## date Thu Mar 17 18:43:53 2005 ## source-version: geneid v 1.2 -- geneid@imim.es # Sequence Apo_ - Length = 500000 bps # Optimal Gene Structure. 9 genes. Score = 217.26 # Gene 1 (Forward). 1 exons. 110 aa. Score = 4.83 Terminal 8455 8784 4.83 + 0 0 3.02 0.00 20.04 0.00 AA 1:110 Apo__1 >Apo__1|geneid_v1.2_predicted_protein_1|110_AA FSLLYQNTSSSARILALIVLVSSARQTRNYPPNQAQVGGPGSPSGTLDLDLLWHLPGELR TWKFPNGEEDKRASALPSSPSPNLKPEIPKLSLRDLKVKGQHGEEDAIL* # Gene 2 (Forward). 3 exons. 125 aa. Score = 0.12 First 27356 27436 -1.40 + 0 0 2.14 0.30 5.34 0.00 AA 1: 27 Apo__2 Internal 53032 53149 2.60 + 0 1 2.52 5.34 7.20 0.00 AA 28: 67 Apo__2 Terminal 68952 69127 -1.07 + 2 0 5.74 0.00 1.21 0.00 AA 67:125 Apo__2 >Apo__2|geneid_v1.2_predicted_protein_2|125_AA MDLHRQVNRSTPATLGNLAPKQDTNNHVPVPSSKLFIIIISDVKSMMPWTKWALSDYPMQ GQALNAGQHWGLPWHPELTLTAAHSMYWVKIAVSLTHPELLEVKGCMLFTISDIEEFNDY LVKD* # Gene 3 (Reverse). 2 exons. 47 aa. Score = 1.20 Terminal 72302 72412 1.48 - 0 0 0.00 5.54 7.90 0.00 AA 11: 47 Apo__3 First 108757 108786 -0.28 - 0 0 4.71 -0.06 4.82 0.00 AA 1: 10 Apo__3 >Apo__3|geneid_v1.2_predicted_protein_3|47_AA MLNANLEPTQVVLEATVFQYAVVSLADNTPHPHAYNRAVSLGSREK* # Gene 4 (Reverse). 10 exons. 620 aa. Score = 39.82 Terminal 162093 162186 1.06 - 1 0 0.00 3.81 10.68 0.00 AA 589:620 Apo__4 Internal 170757 170838 0.72 - 2 2 5.44 3.45 2.23 0.00 AA 562:589 Apo__4 Internal 171377 171561 7.01 - 1 1 2.60 4.23 21.03 0.00 AA 500:562 Apo__4 Internal 171880 172018 3.95 - 2 2 3.92 4.06 11.65 0.00 AA 454:500 Apo__4 Internal 172685 172790 2.01 - 0 1 2.73 3.31 9.71 0.00 AA 419:454 Apo__4 Internal 174346 174563 2.79 - 2 0 2.30 4.09 11.13 0.00 AA 346:418 Apo__4 Internal 176164 176877 12.22 - 2 1 4.31 4.55 31.00 0.00 AA 108:346 Apo__4 Internal 178973 179057 2.34 - 0 1 4.55 2.30 9.32 0.00 AA 80:108 Apo__4 Internal 183740 183833 3.61 - 1 0 2.07 4.20 13.37 0.00 AA 48: 79 Apo__4 First 186433 186575 4.12 - 0 2 2.99 9.14 4.61 0.00 AA 1: 48 Apo__4 >Apo__4|geneid_v1.2_predicted_protein_4|620_AA MAAAPPLSKAEYLKRYLSGADAGVDRGSESGRKRRKKRPKPGGAGGKGMRIVDDDVSWTA ISTTKLEKEEEEDDGDLPVVAEFVDERPEEVKQMEAFRSSAKWKLLGGHNEDLPSNRHFR HDTPDSSPRRVRHGTPDPSPRKDRHDTPDPSPRRARHDTPDPSPLRGARHDSDTSPPRRI RHDSSDTSPPRRARHDSPDPSPPRRPQHNSSGASPRRVRHDSPDPSPPRRARHGSSDISS PRRVHNNSPDTSRRTLGSSDTQQLRRARHDSPDLAPNVTYSLPRTKSGKAPERASSKTSP HWKESGASHLSFPKNSKYEYDPDISPPRKKQAKSHFGDKKQLDSKGDCQKATDSDLSSPR HKQSPGHQDSDSDLSPPRNRPRHRSSDSDLSPPRRRQRTKSSDSDLSPPRRSQPPGKKAA HMYSGAKTGLVLTDIQREQQELKEQDQETMAFEAEFQYAETVFRDKSGRKRNLKLERLEQ RRKAEKDSERDELYAQWGKGLAQSRQQQQNVEDAMKEMQKPLARYIDDEDLDRMLREQER EGDPMANFIKKNKAKENKNKKVRPRYSGPAPPPNRFNIWPGYRWDGVDRSNGFEQKRFAR LASKKAVEELAYKWSVEDM* # Gene 5 (Reverse). 13 exons. 402 aa. Score = 26.32 Terminal 192536 192670 2.26 - 0 0 0.00 4.28 12.98 0.00 AA 358:402 Apo__5 Internal 193383 193448 2.48 - 0 0 1.04 6.85 6.86 0.00 AA 336:357 Apo__5 Internal 195769 195855 1.60 - 0 0 5.38 3.04 5.11 0.00 AA 307:335 Apo__5 Internal 196530 196640 2.21 - 0 0 4.05 2.21 9.88 0.00 AA 270:306 Apo__5 Internal 197141 197230 1.16 - 0 0 2.47 3.51 6.44 0.00 AA 240:269 Apo__5 Internal 197989 198059 2.60 - 2 0 2.89 3.41 9.54 0.00 AA 216:239 Apo__5 Internal 198466 198532 -0.30 - 0 1 -1.84 5.53 6.22 0.00 AA 194:216 Apo__5 Internal 198710 198757 1.31 - 0 0 2.28 4.24 5.99 0.00 AA 178:193 Apo__5 Internal 199125 199247 4.22 - 0 0 4.02 3.41 11.90 0.00 AA 137:177 Apo__5 Internal 199407 199493 3.13 - 0 0 4.05 3.80 8.56 0.00 AA 108:136 Apo__5 Internal 200122 200192 -0.33 - 2 0 3.70 2.08 3.00 0.00 AA 84:107 Apo__5 Internal 200580 200670 5.49 - 0 1 5.50 5.99 8.99 0.00 AA 54: 84 Apo__5 First 201093 201251 0.50 - 0 0 3.65 -0.92 9.65 0.00 AA 1: 53 Apo__5 >Apo__5|geneid_v1.2_predicted_protein_5|402_AA MTRLLLTKIPFFREIIVSSFSCEHCGWNNTEIQSAGRIQDQGVRYTLSVRALEDMNREVV KTDSAATRIPELDFEIPAFSQKGALTTVEGLITRAISGLEQDQPARRANKDATAERIDEF IVKLKELKQVASPFTLIIDDPSGNSFVENPHAPQKDDALVITHYNRTRQQEEMLGLQEEA PAEKPEEEDLRNEVLQFSTNCPECNAPAQTNMKLVQIPHFKEVIIMATNCENCGHRTNEV KSGGAVEPLGTRITLHITDASDMTRDLLKSETCSVEIPELEFELGMAVLGGKFTTLEGLL KDIRELVTKNPFTLGDSSNPGQTERLQEFSQKMDQIIEGNMKAHFIMDDPAGNSYLQNVY APEDDPEMKVERYKRTFDQNEELGLNDMKTEGYEAGLAPQR* # Gene 6 (Reverse). 4 exons. 551 aa. Score = 61.44 Terminal 203739 204678 32.66 - 1 0 0.00 4.46 87.46 0.00 AA 238:551 Apo__6 Internal 205197 205308 1.55 - 2 2 1.87 3.90 7.70 0.00 AA 201:238 Apo__6 Internal 234361 234400 -0.39 - 0 1 3.65 2.71 1.99 0.00 AA 188:201 Apo__6 First 234619 235179 27.62 - 0 0 -0.40 2.35 78.61 0.00 AA 1:187 Apo__6 >Apo__6|geneid_v1.2_predicted_protein_6|551_AA MERVLRENADSLQASLRPHADELKAKIDQNVEELKGRLTPYADEFKVKIDQTVEELRRSL APYAQDTQEKLNHQLEGLTFQMKKNAEELKARISASAEELRQRLAPLAEDVRGNLRGNTE GLQKSLAELGGHLDQQVEEFRRRVEPYGENFNKALVQQMEQLRQKLGPHAGDVEGHLSFL EKDLRDKKFWYELEDTCPVGAFSATQARKGFWDYFSQTSGDKGRVEQIHQQKMAREPATL KDSLEQDLNNMNKFLEKLRPLSGSEAPRLPQDPVGMRRQLQEELEEVKARLQPYMAEAHE LVGWNLEGLRQQLKPYTMDLMEQVALRVQELQEQLRVVGEDTKAQLLGGVDEAWALLQGL QSRVVHHTGRFKELFHPYAESLVSGIGRHVQELHRSVAPHAPASPARLSRCVQVLSRKLT LKAKALHARIQQNLDQLREELSRAFAGTGTEEGAGPDPQMLSEEVRQRLQAFRQDTYLQI AAFTRAIDQETEEVQQQLAPPPPGHSAFAPEFQQTDSGKVLSKLQARLDDLWEDITHSLH DQGHSHLGDP* # Gene 7 (Reverse). 2 exons. 60 aa. Score = 2.64 Terminal 236266 236396 1.51 - 2 0 0.00 2.39 12.69 0.00 AA 17: 60 Apo__7 First 236754 236802 1.13 - 0 1 3.86 1.81 6.83 0.00 AA 1: 17 Apo__7 >Apo__7|geneid_v1.2_predicted_protein_7|60_AA MFLKAVVLTLALVAVAGARAEVSADQVATVMWDYFSQLSNNAKEAVEHLQKSELTQQLK* # Gene 8 (Forward). 2 exons. 69 aa. Score = 0.22 First 244422 244507 0.88 + 0 2 1.01 0.84 11.93 0.00 AA 1: 29 Apo__8 Terminal 246375 246495 -0.66 + 1 0 2.07 0.00 7.76 0.00 AA 29: 69 Apo__8 >Apo__8|geneid_v1.2_predicted_protein_8|69_AA MQGYMKHATKTAKDALSSVQESQVAQQARGWVTDGFSSLKDYWSTVKDKFSEFWDLDPEV RPTSAVAA* # Gene 9 (Reverse). 27 exons. 1392 aa. Score = 80.68 Terminal 249419 250022 28.47 - 1 0 0.00 3.28 78.77 0.00 AA 1191:1392 Apo__9 Internal 250612 250768 3.33 - 2 2 3.21 3.44 10.83 0.00 AA 1139:1191 Apo__9 Internal 250956 251018 0.99 - 2 1 3.07 4.14 4.17 0.00 AA 1118:1139 Apo__9 Internal 261087 261219 3.58 - 0 1 2.97 5.59 8.61 0.00 AA 1074:1118 Apo__9 Internal 262731 262894 0.57 - 2 0 0.02 4.41 7.29 0.00 AA 1019:1073 Apo__9 Internal 271421 271673 0.31 - 0 1 5.50 -0.90 6.36 0.00 AA 935:1019 Apo__9 Internal 272040 272310 2.38 - 1 0 0.58 4.24 11.23 0.00 AA 844:934 Apo__9 Internal 272876 273215 7.97 - 2 2 5.38 4.12 18.17 0.00 AA 731:844 Apo__9 Internal 274885 274994 -0.31 - 1 1 3.67 4.80 0.26 0.00 AA 694:731 Apo__9 Internal 275452 275537 0.45 - 0 2 2.45 4.50 4.43 0.00 AA 666:694 Apo__9 Internal 275813 275938 2.07 - 0 0 1.51 4.41 10.04 0.00 AA 624:665 Apo__9 Internal 277279 277429 4.01 - 1 0 2.87 2.86 13.93 0.00 AA 573:623 Apo__9 Internal 281557 281700 3.37 - 1 2 2.52 4.75 11.29 0.00 AA 525:573 Apo__9 Internal 283942 284012 1.98 - 0 2 2.08 6.52 5.81 0.00 AA 502:525 Apo__9 Internal 287092 287247 2.23 - 0 0 1.59 4.82 8.46 0.00 AA 450:501 Apo__9 Internal 287514 287667 1.64 - 1 0 1.24 2.44 11.07 0.00 AA 398:449 Apo__9 Internal 288769 288878 1.55 - 0 2 3.67 2.81 7.89 0.00 AA 362:398 Apo__9 Internal 289477 289620 1.56 - 0 0 2.83 4.59 5.26 0.00 AA 314:361 Apo__9 Internal 289864 289974 1.41 - 0 0 1.41 4.04 7.86 0.00 AA 277:313 Apo__9 Internal 290535 290684 1.95 - 0 0 2.75 2.30 11.04 0.00 AA 227:276 Apo__9 Internal 309419 309474 -0.97 - 2 0 1.33 5.76 0.69 0.00 AA 208:226 Apo__9 Internal 309864 309987 2.26 - 0 1 5.66 1.32 8.93 0.00 AA 167:208 Apo__9 Internal 310804 310928 2.17 - 2 0 3.39 4.27 7.69 0.00 AA 125:166 Apo__9 Internal 340830 340991 3.89 - 2 1 4.44 3.79 11.12 0.00 AA 71:125 Apo__9 Internal 367655 367718 0.31 - 0 1 3.66 2.92 4.66 0.00 AA 50: 71 Apo__9 Internal 370559 370675 3.47 - 0 0 3.72 5.34 8.81 0.00 AA 11: 49 Apo__9 Internal 374912 374941 0.08 - 0 0 3.54 5.10 0.98 0.00 AA 1: 10 Apo__9 >Apo__9|geneid_v1.2_predicted_protein_9|1392_AA KTPTFQFAAKVAIKIIDKTQLDEENLKKIFREVQIMKMLCHPHIIRLYQVMETERMIYLV TEYASGGEIFDHLVAHGRMAEKEARRKFKQIVTAVYFCHCRNIVHRDLKAENLLLDANLN IKIADFGFSNLFTPGQLLKTWCGSPPYAAPELFEGKEYDGPKVDIWSLGVVLYVLVCGAL PFDGSTLQNLRARVLSGKFRIPFFMSTGYFHLLGSHCNVVLNAKDKRLKAGCLSIAECEH LIRHMLVLDPNKRLSMEQICKHKWMKLGDADPNFDRLIAECQQLKEERQVDPLNEDVLLA MEDMGLDKEQTLQSLRSDAYDHYSAIYSLLCDRHKRHKTLRLGALPSMPRALAFQAPVNI QPDGTLNLDSDEGEEPSPEALVRYLSMRRHTVGVADPRTEVMEDLQKLLPGFPGVNPQAP FLQVAPNVNFMHNLLPMQNLQPTGQLEYKEQSLLQPPTLQLLNGMGPLGRRASDGGANIQ LHAQQLLKRPRGPSPLVTMTPAVPAVTPVDEESSDGEPDQEAVQRYLANRSKRHTLAMTN PTAEIPPDLQRQLGQQPFRSRVWPPHLVPDQHRSTYKDSNTLHLPTERFSPVRRFSDGAA SIQAFKAHLEKMGNNSSIKQLQQECEQLQKMYGGQIDERTLEKTQQQHMLYQQEQHHQIL QQQIQDSICPPQPSPPLQAACENQPALLTHQLQRLRIQPSSPPPNHPNNHLFRQPSNSPP PMSSAMIQPHGAASSSQFQGLPSRSAIFQQQPENCSSPPNVALTCLGMQQPAQSQQVTIQ VQEPVDMLSNMPGTAAGSSGRGISISPSAGQMQMQHRTNLMATLSYGHRPLSKQLSADSA EAHSLNVNRFSPANYDQAHLHPHLFSDQSRGSPSSYSPSTGVGFSPTQALKVPPLDQFPT FPPSAHQQPPHYTTSALQQALLSPTPPDYTRHQQPALMHSESMEEDCSCEGAKDGFQDSK SSSTLTKGCHDSPLLLSTGGPGDPESLLGTVSHAQELGIHPYGHQPTAAFSKNKVPSREP VIGNCMDRSSPGQAVELPDHNGLGYPARPSVHEHHRPRALQRHHTIQNSDDAYVQLDNLP GMSLVAGKALSSARMSDAVLSQSSLMGSQQFQDGENEGPPRPFRMKAAVLTLAVLFLTGS QARHFWQQDEPPQSPWDRVKDLATVYVDVLKDSGRDYVSQFEGSALGKQLNLKLLDNWDS VTSTFSKLREQLGPVTQEFWDNLEKETEGLRQEMSKDLEEVKAKVQPYLDDFQKKWQEEM ELYRQKVEPLRAELQEGARQKLHELQEKLSPLGEEMRDRARAHVDALRTHLAPYSDELRQ RLAARLEALKENGGARLAEYHAKATEHLSTLSEKAKPALEDLRQGLLPVLESFKVSFLSA LEEYTKKLNTQ*