BLASTP 2.2.10 [Oct-19-2004]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

RID: 1111089025-15265-61471905361.BLASTQ4

Query= Apo__5|geneid_v1.2_predicted_protein_5|402_AA
         (401 letters)


Database: Non-redundant SwissProt sequences 
           164,271 sequences; 60,490,055 total letters

 
If you have any problems or questions with the results of this search 
please refer to the BLAST FAQs

Taxonomy reports

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|6137318|sp|O75312|ZPR1_HUMAN  Zinc-finger protein ZPR1 (Z...   776   0.0   
gi|24636263|sp|Q9BY43|SHA2_HUMAN  SNF7 homolog associated wi...    32   0.38  
gi|14194461|sp|Q99996|AKAP9_HUMAN  A-kinase anchor protein 9...    29   3.2   
gi|20454926|sp|Q96RT8|GCP5_HUMAN  Gamma-tubulin complex comp...    28   4.2   
gi|48475012|sp|Q9UHD9|UBQ2_HUMAN  Ubiquilin 2 (Protein linki...    28   4.2   
gi|38372816|sp|Q8NH60|O52J3_HUMAN  Olfactory receptor 52J3         28   7.2   
gi|17369320|sp|Q9NRC6|SPCR_HUMAN  Spectrin beta chain, brain...    28   7.2   


Alignments

>gi|6137318|sp|O75312|ZPR1_HUMAN   Zinc-finger protein ZPR1 (Zinc finger protein 259)
          Length = 459

 Score =  776 bits (2004), Expect = 0.0
 Identities = 390/401 (97%), Positives = 390/401 (97%)

Query: 1   MTRLLLTKIPFFREIIVSSFSCEHCGWNNTEIQSAGRIQDQGVRYTLSVRALEDMNREVV 60
           MTRLLLTKIPFFREIIVSSFSCEHCGWNNTEIQSAGRIQDQGVRYTLSVRALEDMNREVV
Sbjct: 59  MTRLLLTKIPFFREIIVSSFSCEHCGWNNTEIQSAGRIQDQGVRYTLSVRALEDMNREVV 118

Query: 61  KTDSAATRIPELDFEIPAFSQKGALTTVEGLITRAISGLEQDQPARRANKDATAERIDEF 120
           KTDSAATRIPELDFEIPAFSQKGALTTVEGLITRAISGLEQDQPARRANKDATAERIDEF
Sbjct: 119 KTDSAATRIPELDFEIPAFSQKGALTTVEGLITRAISGLEQDQPARRANKDATAERIDEF 178

Query: 121 IVKLKELKQVASPFTLIIDDPSGNSFVENPHAPQKDDALVITHYNRTRQQEEMLGLQXXX 180
           IVKLKELKQVASPFTLIIDDPSGNSFVENPHAPQKDDALVITHYNRTRQQEEMLGLQ   
Sbjct: 179 IVKLKELKQVASPFTLIIDDPSGNSFVENPHAPQKDDALVITHYNRTRQQEEMLGLQEEA 238

Query: 181 XXXXXXXXDLRNEVLQFSTNCPECNAPAQTNMKLVQIPHFKEVIIMATNCENCGHRTNEV 240
                   DLRNEVLQFSTNCPECNAPAQTNMKLVQIPHFKEVIIMATNCENCGHRTNEV
Sbjct: 239 PAEKPEEEDLRNEVLQFSTNCPECNAPAQTNMKLVQIPHFKEVIIMATNCENCGHRTNEV 298

Query: 241 KSGGAVEPLGTRITLHITDASDMTRDLLKSETCSVEIPELEFELGMAVLGGKFTTLEGLL 300
           KSGGAVEPLGTRITLHITDASDMTRDLLKSETCSVEIPELEFELGMAVLGGKFTTLEGLL
Sbjct: 299 KSGGAVEPLGTRITLHITDASDMTRDLLKSETCSVEIPELEFELGMAVLGGKFTTLEGLL 358

Query: 301 KDIRELVTKNPFTLGDSSNPGQTERLQEFSQKMDQIIEGNMKAHFIMDDPAGNSYLQNVY 360
           KDIRELVTKNPFTLGDSSNPGQTERLQEFSQKMDQIIEGNMKAHFIMDDPAGNSYLQNVY
Sbjct: 359 KDIRELVTKNPFTLGDSSNPGQTERLQEFSQKMDQIIEGNMKAHFIMDDPAGNSYLQNVY 418

Query: 361 APEDDPEMKVERYKRTFDQNEELGLNDMKTEGYEAGLAPQR 401
           APEDDPEMKVERYKRTFDQNEELGLNDMKTEGYEAGLAPQR
Sbjct: 419 APEDDPEMKVERYKRTFDQNEELGLNDMKTEGYEAGLAPQR 459



 Score =  124 bits (312), Expect = 4e-29
 Identities = 64/200 (32%), Positives = 109/200 (54%), Gaps = 3/200 (1%)

Query: 189 DLRNEVLQFSTNCPECNAPAQTNMKLVQIPHFKEVIIMATNCENCGHRTNEVKSGGAVEP 248
           D   +  +  + C  C     T + L +IP F+E+I+ + +CE+CG    E++S G ++ 
Sbjct: 39  DEEQQPTEIESLCMNCYCNGMTRLLLTKIPFFREIIVSSFSCEHCGWNNTEIQSAGRIQD 98

Query: 249 LGTRITLHITDASDMTRDLLKSETCSVEIPELEFELGMAVLGGKFTTLEGLL-KDIRELV 307
            G R TL +    DM R+++K+++ +  IPEL+FE+      G  TT+EGL+ + I  L 
Sbjct: 99  QGVRYTLSVRALEDMNREVVKTDSAATRIPELDFEIPAFSQKGALTTVEGLITRAISGLE 158

Query: 308 TKNPFTLGDSSNPGQTERLQEFSQKMDQIIEGNMKAHFIMDDPAGNSYLQNVYAPEDDPE 367
              P     ++     ER+ EF  K+ ++ +       I+DDP+GNS+++N +AP+ D  
Sbjct: 159 QDQP--ARRANKDATAERIDEFIVKLKELKQVASPFTLIIDDPSGNSFVENPHAPQKDDA 216

Query: 368 MKVERYKRTFDQNEELGLND 387
           + +  Y RT  Q E LGL +
Sbjct: 217 LVITHYNRTRQQEEMLGLQE 236



>gi|24636263|sp|Q9BY43|SHA2_HUMAN   SNF7 homolog associated with Alix 2 (HSPC134) (CDA04) (SNF7-1)
           (Chromatin-modifying protein) (Charged multivesicular
           body protein 4a) (CHMP4a)
          Length = 222

 Score = 32.0 bits (71), Expect = 0.38
 Identities = 27/114 (23%), Positives = 55/114 (48%), Gaps = 10/114 (8%)

Query: 31  EIQSAGRIQDQGVRYTL-SVRALEDMNREVVKTDSAATRIPELDFEIPAFSQKGALTTVE 89
           E+Q+A +   +  R  L ++R  +   +++ +TD     +  L+F+  A   + A T  E
Sbjct: 47  ELQTAKKYGTKNKRAALQALRRKKRFEQQLAQTDGT---LSTLEFQREAI--ENATTNAE 101

Query: 90  GLITRAISGLEQDQPARRANKDATAERIDEFIVKLKELKQVASPFTLIIDDPSG 143
            L T  ++     Q  ++A +D   +++DE +  + E ++VA   +  I  P G
Sbjct: 102 VLRTMELAA----QSMKKAYQDMDIDKVDELMTDITEQQEVAQQISDAISRPMG 151



>gi|14194461|sp|Q99996|AKAP9_HUMAN   A-kinase anchor protein 9 (Protein kinase A anchoring protein 9)
            (PRKA9) (A-kinase anchor protein 450 kDa) (AKAP 450)
            (A-kinase anchor protein 350 kDa) (AKAP 350) (hgAKAP 350)
            (AKAP 120 like protein) (Hyperion protein) (Yotiao
            protein) (Centrosome- and Golgi-localized PKN-associated
            protein) (CG-NAP)
          Length = 3911

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 22/92 (23%), Positives = 45/92 (48%), Gaps = 6/92 (6%)

Query: 300  LKDIRELVTKNPFTLGDSSNPGQTERLQEFSQKMDQIIEGNMKAHFIMDDPAGNSYLQNV 359
            +++ REL+++    +   + P + + LQE  + M + +E   +A  + DD       + V
Sbjct: 1981 IQEERELLSRQKEAMKAEAGPVEQQLLQETEKLMKEKLEVQCQAEKVRDD-----LQKQV 2035

Query: 360  YAPEDDPEMKVERYKRTFDQNEELGLNDMKTE 391
             A E D E +V R+    +Q +   L D++ +
Sbjct: 2036 KALEIDVEEQVSRFIE-LEQEKNTELMDLRQQ 2066



>gi|20454926|sp|Q96RT8|GCP5_HUMAN   Gamma-tubulin complex component 5 (GCP-5)
          Length = 1024

 Score = 28.5 bits (62), Expect = 4.2
 Identities = 21/79 (26%), Positives = 37/79 (46%), Gaps = 10/79 (12%)

Query: 87  TVEGLITRAISGLEQDQPARRANKDATAERIDEFIVKLKELK-----QVASPFTLIIDDP 141
           T+EG+  + +  +  D     + K  T E ++  +  +KE+K      + S    + D P
Sbjct: 64  TIEGIYEKFV--IHSDLSKAASWKRLTEEFLNAPLPSIKEIKTDAHYSILSLLLCLSDSP 121

Query: 142 SGNSFVENP---HAPQKDD 157
           S +S+VE P      +KDD
Sbjct: 122 SNSSYVETPRNKEVEKKDD 140



>gi|48475012|sp|Q9UHD9|UBQ2_HUMAN   Ubiquilin 2 (Protein linking IAP with cytoskeleton-2) (PLIC-2)
           (hPLIC-2) (Ubiquitin-like product Chap1/Dsk2) (DSK2
           homolog) (Chap1) (HRIHFB2157)
          Length = 624

 Score = 28.5 bits (62), Expect = 4.2
 Identities = 21/91 (23%), Positives = 44/91 (48%), Gaps = 10/91 (10%)

Query: 307 VTKNPFTLGDSSNPGQTERLQEFSQKMDQIIEGNMKAHFIMDDPAGNSYLQNVYAPEDDP 366
           + +NPF     SNP    +L   + +M Q+I+ N +   ++++P     ++       +P
Sbjct: 185 IMENPFVQSMLSNPDLMRQLIMANPQMQQLIQRNPEISHLLNNP---DIMRQTLEIARNP 241

Query: 367 EMKVERYKRTFDQNEELGLNDMKT--EGYEA 395
            M  E  +     N++L L+++++   GY A
Sbjct: 242 AMMQEMMR-----NQDLALSNLESIPGGYNA 267



>gi|38372816|sp|Q8NH60|O52J3_HUMAN   Olfactory receptor 52J3
          Length = 311

 Score = 27.7 bits (60), Expect = 7.2
 Identities = 24/85 (28%), Positives = 39/85 (45%), Gaps = 9/85 (10%)

Query: 5   LLTKIPFFREIIVSSFSCEHCGWNNTEIQSAGRIQDQGVRYTLSVRALEDMNREVVKTD- 63
           L+ ++PF +  I++   CEH G       S G I+  G+ Y L V +   +N  ++    
Sbjct: 164 LIYRLPFCQAHIIAHSYCEHMGIAKL---SCGNIRINGI-YGLFVVSFFVLNLVLIGISY 219

Query: 64  ----SAATRIPELDFEIPAFSQKGA 84
                A  R+P  D ++ A S  GA
Sbjct: 220 VYILRAVFRLPSHDAQLKALSTCGA 244



>gi|17369320|sp|Q9NRC6|SPCR_HUMAN   Spectrin beta chain, brain 4 (Spectrin, non-erythroid beta chain 4)
            (Beta-V spectrin) (BSPECV)
          Length = 3674

 Score = 27.7 bits (60), Expect = 7.2
 Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 6/49 (12%)

Query: 289  LGGKFTTLEGLLKDIRELVTKNPFTLGDSSNPGQTERLQEFSQKMDQII 337
            L G+  TL+GLLK ++E V +       +    +T+  Q F Q+  Q++
Sbjct: 1073 LQGQVETLQGLLKQVQEQVAQR------ARRQAETQARQSFLQESQQLL 1115






  Database: Non-redundant SwissProt sequences
    Posted date:  Mar 15, 2005 10:11 AM
  Number of letters in database: 60,490,055
  Number of sequences in database:  164,271
  
Lambda     K      H
   0.316    0.133    0.379 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 869,424
Number of Sequences: 164271
Number of extensions: 37267
Number of successful extensions: 89
Number of sequences better than 10.0: 0
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 89
Number of HSP's gapped (non-prelim): 0
length of query: 401
length of database: 6,424,444
effective HSP length: 98
effective length of query: 303
effective length of database: 5,257,754
effective search space: 1593099462
effective search space used: 1593099462
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (27.3 bits)







 


 
Format
  


 


 
Show
  Graphical OverviewLinkoutSequence RetrievalNCBI-giAlignmentPSSMBioseq in HTMLPlain textASN.1XMLformat


 


 
Use new formatter
  Masking CharacterDefault(X for protein, n for nucleotide)Lower Case
Masking ColorBlackGreyRed



 


 
Number of:
  Descriptions01050100250500
Alignments01050100250500



 


 
Alignment view
  PairwisePairwise with identitiesquery-anchored with identitiesquery-anchored without identitiesflat query-anchored with identitiesflat query-anchored without identitiesHit Table


 


 
Format for PSI-BLAST
  with inclusion threshold:


 


 
Limit results by entrez query
   or select from:All organismsViruses [ORGN]Archaea [ORGN]Bacteria [ORGN]Eukaryota [ORGN]Viridiplantae [ORGN]Fungi [ORGN]Metazoa [ORGN]Arthropoda [ORGN]Vertebrata [ORGN]Mammalia [ORGN]Rodentia [ORGN]Primates [ORGN]-------------------Aeropyrum pernix [ORGN]Aquifex aeolicus [ORGN]Arabidopsis thaliana [ORGN]Bacillus subtilis [ORGN]Bos taurus [ORGN]Caenorhabditis elegans [ORGN]Canis familiaris[ORGN]Danio rerio [ORGN]Dictyostelium discoideum [ORGN]Drosophila melanogaster [ORGN]Escherichia coli [ORGN]Gallus gallus [ORGN]Homo sapiens [ORGN]Human immunodeficiency virus type 1 [ORGN]Methanococcus jannaschii [ORGN]Mus musculus [ORGN]Oryctolagus cuniculus [ORGN]Oryza sativa [ORGN]Ovis aries [ORGN]Plasmodium falciparum [ORGN]Rattus norvegicus [ORGN]Saccharomyces cerevisiae [ORGN]Schizosaccharomyces pombe [ORGN]Xenopus tropicalis[ORGN]Simian immunodeficiency virus [ORGN]Sus scrofa[ORGN]Synechocystis PCC6803 [ORGN]Takifugu rubripes [ORGN]Xenopus laevis [ORGN]Zea mays [ORGN]


 


 
Expect value range:
    







 or