BLASTP 2.2.10 [Oct-19-2004]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. RID: 1111133333-30896-42602124959.BLASTQ2 Query= FGENESH: 5 3 exon (s) 244194 - 246495 99 aa, chain + (99 letters) Database: Non-redundant SwissProt sequences 164,271 sequences; 60,490,055 total letters If you have any problems or questions with the results of this search please refer to the BLAST FAQs Taxonomy reports
RID: 1111133333-30896-42602124959.BLASTQ2
Query= FGENESH: 5 3 exon (s) 244194 - 246495 99 aa, chain + (99 letters)
Database: Non-redundant SwissProt sequences 164,271 sequences; 60,490,055 total letters
If you have any problems or questions with the results of this search please refer to the BLAST FAQs
Taxonomy reports
Score E Sequences producing significant alignments: (bits) Value gi|114026|sp|P02656|APC3_HUMAN Apolipoprotein C-III precurs... 121 5e-29 gi|37999894|sp|Q9NW38|PHF9_HUMAN Ubiquitin ligase protein P... 28 0.73 gi|125536|sp|P15735|PHKG2_HUMAN Phosphorylase b kinase gamm... 25 4.8 Alignments
Score E Sequences producing significant alignments: (bits) Value gi|114026|sp|P02656|APC3_HUMAN Apolipoprotein C-III precurs... 121 5e-29 gi|37999894|sp|Q9NW38|PHF9_HUMAN Ubiquitin ligase protein P... 28 0.73 gi|125536|sp|P15735|PHKG2_HUMAN Phosphorylase b kinase gamm... 25 4.8
>gi|114026|sp|P02656|APC3_HUMAN Apolipoprotein C-III precursor (Apo-CIII) (ApoC-III) Length = 99 Score = 121 bits (303), Expect = 5e-29 Identities = 60/99 (60%), Positives = 60/99 (60%) Query: 1 MQPXXXXXXXXXXXXXXXXXXXXXXXXXXXFMQGYMKHATKTAKDALXXXXXXXXXXXXR 60 MQP FMQGYMKHATKTAKDAL R Sbjct: 1 MQPRVLLVVALLALLASARASEAEDASLLSFMQGYMKHATKTAKDALSSVQESQVAQQAR 60 Query: 61 GWVTDGFSSLKDYWSTVKDKFSEFWDLDPEVRPTSAVAA 99 GWVTDGFSSLKDYWSTVKDKFSEFWDLDPEVRPTSAVAA Sbjct: 61 GWVTDGFSSLKDYWSTVKDKFSEFWDLDPEVRPTSAVAA 99
>gi|37999894|sp|Q9NW38|PHF9_HUMAN Ubiquitin ligase protein PHF9 (Fanconi anemia group L protein) (FAAP 43) Length = 375 Score = 27.7 bits (60), Expect = 0.73 Identities = 12/30 (40%), Positives = 17/30 (56%) Query: 69 SLKDYWSTVKDKFSEFWDLDPEVRPTSAVA 98 SLK +W + + + W L+PE P SA A Sbjct: 196 SLKAFWDVMDEIDEKTWVLEPEKPPRSATA 225
>gi|125536|sp|P15735|PHKG2_HUMAN Phosphorylase b kinase gamma catalytic chain, testis/liver isoform (PHK-gamma-T) (Phosphorylase kinase gamma subunit 2) (PSK-C3) Length = 406 Score = 25.0 bits (53), Expect = 4.8 Identities = 13/27 (48%), Positives = 15/27 (55%) Query: 72 DYWSTVKDKFSEFWDLDPEVRPTSAVA 98 D STVKD S +DPE R T+ A Sbjct: 259 DRSSTVKDLISRLLQVDPEARLTAEQA 285
Database: Non-redundant SwissProt sequences Posted date: Mar 15, 2005 10:11 AM Number of letters in database: 60,490,055 Number of sequences in database: 164,271 Lambda K H 0.318 0.129 0.417 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 263,415 Number of Sequences: 164271 Number of extensions: 6280 Number of successful extensions: 11 Number of sequences better than 10.0: 0 Number of HSP's better than 10.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 11 Number of HSP's gapped (non-prelim): 0 length of query: 99 length of database: 6,424,444 effective HSP length: 70 effective length of query: 29 effective length of database: 5,591,094 effective search space: 162141726 effective search space used: 162141726 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 51 (24.3 bits)
