## date Thu Mar 10 10:56:39 2005
## source-version: geneid v 1.2 -- geneid@imim.es
# Sequence hox - Length = 500000 bps
# Optimal Gene Structure. 19 genes. Score = 260.86 
# Gene 1 (Forward). 2 exons. 200 aa. Score = 7.52 
   First     4260     4676	 3.37	+ 0 0	 2.86	 0.52	17.11	 0.00	AA   1:139 hox_1
Terminal     4829     5011	 4.15	+ 0 0	 2.06	 0.00	19.78	 0.00	AA 140:200 hox_1

>hox_1|geneid_v1.2_predicted_protein_1|200_AA
MKQEVKKVVNPLLEKRPKNFGIGQDIQPKRDLTCFKKWSHYIRLQWQRVILCKWLKVHPE
INQFTQALHHQTATQLLQLAHNYRPNKRKTKQEKKQRLLVRAEKKACSKGDISTRRPLVL
QAGVNTVTTLVENKKAQLVVNLEDKEALAKLVEAIRTNYNNRYDEICRHWGGNVLGPKSV
ARIAKLEKAKAKELATKLG*

# Gene 2 (Reverse). 1 exons. 141 aa. Score = 7.47 
  Single    65008    65430	 7.47	- 0 0	 0.00	 2.93	28.03	 0.00	AA   1:141 hox_2

>hox_2|geneid_v1.2_predicted_protein_2|141_AA
MSAYAFYVQTCREEHRKKNPEVPVNFAEFSKKCSERWKTMSGKDKSKFDEITKADKMRYD
QEMKDYGPAKGAKKKKDPNASKRPLSGFFLFCSELGPKIKSTNPTISIRDMAKKLGEMWN
NLNDSEKQPYITKAAKLKEK*

# Gene 3 (Forward). 1 exons. 33 aa. Score = 1.01 
  Single   105837   105935	 1.01	+ 0 0	 5.01	 0.00	 8.76	 0.00	AA   1: 33 hox_3

>hox_3|geneid_v1.2_predicted_protein_3|33_AA
MAGIATMEEVKCKIQVLQQQADDAEERAERLQ*

# Gene 4 (Forward). 1 exons. 145 aa. Score = 10.40 
  Single   106574   107008	10.40	+ 0 0	-0.02	 0.00	39.78	 0.00	AA   1:145 hox_4

>hox_4|geneid_v1.2_predicted_protein_4|145_AA
MELQEIQLKEAKHIAEEADRKYEEVPRKLVIIEGDLECTEERAELAESRCQETDEQIRLM
DQNLKCLSDAEEKYSQKEDIYEEEIKILTDKLKEAETRAEFTERLVAKLEKTTDDLEYKL
KCNKEENLCTQRMLYQTLLDLNEM*

# Gene 5 (Forward). 2 exons. 86 aa. Score = 4.51 
   First   130268   130282	 0.70	+ 0 0	 6.61	 1.97	 1.37	 0.00	AA   1:  5 hox_5
Terminal   130360   130602	 3.81	+ 0 0	-2.28	 0.00	25.46	 0.00	AA   6: 86 hox_5

>hox_5|geneid_v1.2_predicted_protein_5|86_AA
MTKIKNPIVQPLASRRLTRNLYKCIKKAMKQKQLRRGVKEVQKFVNKGEKGIMVLAEDTL
PIEVYCHLPVMCEDRNLAYVSIPLR*

# Gene 6 (Reverse). 2 exons. 217 aa. Score = 9.57 
Terminal   176539   176894	10.77	- 2 0	 0.00	 2.30	35.97	 0.00	AA  99:217 hox_6
   First   181071   181365	-1.20	- 0 1	-1.55	 0.25	11.46	 0.00	AA   1: 99 hox_6

>hox_6|geneid_v1.2_predicted_protein_6|217_AA
MFLHRFAPYLPSPLPPLNLSCGGGVWGLWLVSGPKLSAEQGVPAAARAAQLLDAIRPTLI
NQTLSMNENVIKEINCRNTCTNKNPLTLFAGDPRPKALRKVGEYGYLGQPNAVRTNFTTK
QLTELEKEFHFNKYLTRARRVEIAASLQLNETQVKIWFQNRRMKQKKREKEGLLPISPAT
PPGNDEKAEESSEKSSSSPCVPSPGSSTSDTLTTSH*

# Gene 7 (Reverse). 4 exons. 386 aa. Score = 21.72 
Terminal   182825   183564	19.30	- 2 0	 0.00	 5.93	51.86	 0.00	AA 140:386 hox_7
Internal   186047   186193	 0.48	- 2 1	-0.49	 5.03	 6.90	 0.00	AA  91:140 hox_7
Internal   188042   188275	 2.06	- 2 1	 0.86	 2.50	12.60	 0.00	AA  13: 91 hox_7
   First   188916   188952	-0.12	- 0 1	 1.63	 5.27	 1.85	 0.00	AA   1: 13 hox_7

>hox_7|geneid_v1.2_predicted_protein_7|386_AA
MAAGAPGGCGSSGAKYYISTPGFKIGLLTDWLEEAKEGTVKGNIFIFRFKDSSRKESNSE
NADLRPASPSSPPSELEARNCFRLGIRSIGLLFPTTEPGSKHPRCPRIRKVWEAVQAARE
HSLYLNQPAPNQSDKDKKKESLEIADGSGGGSRRLRTAYTNTQLLELEKEFHFNKYLCRP
RRVEIAALLDLTERQVKVWFQNRRMKHKRQTQCKENQNSEGKCKSLEDSEKVEEDEEEKT
LFEQALSVSGALLEREGYTFQQNALSQQQAPNGHNGDSQSFPVSPLTSNEKNLKHFQHQS
PTVPNCLSTMGQNCGAGLNNDSPEALEVPSLQDFSVFSTDSCLQLSDAVSPSLPGSLDSP
VDISADSLDFFTDTLTTIDLQHLNY*

# Gene 8 (Reverse). 2 exons. 336 aa. Score = 27.55 
Terminal   190014   190819	22.49	- 2 0	 0.00	 6.96	58.28	 0.00	AA  68:336 hox_8
   First   192538   192739	 5.06	- 0 1	-0.45	 1.47	23.63	 0.00	AA   1: 68 hox_8

>hox_8|geneid_v1.2_predicted_protein_8|336_AA
MQKATYYDSSAIYGGYPYQAANGFAYNANQQPYPASAALGADGEYHRPACSLQSPSSAGG
HPKAHELSESCAGDKSPPGQASSKRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLL
NLTERQIKIWFQNRRMKYKKDQKGKGMLTSSGGQSPSRSPVPPGAGGYLNSMHSLVNSVP
YEPQSPPPFSKPPQGTYGLPPASYPASLPSCAPPPPPQKRYTAAGAGAGGTPDYDPHAHG
LQGNGSYGTPHIQGSPVFVGGSYVEPMSNSGPALFGLTHLPHAASGAMDYGGAGPLGSGH
HHGPGPGEPHPTYTDLTGHHPSQGRIQEAPKLTHL*

# Gene 9 (Forward). 6 exons. 348 aa. Score = 4.60 
   First   198113   198545	-0.21	+ 0 1	 2.12	 0.46	 8.10	 0.00	AA   1:145 hox_9
Internal   201822   201847	 0.48	+ 2 0	 4.57	 2.69	 2.80	 0.00	AA 145:153 hox_9
Internal   204062   204125	 0.68	+ 0 1	 3.42	 1.87	 6.27	 0.00	AA 154:175 hox_9
Internal   205528   205737	 0.21	+ 2 1	 2.84	 2.70	 4.71	 0.00	AA 175:245 hox_9
Internal   206430   206597	 3.00	+ 2 1	 2.83	 3.42	10.62	 0.00	AA 245:301 hox_9
Terminal   217609   217751	 0.44	+ 2 0	 5.57	 0.00	 6.48	 0.00	AA 301:348 hox_9

>hox_9|geneid_v1.2_predicted_protein_9|348_AA
MPIVDFHLQKLPAAAAAPFLDKSHSSSPGSPKTAELFFTERTPWFHQFPQIPVAPDLSSR
GTRRKDFLSTRRILGAAKVPVVSFYHSRGVLLKASERASGGSKAVQPGRKVRNIVGKKRH
QNHRIERKIIEEMYLPVRVKLAFREEQKGSDENEEPMMSPDERRKKTRCLRRPKVFATLS
CPLTSKWSPSRQSAFWEWEMMGKEERIVRSPDPGLEKFCAPLGLCGPFASTDLSLPRLPL
HSDPAFPSVNQNITNCLRIRPTSSPKPGCDRRKPKPELTFPRTRRAPWTRRNPAEKAPRS
DLRTLCIQRTVVSEKAYSVFENCKDYILQEVSVFAFILTHFRGHHVY*

# Gene 10 (Reverse). 2 exons. 232 aa. Score = 15.17 
Terminal   223934   224184	 6.18	- 2 0	 0.00	 3.43	22.81	 0.00	AA 149:232 hox_10
   First   225145   225589	 8.98	- 0 1	 1.71	 4.20	26.09	 0.00	AA   1:149 hox_10

>hox_10|geneid_v1.2_predicted_protein_10|232_AA
MHSGRYGYGYNGMDLSVGRSGSGHFGSGERARSYAASASAAPAEPRYSQPATSTHSPQPD
PLPCSAVAPSPGSDSHHGGKNSLSNSSGASADAGSTHISSREGVGTASGAEEDAPASSEQ
ASAQSEPSPAPPAQPQIYPWMRKLHISHDNIGGPEGKRARTAYTRYQTLELEKEFHFNRY
LTRRRRIEIAHALCLSERQIKIWFQNRRMKWKKDNKLKSMSMAAAGGAFRP*

# Gene 11 (Reverse). 2 exons. 234 aa. Score = 23.31 
Terminal   227757   228016	13.75	- 2 0	 0.00	 4.13	40.67	 0.00	AA 148:234 hox_11
   First   229407   229848	 9.56	- 0 1	 3.82	 2.35	27.14	 0.00	AA   1:148 hox_11

>hox_11|geneid_v1.2_predicted_protein_11|234_AA
MSSYFVNPTFPGSLPSGQDSFLGQLPLYQAGYDALRPFPASYGASSLPDKTYTSPCFYQQ
SNSVLACNRASYEYGASCFYSDKDLSGASPSGSGKQRGPGDYLHFSPEQQYKPDSSSGQG
KALHDEGADRKYTSPVYPWMQRMNSCAGAVYGSHGRRGRQTYTRYQTLELEKEFHFNRYL
TRRRRIEIANALCLTERQIKIWFQNRRMKWKKENKLINSTQPSGEDSEAKAGE*

# Gene 12 (Reverse). 3 exons. 267 aa. Score = 18.55 
Terminal   230855   231078	-2.52	- 2 0	 0.00	 1.17	 4.44	 0.00	AA 193:267 hox_12
Internal   237124   237321	11.04	- 2 1	-0.10	 3.49	35.03	 0.00	AA 127:193 hox_12
   First   238266   238644	10.03	- 0 1	 3.78	-0.85	33.19	 0.00	AA   1:127 hox_12

>hox_12|geneid_v1.2_predicted_protein_12|267_AA
MSSSYYVNALFSKYTAGASLFQNAEPTSCSFAPNSQRSGYGAGAGAFASTVPGLYNVNSP
LYQSPFASGYGLGADAYGNLPCASYDQNIPGLCSDLAKGACDKTDEGALHGAAEANFRIY
PWMRSSGPDRKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQN
RRMKWKKEHKDEGRAVKRAAPGQCRLSGAPETEPINYPAALGPAELPSVPSLARASASSV
PLECGQRDSTSGFLSASALSGSRSGC*

# Gene 13 (Reverse). 2 exons. 273 aa. Score = 25.50 
Terminal   245702   245940	11.33	- 2 0	 0.00	 6.64	30.87	 0.00	AA 194:273 hox_13
   First   246977   247556	14.17	- 0 1	 2.54	 3.14	39.40	 0.00	AA   1:194 hox_13

>hox_13|geneid_v1.2_predicted_protein_13|273_AA
MATTGALGNYYVDSFLLGADAADELSVGRYAPGTLGQPPRQAATLAEHPDFSPCSFQSKA
TVFGASWNPVHAAGANAVPAAVYHHHHHHPYVHPQAPVAAAAPDGRYMRSWLEPTPGALS
FAGLPSSRPYGIKPEPLSARRGDCPTLDTHTLSLTDYACGSPPVDREKQPSEGAFSENNA
ENESGGDKPPIDPNNPAANWLHARSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVA
RLLNLTERQVKIWFQNRRMKMKKINKDRAKDE*

# Gene 14 (Reverse). 3 exons. 282 aa. Score = 20.45 
Terminal   253998   254272	 7.34	- 2 0	 0.00	 2.26	27.45	 0.00	AA 191:282 hox_14
Internal   255448   255922	12.38	- 0 1	 2.54	 3.96	33.69	 0.00	AA  33:191 hox_14
   First   261914   262009	 0.74	- 0 0	 0.02	 7.33	 3.33	 0.00	AA   1: 32 hox_14

>hox_14|geneid_v1.2_predicted_protein_14|282_AA
MAHFRSMSKPPGSREPQHDSWPLFASDTKSSTNIKEESSYCLYDSADKCPKVSATAAELA
PFPRGPPPDGCALGTSSGVPVPGYFRLSQAYGTAKGYGSGGGGAQQLGAGPFPAQPPGRG
FDLPPALASGSADAARKERALDSPPPPTLACGSGGGSQGDEEAHASSSAAEELSPAPSES
SKASPEKDSLGNSKGENAANWLTAKSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEI
SRSVHLTDRQVKIWFQNRRMKLKKMNRENRIRELTANFNFS*

# Gene 15 (Reverse). 3 exons. 184 aa. Score = 10.85 
Terminal   264895   265127	 7.34	- 2 0	 0.00	 7.24	20.00	 0.00	AA 107:184 hox_15
Internal   266223   266280	-3.13	- 0 1	 2.04	 5.77	-7.04	 0.00	AA  88:107 hox_15
   First   266857   267117	 6.64	- 0 0	-0.74	 3.34	25.18	 0.00	AA   1: 87 hox_15

>hox_15|geneid_v1.2_predicted_protein_15|184_AA
MTYSYSSNLPQVQPVREVTFREYAIEPATKWHPRGNLAHCYSAEELVHRDCLQAPSAAGV
PGDVLAKSSANVYHHPTPAVSSNFYSTLPSPAARPRSGPAPGWGAGGGQRTRKKRCPYTK
YQIRELEREFFFSVYINKEKRLQLSRMLNLTDRQVKIWFQNRRMKEKKINRDRLQYYSAN
PLL*

# Gene 16 (Reverse). 2 exons. 179 aa. Score = 12.37 
Terminal   280297   280541	 6.26	- 2 0	 0.00	 6.31	18.68	 0.00	AA  98:179 hox_16
   First   281255   281546	 6.11	- 0 1	 2.33	 2.13	21.10	 0.00	AA   1: 98 hox_16

>hox_16|geneid_v1.2_predicted_protein_16|179_AA
MDTAGPAAEEFSSRAKEFAFYHQGYAAGPYHHHQPMPGYLDMPVVPGLGGPGESRHEPLG
LPMESYQPWALPNGWNGQMYCPKEQAQPPHLWKSTLPDVVSHPSDASSYRRGRKKRVPYT
KVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKVINKLKTTS*

# Gene 17 (Reverse). 5 exons. 135 aa. Score = 3.21 
Terminal   283588   283595	-1.89	- 2 0	 0.00	 5.19	 0.00	 0.00	AA 133:135 hox_17
Internal   284544   284635	 3.30	- 1 1	 3.70	 4.31	 8.74	 0.00	AA 102:133 hox_17
Internal   287163   287393	 0.01	- 1 2	-1.51	 5.59	 6.40	 0.00	AA  25:102 hox_17
Internal   323304   323323	 1.40	- 0 2	 6.29	 5.04	-0.99	 0.00	AA  19: 25 hox_17
   First   323648   323701	 0.39	- 0 0	 4.02	 0.51	 6.66	 0.00	AA   1: 18 hox_17

>hox_17|geneid_v1.2_predicted_protein_17|135_AA
MAFEVEESEVAENALKQQQSPSFYSRTEFSGPSRARPAPRLSDPQVTSWVARAPAVQQAG
VPRGLAAHCEKAFPPSSRALHQAPSASNACSGPFREGCFQLQVRGYGEVGGGGKNVELAL
AAVCTGSCAMARGI*

# Gene 18 (Forward). 3 exons. 318 aa. Score = 24.28 
   First   325400   325556	 2.44	+ 0 1	 3.12	 0.86	12.62	 0.00	AA   1: 53 hox_18
Internal   327147   327403	 7.16	+ 2 0	 1.95	 3.11	22.80	 0.00	AA  53:138 hox_18
Terminal   327985   328524	14.68	+ 0 0	 6.48	 0.00	39.48	 0.00	AA 139:318 hox_18

>hox_18|geneid_v1.2_predicted_protein_18|318_AA
MLGPGPPAPSVDSLSGQGQPSSSDTESDFYEEIEVSCTPDCATGNAEYQHSKGSGSEALV
GSPNGGSETPKSNGGSGGGGSQGTLACSASDQMRRYRTAFTREQIARLEKEFYRENYVSR
PRRCELAAALNLPETTIKVWFQNRRMKDKRQRLAMTWPHPADPAFYTYMMSHAAAAGGLP
YPFPSHLPLPYYSPVGLGAASAASAAASPFSGSLRPLDTFRVLSQPYPRPELLCAFRHPP
LYPGPAHGLGASAGGPCSCLACHSGPANGLAPRAAAASDFTCASTSRSDSFLTFAPSVLS
KASSVALDQREEVPLTR*

# Gene 19 (Reverse). 4 exons. 246 aa. Score = 12.83 
Terminal   351431   351631	 5.39	- 0 0	 0.00	 1.22	24.15	 0.00	AA 180:246 hox_19
Internal   351712   351839	 5.07	- 2 0	-0.75	 2.06	23.22	 0.00	AA 137:179 hox_19
Internal   385031   385249	 2.76	- 2 1	 0.54	 3.23	14.99	 0.00	AA  64:137 hox_19
Internal   423961   424150	-0.40	- 0 1	 0.53	 0.83	10.72	 0.00	AA   1: 64 hox_19

>hox_19|geneid_v1.2_predicted_protein_19|246_AA
ALFGQLGQKQIEMELEVSKFHWRVTPVKEEKWEAGLERKNCQTIGQSGQSLCQLIDSSTV
KTAPQKNSSGTEDAGSKPKRALHRGARDPGIHPRAGSTPHLTEGYSLMGTEDPRYKEEFP
SLSDPYQSQLSPGFKLKQAAAVAYAAMAKIKARDLHEKEELLKQLDDLKVELSQLHVAKT
QKEKLRKFYKGKKYKPLDLWPKKTRAMCCRFNKHKENLKTKKRQRKERLCLLRKYAVKAR
VARCQ*