BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. RID: 1111135235-27705-18833678651.BLASTQ2 Query= Apo.mask5_|GENSCAN_predicted_peptide_1|204_aa (204 letters) Database: Non-redundant SwissProt sequences 164,271 sequences; 60,490,055 total letters Score E Sequences producing significant alignments: (bits) Value gi|34098387|sp|O75151|PHF2_HUMAN PHD finger protein 2 (GRC5) 33 0.085 gi|13638438|sp|P54577|SYYC_HUMAN Tyrosyl-tRNA synthetase, cytopl... 31 0.32 gi|51338754|sp|P11137|MAP2_HUMAN Microtubule-associated protein ... 30 0.42 gi|37999825|sp|Q9Y4E5|ZN451_HUMAN Zinc finger protein 451 (Coact... 29 1.2 gi|3913566|sp|O00472|ELL2_HUMAN RNA polymerase II elongation fac... 28 2.1 gi|32172451|sp|Q12913|PTPRJ_HUMAN Receptor-type tyrosine-protein... 27 3.6 gi|3913527|sp|O60673|DPOZ_HUMAN DNA polymerase zeta catalytic su... 27 3.6 gi|544124|sp|P35663|CYLC1_HUMAN Cylicin-1 (Cylicin I) (Multiple-... 27 4.7 gi|46395788|sp|Q86SQ6|GP123_HUMAN Probable G-protein coupled rec... 27 4.7 gi|51702190|sp|Q9H0M4|ZPW1_HUMAN Zinc finger CW-type PWWP domain... 27 4.7 gi|27923738|sp|Q9H981|ARP8_HUMAN Actin-related protein 8 27 6.1 gi|20139067|sp|Q96NK8|NDF6_HUMAN Neurogenic differentiation fact... 26 7.9 gi|27735202|sp|P55010|IF5_HUMAN Eukaryotic translation initiatio... 26 7.9 gi|56749457|sp|Q15208|STK38_HUMAN Serine/threonine-protein kinas... 26 7.9 ALIGNMENTS >gi|34098387|sp|O75151|PHF2_HUMAN PHD finger protein 2 (GRC5) Length = 1101 Score = 32.7 bits (73), Expect = 0.085 Identities = 20/58 (34%), Positives = 26/58 (44%), Gaps = 2/58 (3%) Query: 10 PAEINTKITLQEYYS--NCQYSDISKQDPWGRGQGKNSEIKKLHGKKNGENKARDVIK 65 PA +T+ +Q S N Q SD Q WG GQ K S + +KNG + K Sbjct: 786 PASPSTQEAIQGMLSMANLQASDSCLQTTWGAGQAKGSSLAAHGARKNGGGSGKSAGK 843 >gi|13638438|sp|P54577|SYYC_HUMAN Tyrosyl-tRNA synthetase, cytoplasmic (Tyrosyl--tRNA ligase) (TyrRS) Length = 528 Score = 30.8 bits (68), Expect = 0.32 Identities = 27/101 (26%), Positives = 44/101 (43%), Gaps = 23/101 (22%) Query: 24 SNCQYSDISKQDPWGRGQGKNSEI-------------KKLHGKKNGENKARDVIKCNTKE 70 ++ Y D SKQ P +G KNSE K + +K+ + + V K + E Sbjct: 337 ASAAYPDPSKQKPMAKGPAKNSEPEEVIPSRLDIRVGKIITVEKHPDADSLYVEKIDVGE 396 Query: 71 SE----------LVKKEALKSKVVIILGNISGNNLRTHGSQ 101 +E V KE L+ ++V++L N+ +R SQ Sbjct: 397 AEPRTVVSGLVQFVPKEELQDRLVVVLCNLKPQKMRGVESQ 437 >gi|51338754|sp|P11137|MAP2_HUMAN Microtubule-associated protein 2 (MAP 2) (MAP-2) Length = 1827 Score = 30.4 bits (67), Expect = 0.42 Identities = 34/121 (28%), Positives = 50/121 (41%), Gaps = 7/121 (5%) Query: 33 KQDPWGRGQGKNSEIKKLHGKKNGENKARDVI---KCNTKESELVKK---EALKSKVVII 86 K+ P+ G+G+ S ++ KK +RD + K K++EL KK +A I Sbjct: 1427 KEKPFKTGRGRISTPERKVAKKEPSTVSRDEVRRKKAVYKKAELAKKTEVQAHSPSRKFI 1486 Query: 87 LGNISGNNLRTHGSQNKRGGSKDDCGVVGLGGFIFQRKKQKHRDKVNHSVSLREKIMEPD 146 L TH S KR + G L +F++ K K D V S R + P Sbjct: 1487 LKPAIKYTRPTHLSCVKRKTTAAG-GESALAPSVFKQAKDKVSDGVTKSPEKRSSLPRPS 1545 Query: 147 S 147 S Sbjct: 1546 S 1546 >gi|37999825|sp|Q9Y4E5|ZN451_HUMAN Zinc finger protein 451 (Coactivator for steroid receptors) Length = 1061 Score = 28.9 bits (63), Expect = 1.2 Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 10/63 (15%) Query: 16 KITLQEYYSNCQYSDISKQDPWGRGQ----------GKNSEIKKLHGKKNGENKARDVIK 65 K+ +E YS C + K W R N+ I ++H +K+ E + + VIK Sbjct: 731 KVNRKEDYSRCLQIMLDKGKLWFRCSLCSATAQNLTDMNTHIHQVHKEKSDEEEQQYVIK 790 Query: 66 CNT 68 C T Sbjct: 791 CGT 793 >gi|3913566|sp|O00472|ELL2_HUMAN RNA polymerase II elongation factor ELL2 Length = 640 Score = 28.1 bits (61), Expect = 2.1 Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 8/59 (13%) Query: 53 KKNGENKARDVIKCNTKESELVKKEALKSKVVIILGNISGNNLRTHGSQNKRGGSKDDC 111 KK+ ++K +D IK + E+ K+E LK + I N + S N GG K+DC Sbjct: 464 KKSKKHKEKDQIKKHDIETIEEKEEDLKREEEIAKLN--------NSSPNSSGGVKEDC 514 >gi|32172451|sp|Q12913|PTPRJ_HUMAN Receptor-type tyrosine-protein phosphatase eta precursor (Protein-tyrosine phosphatase eta) (R-PTP-eta) (HPTP eta) (Protein-tyrosine phosphatase receptor type J) (Density enhanced phosphatase-1) (DEP-1) (CD148 antigen) Length = 1337 Score = 27.3 bits (59), Expect = 3.6 Identities = 14/28 (50%), Positives = 19/28 (67%), Gaps = 2/28 (7%) Query: 113 VVGLGGFIFQRKKQKHRDKVNHSVSLRE 140 +V +GGFIF RKK+K D N+ VS + Sbjct: 987 IVTVGGFIFWRKKRK--DAKNNEVSFSQ 1012 >gi|3913527|sp|O60673|DPOZ_HUMAN DNA polymerase zeta catalytic subunit (hREV3) Length = 3130 Score = 27.3 bits (59), Expect = 3.6 Identities = 25/95 (26%), Positives = 42/95 (44%), Gaps = 14/95 (14%) Query: 10 PAEINTKITLQEYYSNCQYSDISKQDPWGRGQGKNSEIKKLHGKKNGENKARDVIKCNTK 69 P ++ I+ + S C+ ++S +G GQ + +K+L K+ + KA++ NT Sbjct: 1493 PRSLSEAISQTKALSQCKNRNVSTPSAFGEGQSGLAVLKELLQKR--QQKAQN---ANTT 1547 Query: 70 ESELVKKEALKSKVVIILGNISGNNLRTHGSQNKR 104 + L K NISG+ H NKR Sbjct: 1548 QDPLSNKHQPNK-------NISGS--LEHNKANKR 1573 >gi|544124|sp|P35663|CYLC1_HUMAN Cylicin-1 (Cylicin I) (Multiple-band polypeptide I) Length = 598 Score = 26.9 bits (58), Expect = 4.7 Identities = 35/187 (18%), Positives = 69/187 (36%), Gaps = 26/187 (13%) Query: 2 STTSTSFNPAEINTKITLQEYYSNCQYSDISKQDPWGRGQGKNSEIKKLHGKKNGENKAR 61 S +S+ NP N+K + NC S++D K + + LH K N + + Sbjct: 122 SKSSSETNPESQNSKTVSK----NC-----SQKDKKDSKNSKKTNTEFLHTKNNPKKDLK 172 Query: 62 DVIKCNTKESELVKKEALKSKVVIILG--------------NISGNNLRTHGSQNKRGGS 107 N SE+ + +L ++++G N S NN + + + + Sbjct: 173 RSKTSNDPISEICSENSLNVDFLMLVGQSDDESINFDAWLRNYSQNNSKNYSLKYTKYTK 232 Query: 108 KDDCGVVGLGGFIFQRKKQKHRDKVNHSVSLREKIMEPDSNPGLSGLDEGTEEKVGLQAL 167 KD + + +D S +++ + + D + E T+ + G Sbjct: 233 KDTKKNAKKSS---DAESEDSKDAKKDSKKVKKNVKKDDKKKDVKKDTESTDAESGDSKD 289 Query: 168 EREHRKR 174 ER+ K+ Sbjct: 290 ERKDTKK 296 >gi|46395788|sp|Q86SQ6|GP123_HUMAN Probable G-protein coupled receptor 123 Length = 1280 Score = 26.9 bits (58), Expect = 4.7 Identities = 12/36 (33%), Positives = 18/36 (50%) Query: 152 SGLDEGTEEKVGLQALEREHRKRAVLLIHSWRSAWH 187 SGL G +E + R+ +L+ SWRS+ H Sbjct: 281 SGLTRAALVSPGPSGVEEDTRREGCVLVGSWRSSTH 316 >gi|51702190|sp|Q9H0M4|ZPW1_HUMAN Zinc finger CW-type PWWP domain protein 1 Length = 494 Score = 26.9 bits (58), Expect = 4.7 Identities = 14/49 (28%), Positives = 24/49 (48%) Query: 37 WGRGQGKNSEIKKLHGKKNGENKARDVIKCNTKESELVKKEALKSKVVI 85 W R G NS ++ + +G N ++ KE EL K+E K+ ++ Sbjct: 426 WSRFNGSNSNGERKDLQLSGLNSPGSCLEKKEKEEELEKEEGEKTDPIL 474 >gi|27923738|sp|Q9H981|ARP8_HUMAN Actin-related protein 8 Length = 624 Score = 26.6 bits (57), Expect = 6.1 Identities = 30/127 (23%), Positives = 51/127 (40%), Gaps = 16/127 (12%) Query: 39 RGQGKNSEIKKLHGKKNGENKARDVIKCNTKESELVKKEALKSKVVIILGNISGNNLRTH 98 +G +N + K +K R ++ ES +E ++S +I++ Sbjct: 6 KGDTENGKEKGGEKEKEQRGVKRPIVPALVPES---LQEQIQSNFIIVIHP--------- 53 Query: 99 GSQNKRGGSKDDCGVVGLGGFIFQRKKQKHRDKVNHSVSLREKIMEPDSNP----GLSGL 154 GS R G D + I +R KQ+ + S LRE + +P+SN GL + Sbjct: 54 GSTTLRIGRATDTLPASIPHVIARRHKQQGQPLYKDSWLLREGLNKPESNEQRQNGLKMV 113 Query: 155 DEGTEEK 161 D+ K Sbjct: 114 DQAIWSK 120 >gi|20139067|sp|Q96NK8|NDF6_HUMAN Neurogenic differentiation factor 6 (NeuroD6) (My051 protein) Length = 337 Score = 26.2 bits (56), Expect = 7.9 Identities = 12/42 (28%), Positives = 21/42 (50%) Query: 39 RGQGKNSEIKKLHGKKNGENKARDVIKCNTKESELVKKEALK 80 R + E ++HG + + R V+ C +K +L K E L+ Sbjct: 96 RQEANARERNRMHGLNDALDNLRKVVPCYSKTQKLSKIETLR 137 >gi|27735202|sp|P55010|IF5_HUMAN Eukaryotic translation initiation factor 5 (eIF-5) Length = 431 Score = 26.2 bits (56), Expect = 7.9 Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 4/57 (7%) Query: 122 QRKKQKHRDKVNHSVSLREKIMEP----DSNPGLSGLDEGTEEKVGLQALEREHRKR 174 ++K +K +DK N SVS E P + NP ++E ++ G E R+R Sbjct: 159 EKKNRKGKDKENGSVSSSETPPPPPPPNEINPPPHTMEEEEDDDWGEDTTEEAQRRR 215 >gi|56749457|sp|Q15208|STK38_HUMAN Serine/threonine-protein kinase 38 (NDR1 protein kinase) (Nuclear Dbf2-related kinase 1) Length = 465 Score = 26.2 bits (56), Expect = 7.9 Identities = 33/136 (24%), Positives = 60/136 (44%), Gaps = 15/136 (11%) Query: 15 TKITLQEYYSNCQYSDISKQDPWGRGQGKNSEIKKLHGKKNGENKARDVIKCNTKESELV 74 TK+TL+ +YSN I++ + Q K ++ + G K+ E + R KE+E + Sbjct: 23 TKVTLENFYSNL----IAQHEEREMRQKKLEKVMEEEGLKDEEKRLRRSAHAR-KETEFL 77 Query: 75 KKEALKSKVVIILGNISGNNLRTHGS---QNKRGGSKDDCGVVGLGGFIFQRKKQKHRDK 131 + + + LG +L+ G R K D G V I ++ +++ Sbjct: 78 RLKRTR------LGLEDFESLKVIGRGAFGEVRLVQKKDTGHV-YAMKILRKADMLEKEQ 130 Query: 132 VNHSVSLREKIMEPDS 147 V H + R+ ++E DS Sbjct: 131 VGHIRAERDILVEADS 146 Database: Non-redundant SwissProt sequences Posted date: Mar 15, 2005 10:11 AM Number of letters in database: 60,490,055 Number of sequences in database: 164,271 Lambda K H 0.311 0.130 0.375 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 486,417 Number of Sequences: 164271 Number of extensions: 21783 Number of successful extensions: 52 Number of sequences better than 10.0: 2 Number of HSP's better than 10.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 52 Number of HSP's gapped (non-prelim): 2 length of query: 204 length of database: 6,424,444 effective HSP length: 91 effective length of query: 113 effective length of database: 5,341,089 effective search space: 603543057 effective search space used: 603543057 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.8 bits) S2: 56 (26.2 bits)