fgenesh Fri Mar 11 10:19:52 GMT 2005 FGENESH 1.1 Prediction of potential genes in Homo_sapiens genomic DNA Time : Fri Mar 11 10:19:55 2005 Seq name: Apo_ Length of sequence: 500000 Number of predicted genes 6 in +chain 2 in -chain 4 Number of predicted exons 75 in +chain 18 in -chain 57 Positions of predicted genes and exons: G Str Feature Start End Score ORF Len 1 + TSS 1868 -7.49 1 + 1 CDSf 3130 - 3194 5.96 3130 - 3192 63 1 + 2 CDSi 6002 - 6158 1.04 6003 - 6158 156 1 + 3 CDSi 8455 - 8745 15.15 8455 - 8745 291 1 + 4 CDSi 16556 - 16663 1.12 16556 - 16663 108 1 + 5 CDSi 24101 - 24285 8.42 24101 - 24283 183 1 + 6 CDSi 25599 - 25662 0.30 25600 - 25662 63 1 + 7 CDSi 49355 - 49459 0.55 49355 - 49459 105 1 + 8 CDSi 50067 - 50144 1.12 50067 - 50144 78 1 + 9 CDSi 53032 - 53149 6.99 53032 - 53148 117 1 + 10 CDSi 55386 - 55646 3.45 55388 - 55645 258 1 + 11 CDSi 105286 - 105565 3.49 105288 - 105563 276 1 + 12 CDSi 106690 - 106807 -1.92 106691 - 106807 117 1 + 13 CDSi 132799 - 132867 5.19 132799 - 132867 69 1 + 14 CDSi 133530 - 133666 1.82 133530 - 133664 135 1 + 15 CDSl 139414 - 139570 7.78 139415 - 139570 156 1 + PolA 140127 1.12 2 - PolA 161041 -1.08 2 - 1 CDSl 162093 - 162186 5.60 162093 - 162185 93 2 - 2 CDSi 170757 - 170838 2.02 170759 - 170836 78 2 - 3 CDSi 171377 - 171561 19.74 171378 - 171560 183 2 - 4 CDSi 171880 - 172018 8.64 171882 - 172016 135 2 - 5 CDSi 172685 - 172790 7.12 172686 - 172790 105 2 - 6 CDSi 174346 - 174563 -0.03 174346 - 174561 216 2 - 7 CDSi 176164 - 176877 12.00 176165 - 176875 711 2 - 8 CDSi 178973 - 179057 12.10 178974 - 179057 84 2 - 9 CDSi 183740 - 183833 11.96 183740 - 183832 93 2 - 10 CDSf 186433 - 186575 31.32 186435 - 186575 141 2 - TSS 187107 -6.49 3 - PolA 192183 1.12 3 - 1 CDSl 192536 - 192670 14.36 192536 - 192670 135 3 - 2 CDSi 193383 - 193448 5.61 193383 - 193448 66 3 - 3 CDSi 195769 - 195855 3.96 195769 - 195855 87 3 - 4 CDSi 196530 - 196640 18.12 196530 - 196640 111 3 - 5 CDSi 197141 - 197230 4.60 197141 - 197230 90 3 - 6 CDSi 197989 - 198042 3.61 197989 - 198042 54 3 - 7 CDSi 198470 - 198532 5.89 198470 - 198532 63 3 - 8 CDSi 198710 - 198757 1.74 198710 - 198757 48 3 - 9 CDSi 199125 - 199247 16.94 199125 - 199247 123 3 - 10 CDSi 199407 - 199493 11.13 199407 - 199493 87 3 - 11 CDSi 200122 - 200192 -1.04 200122 - 200190 69 3 - 12 CDSi 200580 - 200670 15.20 200581 - 200670 90 3 - 13 CDSf 201093 - 201251 13.41 201093 - 201251 159 3 - TSS 201732 -5.29 4 - PolA 202238 1.12 4 - 1 CDSl 203739 - 204762 127.27 203739 - 204761 1023 4 - 2 CDSi 205197 - 205308 10.65 205199 - 205306 108 4 - 3 CDSi 205423 - 205503 4.58 205424 - 205501 78 4 - 4 CDSi 234361 - 234400 0.04 234362 - 234400 39 4 - 5 CDSi 234619 - 235221 68.11 234619 - 235221 603 4 - 6 CDSi 235930 - 235963 -7.01 235930 - 235962 33 4 - 7 CDSi 236270 - 236396 8.51 236272 - 236394 123 4 - 8 CDSf 236754 - 236802 20.52 236755 - 236802 48 4 - TSS 236915 -6.89 5 + TSS 243487 -7.89 5 + 1 CDSf 244194 - 244248 15.71 244194 - 244247 54 5 + 2 CDSi 244384 - 244507 12.59 244386 - 244505 120 5 + 3 CDSl 246375 - 246495 1.13 246376 - 246495 120 5 + PolA 246656 1.12 6 - PolA 249379 1.12 6 - 1 CDSl 249419 - 250022 93.69 249419 - 250021 603 6 - 2 CDSi 250612 - 250768 20.36 250614 - 250766 153 6 - 3 CDSi 250956 - 251018 9.51 250957 - 251016 60 6 - 4 CDSi 261087 - 261219 12.90 261088 - 261219 132 6 - 5 CDSi 262731 - 262894 9.42 262731 - 262892 162 6 - 6 CDSi 271421 - 271712 4.31 271422 - 271712 291 6 - 7 CDSi 272040 - 272310 13.10 272040 - 272309 270 6 - 8 CDSi 272876 - 273215 28.89 272878 - 273213 336 6 - 9 CDSi 274885 - 274994 4.57 274886 - 274993 108 6 - 10 CDSi 275452 - 275516 -0.53 275454 - 275516 63 6 - 11 CDSi 275813 - 275938 9.90 275813 - 275938 126 6 - 12 CDSi 277279 - 277429 15.95 277279 - 277428 150 6 - 13 CDSi 281557 - 281700 15.21 281559 - 281699 141 6 - 14 CDSi 283942 - 284012 13.18 283944 - 284012 69 6 - 15 CDSi 287092 - 287247 11.69 287092 - 287247 156 6 - 16 CDSi 287514 - 287667 9.01 287514 - 287666 153 6 - 17 CDSi 288769 - 288878 9.31 288771 - 288878 108 6 - 18 CDSi 289864 - 289974 10.76 289864 - 289974 111 6 - 19 CDSi 290535 - 290684 14.62 290535 - 290684 150 6 - 20 CDSi 296678 - 296700 3.42 296678 - 296698 21 6 - 21 CDSi 309864 - 309987 9.90 309865 - 309987 123 6 - 22 CDSi 310804 - 310928 14.91 310804 - 310926 123 6 - 23 CDSi 340830 - 340991 17.87 340831 - 340989 159 6 - 24 CDSi 367655 - 367718 7.80 367656 - 367718 63 6 - 25 CDSi 370559 - 370675 10.94 370559 - 370675 117 6 - 26 CDSf 372345 - 372401 7.24 372345 - 372401 57 6 - TSS 372529 -8.59 Predicted protein(s): >FGENESH: 1 15 exon (s) 3130 - 139570 730 aa, chain + MAPPVFLSTLRAIGGVCSSSNRVQVLLPPDLCLRHSGSRFHPFFPLMEIKGDFRYCKSYV QDGRDNTQKINLLQFSLLYQNTSSSARILALIVLVSSARQTRNYPPNQAQVGGPGSPSGT LDLDLLWHLPGELRTWKFPNGEEDKRASALPSSPSPNLKPEIPKLSLRDLKVYHPKDSIP TPYFQETASEWPALASSIPGPGSYENRQHLSVCRPRSYPPPPSWQPVPNSHLVTVKGEQR RAAAGVGPAPPPQEGTSAQLPMTEARGRNQGIPPPAVLESSFGDNPQLRRHLFTQMVMSG LCQNWHRQGSLVRETPEEMSFLSIWHFQLAPTAPYGPLSNLPRDIPNIFVQVPVPSSKLF IIIISDVKSMMPWTKWALSDYPMQGQALNAGPQVLQLPILRCYSVSEPGEGLPSKLWQGG LSIKCGPRCQSSPAAKETPYAFGKKLWAIAPKGPGLAGVPHSMPRCVQGGRAETKEVGLP DFQRFFIPNLELKSSGINRKQNRHPHSQHKERQRGHQHQHPAPRSLPCLGPPSLEGEKHG PGLPSSGHEANCTRHLHTHPGQPGARGLSPRPECIRIFRLSGAIPTAPFIFLSRGLVNME PASGEVGMCWGRHSRKLEAGGKRKEKQLQELAELVRSQAPANSAPIKRAGSREPSDQGLE TQRPFLITGLEESGCQLVRVAPSPHLLSQRCSESPGTSKVTHAREGSQWESSSECGKGAE RRMYNPGPGV >FGENESH: 2 10 exon (s) 162093 - 186575 619 aa, chain - MAAAPPLSKAEYLKRYLSGADAGVDRGSESGRKRRKKRPKPGGAGGKGMRIVDDDVSWTA ISTTKLEKEEEEDDGDLPVVAEFVDERPEEVKQMEAFRSSAKWKLLGGHNEDLPSNRHFR HDTPDSSPRRVRHGTPDPSPRKDRHDTPDPSPRRARHDTPDPSPLRGARHDSDTSPPRRI RHDSSDTSPPRRARHDSPDPSPPRRPQHNSSGASPRRVRHDSPDPSPPRRARHGSSDISS PRRVHNNSPDTSRRTLGSSDTQQLRRARHDSPDLAPNVTYSLPRTKSGKAPERASSKTSP HWKESGASHLSFPKNSKYEYDPDISPPRKKQAKSHFGDKKQLDSKGDCQKATDSDLSSPR HKQSPGHQDSDSDLSPPRNRPRHRSSDSDLSPPRRRQRTKSSDSDLSPPRRSQPPGKKAA HMYSGAKTGLVLTDIQREQQELKEQDQETMAFEAEFQYAETVFRDKSGRKRNLKLERLEQ RRKAEKDSERDELYAQWGKGLAQSRQQQQNVEDAMKEMQKPLARYIDDEDLDRMLREQER EGDPMANFIKKNKAKENKNKKVRPRYSGPAPPPNRFNIWPGYRWDGVDRSNGFEQKRFAR LASKKAVEELAYKWSVEDM >FGENESH: 3 13 exon (s) 192536 - 201251 394 aa, chain - MTRLLLTKIPFFREIIVSSFSCEHCGWNNTEIQSAGRIQDQGVRYTLSVRALEDMNREVV KTDSAATRIPELDFEIPAFSQKGALTTVEGLITRAISGLEQDQPARRANKDATAERIDEF IVKLKELKQVASPFTLIIDDPSGNSFVENPHAPQKDDALVITHYNRTRQQEEMLGLQEEA PAEKPEEEDLRNEVLQFSTNCPECNAPAQTNMKLEVIIMATNCENCGHRTNEVKSGGAVE PLGTRITLHITDASDMTRDLLKSETCSVEIPELEFELGMAVLGGKFTTLEGLLKDIRELV TKNPFTLGDSSNPGQTERLQEFSQKMDQIIEGNMKAHFIMDDPAGNSYLQNVYAPEDDPE MKVERYKRTFDQNEELGLNDMKTEGYEAGLAPQR >FGENESH: 4 8 exon (s) 203739 - 236802 689 aa, chain - MFLKAVVLTLALVAVAGARAEVSADQVATVMWDYFSQLSNNAKEAVEHLQKSELTQQLKK TGPSGIKGREAEQLRRQLTPYAQRMERVLRENADSLQASLRPHADELKAKIDQNVEELKG RLTPYADEFKVKIDQTVEELRRSLAPYAQDTQEKLNHQLEGLTFQMKKNAEELKARISAS AEELRQRLAPLAEDVRGNLRGNTEGLQKSLAELGGHLDQQVEEFRRRVEPYGENFNKALV QQMEQLRQKLGPHAGDVEGHLSFLEKDLRDKKFWYELEDTCPVGGLPPPVFSEQVMASMA AVLTWALALLSAFSATQARKGFWDYFSQTSGDKGRVEQIHQQKMAREPAGSVRDDLGTKE MMEASSLTAWISVPFSRTLKDSLEQDLNNMNKFLEKLRPLSGSEAPRLPQDPVGMRRQLQ EELEEVKARLQPYMAEAHELVGWNLEGLRQQLKPYTMDLMEQVALRVQELQEQLRVVGED TKAQLLGGVDEAWALLQGLQSRVVHHTGRFKELFHPYAESLVSGIGRHVQELHRSVAPHA PASPARLSRCVQVLSRKLTLKAKALHARIQQNLDQLREELSRAFAGTGTEEGAGPDPQML SEEVRQRLQAFRQDTYLQIAAFTRAIDQETEEVQQQLAPPPPGHSAFAPEFQQTDSGKVL SKLQARLDDLWEDITHSLHDQGHSHLGDP >FGENESH: 5 3 exon (s) 244194 - 246495 99 aa, chain + MQPRVLLVVALLALLASARASEAEDASLLSFMQGYMKHATKTAKDALSSVQESQVAQQAR GWVTDGFSSLKDYWSTVKDKFSEFWDLDPEVRPTSAVAA >FGENESH: 6 26 exon (s) 249419 - 372401 1347 aa, chain - MQVVKGYIIQDFLQETKQLVAIKIIDKTQLDEENLKKIFREVQIMKMLCHPHIIRLYQVM ETERMIYLVTEYASGGEIFDHLVAHGRMAEKEARRKFKQIVTAVYFCHCRNIVHRDLKAE NLLLDANLNIKIADFGFSNLFTPGQLLKTWCGSPPYAAPELFEGKEYDGPKVDIWSLGVV LYVLVCGALPFDGSTLQNLRARVLSGKFRIPFFMSTGLVPELDKRLKAGCLSIAECEHLI RHMLVLDPNKRLSMEQICKHKWMKLGDADPNFDRLIAECQQLKEERQVDPLNEDVLLAME DMGLDKEQTLQPDGTLNLDSDEGEEPSPEALVRYLSMRRHTVGVADPRTEVMEDLQKLLP GFPGVNPQAPFLQVAPNVNFMHNLLPMQNLQPTGQLEYKEQSLLQPPTLQLLNGMGPLGR RASDGGANIQLHAQQLLKRPRGPSPLVTMTPAVPAVTPVDEESSDGEPDQEAVQRYLANR SKRHTLAMTNPTAEIPPDLQRQLGQQPFRSRVWPPHLVPDQHRSTYKDSNTLHLPTERFS PVRRFSDGAASIQAFKAHLEKMGNNSSIKQLQQECEQLQKMYGGQIDERTLEKTQQQHML YQQEQHHQILQQQIQPSPPLQAACENQPALLTHQLQRLRIQPSSPPPNHPNNHLFRQPSN SPPPMSSAMIQPHGAASSSQFQGLPSRSAIFQQQPENCSSPPNVALTCLGMQQPAQSQQV TIQVQEPVDMLSNMPGTAAGSSGRGISISPSAGQMQMQHRTNLMATLSYGHRPLSKQLSA DSAEAHSLNVNRFSPANYDQAHLHPHLFSDQSRGSPSSYSPSTGVGFSPTQALKVPPLDQ FPTFPPSAHQQPPHYTTSALQQALLSPTPPDYTRHQQASSPTPPHGYAHQPALMHSESME EDCSCEGAKDGFQDSKSSSTLTKGCHDSPLLLSTGGPGDPESLLGTVSHAQELGIHPYGH QPTAAFSKNKVPSREPVIGNCMDRSSPGQAVELPDHNGLGYPARPSVHEHHRPRALQRHH TIQNSDDAYVQLDNLPGMSLVAGKALSSARMSDAVLSQSSLMGSQQFQDGENEGPPRPFR MKAAVLTLAVLFLTGSQARHFWQQDEPPQSPWDRVKDLATVYVDVLKDSGRDYVSQFEGS ALGKQLNLKLLDNWDSVTSTFSKLREQLGPVTQEFWDNLEKETEGLRQEMSKDLEEVKAK VQPYLDDFQKKWQEEMELYRQKVEPLRAELQEGARQKLHELQEKLSPLGEEMRDRARAHV DALRTHLAPYSDELRQRLAARLEALKENGGARLAEYHAKATEHLSTLSEKAKPALEDLRQ GLLPVLESFKVSFLSALEEYTKKLNTQ Click Back button to return to programs menu (Loaded file with sequence was automatically delinked)