BLASTP 2.2.10 [Oct-19-2004]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
RID: 1111133333-30896-42602124959.BLASTQ2
Query= FGENESH:   5   3 exon (s) 244194  - 246495    99 aa, chain +
         (99 letters)

Database: Non-redundant SwissProt sequences 
           164,271 sequences; 60,490,055 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|114026|sp|P02656|APC3_HUMAN Apolipoprotein C-III precursor (A...   121   5e-29
gi|37999894|sp|Q9NW38|PHF9_HUMAN Ubiquitin ligase protein PHF9 (...    28   0.73 
gi|125536|sp|P15735|PHKG2_HUMAN Phosphorylase b kinase gamma cat...    25   4.8  

ALIGNMENTS
>gi|114026|sp|P02656|APC3_HUMAN Apolipoprotein C-III precursor (Apo-CIII) (ApoC-III)
          Length = 99

 Score =  121 bits (303), Expect = 5e-29
 Identities = 60/99 (60%), Positives = 60/99 (60%)

Query: 1  MQPXXXXXXXXXXXXXXXXXXXXXXXXXXXFMQGYMKHATKTAKDALXXXXXXXXXXXXR 60
          MQP                           FMQGYMKHATKTAKDAL            R
Sbjct: 1  MQPRVLLVVALLALLASARASEAEDASLLSFMQGYMKHATKTAKDALSSVQESQVAQQAR 60

Query: 61 GWVTDGFSSLKDYWSTVKDKFSEFWDLDPEVRPTSAVAA 99
          GWVTDGFSSLKDYWSTVKDKFSEFWDLDPEVRPTSAVAA
Sbjct: 61 GWVTDGFSSLKDYWSTVKDKFSEFWDLDPEVRPTSAVAA 99


>gi|37999894|sp|Q9NW38|PHF9_HUMAN Ubiquitin ligase protein PHF9 (Fanconi anemia group L protein)
           (FAAP 43)
          Length = 375

 Score = 27.7 bits (60), Expect = 0.73
 Identities = 12/30 (40%), Positives = 17/30 (56%)

Query: 69  SLKDYWSTVKDKFSEFWDLDPEVRPTSAVA 98
           SLK +W  + +   + W L+PE  P SA A
Sbjct: 196 SLKAFWDVMDEIDEKTWVLEPEKPPRSATA 225


>gi|125536|sp|P15735|PHKG2_HUMAN Phosphorylase b kinase gamma catalytic chain, testis/liver isoform
           (PHK-gamma-T) (Phosphorylase kinase gamma subunit 2)
           (PSK-C3)
          Length = 406

 Score = 25.0 bits (53), Expect = 4.8
 Identities = 13/27 (48%), Positives = 15/27 (55%)

Query: 72  DYWSTVKDKFSEFWDLDPEVRPTSAVA 98
           D  STVKD  S    +DPE R T+  A
Sbjct: 259 DRSSTVKDLISRLLQVDPEARLTAEQA 285


  Database: Non-redundant SwissProt sequences
    Posted date:  Mar 15, 2005 10:11 AM
  Number of letters in database: 60,490,055
  Number of sequences in database:  164,271
  
Lambda     K      H
   0.318    0.129    0.417 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 263,415
Number of Sequences: 164271
Number of extensions: 6280
Number of successful extensions: 11
Number of sequences better than 10.0: 0
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 11
Number of HSP's gapped (non-prelim): 0
length of query: 99
length of database: 6,424,444
effective HSP length: 70
effective length of query: 29
effective length of database: 5,591,094
effective search space: 162141726
effective search space used: 162141726
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)