTHYPDAFVREELARRVNLSEARVQVWFQNRRAKFRRNER 164



>gi|37537960|sp|Q8NHV9|PEPP1_HUMAN   Paired-like homeobox protein PEPP-1 (Ovary-, testis- and
           epididymis-expressed gene protein)
          Length = 184

 Score = 35.8 bits (81), Expect = 0.012
 Identities = 15/47 (31%), Positives = 28/47 (59%)

Query: 169 ELEKEFHFNRYLTRRRRIEIANALCLTERQIKIWFQNRRMKWKKENK 215
           ELE  F   +Y     R E+A  L +TE ++++WF+N+R + ++  +
Sbjct: 117 ELESVFRHTQYPDVPTRRELAENLGVTEDKVRVWFKNKRARCRRHQR 163



>gi|3287764|sp|O43186|CRX_HUMAN   Cone-rod homeobox protein
          Length = 299

 Score = 35.4 bits (80), Expect = 0.016
 Identities = 20/63 (31%), Positives = 35/63 (55%), Gaps = 1/63 (1%)

Query: 169 ELEKEFHFNRYLTRRRRIEIANALCLTERQIKIWFQNRRMKWKKE-NKLINSTQPSGEDS 227
           ELE  F   +Y     R E+A  + L E ++++WF+NRR K +++  +     QP G  +
Sbjct: 53  ELEALFAKTQYPDVYAREEVALKINLPESRVQVWFKNRRAKCRQQRQQQKQQQQPPGGQA 112

Query: 228 EAK 230
           +A+
Sbjct: 113 KAR 115



>gi|47117873|sp|P78414|IRX1_HUMAN   Iroquois-class homeodomain protein IRX-1 (Iroquois homeobox protein
           1) (Homeodomain protein IRXA1)
          Length = 480

 Score = 35.4 bits (80), Expect = 0.016
 Identities = 19/60 (31%), Positives = 29/60 (48%)

Query: 173 EFHFNRYLTRRRRIEIANALCLTERQIKIWFQNRRMKWKKENKLINSTQPSGEDSEAKAG 232
           E   N Y T+  +I +A    +T  Q+  WF N R + KKENK+    +   ++  A  G
Sbjct: 148 EHRKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENKVTWGARSKDQEDGALFG 207



>gi|47117874|sp|P78415|IRX3_HUMAN   Iroquois-class homeodomain protein IRX-3 (Iroquois homeobox protein
           3) (Homeodomain protein IRXB1)
          Length = 501

 Score = 35.0 bits (79), Expect = 0.021
 Identities = 17/44 (38%), Positives = 24/44 (54%)

Query: 173 EFHFNRYLTRRRRIEIANALCLTERQIKIWFQNRRMKWKKENKL 216
           E   N Y T+  +I +A    +T  Q+  WF N R + KKENK+
Sbjct: 148 EHRKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENKM 191



>gi|123402|sp|P09086|PO2F2_HUMAN   POU domain, class 2, transcription factor 2 (Octamer-binding
           transcription factor 2) (Oct-2) (OTF-2)
           (Lymphoid-restricted immunoglobulin octamer binding
           protein NF-A2)
          Length = 479

 Score = 33.9 bits (76), Expect = 0.047
 Identities = 18/45 (40%), Positives = 25/45 (55%)

Query: 170 LEKEFHFNRYLTRRRRIEIANALCLTERQIKIWFQNRRMKWKKEN 214
           LEK F  N+  T    + IA  L + +  I++WF NRR K K+ N
Sbjct: 312 LEKSFLANQKPTSEEILLIAEQLHMEKEVIRVWFCNRRQKEKRIN 356



>gi|28202257|sp|P14859|PO2F1_HUMAN   POU domain, class 2, transcription factor 1 (Octamer-binding
           transcription factor 1) (Oct-1) (OTF-1) (NF-A1)
          Length = 743

 Score = 33.1 bits (74), Expect = 0.081
 Identities = 18/45 (40%), Positives = 25/45 (55%)

Query: 170 LEKEFHFNRYLTRRRRIEIANALCLTERQIKIWFQNRRMKWKKEN 214
           LEK F  N+  T      IA+ L + +  I++WF NRR K K+ N
Sbjct: 394 LEKSFLENQKPTSEEITMIADQLNMEKEVIRVWFCNRRQKEKRIN 438



>gi|417425|sp|P32242|OTX1_HUMAN   Homeobox protein OTX1
          Length = 354

 Score = 33.1 bits (74), Expect = 0.081
 Identities = 17/52 (32%), Positives = 30/52 (57%)

Query: 170 LEKEFHFNRYLTRRRRIEIANALCLTERQIKIWFQNRRMKWKKENKLINSTQ 221
           LE  F   RY     R E+A  + L E ++++WF+NRR K +++ +  + T+
Sbjct: 53  LEALFAKTRYPDIFMREEVALKINLPESRVQVWFKNRRAKCRQQQQSGSGTK 104



>gi|417427|sp|P32243|OTX2_HUMAN   Homeobox protein OTX2
          Length = 289

 Score = 32.7 bits (73), Expect = 0.11
 Identities = 16/46 (34%), Positives = 27/46 (58%)

Query: 170 LEKEFHFNRYLTRRRRIEIANALCLTERQIKIWFQNRRMKWKKENK 215
           LE  F   RY     R E+A  + L E ++++WF+NRR K +++ +
Sbjct: 53  LEALFAKTRYPDIFMREEVALKINLPESRVQVWFKNRRAKCRQQQQ 98



>gi|2495290|sp|Q15475|SIX1_HUMAN   Homeobox protein SIX1 (Sine oculis homeobox homolog 1)
          Length = 284

 Score = 32.3 bits (72), Expect = 0.14
 Identities = 15/40 (37%), Positives = 23/40 (57%)

Query: 170 LEKEFHFNRYLTRRRRIEIANALCLTERQIKIWFQNRRMK 209
           L + +  N Y + R + E+A A  LT  Q+  WF+NRR +
Sbjct: 139 LREWYAHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQR 178



>gi|12230598|sp|Q9NPC8|SIX2_HUMAN   Homeobox protein SIX2 (Sine oculis homeobox homolog 2)
          Length = 291

 Score = 32.3 bits (72), Expect = 0.14
 Identities = 15/40 (37%), Positives = 23/40 (57%)

Query: 170 LEKEFHFNRYLTRRRRIEIANALCLTERQIKIWFQNRRMK 209
           L + +  N Y + R + E+A A  LT  Q+  WF+NRR +
Sbjct: 139 LREWYAHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQR 178



>gi|28201861|sp|Q9UKI9|PO2F3_HUMAN   POU domain, class 2, transcription factor 3 (Octamer-binding
           transcription factor 11) (Oct-11) (Transcription factor
           Skn-1) (PLA-1 protein)
          Length = 436

 Score = 32.3 bits (72), Expect = 0.14
 Identities = 17/47 (36%), Positives = 24/47 (51%)

Query: 168 LELEKEFHFNRYLTRRRRIEIANALCLTERQIKIWFQNRRMKWKKEN 214
           L LEK F  N   +      IA  L + +  +++WF NRR K K+ N
Sbjct: 294 LTLEKRFQDNPKPSSEEISMIAEQLSMEKEVVRVWFCNRRQKEKRIN 340



>gi|60416412|sp|P48742|LHX1_HUMAN   LIM/homeobox protein Lhx1 (LIM homeobox protein 1) (Homeobox
           protein Lim-1)
          Length = 406

 Score = 32.0 bits (71), Expect = 0.18
 Identities = 15/36 (41%), Positives = 22/36 (61%)

Query: 181 TRRRRIEIANALCLTERQIKIWFQNRRMKWKKENKL 216
           TR  R ++A    L  R I++WFQNRR K ++  +L
Sbjct: 206 TRHIREQLAQETGLNMRVIQVWFQNRRSKERRMKQL 241



>gi|18202938|sp|Q9H2C1|LHX5_HUMAN   LIM/homeobox protein Lhx5
          Length = 402

 Score = 32.0 bits (71), Expect = 0.18
 Identities = 15/36 (41%), Positives = 22/36 (61%)

Query: 181 TRRRRIEIANALCLTERQIKIWFQNRRMKWKKENKL 216
           TR  R ++A    L  R I++WFQNRR K ++  +L
Sbjct: 206 TRHIREQLAQETGLNMRVIQVWFQNRRSKERRMKQL 241



>gi|12230612|sp|Q9UIU6|SIX4_HUMAN   Homeobox protein SIX4 (Sine oculis homeobox homolog 4)
          Length = 760

 Score = 32.0 bits (71), Expect = 0.18
 Identities = 19/68 (27%), Positives = 34/68 (50%), Gaps = 4/68 (5%)

Query: 170 LEKEFHFNRYLTRRRRIEIANALCLTERQIKIWFQNRRMKWKK----ENKLINSTQPSGE 225
           L++ +  NRY +   +  +A    L+  Q+  WF+NRR + +     ++K  +   PS E
Sbjct: 217 LKELYKQNRYPSPAEKRHLAKITGLSLTQVSNWFKNRRQRDRNPSETQSKSESDGNPSTE 276

Query: 226 DSEAKAGE 233
           D  +K  E
Sbjct: 277 DESSKGHE 284



>gi|18202510|sp|Q15911|ATBF1_HUMAN   Alpha-fetoprotein enhancer binding protein (AT motif-binding factor)
            (AT-binding transcription factor 1)
          Length = 3703

 Score = 32.0 bits (71), Expect = 0.18
 Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 4/61 (6%)

Query: 170  LEKEFHFNRYLTRRRRIEIANALCLTERQIKIWFQNRRMKWKKENKLINSTQPSGEDSEA 229
            L+  F  N Y       +++N L L  R I +WFQN R K +K  +     Q  G+D E 
Sbjct: 2257 LQDFFDANAYPKDDEFEQLSNLLNLPTRVIVVWFQNARQKARKNYE----NQGEGKDGER 2312

Query: 230  K 230
            +
Sbjct: 2313 R 2313



 Score = 29.6 bits (65), Expect = 0.89
 Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 5/45 (11%)

Query: 173  EFHFNRYL-----TRRRRIEIANALCLTERQIKIWFQNRRMKWKK 212
            E  + +YL     TR+    IA+ + L +R +++WFQN R + +K
Sbjct: 2654 EILYQKYLLDSNPTRKMLDHIAHEVGLKKRVVQVWFQNTRARERK 2698



 Score = 29.3 bits (64), Expect = 1.2
 Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 8/48 (16%)

Query: 188  IANALCLTERQIKIWFQNRRMKWKKENKL-------INSTQPSGEDSE 228
            + N + L +R +++WFQN R K +K++KL       IN T   G  +E
Sbjct: 2979 LGNDIGLPKRVVQVWFQNARAK-EKKSKLSMAKHFGINQTSYEGPKTE 3025



 Score = 26.9 bits (58), Expect = 5.8
 Identities = 14/46 (30%), Positives = 24/46 (52%)

Query: 170  LEKEFHFNRYLTRRRRIEIANALCLTERQIKIWFQNRRMKWKKENK 215
            L + F  N   +  +  E+A+   L ++ IK WF+N   K ++ NK
Sbjct: 2160 LRQYFDINNSPSEEQIKEMADKSGLPQKVIKHWFRNTLFKERQRNK 2205



>gi|20978495|sp|Q96A47|ISL2_HUMAN   Insulin gene enhancer protein ISL-2 (Islet-2)
          Length = 359

 Score = 31.2 bits (69), Expect = 0.31
 Identities = 13/28 (46%), Positives = 20/28 (71%)

Query: 194 LTERQIKIWFQNRRMKWKKENKLINSTQ 221
           L+ R I++WFQN+R K KK++ L+   Q
Sbjct: 230 LSPRVIRVWFQNKRCKDKKKSILMKQLQ 257



>gi|730281|sp|P40426|PBX3_HUMAN   Pre-B-cell leukemia transcription factor-3 (Homeobox protein PBX3)
          Length = 434

 Score = 30.4 bits (67), Expect = 0.52
 Identities = 12/36 (33%), Positives = 21/36 (58%)

Query: 177 NRYLTRRRRIEIANALCLTERQIKIWFQNRRMKWKK 212
           N Y +   + E+A    +T  Q+  WF N+R+++KK
Sbjct: 260 NPYPSEEAKEELAKKCSITVSQVSNWFGNKRIRYKK 295



>gi|47606423|sp|P61371|ISL1_HUMAN   Insulin gene enhancer protein ISL-1 (Islet-1)
 gi|47606425|sp|P61373|ISL1_MESAU   Insulin gene enhancer protein ISL-1 (Islet-1)
 gi|47606424|sp|P61372|ISL1_MOUSE   Insulin gene enhancer protein ISL-1 (Islet-1)
 gi|47606422|sp|P61374|ISL1_RAT   Insulin gene enhancer protein ISL-1 (Islet-1)
          Length = 349

 Score = 30.0 bits (66), Expect = 0.68
 Identities = 12/28 (42%), Positives = 19/28 (67%)

Query: 194 LTERQIKIWFQNRRMKWKKENKLINSTQ 221
           L+ R I++WFQN+R K KK + ++   Q
Sbjct: 220 LSPRVIRVWFQNKRCKDKKRSIMMKQLQ 247



>gi|20141754|sp|P41778|PBX1_MOUSE   Pre-B-cell leukemia transcription factor-1 (Homeobox protein PBX1)
 gi|730279|sp|P40424|PBX1_HUMAN   Pre-B-cell leukemia transcription factor-1 (Homeobox protein PBX1)
           (Homeobox protein PRL)
          Length = 430

 Score = 29.6 bits (65), Expect = 0.89
 Identities = 12/36 (33%), Positives = 21/36 (58%)

Query: 177 NRYLTRRRRIEIANALCLTERQIKIWFQNRRMKWKK 212
           N Y +   + E+A    +T  Q+  WF N+R+++KK
Sbjct: 258 NPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKK 293



>gi|1352729|sp|P40425|PBX2_HUMAN   Pre-B-cell leukemia transcription factor-2 (Homeobox protein PBX2)
           (G17 protein)
          Length = 430

 Score = 29.6 bits (65), Expect = 0.89
 Identities = 12/36 (33%), Positives = 21/36 (58%)

Query: 177 NRYLTRRRRIEIANALCLTERQIKIWFQNRRMKWKK 212
           N Y +   + E+A    +T  Q+  WF N+R+++KK
Sbjct: 269 NPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKK 304



>gi|28380240|sp|Q9C0A1|ZFHX2_HUMAN   Zinc finger homeobox protein 2
          Length = 1427

 Score = 29.6 bits (65), Expect = 0.89
 Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 1/45 (2%)

Query: 188 IANALCLTERQIKIWFQNRRMKWKKENKLINSTQPSGEDSEAKAG 232
           +A+ L L  R + +WFQN R K +K N     + P+G  +   +G
Sbjct: 483 LASLLGLASRVVVVWFQNARQKARK-NACEGGSMPTGGGTGGASG 526



 Score = 28.1 bits (61), Expect = 2.6
 Identities = 14/35 (40%), Positives = 19/35 (54%)

Query: 194 LTERQIKIWFQNRRMKWKKENKLINSTQPSGEDSE 228
           L +R I++WFQN R K KK      +   +G  SE
Sbjct: 959 LPKRVIQVWFQNARAKEKKAKLQGTAAGSTGGSSE 993



>gi|12643415|sp|Q9UBR4|LHX3_HUMAN   LIM/homeobox protein Lhx3
          Length = 397

 Score = 29.3 bits (64), Expect = 1.2
 Identities = 13/34 (38%), Positives = 21/34 (61%)

Query: 182 RRRRIEIANALCLTERQIKIWFQNRRMKWKKENK 215
           R  R ++++   L  R +++WFQNRR K K+  K
Sbjct: 184 RHVREQLSSETGLDMRVVQVWFQNRRAKEKRLKK 217



>gi|27923801|sp|Q8TE12|LMX1A_HUMAN   LIM homeobox transcription factor 1 alpha (LIM/homeobox protein
           LMX1A) (LIM-homeobox protein 1.1) (LMX-1.1)
          Length = 382

 Score = 29.3 bits (64), Expect = 1.2
 Identities = 13/31 (41%), Positives = 20/31 (64%)

Query: 182 RRRRIEIANALCLTERQIKIWFQNRRMKWKK 212
           R+ R  +A    L+ R +++WFQN+R K KK
Sbjct: 222 RKVRETLAAETGLSVRVVQVWFQNQRAKMKK 252



>gi|20138668|sp|Q969G2|LHX4_HUMAN   LIM/homeobox protein Lhx4
          Length = 367

 Score = 29.3 bits (64), Expect = 1.2
 Identities = 13/34 (38%), Positives = 21/34 (61%)

Query: 182 RRRRIEIANALCLTERQIKIWFQNRRMKWKKENK 215
           R  R ++++   L  R +++WFQNRR K K+  K
Sbjct: 161 RHVREQLSSETGLDMRVVQVWFQNRRAKEKRLKK 194



>gi|8247930|sp|O60663|LMX1B_HUMAN   LIM homeobox transcription factor 1 beta (LIM/homeobox protein
           LMX1B) (LIM-homeobox protein 1.2) (LMX-1.2)
          Length = 379

 Score = 29.3 bits (64), Expect = 1.2
 Identities = 13/31 (41%), Positives = 20/31 (64%)

Query: 182 RRRRIEIANALCLTERQIKIWFQNRRMKWKK 212
           R+ R  +A    L+ R +++WFQN+R K KK
Sbjct: 223 RKVRETLAAETGLSVRVVQVWFQNQRAKMKK 253



>gi|8247936|sp|P50458|LHX2_HUMAN   LIM/homeobox protein Lhx2 (Homeobox protein LH-2)
          Length = 406

 Score = 28.9 bits (63), Expect = 1.5
 Identities = 10/26 (38%), Positives = 19/26 (73%)

Query: 187 EIANALCLTERQIKIWFQNRRMKWKK 212
           ++A    LT+R +++WFQN R K+++
Sbjct: 298 QLAQKTGLTKRVLQVWFQNARAKFRR 323



>gi|6094293|sp|O95343|SIX3_HUMAN   Homeobox protein SIX3 (Sine oculis homeobox homolog 3)
          Length = 332

 Score = 28.9 bits (63), Expect = 1.5
 Identities = 20/58 (34%), Positives = 32/58 (55%), Gaps = 4/58 (6%)

Query: 179 YLTRRRRIEIANALCLTERQIKIWFQNRRMKWK---KENKLIN-STQPSGEDSEAKAG 232
           Y    ++ E+A A  LT  Q+  WF+NRR + +    +N+L + +  PSG  S A+ G
Sbjct: 230 YPNPSKKRELAQATGLTPTQVGNWFKNRRQRDRAAAAKNRLQHQAIGPSGMRSLAEPG 287



>gi|127819|sp|P22736|NR4A1_HUMAN   Orphan nuclear receptor NR4A1 (Orphan nuclear receptor HMR) (Early
           response protein NAK1) (TR3 orphan receptor) (ST-59)
          Length = 598

 Score = 28.9 bits (63), Expect = 1.5
 Identities = 37/129 (28%), Positives = 48/129 (37%), Gaps = 28/129 (21%)

Query: 8   PTFPGSLPSGQ---DSFLGQLP--LYQAGYDALRPFPASYGASSLPDKTYTSPC---FYQ 59
           P  P +LPS     D + G+    LYQ          AS  ASS    + TSP    F  
Sbjct: 44  PAAPTALPSFSTFMDGYTGEFDTFLYQLPGTVQPCSSASSSASSTSSSSATSPASASFKF 103

Query: 60  QSNSVLAC--------------NRASYEYGASCFYSDKDLSGASPSGSGKQRGP--GDYL 103
           +   V  C              +  S  YG+ C       S ++PS    Q  P  G + 
Sbjct: 104 EDFQVYGCYPGPLSGPVDEALSSSGSDYYGSPCSAP----SPSTPSFQPPQLSPWDGSFG 159

Query: 104 HFSPEQQYK 112
           HFSP Q Y+
Sbjct: 160 HFSPSQTYE 168



>gi|1709437|sp|Q03052|PO3F1_HUMAN   POU domain, class 3, transcription factor 1 (Octamer-binding
           transcription factor 6) (Oct-6) (POU-domain
           transcription factor SCIP)
          Length = 448

 Score = 28.9 bits (63), Expect = 1.5
 Identities = 12/39 (30%), Positives = 22/39 (56%)

Query: 188 IANALCLTERQIKIWFQNRRMKWKKENKLINSTQPSGED 226
           +A++L L +  +++WF NRR K K+      +  P  +D
Sbjct: 369 LADSLQLEKEVVRVWFCNRRQKEKRMTPAAGAGHPPMDD 407



>gi|12643346|sp|Q9NQ69|LHX9_HUMAN   LIM/homeobox protein Lhx9
          Length = 388

 Score = 28.9 bits (63), Expect = 1.5
 Identities = 10/26 (38%), Positives = 19/26 (73%)

Query: 187 EIANALCLTERQIKIWFQNRRMKWKK 212
           ++A    LT+R +++WFQN R K+++
Sbjct: 290 QLAQKTGLTKRVLQVWFQNARAKFRR 315



>gi|37999770|sp|Q9BYU1|PBX4_HUMAN   Pre-B-cell leukemia transcription factor-4 (Homeobox protein PBX4)
          Length = 330

 Score = 28.9 bits (63), Expect = 1.5
 Identities = 13/36 (36%), Positives = 21/36 (58%)

Query: 177 NRYLTRRRRIEIANALCLTERQIKIWFQNRRMKWKK 212
           N Y +   + E+A    LT  Q+  WF N+R+++KK
Sbjct: 191 NPYPSEEAKEELARKGGLTISQVSNWFGNKRIRYKK 226



>gi|20531996|sp|Q8WXK4|AS12_HUMAN   Ankyrin repeat and SOCS box protein 12 (ASB-12)
          Length = 308

 Score = 28.9 bits (63), Expect = 1.5
 Identities = 26/98 (26%), Positives = 38/98 (38%), Gaps = 19/98 (19%)

Query: 54  SPCFYQQSNSVLACNRASYEYGASCFYSDKDLSGASPSGSGKQRGPGDYLHFSPEQQYKP 113
           +P F   S+  L C R   E            +GASP GS        Y + SP      
Sbjct: 99  TPLFTAVSHGHLDCVRVLLE------------AGASPGGS-------IYNNCSPVLTAAR 139

Query: 114 DSSSGQGKALHDEGADRKYTSPVYPWMQRMNSCAGAVY 151
           D +    + L D GA+    + +  W   + SC+G +Y
Sbjct: 140 DGAVAILQELLDHGAEANVKAKLPVWASNIASCSGPLY 177



>gi|28201884|sp|P78424|PO6F2_HUMAN   POU domain, class 6, transcription factor 2 (Retina-derived
           POU-domain factor-1) (RPF-1)
          Length = 684

 Score = 28.9 bits (63), Expect = 1.5
 Identities = 14/54 (25%), Positives = 24/54 (44%)

Query: 170 LEKEFHFNRYLTRRRRIEIANALCLTERQIKIWFQNRRMKWKKENKLINSTQPS 223
           L   F  N + + +   EIA  L      +++WF N+R   K   K +   +P+
Sbjct: 615 LNAHFEKNTHPSGQEMTEIAEKLNYDREVVRVWFCNKRQALKNTIKRLKQHEPA 668



>gi|2495306|sp|Q14863|PO6F1_HUMAN   POU domain, class 6, transcription factor 1 (mPOU homeobox protein)
           (Brain-specific homeobox/POU domain protein 5) (Brain-5)
           (Brn-5 protein)
          Length = 301

 Score = 28.5 bits (62), Expect = 2.0
 Identities = 16/47 (34%), Positives = 21/47 (44%)

Query: 170 LEKEFHFNRYLTRRRRIEIANALCLTERQIKIWFQNRRMKWKKENKL 216
           L   F  N   T +   EIA  L      +++WF NRR   K  +KL
Sbjct: 249 LNAYFEKNPLPTGQEITEIAKELNYDREVVRVWFCNRRQTLKNTSKL 295



>gi|12643905|sp|Q9UP79|ATS8_HUMAN   ADAMTS-8 precursor (A disintegrin and metalloproteinase with
           thrombospondin motifs 8) (ADAM-TS 8) (ADAM-TS8) (METH-2)
           (METH-8)
          Length = 890

 Score = 28.5 bits (62), Expect = 2.0
 Identities = 20/69 (28%), Positives = 28/69 (40%), Gaps = 8/69 (11%)

Query: 86  SGASPSGSGKQRGPGDYLHFSPEQQYKPDSSSGQGKALHDEGADRKYTSPVYPWMQRMNS 145
           +G+ P   G   GPG   H   E    P+    + K + D G      +P  PW +   +
Sbjct: 491 NGSLPWADGTPCGPG---HLCSEGSCLPEEEVERPKPVVDGG-----WAPWGPWGECSRT 542

Query: 146 CAGAVYGSH 154
           C G V  SH
Sbjct: 543 CGGGVQFSH 551



>gi|28202258|sp|P20265|PO3F2_HUMAN   POU domain, class 3, transcription factor 2 (Nervous-system
           specific octamer-binding transcription factor N-Oct-3)
           (Brain-specific homeobox/POU domain protein 2) (Brain-2)
           (Brn-2 protein)
          Length = 443

 Score = 28.1 bits (61), Expect = 2.6
 Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 1/39 (2%)

Query: 188 IANALCLTERQIKIWFQNRRMKWKKENKLINSTQPSGED 226
           +A++L L +  +++WF NRR K K+       T P  ED
Sbjct: 387 LADSLQLEKEVVRVWFCNRRQKEKRMTP-PGGTLPGAED 424



>gi|123408|sp|P28069|PIT1_HUMAN   Pituitary-specific positive transcription factor 1 (Pit-1) (Growth
           hormone factor 1) (GHF-1)
          Length = 291

 Score = 28.1 bits (61), Expect = 2.6
 Identities = 13/51 (25%), Positives = 26/51 (50%)

Query: 170 LEKEFHFNRYLTRRRRIEIANALCLTERQIKIWFQNRRMKWKKENKLINST 220
           LE+ F      + +  + +A  L L +  +++WF NRR + K+    +N +
Sbjct: 229 LERHFGEQNKPSSQEIMRMAEELNLEKEVVRVWFCNRRQREKRVKTSLNQS 279



>gi|20138948|sp|Q04721|NOTC2_HUMAN   Neurogenic locus notch homolog protein 2 precursor (Notch 2) (hN2)
          Length = 2471

 Score = 27.7 bits (60), Expect = 3.4
 Identities = 28/108 (25%), Positives = 39/108 (36%), Gaps = 31/108 (28%)

Query: 10   FPGSLPSGQDSFLGQLPLYQAGYDALRPFPASYGASSLPDKTYTSPCFYQQSNSVLACNR 69
            FP ++   QD  + Q  L      A  PFPAS G    P   ++                
Sbjct: 2353 FPTAMMPQQDGQVAQTIL-----PAYHPFPASVGKYPTPPSQHS---------------- 2391

Query: 70   ASYEYGASCFYSDKDLSGASPSGSGKQRGPGDYLHFSPEQQYKPDSSS 117
                      Y+  + +  +PS SG  +G   YL  SPE   +  SSS
Sbjct: 2392 ----------YASSNAAERTPSHSGHLQGEHPYLTPSPESPDQWSSSS 2429



>gi|400659|sp|Q01860|PO5F1_HUMAN   POU domain, class 5, transcription factor 1 (Octamer-binding
           transcription factor 3) (Oct-3) (Oct-4)
          Length = 360

 Score = 27.3 bits (59), Expect = 4.4
 Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 4/42 (9%)

Query: 188 IANALCLTERQIKIWFQNRRMKWKKENKLINSTQPSGEDSEA 229
           IA  L L +  +++WF NRR K K+     +S     ED EA
Sbjct: 263 IAQQLGLEKDVVRVWFCNRRQKGKRS----SSDYAQREDFEA 300



>gi|730052|sp|Q00325|MPCP_HUMAN   Phosphate carrier protein, mitochondrial precursor (PTP)
           (OK/SW-cl.48)
          Length = 362

 Score = 27.3 bits (59), Expect = 4.4
 Identities = 13/36 (36%), Positives = 20/36 (55%)

Query: 84  DLSGASPSGSGKQRGPGDYLHFSPEQQYKPDSSSGQ 119
           DL  +SP  +G+ R P +    + E+QY  D  SG+
Sbjct: 28  DLRSSSPGPTGQPRRPRNLAAAAVEEQYSCDYGSGR 63



>gi|28201858|sp|Q06416|PO5L_HUMAN   POU domain, class 5, transcription factor 1-like protein 1 (Octamer
           binding protein 3-like)
          Length = 359

 Score = 27.3 bits (59), Expect = 4.4
 Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 4/42 (9%)

Query: 188 IANALCLTERQIKIWFQNRRMKWKKENKLINSTQPSGEDSEA 229
           IA  L L +  +++WF NRR K K+     +S     ED EA
Sbjct: 262 IAQQLGLEKDVVRVWFCNRRQKGKRS----SSDYAQREDFEA 299



>gi|12230578|sp|O95475|SIX6_HUMAN   Homeobox protein SIX6 (Sine oculis homeobox homolog 6) (Optic
           homeobox 2) (Homeodomain protein OPTX2)
          Length = 246

 Score = 27.3 bits (59), Expect = 4.4
 Identities = 12/31 (38%), Positives = 18/31 (58%)

Query: 179 YLTRRRRIEIANALCLTERQIKIWFQNRRMK 209
           Y    ++ E+A A  LT  Q+  WF+NRR +
Sbjct: 152 YPNPSKKRELAQATGLTPTQVGNWFKNRRQR 182



>gi|28201859|sp|Q9BZV7|PO5M_HUMAN   POU domain, class 5, transcription factor 1-like protein 2
          Length = 359

 Score = 27.3 bits (59), Expect = 4.4
 Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 4/42 (9%)

Query: 188 IANALCLTERQIKIWFQNRRMKWKKENKLINSTQPSGEDSEA 229
           IA  L L +  +++WF NRR K K+     +S     ED EA
Sbjct: 262 IAQQLGLEKDVVRVWFCNRRQKGKRS----SSDYAQREDFEA 299



>gi|8134548|sp|Q9UPM6|LHX61_HUMAN   LIM/homeobox protein Lhx6.1 (Lhx6)
          Length = 363

 Score = 27.3 bits (59), Expect = 4.4
 Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 1/38 (2%)

Query: 187 EIANALCLTERQIKIWFQNRRMKWKKENKLINSTQPSG 224
           ++A+   L+ R I++WFQN R + KK     +   PSG
Sbjct: 251 KLADMTGLSRRVIQVWFQNCRARHKKHTPQ-HPVPPSG 287



>gi|1345629|sp|P49335|PO3F4_HUMAN   POU domain, class 3, transcription factor 4 (Brain-specific
           homeobox/POU domain protein 4) (Brain-4) (Brn-4)
          Length = 361

 Score = 26.9 bits (58), Expect = 5.8
 Identities = 10/25 (40%), Positives = 18/25 (72%)

Query: 188 IANALCLTERQIKIWFQNRRMKWKK 212
           +A++L L +  +++WF NRR K K+
Sbjct: 311 LADSLQLEKEVVRVWFCNRRQKEKR 335



>gi|17371773|sp|Q92934|BAD_HUMAN   Bcl2-antagonist of cell death (BAD) (Bcl-2 binding component 6)
           (Bcl-XL/Bcl-2 associated death promoter) (Bcl-2-like 8
           protein)
          Length = 168

 Score = 26.9 bits (58), Expect = 5.8
 Identities = 18/39 (46%), Positives = 23/39 (58%), Gaps = 3/39 (7%)

Query: 86  SGASPSGSGK--QRGPGDYLHFSPEQQYKPDSSSGQGKA 122
           +G  PSGSGK  ++ PG  L  +  QQ +P SSS  G A
Sbjct: 27  AGDGPSGSGKHHRQAPG-LLWDASHQQEQPTSSSHHGGA 64



>gi|2506534|sp|P20264|PO33_HUMAN   POU domain, class 3, transcription factor 3 (Brain-specific
           homeobox/POU domain protein 1) (Brain-1) (Brn-1 protein)
          Length = 500

 Score = 26.9 bits (58), Expect = 5.8
 Identities = 10/25 (40%), Positives = 18/25 (72%)

Query: 188 IANALCLTERQIKIWFQNRRMKWKK 212
           +A++L L +  +++WF NRR K K+
Sbjct: 439 LADSLQLEKEVVRVWFCNRRQKEKR 463



>gi|46396941|sp|Q8N196|SIX5_HUMAN   Homeobox protein SIX5 (DM locus-associated homeodomain protein)
          Length = 739

 Score = 26.9 bits (58), Expect = 5.8
 Identities = 12/33 (36%), Positives = 18/33 (54%)

Query: 177 NRYLTRRRRIEIANALCLTERQIKIWFQNRRMK 209
           NRY T   +  +A    L+  Q+  WF+NRR +
Sbjct: 223 NRYPTPDEKRRLATLTGLSLTQVSNWFKNRRQR 255



>gi|44889075|sp|Q9H4I2|ZHX3_HUMAN   Zinc fingers and homeoboxes protein 3 (Triple homeobox 1 protein)
          Length = 956

 Score = 26.6 bits (57), Expect = 7.6
 Identities = 14/40 (35%), Positives = 17/40 (42%)

Query: 194 LTERQIKIWFQNRRMKWKKENKLINSTQPSGEDSEAKAGE 233
           +T R+I  WF  RR K   E         S E+ EA   E
Sbjct: 651 MTRREIDSWFSERRKKVNAEETKKAEENASQEEEEAAEDE 690



 Score = 26.6 bits (57), Expect = 7.6
 Identities = 13/40 (32%), Positives = 19/40 (47%)

Query: 170 LEKEFHFNRYLTRRRRIEIANALCLTERQIKIWFQNRRMK 209
           L+  FH   Y T+     +       E Q+KIWF  +R+K
Sbjct: 319 LKNSFHKFPYPTKAELCYLTVVTKYPEEQLKIWFTAQRLK 358



>gi|21759444|sp|Q9NSC7|SI7A_HUMAN   Alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase (GalNAc
           alpha-2,6-sialyltransferase I) (ST6GalNAc I)
           (Sialyltransferase 7A)
          Length = 600

 Score = 26.6 bits (57), Expect = 7.6
 Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 3/40 (7%)

Query: 196 ERQIKIWFQNRRMKWK---KENKLINSTQPSGEDSEAKAG 232
           E Q K+    +R  WK   KE  ++N+  P G+D+   +G
Sbjct: 110 EEQDKVPHTAQRAAWKSPEKEKTMVNTLSPRGQDAGMASG 149



>gi|133326|sp|P24928|RPB1_HUMAN   DNA-directed RNA polymerase II largest subunit (RPB1)
          Length = 1970

 Score = 26.6 bits (57), Expect = 7.6
 Identities = 28/111 (25%), Positives = 39/111 (35%), Gaps = 6/111 (5%)

Query: 7    NPTFPGSLPSGQDSFLGQLPLYQAGYDALRPFPASYGASSLPDKTYTSPCFYQQSNSVLA 66
            +PT P   P     +  Q P Y     +  P   SY  +S P+ + TSP +   S S   
Sbjct: 1594 SPTSPAYEPRSPGGYTPQSPSYSPTSPSYSPTSPSYSPTS-PNYSPTSPSYSPTSPSYSP 1652

Query: 67   CNRASYEYGASCFYSDKDLSGASPSGSGKQRGPGDYLHFSPEQQYKPDSSS 117
             + +      S   +    S  SPS S     P    +      Y P S S
Sbjct: 1653 TSPSYSPTSPSYSPTSPSYSPTSPSYS-----PTSPSYSPTSPSYSPTSPS 1698



>gi|17376322|sp|Q14161|GIT2_HUMAN   ARF GTPase-activating protein GIT2 (G protein-coupled receptor
           kinase-interactor 2) (GRK-interacting protein 2)
           (Cool-interacting tyrosine-phosphorylated protein 2)
           (CAT2) (CAT-2)
          Length = 759

 Score = 26.6 bits (57), Expect = 7.6
 Identities = 34/124 (27%), Positives = 50/124 (40%), Gaps = 22/124 (17%)

Query: 2   SSYFVNPTFPGSLP-------SGQDSFL--GQLPLYQAGYDALRPFPASYGASSLPDKTY 52
           SS    P+  GS P       SGQ  +L  G+    +     L+PFPA  G S+L   + 
Sbjct: 499 SSLKRRPSARGSRPMSMYETGSGQKPYLPMGEASRPEESRMRLQPFPAHIGRSALVTSSS 558

Query: 53  TSPCF-----YQQSNSVLACNR-----ASYEYGASCFYSDKDLSGASPSGSGKQRG---P 99
           + P F     + +  S    +R     ++ E       +D +  G   S  G+QR    P
Sbjct: 559 SLPSFPSTLSWSRDESARRASRLEKQNSTPESDYDNTPNDMEPDGMGSSRKGRQRSMVWP 618

Query: 100 GDYL 103
           GD L
Sbjct: 619 GDGL 622



>gi|544357|sp|P35637|FUS_HUMAN   RNA-binding protein FUS (Oncogene FUS) (Oncogene TLS) (Translocated
           in liposarcoma protein) (POMp75) (75 kDa DNA-pairing
           protein)
          Length = 526

 Score = 26.6 bits (57), Expect = 7.6
 Identities = 25/90 (27%), Positives = 35/90 (38%), Gaps = 11/90 (12%)

Query: 42  YGASSLPDKTYTSPCFYQQSNSVLACNRASYEYGASCFYSD--KDLSGA---SPSGSGKQ 96
           YG+S     +Y     Y       A +  S  YG+S   S   +  SG+    PS  G+Q
Sbjct: 81  YGSSQSSQSSYGQQSSYPGYGQQPAPSSTSGSYGSSSQSSSYGQPQSGSYSQQPSYGGQQ 140

Query: 97  RGPGDYLHFSPEQ------QYKPDSSSGQG 120
           +  G    ++P Q      QY   S  G G
Sbjct: 141 QSYGQQQSYNPPQGYGQQNQYNSSSGGGGG 170



>gi|13626594|sp|Q15596|NCOA2_HUMAN   Nuclear receptor coactivator 2 (NCoA-2) (Transcriptional intermediary
            factor 2)
          Length = 1464

 Score = 26.6 bits (57), Expect = 7.6
 Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 1/39 (2%)

Query: 15   PSGQDSFLGQLPLYQAGYDALRPFPASYGASSLPDKTYT 53
            PSG  + +    + QA      PFP +YG S  PD  +T
Sbjct: 1279 PSGMPATMSNPRIPQANAQQF-PFPPNYGISQQPDPGFT 1316



>gi|25453452|sp|Q16236|NF2L2_HUMAN   Nuclear factor erythroid 2 related factor 2 (NF-E2 related factor
           2) (NFE2-related factor 2) (Nuclear factor, erythroid
           derived 2, like 2) (HEBP1)
          Length = 605

 Score = 26.6 bits (57), Expect = 7.6
 Identities = 24/75 (32%), Positives = 31/75 (41%), Gaps = 7/75 (9%)

Query: 53  TSPCFYQQSNSVLACNRASYEYGASCF-YSDKDLSGA-SPSGSGKQRGPGDYLHFSPEQQ 110
           TSP      +SV      S  YG +    SD ++    S  GS KQ GP   +H S +  
Sbjct: 350 TSPSVASPEHSV-----ESSSYGDTLLGLSDSEVEELDSAPGSVKQNGPKTPVHSSGDMV 404

Query: 111 YKPDSSSGQGKALHD 125
                S GQ   +HD
Sbjct: 405 QPLSPSQGQSTHVHD 419



>gi|17368438|sp|Q13064|MKR3_HUMAN   Makorin 3 (Zinc finger protein 127) (RING finger protein 63)
          Length = 507

 Score = 26.6 bits (57), Expect = 7.6
 Identities = 38/136 (27%), Positives = 54/136 (39%), Gaps = 29/136 (21%)

Query: 35  LRPFPASYGA---SSLPDKTYTSPCFYQQSNSVLACN---RASYEYGASCFYSDKDLSG- 87
           LRP PAS G    S LP ++  S  + +Q    + C        + G +C YS  DLSG 
Sbjct: 72  LRPAPASGGGAWPSPLPSRS--SGIWTKQ----IICRYYIHGQCKEGENCRYSH-DLSGR 124

Query: 88  -------ASPSGSGKQRGPGDYLHFSPEQQ---YKPDSSSGQGKALHDEGADRKYTSPVY 137
                   SP G+    GP    H  P  Q     P ++S     +    A+R +     
Sbjct: 125 KMATEGGVSPPGASAGGGPSTAAHIEPPTQEVAEAPPAASSLSLPVIGSAAERGFFE--- 181

Query: 138 PWMQRMNSCAGAVYGS 153
              +R N+  GA  G+
Sbjct: 182 --AERDNADRGAAGGA 195



>gi|44888551|sp|Q9UKY1|ZHX1_HUMAN   Zinc fingers and homeoboxes protein 1
          Length = 873

 Score = 26.2 bits (56), Expect = 9.9
 Identities = 10/15 (66%), Positives = 12/15 (80%)

Query: 195 TERQIKIWFQNRRMK 209
           TE QIKIWF  +R+K
Sbjct: 324 TEEQIKIWFSAQRLK 338



>gi|13431548|sp|Q92830|GCNL2_HUMAN   General control of amino acid synthesis protein 5-like 2 (Histone
           acetyltransferase GCN5) (hsGCN5) (STAF97)
          Length = 837

 Score = 26.2 bits (56), Expect = 9.9
 Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 8/72 (11%)

Query: 10  FPGSLPSGQDSFLG-QLPLYQAGYDA-------LRPFPASYGASSLPDKTYTSPCFYQQS 61
           FP  L   ++   G   P++++G+         L P PAS  A+ +P     SP     S
Sbjct: 356 FPKFLSMLEEEIYGANSPIWESGFTMPPSEGTQLVPRPASVSAAVVPSTPIFSPSMGGGS 415

Query: 62  NSVLACNRASYE 73
           NS L+ + A  E
Sbjct: 416 NSSLSLDSAGAE 427



>gi|38503102|sp|Q8WXU2|DYX1_HUMAN   Dyslexia susceptibility 1 candidate gene 1 protein
          Length = 420

 Score = 26.2 bits (56), Expect = 9.9
 Identities = 16/59 (27%), Positives = 26/59 (44%)

Query: 170 LEKEFHFNRYLTRRRRIEIANALCLTERQIKIWFQNRRMKWKKENKLINSTQPSGEDSE 228
           LE    + R    +++I+    LC  E+QIK   +  + K    N    +  P G +SE
Sbjct: 159 LEAWKEYQRKAEEQKKIQREEKLCQKEKQIKEGRKKIKYKSLTRNLASRNLAPKGRNSE 217



>gi|48428608|sp|Q12789|T3C1_HUMAN   General transcription factor 3C polypeptide 1 (Transcription factor
           IIIC-alpha subunit) (TF3C-alpha) (TFIIIC 220 kDa
           subunit) (TFIIIC220) (TFIIIC box B-binding subunit)
          Length = 2109

 Score = 26.2 bits (56), Expect = 9.9
 Identities = 13/42 (30%), Positives = 22/42 (52%)

Query: 82  DKDLSGASPSGSGKQRGPGDYLHFSPEQQYKPDSSSGQGKAL 123
           D  LS +S S SG+ +   + +  +P + Y P    G G++L
Sbjct: 750 DSQLSASSRSESGRMKKSDNKMGITPLRNYHPIVVPGLGRSL 791






  Database: Non-redundant SwissProt sequences
    Posted date:  Mar 15, 2005 10:11 AM
  Number of letters in database: 60,490,055
  Number of sequences in database:  164,271
  
Lambda     K      H
   0.315    0.131    0.403 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 620,191
Number of Sequences: 164271
Number of extensions: 30588
Number of successful extensions: 80
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 48
Number of HSP's gapped (non-prelim): 31
length of query: 233
length of database: 6,424,444
effective HSP length: 92
effective length of query: 141
effective length of database: 5,329,184
effective search space: 751414944
effective search space used: 751414944
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 56 (26.2 bits)