BLASTP 2.2.10 [Oct-19-2004]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

RID: 1111135235-27705-18833678651.BLASTQ2

Query= Apo.mask5_|GENSCAN_predicted_peptide_1|204_aa
         (204 letters)


Database: Non-redundant SwissProt sequences 
           164,271 sequences; 60,490,055 total letters

 
If you have any problems or questions with the results of this search 
please refer to the BLAST FAQs

Taxonomy reports

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|34098387|sp|O75151|PHF2_HUMAN  PHD finger protein 2 (GRC5)      33   0.085 
gi|13638438|sp|P54577|SYYC_HUMAN  Tyrosyl-tRNA synthetase, c...    31   0.32  
gi|51338754|sp|P11137|MAP2_HUMAN  Microtubule-associated pro...    30   0.42  
gi|37999825|sp|Q9Y4E5|ZN451_HUMAN  Zinc finger protein 451 (...    29   1.2   
gi|3913566|sp|O00472|ELL2_HUMAN  RNA polymerase II elongatio...    28   2.1   
gi|32172451|sp|Q12913|PTPRJ_HUMAN  Receptor-type tyrosine-pr...    27   3.6   
gi|3913527|sp|O60673|DPOZ_HUMAN  DNA polymerase zeta catalyt...    27   3.6   
gi|544124|sp|P35663|CYLC1_HUMAN  Cylicin-1 (Cylicin I) (Mult...    27   4.7   
gi|46395788|sp|Q86SQ6|GP123_HUMAN  Probable G-protein couple...    27   4.7   
gi|51702190|sp|Q9H0M4|ZPW1_HUMAN  Zinc finger CW-type PWWP d...    27   4.7   
gi|27923738|sp|Q9H981|ARP8_HUMAN  Actin-related protein 8          27   6.1   
gi|20139067|sp|Q96NK8|NDF6_HUMAN  Neurogenic differentiation...    26   7.9   
gi|27735202|sp|P55010|IF5_HUMAN  Eukaryotic translation init...    26   7.9   
gi|56749457|sp|Q15208|STK38_HUMAN  Serine/threonine-protein ...    26   7.9   


Alignments

>gi|34098387|sp|O75151|PHF2_HUMAN   PHD finger protein 2 (GRC5)
          Length = 1101

 Score = 32.7 bits (73), Expect = 0.085
 Identities = 20/58 (34%), Positives = 26/58 (44%), Gaps = 2/58 (3%)

Query: 10  PAEINTKITLQEYYS--NCQYSDISKQDPWGRGQGKNSEIKKLHGKKNGENKARDVIK 65
           PA  +T+  +Q   S  N Q SD   Q  WG GQ K S +     +KNG    +   K
Sbjct: 786 PASPSTQEAIQGMLSMANLQASDSCLQTTWGAGQAKGSSLAAHGARKNGGGSGKSAGK 843



>gi|13638438|sp|P54577|SYYC_HUMAN   Tyrosyl-tRNA synthetase, cytoplasmic (Tyrosyl--tRNA ligase) (TyrRS)
          Length = 528

 Score = 30.8 bits (68), Expect = 0.32
 Identities = 27/101 (26%), Positives = 44/101 (43%), Gaps = 23/101 (22%)

Query: 24  SNCQYSDISKQDPWGRGQGKNSEI-------------KKLHGKKNGENKARDVIKCNTKE 70
           ++  Y D SKQ P  +G  KNSE              K +  +K+ +  +  V K +  E
Sbjct: 337 ASAAYPDPSKQKPMAKGPAKNSEPEEVIPSRLDIRVGKIITVEKHPDADSLYVEKIDVGE 396

Query: 71  SE----------LVKKEALKSKVVIILGNISGNNLRTHGSQ 101
           +E           V KE L+ ++V++L N+    +R   SQ
Sbjct: 397 AEPRTVVSGLVQFVPKEELQDRLVVVLCNLKPQKMRGVESQ 437



>gi|51338754|sp|P11137|MAP2_HUMAN   Microtubule-associated protein 2 (MAP 2) (MAP-2)
          Length = 1827

 Score = 30.4 bits (67), Expect = 0.42
 Identities = 34/121 (28%), Positives = 50/121 (41%), Gaps = 7/121 (5%)

Query: 33   KQDPWGRGQGKNSEIKKLHGKKNGENKARDVI---KCNTKESELVKK---EALKSKVVII 86
            K+ P+  G+G+ S  ++   KK     +RD +   K   K++EL KK   +A       I
Sbjct: 1427 KEKPFKTGRGRISTPERKVAKKEPSTVSRDEVRRKKAVYKKAELAKKTEVQAHSPSRKFI 1486

Query: 87   LGNISGNNLRTHGSQNKRGGSKDDCGVVGLGGFIFQRKKQKHRDKVNHSVSLREKIMEPD 146
            L         TH S  KR  +    G   L   +F++ K K  D V  S   R  +  P 
Sbjct: 1487 LKPAIKYTRPTHLSCVKRKTTAAG-GESALAPSVFKQAKDKVSDGVTKSPEKRSSLPRPS 1545

Query: 147  S 147
            S
Sbjct: 1546 S 1546



>gi|37999825|sp|Q9Y4E5|ZN451_HUMAN   Zinc finger protein 451 (Coactivator for steroid receptors)
          Length = 1061

 Score = 28.9 bits (63), Expect = 1.2
 Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 10/63 (15%)

Query: 16  KITLQEYYSNCQYSDISKQDPWGRGQ----------GKNSEIKKLHGKKNGENKARDVIK 65
           K+  +E YS C    + K   W R              N+ I ++H +K+ E + + VIK
Sbjct: 731 KVNRKEDYSRCLQIMLDKGKLWFRCSLCSATAQNLTDMNTHIHQVHKEKSDEEEQQYVIK 790

Query: 66  CNT 68
           C T
Sbjct: 791 CGT 793



>gi|3913566|sp|O00472|ELL2_HUMAN   RNA polymerase II elongation factor ELL2
          Length = 640

 Score = 28.1 bits (61), Expect = 2.1
 Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 8/59 (13%)

Query: 53  KKNGENKARDVIKCNTKESELVKKEALKSKVVIILGNISGNNLRTHGSQNKRGGSKDDC 111
           KK+ ++K +D IK +  E+   K+E LK +  I   N        + S N  GG K+DC
Sbjct: 464 KKSKKHKEKDQIKKHDIETIEEKEEDLKREEEIAKLN--------NSSPNSSGGVKEDC 514



>gi|32172451|sp|Q12913|PTPRJ_HUMAN   Receptor-type tyrosine-protein phosphatase eta precursor
            (Protein-tyrosine phosphatase eta) (R-PTP-eta) (HPTP eta)
            (Protein-tyrosine phosphatase receptor type J) (Density
            enhanced phosphatase-1) (DEP-1) (CD148 antigen)
          Length = 1337

 Score = 27.3 bits (59), Expect = 3.6
 Identities = 14/28 (50%), Positives = 19/28 (67%), Gaps = 2/28 (7%)

Query: 113  VVGLGGFIFQRKKQKHRDKVNHSVSLRE 140
            +V +GGFIF RKK+K  D  N+ VS  +
Sbjct: 987  IVTVGGFIFWRKKRK--DAKNNEVSFSQ 1012



>gi|3913527|sp|O60673|DPOZ_HUMAN   DNA polymerase zeta catalytic subunit (hREV3)
          Length = 3130

 Score = 27.3 bits (59), Expect = 3.6
 Identities = 25/95 (26%), Positives = 42/95 (44%), Gaps = 14/95 (14%)

Query: 10   PAEINTKITLQEYYSNCQYSDISKQDPWGRGQGKNSEIKKLHGKKNGENKARDVIKCNTK 69
            P  ++  I+  +  S C+  ++S    +G GQ   + +K+L  K+  + KA++    NT 
Sbjct: 1493 PRSLSEAISQTKALSQCKNRNVSTPSAFGEGQSGLAVLKELLQKR--QQKAQN---ANTT 1547

Query: 70   ESELVKKEALKSKVVIILGNISGNNLRTHGSQNKR 104
            +  L  K            NISG+    H   NKR
Sbjct: 1548 QDPLSNKHQPNK-------NISGS--LEHNKANKR 1573



>gi|544124|sp|P35663|CYLC1_HUMAN   Cylicin-1 (Cylicin I) (Multiple-band polypeptide I)
          Length = 598

 Score = 26.9 bits (58), Expect = 4.7
 Identities = 35/187 (18%), Positives = 69/187 (36%), Gaps = 26/187 (13%)

Query: 2   STTSTSFNPAEINTKITLQEYYSNCQYSDISKQDPWGRGQGKNSEIKKLHGKKNGENKAR 61
           S +S+  NP   N+K   +    NC     S++D       K +  + LH K N +   +
Sbjct: 122 SKSSSETNPESQNSKTVSK----NC-----SQKDKKDSKNSKKTNTEFLHTKNNPKKDLK 172

Query: 62  DVIKCNTKESELVKKEALKSKVVIILG--------------NISGNNLRTHGSQNKRGGS 107
                N   SE+  + +L    ++++G              N S NN + +  +  +   
Sbjct: 173 RSKTSNDPISEICSENSLNVDFLMLVGQSDDESINFDAWLRNYSQNNSKNYSLKYTKYTK 232

Query: 108 KDDCGVVGLGGFIFQRKKQKHRDKVNHSVSLREKIMEPDSNPGLSGLDEGTEEKVGLQAL 167
           KD              + +  +D    S  +++ + + D    +    E T+ + G    
Sbjct: 233 KDTKKNAKKSS---DAESEDSKDAKKDSKKVKKNVKKDDKKKDVKKDTESTDAESGDSKD 289

Query: 168 EREHRKR 174
           ER+  K+
Sbjct: 290 ERKDTKK 296



>gi|46395788|sp|Q86SQ6|GP123_HUMAN   Probable G-protein coupled receptor 123
          Length = 1280

 Score = 26.9 bits (58), Expect = 4.7
 Identities = 12/36 (33%), Positives = 18/36 (50%)

Query: 152 SGLDEGTEEKVGLQALEREHRKRAVLLIHSWRSAWH 187
           SGL        G   +E + R+   +L+ SWRS+ H
Sbjct: 281 SGLTRAALVSPGPSGVEEDTRREGCVLVGSWRSSTH 316



>gi|51702190|sp|Q9H0M4|ZPW1_HUMAN   Zinc finger CW-type PWWP domain protein 1
          Length = 494

 Score = 26.9 bits (58), Expect = 4.7
 Identities = 14/49 (28%), Positives = 24/49 (48%)

Query: 37  WGRGQGKNSEIKKLHGKKNGENKARDVIKCNTKESELVKKEALKSKVVI 85
           W R  G NS  ++   + +G N     ++   KE EL K+E  K+  ++
Sbjct: 426 WSRFNGSNSNGERKDLQLSGLNSPGSCLEKKEKEEELEKEEGEKTDPIL 474



>gi|27923738|sp|Q9H981|ARP8_HUMAN   Actin-related protein 8
          Length = 624

 Score = 26.6 bits (57), Expect = 6.1
 Identities = 30/127 (23%), Positives = 51/127 (40%), Gaps = 16/127 (12%)

Query: 39  RGQGKNSEIKKLHGKKNGENKARDVIKCNTKESELVKKEALKSKVVIILGNISGNNLRTH 98
           +G  +N + K    +K      R ++     ES    +E ++S  +I++           
Sbjct: 6   KGDTENGKEKGGEKEKEQRGVKRPIVPALVPES---LQEQIQSNFIIVIHP--------- 53

Query: 99  GSQNKRGGSKDDCGVVGLGGFIFQRKKQKHRDKVNHSVSLREKIMEPDSNP----GLSGL 154
           GS   R G   D     +   I +R KQ+ +     S  LRE + +P+SN     GL  +
Sbjct: 54  GSTTLRIGRATDTLPASIPHVIARRHKQQGQPLYKDSWLLREGLNKPESNEQRQNGLKMV 113

Query: 155 DEGTEEK 161
           D+    K
Sbjct: 114 DQAIWSK 120



>gi|20139067|sp|Q96NK8|NDF6_HUMAN   Neurogenic differentiation factor 6 (NeuroD6) (My051 protein)
          Length = 337

 Score = 26.2 bits (56), Expect = 7.9
 Identities = 12/42 (28%), Positives = 21/42 (50%)

Query: 39  RGQGKNSEIKKLHGKKNGENKARDVIKCNTKESELVKKEALK 80
           R +    E  ++HG  +  +  R V+ C +K  +L K E L+
Sbjct: 96  RQEANARERNRMHGLNDALDNLRKVVPCYSKTQKLSKIETLR 137



>gi|27735202|sp|P55010|IF5_HUMAN   Eukaryotic translation initiation factor 5 (eIF-5)
          Length = 431

 Score = 26.2 bits (56), Expect = 7.9
 Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 4/57 (7%)

Query: 122 QRKKQKHRDKVNHSVSLREKIMEP----DSNPGLSGLDEGTEEKVGLQALEREHRKR 174
           ++K +K +DK N SVS  E    P    + NP    ++E  ++  G    E   R+R
Sbjct: 159 EKKNRKGKDKENGSVSSSETPPPPPPPNEINPPPHTMEEEEDDDWGEDTTEEAQRRR 215



>gi|56749457|sp|Q15208|STK38_HUMAN   Serine/threonine-protein kinase 38 (NDR1 protein kinase) (Nuclear
           Dbf2-related kinase 1)
          Length = 465

 Score = 26.2 bits (56), Expect = 7.9
 Identities = 33/136 (24%), Positives = 60/136 (44%), Gaps = 15/136 (11%)

Query: 15  TKITLQEYYSNCQYSDISKQDPWGRGQGKNSEIKKLHGKKNGENKARDVIKCNTKESELV 74
           TK+TL+ +YSN     I++ +     Q K  ++ +  G K+ E + R       KE+E +
Sbjct: 23  TKVTLENFYSNL----IAQHEEREMRQKKLEKVMEEEGLKDEEKRLRRSAHAR-KETEFL 77

Query: 75  KKEALKSKVVIILGNISGNNLRTHGS---QNKRGGSKDDCGVVGLGGFIFQRKKQKHRDK 131
           + +  +      LG     +L+  G       R   K D G V     I ++     +++
Sbjct: 78  RLKRTR------LGLEDFESLKVIGRGAFGEVRLVQKKDTGHV-YAMKILRKADMLEKEQ 130

Query: 132 VNHSVSLREKIMEPDS 147
           V H  + R+ ++E DS
Sbjct: 131 VGHIRAERDILVEADS 146






  Database: Non-redundant SwissProt sequences
    Posted date:  Mar 15, 2005 10:11 AM
  Number of letters in database: 60,490,055
  Number of sequences in database:  164,271
  
Lambda     K      H
   0.311    0.130    0.375 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 486,417
Number of Sequences: 164271
Number of extensions: 21783
Number of successful extensions: 52
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 52
Number of HSP's gapped (non-prelim): 2
length of query: 204
length of database: 6,424,444
effective HSP length: 91
effective length of query: 113
effective length of database: 5,341,089
effective search space: 603543057
effective search space used: 603543057
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 56 (26.2 bits)







 


 
Format
  


 


 
Show
  Graphical OverviewLinkoutSequence RetrievalNCBI-giAlignmentPSSMBioseq in HTMLPlain textASN.1XMLformat


 


 
Use new formatter
  Masking CharacterDefault(X for protein, n for nucleotide)Lower Case
Masking ColorBlackGreyRed



 


 
Number of:
  Descriptions01050100250500
Alignments01050100250500



 


 
Alignment view
  PairwisePairwise with identitiesquery-anchored with identitiesquery-anchored without identitiesflat query-anchored with identitiesflat query-anchored without identitiesHit Table


 


 
Format for PSI-BLAST
  with inclusion threshold:


 


 
Limit results by entrez query
   or select from:All organismsViruses [ORGN]Archaea [ORGN]Bacteria [ORGN]Eukaryota [ORGN]Viridiplantae [ORGN]Fungi [ORGN]Metazoa [ORGN]Arthropoda [ORGN]Vertebrata [ORGN]Mammalia [ORGN]Rodentia [ORGN]Primates [ORGN]-------------------Aeropyrum pernix [ORGN]Aquifex aeolicus [ORGN]Arabidopsis thaliana [ORGN]Bacillus subtilis [ORGN]Bos taurus [ORGN]Caenorhabditis elegans [ORGN]Canis familiaris[ORGN]Danio rerio [ORGN]Dictyostelium discoideum [ORGN]Drosophila melanogaster [ORGN]Escherichia coli [ORGN]Gallus gallus [ORGN]Homo sapiens [ORGN]Human immunodeficiency virus type 1 [ORGN]Methanococcus jannaschii [ORGN]Mus musculus [ORGN]Oryctolagus cuniculus [ORGN]Oryza sativa [ORGN]Ovis aries [ORGN]Plasmodium falciparum [ORGN]Rattus norvegicus [ORGN]Saccharomyces cerevisiae [ORGN]Schizosaccharomyces pombe [ORGN]Xenopus tropicalis[ORGN]Simian immunodeficiency virus [ORGN]Sus scrofa[ORGN]Synechocystis PCC6803 [ORGN]Takifugu rubripes [ORGN]Xenopus laevis [ORGN]Zea mays [ORGN]


 


 
Expect value range:
    







 or