BLASTP 2.2.10 [Oct-19-2004]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

RID: 1111429658-9114-16029778303.BLASTQ2

Query= FGENESH (1), GENEid (1), GENESCAN (1): 2 exon (s)   4260
 -   5011   200 aa, chain +
         (199 letters)


Database: Non-redundant SwissProt sequences 
           164,271 sequences; 60,490,055 total letters

 
If you have any problems or questions with the results of this search 
please refer to the BLAST FAQs

Taxonomy reports

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|54039239|sp|P62424|RL7A_HUMAN  60S ribosomal protein L7a ...   237   2e-63 
gi|10720353|sp|O15078|CE29_HUMAN  Centrosomal protein Cep290       33   0.082 
gi|51701986|sp|Q7KZ85|SUP6H_HUMAN  Suppressor of Ty 6 homolo...    27   4.5   
gi|118276|sp|P07108|ACBP_HUMAN  Acyl-CoA-binding protein (AC...    26   7.7   


Alignments

>gi|54039239|sp|P62424|RL7A_HUMAN   60S ribosomal protein L7a (Surfeit locus protein 3) (PLA-X
           polypeptide)
          Length = 266

 Score =  237 bits (604), Expect = 2e-63
 Identities = 140/249 (56%), Positives = 145/249 (58%), Gaps = 54/249 (21%)

Query: 2   KQEVKKVVNPLLEKRPKNFGIGQDIQPKRDLTCFKKWSHYIRLQWQRVILCKWLKVHPEI 61
           KQE KKVVNPL EKRPKNFGIGQDIQPKRDLT F KW  YIRLQ QR IL K LKV P I
Sbjct: 21  KQEAKKVVNPLFEKRPKNFGIGQDIQPKRDLTRFVKWPRYIRLQRQRAILYKRLKVPPAI 80

Query: 62  NQFXXXXXXXXXXXXXXXXXNYRPNKRKTKQEKKQRLLVRAEKKACSKGDISTRRPLVLQ 121
           NQF                  YRP   +TKQEKKQRLL RAEKKA  KGD+ T+RP VL+
Sbjct: 81  NQFTQALDRQTATQLLKLAHKYRP---ETKQEKKQRLLARAEKKAAGKGDVPTKRPPVLR 137

Query: 122 AGVNTVTTLVENKKAQLV------------------------------------------ 139
           AGVNTVTTLVENKKAQLV                                          
Sbjct: 138 AGVNTVTTLVENKKAQLVVIAHDVDPIELVVFLPALCRKMGVPYCIIKGKARLGRLVHRK 197

Query: 140 ---------VNLEDKEALAKLVEAIRTNYNNRYDEICRHWGGNVLGPKSVARIXXXXXXX 190
                    VN EDK ALAKLVEAIRTNYN+RYDEI RHWGGNVLGPKSVARI       
Sbjct: 198 TCTTVAFTQVNSEDKGALAKLVEAIRTNYNDRYDEIRRHWGGNVLGPKSVARIAKLEKAK 257

Query: 191 XXXXXTKLG 199
                TKLG
Sbjct: 258 AKELATKLG 266



>gi|10720353|sp|O15078|CE29_HUMAN   Centrosomal protein Cep290
          Length = 1539

 Score = 32.7 bits (73), Expect = 0.082
 Identities = 20/80 (25%), Positives = 43/80 (53%), Gaps = 1/80 (1%)

Query: 87  KRKTKQEKKQRLLVRAEKKA-CSKGDISTRRPLVLQAGVNTVTTLVENKKAQLVVNLEDK 145
           K K + E  + LL +++K++ C K ++  ++    +A   T+  LVE  K+QL +  + +
Sbjct: 742 KVKAEVEDLKYLLDQSQKESQCLKSELQAQKEANSRAPTTTMRNLVERLKSQLALKEKQQ 801

Query: 146 EALAKLVEAIRTNYNNRYDE 165
           +AL++ +  +R       +E
Sbjct: 802 KALSRALLELRAEMTAAAEE 821



>gi|51701986|sp|Q7KZ85|SUP6H_HUMAN   Suppressor of Ty 6 homolog protein (Chromatin structural protein)
          Length = 1726

 Score = 26.9 bits (58), Expect = 4.5
 Identities = 14/46 (30%), Positives = 24/46 (52%)

Query: 95  KQRLLVRAEKKACSKGDISTRRPLVLQAGVNTVTTLVENKKAQLVV 140
           K+R   R E++     DI T +  +L    + VT   EN+ AQ+++
Sbjct: 816 KRRTAWREEEREKKAQDIETLKKFLLNKKPHVVTVAGENRDAQMLI 861



>gi|118276|sp|P07108|ACBP_HUMAN   Acyl-CoA-binding protein (ACBP) (Diazepam binding inhibitor) (DBI)
           (Endozepine) (EP)
          Length = 87

 Score = 26.2 bits (56), Expect = 7.7
 Identities = 12/32 (37%), Positives = 18/32 (56%)

Query: 89  KTKQEKKQRLLVRAEKKACSKGDISTRRPLVL 120
           KTK   ++ L +    K  + GDI+T RP +L
Sbjct: 17  KTKPSDEEMLFIYGHYKQATVGDINTERPGML 48






  Database: Non-redundant SwissProt sequences
    Posted date:  Mar 15, 2005 10:11 AM
  Number of letters in database: 60,490,055
  Number of sequences in database:  164,271
  
Lambda     K      H
   0.319    0.134    0.406 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 377,457
Number of Sequences: 164271
Number of extensions: 13296
Number of successful extensions: 33
Number of sequences better than 10.0: 0
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 33
Number of HSP's gapped (non-prelim): 0
length of query: 199
length of database: 6,424,444
effective HSP length: 90
effective length of query: 109
effective length of database: 5,352,994
effective search space: 583476346
effective search space used: 583476346
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)