gc_object_start: gene_grailexp --organism human --output pretty --matchorg human --dbpat grailexp_v3 # Service: gene_grailexp # Version: 3.3 # Description: GAT GrailEXP Gene Prediction Service # Last Modified: October, 2001 # Tool: GrailEXP 3.3 from ORNL. Last updated: October, 2001. # Database: GrailEXP Database Thu Feb 27 16:15:37 EST 2003 from NCBI/TIGR/Baylor/Riken (15960696 entries). Last updated: Thu Feb 27 16:15:37 2003. # Sequence Name: >gene_grailexp|PID=2727 # Sequence Length: 500000 # Output_begin: pretty -------------------------------------------------------------------------------- GrailEXP v3.31 [March, 2002] http://compbio.ornl.gov/grailexp/ Authors: Doug Hyatt, Manesh Shah, Victor Olman, Richard Mural, Ying Xu, and Edward C. Uberbacher, 1996-2001 Reference: "Automated Gene Identification in Large-Scale Genomic Sequences", Xu, Y. and Uberbacher, E.C., Journal of Computational Biology, Volume 4, Number 3, 1997 Sequence: >gene_grailexp|PID=2727 (500000 bp) -------------------------------------------------------------------------------- GAWAIN Gene Predictions (10 predicted, 6 with database similarity) Genes with Database Similarity (6 predicted, 1 with alternative splices) Gene 1, Variant 1 Strand: - Bounds: 16718-66744 Exons: 2 Start Codon: Yes Stop Codon: Yes Top-Scoring Reference: BX089473.1 (765 bp) (100% id, 16718-66744) >human|BX089473.1|est_human|dbEST - gi|27825971|emb|BX089473.1|BX08947 3 BX089473 Soares retina N2b4HR Homo sapiens cDNA clone IMAGp998C10439 ; IMAGE:221121 Reference Path: BX089473.1 (765 bp) (100%, 16718-66744) ---Index---- --------Exons-------- ---------CDS--------- -Ph- -Fr- -Len- -Scr- PolyA 12941 12946 ... ... . . 6 87 1.1.2 16718 16765 16764 16765 1 0 48 100 1.1.1 66600 66744 66600 66714 0 2 145 100 Gene 2, Variant 1 Strand: + Bounds: 206848-207284 Exons: 1 Start Codon: Yes Stop Codon: Yes Top-Scoring Reference: AW805200.1 (525 bp) (97% id, 206848-207284) >human|AW805200.1|est_human|dbEST - gi|7857070|gb|AW805200.1|AW805200 QV1-UM0099-050400-149-d09 UM0099 Homo sapiens cDNA Reference Path: AW805200.1 (525 bp) (97%, 206848-207284) ---Index---- --------Exons-------- ---------CDS--------- -Ph- -Fr- -Len- -Scr- Promoter 205222 205496 ... ... . . 275 81 2.1.1 206848 207284 207046 207153 0 0 437 97 PolyA 208293 208298 ... ... . . 6 79 Gene 3, Variant 1 Strand: + Bounds: 276210-354541 Exons: 20 Start Codon: No Stop Codon: Yes Top-Scoring Reference: AF042838 (4693 bp) (96% id, 276210-354466) >human|AF042838|baylor_ht|AF042838|AF042838 Homo sapiens MEK kinase 1 (MEKK1) mRNA, partial cds Reference Path: AF042838 (4693 bp) (96%, 276210-354466) AU132367.1 (836 bp) (97%, 346532-354541) ---Index---- --------Exons-------- ---------CDS--------- -Ph- -Fr- -Len- -Scr- 3.1.1 276210 276633 276210 276633 1 1 424 99 3.1.2 317178 317328 317178 317328 2 0 151 100 3.1.3 320293 320493 320293 320493 0 0 201 100 3.1.4 325312 325512 325312 325512 0 0 201 100 3.1.5 325918 326034 325918 326034 0 0 117 99 3.1.6 326407 326555 326407 326555 0 0 149 99 3.1.7 332488 332609 332488 332609 2 1 122 100 3.1.8 333219 333300 333219 333300 1 1 82 100 3.1.9 333403 333583 333403 333583 2 1 181 100 3.1.10 335610 335888 335610 335888 0 2 279 100 3.1.11 339558 339679 339558 339679 0 2 122 100 3.1.12 341289 341380 341289 341380 2 0 92 100 3.1.13 341661 341850 341661 341850 1 1 190 100 3.1.14 342148 343444 342148 343444 2 1 1297 95 3.1.15 344105 344257 344105 344257 0 1 153 100 3.1.16 345242 345404 345242 345404 0 1 163 100 3.1.17 346510 346641 346510 346641 1 2 132 100 3.1.18 347956 348098 347956 348098 1 2 143 100 3.1.19 348804 348935 348804 348935 0 2 132 100 3.1.20 354109 354541 354109 354258 0 0 433 96 PolyA 355052 355057 ... ... . . 6 87 Gene 4, Variant 1 Strand: - Bounds: 355121-355575 Exons: 1 Start Codon: No Stop Codon: Yes Top-Scoring Reference: AL133917.1 (709 bp) (96% id, 354977-355687) >human|AL133917.1|est_human|dbEST - gi|6602104|emb|AL133917.1|AL133917 DKFZp761N1614_r1 761 (synonym: hamy2) Homo sapiens cDNA clone DKFZp76 1N1614 5' Reference Path: AW992954.1 (608 bp) (95%, 354704-355312) BG119132.1 (766 bp) (96%, 355163-355780) ---Index---- --------Exons-------- ---------CDS--------- -Ph- -Fr- -Len- -Scr- PolyA 355175 355180 ... ... . . 6 65 4.1.1 355121 355575 355449 355575 2 0 455 99 Gene 5, Variant 1 Strand: + Bounds: 369838-377769 Exons: 6 Start Codon: Yes Stop Codon: Yes Top-Scoring Reference: BC036528.1 (1591 bp) (99% id, 369854-377763) >human|BC036528.1|mgc_human|MGC/NCI - gi|22328097|gb|BC036528.1| Homo sapiens, clone MGC:33648 IMAGE:4827793, mRNA, complete cds Reference Path: BG719045.1 (732 bp) (98%, 369838-371990) BC036528.1 (1591 bp) (99%, 369854-377763) AI989350.1 (373 bp) (100%, 377397-377769) ---Index---- --------Exons-------- ---------CDS--------- -Ph- -Fr- -Len- -Scr- 5.1.1 369838 370321 370224 370321 1 2 484 99 5.1.2 371747 372114 371747 372114 2 2 368 99 5.1.3 373589 373712 373589 373712 1 0 124 100 5.1.4 374452 374567 374452 374567 2 1 116 100 5.1.5 375439 375544 375439 375544 1 2 106 100 5.1.6 377393 377769 377393 377480 2 2 377 100 PolyA 379653 379658 ... ... . . 6 65 Gene 5, Variant 2 Strand: + Bounds: 369838-377769 Exons: 5 Start Codon: Yes Stop Codon: Yes Top-Scoring Reference: BG703195.1 (658 bp) (99% id, 370205-377583) >human|BG703195.1|est_human|dbEST - gi|13975289|gb|BG703195.1|BG703195 602686119F1 NIH_MGC_95 Homo sapiens cDNA clone IMAGE:4818436 5' Reference Path: BG719045.1 (732 bp) (99%, 369838-370321) BG703195.1 (658 bp) (99%, 370205-377583) AI989350.1 (373 bp) (100%, 377397-377769) ---Index---- --------Exons-------- ---------CDS--------- -Ph- -Fr- -Len- -Scr- 5.2.1 369838 370321 370224 370321 1 2 484 99 5.2.2 373589 373712 373589 373712 1 0 124 99 5.2.3 374452 374567 374452 374567 2 1 116 100 5.2.4 375439 375544 375439 375544 1 2 106 100 5.2.5 377393 377769 377393 377480 2 2 377 100 PolyA 379653 379658 ... ... . . 6 65 Gene 6, Variant 1 Strand: - Bounds: 381225-411232 Exons: 12 Start Codon: Yes Stop Codon: Yes Top-Scoring Reference: BC041348.1 (4197 bp) (98% id, 381225-411232) >human|BC041348.1|mgc_human|MGC/NCI - gi|27552790|gb|BC041348.1| Homo sapiens, Similar to hypothetical protein 5730509D14, clone MGC:43770 I MAGE:5272287, mRNA, complete cds Reference Path: BC041348.1 (4197 bp) (98%, 381225-411232) ---Index---- --------Exons-------- ---------CDS--------- -Ph- -Fr- -Len- -Scr- PolyA 379987 379992 ... ... . . 6 65 6.1.12 381225 384163 383706 384163 1 0 2939 99 6.1.11 384269 384411 384269 384411 2 0 143 100 6.1.10 384493 384620 384493 384620 0 0 128 94 6.1.9 389345 389436 389345 389436 1 1 92 100 6.1.8 391242 391323 391242 391323 0 2 82 100 6.1.7 393825 393976 393825 393976 1 0 152 100 6.1.6 396006 396078 396006 396078 0 2 73 100 6.1.5 396244 396329 396244 396329 1 2 86 100 6.1.4 398156 398276 398156 398276 0 0 121 100 6.1.3 399461 399595 399461 399586 0 1 135 100 6.1.2 407504 407649 ... ... 1 1 146 100 6.1.1 411206 411232 ... ... 1 0 27 100 Promoter 399969 400092 ... ... . . 124 56 >GrailEXP Gene 1, Var 1 mRNA|Similar to BX089473.1 ggcccttaatcattaaaaaaaactttagagatgctggctgagccatcagtgagaacatggatgcatacac agaacctacatcttgtcatctctgctcttcgaggaatggagctggagaggcagagaagcaatgaagccga attctgagtagtatactctgatgaagaggatattttacaagcatagaaaaagg >GrailEXP Gene 1, Var 1 protein|Derived from similarity to BX089473.1 MLAEPSVRTWMHTQNLHLVISALRGMELERQRSNEAEF* >GrailEXP Gene 2, Var 1 mRNA|Similar to AW805200.1 gaacagattatagttcacataaaactgatcgaatctaaaatgagttctttttgagacagtagctctgtaa ttctgtagtatgtggtagctgagcagatggcctacaaggaggaagactcttgactaaggatcaaatgtta tgtgttgaaatgccattttcacttgaaaaattgtattgttcctcctgtatgtcatcacatggtagatgat actaaccatcagtgtgaggagaggggagctgcagcaggagctcaggcagatataattggaaggacccagg aagtttccatgacagacctgacttagttgattcggagccagtgcccaatccctacacctggcaggcatta gaaatgccaggagccactgggaggaaagaagggcctgatatctggcattttaggtggcctgaggcaagag ggagcttgagcagaggt >GrailEXP Gene 2, Var 1 protein|Derived from similarity to AW805200.1 MVDDTNHQCEERGAAAGAQADIIGRTQEVSMTDLT* >GrailEXP Gene 3, Var 1 mRNA|Similar to AF042838 cgagccctgaggcaggcggcggcggaggagccctcaaggcgagcagcgcgcccgcggctgccgcgggact gctgcgggaggcgggcagcgggggccgcgagcgggcggactggcggcggcggcagctgcgcaaagtgcgg agtgtggagctggaccagctgcctgagcagccgctcttccttgccgcctcaccgccggcctcctcgactt ccccgtcgccggagcccgcggacgcagcggggagtgggaccggcttccagcctgtggcggtgccgccgcc ccacggagccgcgagccgcggcggcgcccaccttaccgagtcggtggcggcgccggacagcggcgcctcg agtcccgcagcggccgagcccggggagaagcgggcgcccgccgccgagccgtctcctgcagcggcccccg ccggtcgtgagatggagaataaagaaactctcaaagggttgcacaagatggatgatcgtccagaggaacg aatgatcagggagaaactgaaggcaacctgtatgccagcctggaagcacgaatggttggaaaggagaaat aggcgagggcctgtggtggtaaaaccaatcccagttaaaggagatggatctgaaatgaatcacttagcag ctgagtctccaggagaggtccaggcaagtgcggcttcaccagcttccaaaggccgacgcagtccttctcc tggcaactccccatcaggtcgcacagtgaaatcagaatctccaggagtaaggagaaaaagagtttcccca gtgccttttcagagtggcagaatcacaccaccccgaagagccccttcaccagatggcttctcaccatata gccctgaggaaacaaaccgccgtgttaacaaagtgatgcgggccagactgtacttactgcagcagatagg gcctaactctttcctgattggaggagacagcccagacaataaataccgggtgtttattgggcctcagaac tgcagctgtgcacgtggaacattctgtattcatctgctatttgtgatgctccgggtgtttcaactagaac cttcagacccaatgttatggagaaaaactttaaagaattttgaggttgagagtttgttccagaaatatca cagtaggcgtagctcaaggatcaaagctccatctcgtaacaccatccagaagtttgtttcacgcatgtca aattctcatacattgtcatcatctagtacttctacgtctagttcagaaaacagcataaaggatgaagagg aacagatgtgtcctatttgcttgttgggcatgcttgatgaagaaagtcttacagtgtgtgaagacggctg caggaacaagctgcaccaccactgcatgtcaatttgggcagaagagtgtagaagaaatagagaaccttta atatgtcccctttgtagatctaagtggagatctcatgatttctacagccacgagttgtcaagtcctgtgg attccccttcttccctcagagctgcacagcagcaaaccgtacagcagcagcctttggctggatcacgaag gaatcaagagagcaattttaaccttactcattatggaactcagcaaatccctcctgcttacaaagattta gctgagccatggattcaggtgtttggaatggaactcgttggctgcttattttctagaaactggaatgtga gagagatggccctcaggcgtctttcccatgatgtcagtggggccctgctgttggcaaatggggagagcac tggaaattctgggggcagcagtggaagcagcccgagtgggggagccaccagtgggtcttcccagaccagt atctcaggagatgtggtggaggcatgctgcagcgttctgtcaatggtctgtgctgaccctgtctacaaag tgtacgttgctgctttaaaaacattgagagccatgctggtatatactccttgccacagtttagcggaaag aatcaaacttcagagacttctccagccagttgtagacaccatcctagtcaaatgtgcagatgccaatagc cgcacaagtcagctgtccatatcaacactgttggaactgtgcaaaggccaagcaggagagttggcagttg gcagagaaatactaaaagctggatccattggtattggtggtgttgattatgtcttaaattgtattcttgg aaaccaaactgaatcaaacaattggcaagaacttcttggccgcctttgtcttatagatagactgttgttg gaatttcctgctgaattttatcctcatattgtcagtactgatgtttcacaagctgagcctgttgaaatca ggtataagaagctgctgtccctcttaacctttgctttgcagtccattgataattcccactcaatggttgg caaactttccagaaggatctacttgagttctgcaagaatggttactacagtaccccatgtgttttcaaaa ctgttagaaatgctgagtgtttccagttccactcacttcaccaggatgcgtcgccgtttgatggctattg cagatgaggtggaaattgccgaagccatccagttgggcgtagaagacactttggatggtcaacaggacag cttcttgcaggcatctgttcccaacaactatctggaaaccacagagaacagttcccctgagtgcacagtc catttagagaaaactggaaaaggattatgtgctacaaaattgagtgccagttcagaggacatttctgaga gactggccagcatttcagtaggaccttctagttnnnnnnnnnnnnnnnnnnnnnnnnnngagcaaccaaa gccaatggttcaaacaaaaggcagaccccacagtcagtgtttgaactcctctcctttatctcatcattcc caattaatgtttccagccttgtcaaccccttcttcttctaccccatctgtaccagctggcactgcaacag atgtctctaagcatagacttcagggattcattccctgcagaataccttctgcatctcctcaaacacagcg caagttttctctacaattccacagaaactgtcctgaaaacaaagactcagataaactttccccagtcttt actcagtcaagacccttgccctccagtaacatacacaggccaaagccatctagacctaccccaggtaata caagtaaacagggagatccctcaaaaaatagcatgacacttgatctgaacagtagttccaaatgtgatga cagctttggctgtagcagcaatagtagtaatgctgttatacccagtgacgagacagtgttcaccccagta gaggagaaatgcagattagatgtcaatacagagctcaactccagtattgaggaccttcttgaagcatcta tgccttcaagtgatacaacagtaacttttaagtcagaagttgctgtcctgtctcctgaaaaggctgaaaa tgatgatacctacaaagatgatgtgaatcataatcaaaagtgcaaagagaagatggaagctgaagaagaa gaagctttagcaattgccatggcaatgtcagcgtctcaggatgccctccccatagttcctcagctgcagg ttgaaaatggagaagatatcatcattattcaacaggatacaccagagactctaccaggacataccaaagc aaaacaaccgtatagagaagacactgaatggctgaaaggtcaacagataggccttggagcattttcttct tgttatcaggctcaagatgtgggaactggaactttaatggctgttaaacaggtgacttatgtcagaaaca catcttctgagcaagaagaagtagtagaagcactaagagaagagataagaatgatgagccatctgaatca tccaaacatcattaggatgttgggagccacgtgtgagaagagcaattacaatctcttcattgaatggatg gcagggggatcggtggctcatttgctgagtaaatatggagccttcaaagaatcagtagttattaactaca ctgaacagttactccgtggcctttcgtatctccatgaaaaccaaatcattcacagagatgtcaaaggtgc caatttgctaattgacagcactggtcagagactaagaattgcagattttggagctgcagccaggttggca tcaaaaggaactggtgcaggagagtttcagggacaattactggggacaattgcatttatggcacctgagg tactaagaggtcaacagtatggaaggagctgtgatgtatggagtgttggctgtgctattatagaaatggc ttgtgcaaaaccaccatggaatgcagaaaaacactccaatcatcttgctttgatatttaagattgctagt gcaactactgctccatcgatcccttcacatttgtctcctggtttacgagatgtggctcttcgttgtttag aacttcaacctcaggacagacctccatcaagagagctactgaagcatccagtctttcgtactacatggta gccaattatgcagatcaactacagtagaaacaggatgctcaacaagagaaaaaaaacttgtggggaacca cattgatattctactggccatgatgccactgaacagctatgaacgaggccagtggggaacccttacctaa gtatgtgattgacaaatcatgatctgtacctaagctcagtatgcaaaagcccaaactagtgcagaaactg taaactgtgcctttcaaagaactggccctaggtgaacaggaaaacaatgaagtttgcatgactaaattgc agaa >GrailEXP Gene 3, Var 1 protein|Derived from similarity to AF042838 SPEAGGGGGALKASSAPAAAAGLLREAGSGGRERADWRRRQLRKVRSVELDQLPEQPLFLAASPPASSTS PSPEPADAAGSGTGFQPVAVPPPHGAASRGGAHLTESVAAPDSGASSPAAAEPGEKRAPAAEPSPAAAPA GREMENKETLKGLHKMDDRPEERMIREKLKATCMPAWKHEWLERRNRRGPVVVKPIPVKGDGSEMNHLAA ESPGEVQASAASPASKGRRSPSPGNSPSGRTVKSESPGVRRKRVSPVPFQSGRITPPRRAPSPDGFSPYS PEETNRRVNKVMRARLYLLQQIGPNSFLIGGDSPDNKYRVFIGPQNCSCARGTFCIHLLFVMLRVFQLEP SDPMLWRKTLKNFEVESLFQKYHSRRSSRIKAPSRNTIQKFVSRMSNSHTLSSSSTSTSSSENSIKDEEE QMCPICLLGMLDEESLTVCEDGCRNKLHHHCMSIWAEECRRNREPLICPLCRSKWRSHDFYSHELSSPVD SPSSLRAAQQQTVQQQPLAGSRRNQESNFNLTHYGTQQIPPAYKDLAEPWIQVFGMELVGCLFSRNWNVR EMALRRLSHDVSGALLLANGESTGNSGGSSGSSPSGGATSGSSQTSISGDVVEACCSVLSMVCADPVYKV YVAALKTLRAMLVYTPCHSLAERIKLQRLLQPVVDTILVKCADANSRTSQLSISTLLELCKGQAGELAVG REILKAGSIGIGGVDYVLNCILGNQTESNNWQELLGRLCLIDRLLLEFPAEFYPHIVSTDVSQAEPVEIR YKKLLSLLTFALQSIDNSHSMVGKLSRRIYLSSARMVTTVPHVFSKLLEMLSVSSSTHFTRMRRRLMAIA DEVEIAEAIQLGVEDTLDGQQDSFLQASVPNNYLETTENSSPECTVHLEKTGKGLCATKLSASSEDISER LASISVGPSSXXXXXXXXXEQPKPMVQTKGRPHSQCLNSSPLSHHSQLMFPALSTPSSSTPSVPAGTATD VSKHRLQGFIPCRIPSASPQTQRKFSLQFHRNCPENKDSDKLSPVFTQSRPLPSSNIHRPKPSRPTPGNT SKQGDPSKNSMTLDLNSSSKCDDSFGCSSNSSNAVIPSDETVFTPVEEKCRLDVNTELNSSIEDLLEASM PSSDTTVTFKSEVAVLSPEKAENDDTYKDDVNHNQKCKEKMEAEEEEALAIAMAMSASQDALPIVPQLQV ENGEDIIIIQQDTPETLPGHTKAKQPYREDTEWLKGQQIGLGAFSSCYQAQDVGTGTLMAVKQVTYVRNT SSEQEEVVEALREEIRMMSHLNHPNIIRMLGATCEKSNYNLFIEWMAGGSVAHLLSKYGAFKESVVINYT EQLLRGLSYLHENQIIHRDVKGANLLIDSTGQRLRIADFGAAARLASKGTGAGEFQGQLLGTIAFMAPEV LRGQQYGRSCDVWSVGCAIIEMACAKPPWNAEKHSNHLALIFKIASATTAPSIPSHLSPGLRDVALRCLE LQPQDRPPSRELLKHPVFRTTW* >GrailEXP Gene 4, Var 1 mRNA|Similar to AL133917.1 gactcacacacacacaaaaagattaaaaagctaccattttccttcaggattccatgcatctgaatttaac tccagactaaaaccgttaggtaactgtgcaaaatccaaggaattagtgtataaatgaaattcaattccat ttttctttctgaacacattttccaagttcaaagcaaatgtactgtttaaaaacattactgattggtagtt gaataatctttttaaaaaatgatctgccaggcctactgtaaagagatgatgcatggtaaaaggaaaatgg cagctctatgttactaccagtagtgaaggtgaatgatggattgttacatacagagtaagacttaaatgtt gtgaagtttcctacagtttgacaaccaaaacatctaaaaaattcaaataaattttaaggtaatcttgatc ttggttgtgagttgcaccagagaggacagtttatt >GrailEXP Gene 4, Var 1 protein|Derived from similarity to AL133917.1 THTHTKRLKSYHFPSGFHASEFNSRLKPLGNCAKSKELVYK* >GrailEXP Gene 5, Var 1 mRNA|Similar to BC036528.1 agacagccgtgacagagaaactaggcggtccgctcctgggacgcggtctcgggggcgggttcgcccctga ggcccggtgacccttcgcccgcaaccagggctagcgcttgtgtgcgcccacggaagcacccgagcgaccg gagaaagaaaaagtggtcaaggggacctccttccagctctacgcgcctctcattcagagaggtgaggtca ggaaaggggaaggacgaagccccagagcaacagaagtcaggcggtgccaggaacactgagagcggagcca ggggaaggcggccgagcgcggccccctctcctcccgggccggggcgggcccgaggcctcgatccgccttc cccgcgccgtcctggtcacggccccgcggggcagccatgcctggccgtctgctgcggggcctgtggcagc gatggcgccgttacaagtaccgcttcgttccctggatcgcactgaacctaagccacaacccgaggaccct ccgatatgttccagaggaatccaaagacaaagttatctcagatgaagatgtcctaggaacattactgaaa gttttccaggctctattcttaaatgatttcaataaacaatcagaaatcttgtctatgcttccagaatctg ttaaatcaaaatatcaagacctactggcagttgaacatcaaggggtgaaactgcttgaaaacagacatca acagcaaagtacctttaaaccagaagaaattctttacaagactttgggtttcagtgttgcccaagcaact agctcattgatttctgctggaaaaggtgtcttcgttactaaaggattggtaccaaaaggcgcagtcgtat ctatgtatcctggtacagtatatcagaagtatgagccgatctttttccagtccattggaaatccgtttat ttttagatgcctggatggggtactcattgatgggaatgacaaagggatatcaaaagttgtgtacagatct tgcaatgggagggatcgactcggccctttaaaaatgagtgatagtacatggctaacgtcagaaattcata accctctggctgtgggacagtatgtcaacaattgttccaatgacagagcagctaatgtctgttatcagga atttgatgtgcctgcagttttccctatagaactgaagcagtatcttccaaacattgcctacagctatgac aaacaaagcccacttcgatgtgttgttcttgtcgcacttagggacatcaatcaaggagaagagctttttt caaactactacacaattgtcagctaactctgtgaatcagaaattattaggttttctactcagctattaat tctaagtgttttttgttaatcacttctctgagttctacctgtaaaacaaatattttgagacttaattgga ataggaatttcttatgtttttgttgatattatatttatgttccaatttcatgataaaagctacttgcttc attacaatttcaaatttgtaatgcaattccaagtttaattggttttcacctaaatacacaatagcttatt aaattaaaacctactctttgaacttataatttcaa >GrailEXP Gene 5, Var 1 protein|Derived from similarity to BC036528.1 MPGRLLRGLWQRWRRYKYRFVPWIALNLSHNPRTLRYVPEESKDKVISDEDVLGTLLKVFQALFLNDFNK QSEILSMLPESVKSKYQDLLAVEHQGVKLLENRHQQQSTFKPEEILYKTLGFSVAQATSSLISAGKGVFV TKGLVPKGAVVSMYPGTVYQKYEPIFFQSIGNPFIFRCLDGVLIDGNDKGISKVVYRSCNGRDRLGPLKM SDSTWLTSEIHNPLAVGQYVNNCSNDRAANVCYQEFDVPAVFPIELKQYLPNIAYSYDKQSPLRCVVLVA LRDINQGEELFSNYYTIVS* >GrailEXP Gene 5, Var 2 mRNA|Similar to BG703195.1 agacagccgtgacagagaaactaggcggtccgctcctgggacgcggtctcgggggcgggttcgcccctga ggcccggtgacccttcgcccgcaaccagggctagcgcttgtgtgcgcccacggaagcacccgagcgaccg gagaaagaaaaagtggtcaaggggacctccttccagctctacgcgcctctcattcagagaggtgaggtca ggaaaggggaaggacgaagccccagagcaacagaagtcaggcggtgccaggaacactgagagcggagcca ggggaaggcggccgagcgcggccccctctcctcccgggccggggcgggcccgaggcctcgatccgccttc cccgcgccgtcctggtcacggccccgcggggcagccatgcctggccgtctgctgcggggcctgtggcagc gatggcgccgttacaagtaccgcttcgttccctggatcgcactgaacctaagccacaacccgagxxgtac agtatatcagaagtatgagccgatctttttccagtccattggaaatccgtttatttttagatgcctggat ggggtactcattgatgggaatgacaaagggatatcaaaagttgtgtacagatcttgcaatgggagggatc gactcggccctttaaaaatgagtgatagtacatggctaacgtcagaaattcataaccctctggctgtggg acagtatgtcaacaattgttccaatgacagagcagctaatgtctgttatcaggaatttgatgtgcctgca gttttccctatagaactgaagcagtatcttccaaacattgcctacagctatgacaaacaaagcccacttc gatgtgttgttcttgtcgcacttagggacatcaatcaaggagaagagcttttttcaaactactacacaat tgtcagctaactctgtgaatcagaaattattaggttttctactcagctattaattctaagtgttttttgt taatcacttctctgagttctacctgtaaaacaaatattttgagacttaattggaataggaatttcttatg tttttgttgatattatatttatgttccaatttcatgataaaagctacttgcttcattacaatttcaaatt tgtaatgcaattccaagtttaattggttttcacctaaatacacaatagcttattaaattaaaacctactc tttgaacttataatttcaa >GrailEXP Gene 5, Var 2 protein|Derived from similarity to BG703195.1 MPGRLLRGLWQRWRRYKYRFVPWIALNLSHNPXXTVYQKYEPIFFQSIGNPFIFRCLDGVLIDGNDKGIS KVVYRSCNGRDRLGPLKMSDSTWLTSEIHNPLAVGQYVNNCSNDRAANVCYQEFDVPAVFPIELKQYLPN IAYSYDKQSPLRCVVLVALRDINQGEELFSNYYTIVS* >GrailEXP Gene 6, Var 1 mRNA|Similar to BC041348.1 aggcttcttttggaagttcgagcccagttgggtctttgtcttctgaggatcatgattttgaccccactgc tgagatgttggtccatgactatgatgatgaaagaactcttgaagaagaggaaatgatggatgagggtaaa aacttcagttcagaaattgaagacttagaaaaggaaggaaccatgcctctagaagatttactggcattct atggctatgaacctacaattccagcagttgcaaattccagtgcaaatagttccccaagtgaactggcaga tgaactaccagacatgacactagacaaagaggaaatagcaaaagacctgttgtcaggtgatgacgaggaa actcagtcttctgcggatgatctgacgccatctgtgacttcccatgaaacttctgatttcttccctaggc ctttacgatcaaatactgcatgtgatggtgataaggaatcagaggttgaagatgttgaaacagacagtgg taattcacctgaagatttgaggaaggaaataatgattggtttacaatatcaggcagagattcccccttat cttggagagtacgatggtaatgagaaagtatatgaaaacgaagaccagttactttggtgtcctgatgtgg ttttggagagcaaagttaaggaataccttgttgagacttcattaaggactggcagtgaaaaaataatgga taggatttctgcaggaacacacacaagggacaatgaacaggcattatatgaacttctcaagtgtaaccac aatataaaggaagcaatcgaaagatactgctgcaatggaaaggcctctcaaggaatgactgcatggacgg aagaagaatgccgaagctttgaacatgcactcatgctttttggaaaagattttcatcttatacagaagaa taaggtgagaactaggacagttgctgagtgtgtagcattctactatatgtggaagaaatctgaacgttat gattactttgctcaacagacaagatttgggaaaaaaagatataaccatcaccctggagttacggactata tggatcgtttagtagatgaaacagaagctttgggtgggacggtaaatgcttcagccttaacttctaaccg gcctgagcctattcctgatcaacagctaaacattctcaactccttcactgccagtgacttgacagctttg accaacagtgtagcaaccgtctgcgaccccacagatgtgaattgtttggatgatagctttcctccactgg gcaacacaccccgtggacaagttaatcatgtgcctgttgtaacagaagagttactcaccctgcccagcaa tggggaaagtgattgttttaatttatttgagactggattttatcactcggagctaaaccctatgaacatg tgcagtgaagagtcagagagaccagcaaaaagattgaaaatgggcattgccgtccctgaatcctttatga atgaagtttctgtaaataacctgggtgtggactttgaaaatcacacacatcacatcaccagtgccaaaat ggctgtttctgtggctgactttggcagtctctctgccaacgagaccaatggtttcatcagtgcccatgct ctgcatcagcacgcggccctacactctgagtgacctgagtgaggatcccggaactgcgtgtgcagcacca gtaaacttgaggggagctatcaggtttgcatagtctttcactggaagtttgaacctttctcactatgaca tcagtgatgtcagtatgtatagaactatatcttgatttatcaagagtattttcatttttcaatccataaa tgtggaaatgaactatgatcagcagagttgggaactaagattgaactctgtggtgcagctttaagctctg cttctctcttcctcatctcccaatacctcttccccactcccttctttttctattcttttgtgttccccac tgccctcactcccaattttaaaacctgtagacagaggccaccagctcaaaaccagcacagatgttctgaa ctgaatggtgtggcctgtttttgtgtaaattccttttgccgtaatggatgcagtggaataacaatgttta caggtaccgatcccgatccctgctcaatgtagcatttttttggttttattttcttaataaaagcaggggt aggtttctttaaactgcacaaacatgcaaggattttttaaaaatggaaacttctctcatgttattcaact agagcacttcagtttacaaaacagcaagtccatctttatggaagccagcacaaggaactgtgtgcaaata atgaagacgcttgcttggatcctgtttcaaaattctagaccagggctaccttacacagaattggtcatgt tactgccaggagatttctgtgtaacttcatttattggctacagttttggcatttgaagatgtggtactca gatggggttttgtccaccattgtcaagattgtaatcttaaaaatcataccagtcattgataatttagttt atcctgaggcagtcgacttgcagaggcacagtctacaaagcctaggatgttgccactcaatggtttacat tttgggacatcttttaagttgtttgtagcactgcagttcaaagtgttaatatttagagggacttctagat tttatacctaatgcagtagaaccttgaagtatatttaagcttttttgttaagcttgaacagttggcaaga ataatgtgagttcctatctgaaatagaatggtacattaccacttttaagttttaaaaattgatagatgtt cagatgtatctcaaactcagttttatttttattccaaatattgtgaatgagaagccattgtcctaaactt tggccatttttgtgctataaacatgcatttttaagttataaggtgaatcaaacaatatgtaatacagtat taggatgtaatctttgcttttgtagtactgttaaaatagagaattatgttgtttgcaccgtcttaattaa aattcttgatttttactagttgctttgcaaaaaacaaatgtttggctgcattgctaatatttgtaagtat aagttgcttcaaggttgtgctgatgagtagataggatgtagtgatcttagtagtgattgaaagggagggt atttattatacaaactgtgaactgcaatgacatccttagttttggatgatgtgtattcttgtttttcttt gcagcattttaatgaagattgctttgaagtgtttacgcagtagcacattagtataaaatttagtttagca cagtggacaaaaagtagttaaattaataacttaaaatcagtctctaatttatacatctgaagtatagcat tcctgtatgcacacagtaaataatgggtagcctgggctctgtgttactttcttgtatttttatccaagtt gtcagcttcttattgctgtgttgttgtgctaaactttgaaccttatttcttttattaaaaatcagtacac tttctataatttagtaagatactggccataatcttccattgttataaccttaattttcactctgggttta cagtggctggtctgtataaataatttacacaaagatgactgaatgctaataccagttgcacttaaatgaa catgcccattctcagtagctgatgcagtaatatattcagtttatctatgcattgctggggtcttgatata agatggaaacagtgtttcttatctaaagttttgattatcagcaagttgaatggacactttagttatttaa ataaagatttttgaccaaaatccagaaaatggtatgagagaaaaataaattccagctagtttaatagatt tttaaatgtcaatctgattttagcctcttagagagtgctaactagctggtaatgtttacttttaattcct tgttaaaatgaggcaataatttgcaagatttttgtatataagtgtaaattcttcatatctttttagatct aattcaatattttctgactacttctgccatgtataataccatttttgtgcatgcttgatgtgacattcat aaattgtaccactatgactttatccatgtaaaatagctatttattgaattttcttttaaaagct >GrailEXP Gene 6, Var 1 protein|Derived from similarity to BC041348.1 MPLEDLLAFYGYEPTIPAVANSSANSSPSELADELPDMTLDKEEIAKDLLSGDDEETQSSADDLTPSVTS HETSDFFPRPLRSNTACDGDKESEVEDVETDSGNSPEDLRKEIMIGLQYQAEIPPYLGEYDGNEKVYENE DQLLWCPDVVLESKVKEYLVETSLRTGSEKIMDRISAGTHTRDNEQALYELLKCNHNIKEAIERYCCNGK ASQGMTAWTEEECRSFEHALMLFGKDFHLIQKNKVRTRTVAECVAFYYMWKKSERYDYFAQQTRFGKKRY NHHPGVTDYMDRLVDETEALGGTVNASALTSNRPEPIPDQQLNILNSFTASDLTALTNSVATVCDPTDVN CLDDSFPPLGNTPRGQVNHVPVVTEELLTLPSNGESDCFNLFETGFYHSELNPMNMCSEESERPAKRLKM GIAVPESFMNEVSVNNLGVDFENHTHHITSAKMAVSVADFGSLSANETNGFISAHALHQHAALHSE* Genes with No Database Evidence (4 predicted) Gene 7, Variant 1 Strand: + Bounds: 149825-151077 Exons: 2 Start Codon: Yes Stop Codon: Yes ---Index---- --------Exons-------- ---------CDS--------- -Ph- -Fr- -Len- -Scr- 7.1.1 149825 149927 149825 149927 0 1 103 70 7.1.2 150878 151077 150878 151077 1 0 200 57 PolyA 154790 154795 ... ... . . 6 79 Gene 8, Variant 1 Strand: - Bounds: 231584-232502 Exons: 2 Start Codon: Yes Stop Codon: Yes ---Index---- --------Exons-------- ---------CDS--------- -Ph- -Fr- -Len- -Scr- PolyA 230862 230867 ... ... . . 6 65 8.1.2 231584 231730 231584 231730 0 1 147 58 8.1.1 232083 232502 232083 232502 0 0 420 72 Gene 9, Variant 1 Strand: + Bounds: 425352-425567 Exons: 1 Start Codon: Yes Stop Codon: Yes ---Index---- --------Exons-------- ---------CDS--------- -Ph- -Fr- -Len- -Scr- Promoter 421583 421689 ... ... . . 107 63 9.1.1 425352 425567 425352 425567 0 2 216 80 Gene 10, Variant 1 Strand: + Bounds: 462660-462920 Exons: 1 Start Codon: Yes Stop Codon: Yes ---Index---- --------Exons-------- ---------CDS--------- -Ph- -Fr- -Len- -Scr- Promoter 458076 458185 ... ... . . 110 52 10.1.1 462660 462920 462660 462920 0 2 261 81 >GrailEXP Gene 7, Var 1 mRNA atgatgactgtggactataactttgggttccagtttctttgcaaaaacaagattgtcccccaagtcctag acaaattgggcagccgtggccttagctacaaaggggaccaagcaagagaaccattcgagagcatcagtgt ggctaaagatcagcaggcccaagtggtagaaggtggccaagagggtactgacccatcaggcagcatgtcc tacctactacctgtgctacagaatcttgtcttctgcttattctctgcactcacacaaaggaactcagtga aaaaagcaaataatgatatgtga >GrailEXP Gene 7, Var 1 protein MMTVDYNFGFQFLCKNKIVPQVLDKLGSRGLSYKGDQAREPFESISVAKDQQAQVVEGGQEGTDPSGSMS YLLPVLQNLVFCLFSALTQRNSVKKANNDM* >GrailEXP Gene 8, Var 1 mRNA atggaggtggtgcccaccctcttggcagagacaaagattccagccactgatgtcgctgatgccagcctga atgaatgttccagtaccgaaaggaaacaagacgtagtgttgctgttcgtgaccttgtcccacacacagcc acctctgtttcacctgccttatgtccagaaacccttaatctctaatgtggagcagctgatcctggggatc ccgggccagaatcgccgggagataggccatggccaggatatctttccagcagagaagctctgccatctgc aggatcgcaaggtgaaccttcacagagctgcctggggcgagtgtattgttgcacccaagactctcagctt ctcttactgtcaggggacctgcccggccctcaacagtgagctccgtcattccagctttgagtgctataag agggcagtacctacctgtccctggctcttccagacctgccgtcccaccatggtcagactcttctccctga tggtccaggatgacgaacacaagatgagtgtgcactatgtgaacacttccttggtggagaagtgtggctg ctcttga >GrailEXP Gene 8, Var 1 protein MEVVPTLLAETKIPATDVADASLNECSSTERKQDVVLLFVTLSHTQPPLFHLPYVQKPLISNVEQLILGI PGQNRREIGHGQDIFPAEKLCHLQDRKVNLHRAAWGECIVAPKTLSFSYCQGTCPALNSELRHSSFECYK RAVPTCPWLFQTCRPTMVRLFSLMVQDDEHKMSVHYVNTSLVEKCGCS* >GrailEXP Gene 9, Var 1 mRNA atgaaagatgaagaccactgcccccactctgctcacccctgcaaggaggaccactcagcccttactcctg tgcttcctgcctttccactcctgccgctgccagcatactgggaaataaggttcaggtgccacttctgtgg actaacaaaagaagggaaactgggtcctacactgcaattgtgggcccccatcccaggtaacagaggagct ctgtga >GrailEXP Gene 9, Var 1 protein MKDEDHCPHSAHPCKEDHSALTPVLPAFPLLPLPAYWEIRFRCHFCGLTKEGKLGPTLQLWAPIPGNRGA L* >GrailEXP Gene 10, Var 1 mRNA atggagcagcagcccttgaactttgctattgaagcatcttccaaggaagtctggctcctcctgtttcata ggacgtgcttccttttggagcagagcacagcctcctactccctgtgtgtcaaacaccttcagctttcctc acctctctgggctatggcaggtgactcctttagttcacgtggaggaaaaaaacatgacattcagtctttg ggtcaaaatgaggactttttgaaaaggacaaatgagctaactttaaactaa >GrailEXP Gene 10, Var 1 protein MEQQPLNFAIEASSKEVWLLLFHRTCFLLEQSTASYSLCVKHLQLSSPLWAMAGDSFSSRGGKKHDIQSL GQNEDFLKRTNELTLN* -------------------------------------------------------------------------------- GALAHAD Gene Alignments (161 located: 72 displayed, 89 redundant) Index Std Begin End Accession Database Organism Length 1 - 16718 66744 BX089473.1 est_human human 765 2 pieces Seq exons = (16718..16765,66600..66744) 100% ident Ref exons = (257..210,209..66) 2 - 61110 61719 AW845646.1 est_human human 612 1 piece Seq exons = (61110..61719) 98% ident Ref exons = (1..611) 3 - 136811 137106 AI553382.1 est_mouse mouse 363 1 piece Seq exons = (136811..137106) 87% ident Ref exons = (4..297) 4 + 206848 207284 AW805200.1 est_human human 525 1 piece Seq exons = (206848..207284) 97% ident Ref exons = (81..519) 5 + 258735 259128 T75404.1 est_human human 447 1 piece Seq exons = (258735..259128) 98% ident Ref exons = (447..45) 6 + 276210 354466 AF042838 baylor_ht human 4693 20 pieces Seq exons = (276210..276633,317178..317328,320293..320493, 325312..325512,325918..326034,326407..326555, 332488..332609,333219..333300,333403..333583, 335610..335888,339558..339679,341289..341380, 341661..341850,342148..343444,344105..344257, 345242..345404,346510..346641,347956..348098, 348804..348935,354109..354466) 99% ident Ref exons = (2..425,426..576,577..777,778..978,979..1095, 1096..1244,1245..1366,1367..1448,1449..1629, 1630..1908,1909..2030,2031..2122,2123..2312, 2313..3615,3616..3768,3769..3931,3932..4063, 4064..4206,4207..4338,4339..4693) 7 + 276271 354262 NM_053887.1 refseq_mrna other 5180 20 pieces Seq exons = (276271..276601,317178..317328,320293..320493, 325312..325512,325918..326034,326407..326555, 332488..332609,333219..333300,333403..333583, 335610..335888,339558..339679,341289..341380, 341661..341850,342148..343444,344105..344257, 345242..345404,346510..346641,347956..348098, 348804..348935,354109..354262) 87% ident Ref exons = (635..965,966..1118,1119..1319,1320..1520,1521..1637, 1638..1786,1787..1908,1909..1990,1991..2174, 2175..2453,2454..2575,2576..2667,2668..2857, 2858..4123,4124..4277,4278..4440,4441..4572, 4573..4715,4716..4847,4848..5001) 8 - 290261 290748 BF894801.1 est_human human 521 1 piece Seq exons = (290261..290748) 99% ident Ref exons = (34..521) 9 + 297390 298007 BF995092.1 est_human human 620 1 piece Seq exons = (297390..298007) 97% ident Ref exons = (620..6) 10 - 302594 320484 AI476562.1 est_human human 524 3 pieces Seq exons = (302594..302791,312568..312652,320247..320484) 100% ident Ref exons = (4..201,202..286,287..524) 11 - 302620 320491 BE782001.1 est_human human 625 3 pieces Seq exons = (302620..302791,312568..312652,320247..320491) 99% ident Ref exons = (595..422,421..337,336..92) 12 - 304259 304570 AW853932.1 est_human human 607 1 piece Seq exons = (304259..304570) 100% ident Ref exons = (5..315) 13 + 317177 317330 BE952672.1 est_mouse mouse 245 1 piece Seq exons = (317177..317330) 87% ident Ref exons = (70..223) 14 + 317177 320447 AW529923.1 est_others rat 412 2 pieces Seq exons = (317177..317328,320293..320447) 87% ident Ref exons = (70..221,222..376) 15 + 317177 326011 BE981914.1 est_mouse mouse 714 4 pieces Seq exons = (317177..317328,320293..320493,325312..325512, 325918..326011) 86% ident Ref exons = (69..220,221..421,422..623,624..714) 16 + 317178 326486 BI654958.1 est_mouse mouse 868 5 pieces Seq exons = (317178..317328,320293..320493,325312..325512, 325918..326037,326407..326486) 87% ident Ref exons = (70..220,221..421,422..622,623..743,742..821) 17 + 317283 356611 AA887977.1 est_human human 394 3 pieces Seq exons = (317283..317328,320293..320434,356448..356611) 97% ident Ref exons = (392..347,346..206,205..49) 18 - 319950 320561 BQ883170.1 est_human human 1000 1 piece Seq exons = (319950..320561) 99% ident Ref exons = (1..612) 19 + 325408 326047 BF565893.1 est_others rat 455 2 pieces Seq exons = (325408..325512,325918..326047) 89% ident Ref exons = (455..351,350..220) 20 + 325960 326557 BE648556.1 est_mouse mouse 443 2 pieces Seq exons = (325960..326034,326407..326557) 89% ident Ref exons = (441..367,366..216) 21 + 333363 335659 BF194017.1 est_others unknown 418 2 pieces Seq exons = (333363..333583,335610..335659) 93% ident Ref exons = (146..367,368..417) 22 + 333491 339599 BQ830084.1 est_mouse mouse 592 3 pieces Seq exons = (333491..333583,335610..335888,339558..339599) 90% ident Ref exons = (170..263,264..542,543..584) 23 + 339566 341381 BE864596.1 est_mouse mouse 258 2 pieces Seq exons = (339566..339679,341289..341381) 90% ident Ref exons = (1..114,115..207) 24 + 339588 342393 AW916314.1 est_others rat 624 4 pieces Seq exons = (339588..339679,341289..341380,341661..341850, 342148..342393) 87% ident Ref exons = (2..93,94..185,186..375,376..621) 25 + 341344 341812 BU296968.1 est_others unknown 690 2 pieces Seq exons = (341344..341380,341661..341812) 89% ident Ref exons = (1..37,38..189) 26 + 341758 341853 BI412816.1 est_mouse mouse 136 1 piece Seq exons = (341758..341853) 93% ident Ref exons = (136..41) 27 + 342461 342929 BI343221.1 est_others unknown 456 1 piece Seq exons = (342461..342929) 88% ident Ref exons = (454..1) 28 + 342501 343301 CA512935.1 est_others rat 799 1 piece Seq exons = (342501..343301) 80% ident Ref exons = (17..799) 29 + 342629 354258 ET61257 tigr_egad mouse 2122 7 pieces Seq exons = (342629..343444,344105..344257,345242..345404, 346510..346641,347956..348098,348804..348935, 354109..354258) 86% ident Ref exons = (427..1224,1225..1377,1378..1540,1541..1672, 1673..1815,1816..1947,1948..2097) 30 + 343015 343453 BQ562623.1 est_mouse mouse 450 1 piece Seq exons = (343015..343453) 85% ident Ref exons = (3..441) 31 + 343082 344232 BU112915.1 est_others unknown 870 2 pieces Seq exons = (343082..343444,344105..344232) 83% ident Ref exons = (221..582,583..709) 32 + 343318 348091 AJ450706.1 est_others unknown 716 5 pieces Seq exons = (343318..343444,344105..344257,345242..345404, 346510..346641,347956..348091) 85% ident Ref exons = (1..127,128..280,281..443,444..575,576..710) 33 + 346508 354267 AJ442678.1 est_others unknown 768 4 pieces Seq exons = (346508..346641,347956..348098,348804..348935, 354109..354267) 88% ident Ref exons = (2..135,136..278,279..410,411..569) 34 + 346532 354541 AU132367.1 est_human human 836 4 pieces Seq exons = (346532..346641,347956..348098,348804..348935, 354109..354541) 99% ident Ref exons = (1..110,111..253,254..385,386..815) 35 + 348012 348935 BF561382.1 est_others rat 392 2 pieces Seq exons = (348012..348098,348804..348935) 88% ident Ref exons = (21..107,108..239) 36 - 354704 355312 AW992954.1 est_human human 608 1 piece Seq exons = (354704..355312) 95% ident Ref exons = (608..1) 37 - 354977 355687 AL133917.1 est_human human 709 1 piece Seq exons = (354977..355687) 96% ident Ref exons = (1..709) 38 - 355075 355707 BF216567.1 est_human human 842 1 piece Seq exons = (355075..355707) 98% ident Ref exons = (1..629) 39 - 355163 355780 BG119132.1 est_human human 766 1 piece Seq exons = (355163..355780) 96% ident Ref exons = (1..625) 40 + 369838 371990 BG719045.1 est_human human 732 2 pieces Seq exons = (369838..370321,371747..371990) 98% ident Ref exons = (6..489,490..732) 41 + 369838 375517 BI464695.1 est_human human 912 5 pieces Seq exons = (369838..370038,371887..372114,373589..373712, 374452..374567,375439..375517) 97% ident Ref exons = (6..207,208..435,436..560,561..676,677..754) 42 + 369854 377763 BC036528.1 mgc_human human 1591 6 pieces Seq exons = (369854..370321,371747..372114,373589..373712, 374452..374567,375439..375544,377393..377763) 99% ident Ref exons = (4..471,472..839,840..963,964..1079,1080..1185, 1186..1556) 43 + 370205 377583 BG703195.1 est_human human 658 5 pieces Seq exons = (370205..370321,373589..373712,374452..374567, 375439..375544,377393..377583) 99% ident Ref exons = (6..122,123..245,246..361,362..467,468..657) 44 + 370219 373691 AV590481.1 est_others unknown 567 3 pieces Seq exons = (370219..370321,371747..372080,373589..373691) 93% ident Ref exons = (23..125,126..459,460..562) 45 + 370222 373632 BE031755.1 est_others unknown 520 3 pieces Seq exons = (370222..370321,371747..372114,373589..373632) 89% ident Ref exons = (9..108,109..476,477..520) 46 + 370638 374567 AI525851.1 est_human human 903 3 pieces Seq exons = (370638..370972,373589..373712,374452..374567) 98% ident Ref exons = (19..353,354..477,478..596) 47 + 370665 374555 BE567519.1 est_human human 612 4 pieces Seq exons = (370665..370972,371620..371689,373589..373712, 374452..374555) 97% ident Ref exons = (1..309,310..379,380..503,504..612) 48 + 370683 371873 AI208292.1 est_human human 429 2 pieces Seq exons = (370683..370972,371747..371873) 99% ident Ref exons = (429..140,139..13) 49 + 370689 375544 BF132789.1 est_human human 874 4 pieces Seq exons = (370689..370972,373589..373712,374452..374567, 375439..375544) 97% ident Ref exons = (1..282,283..407,408..524,525..625) 50 + 370882 377429 BQ215963.1 est_human human 981 5 pieces Seq exons = (370882..370972,373589..373712,374452..374567, 375439..375544,377393..377429) 99% ident Ref exons = (76..166,167..290,291..406,407..514,515..552) 51 + 371501 371873 AI041277.1 est_human human 389 1 piece Seq exons = (371501..371873) 100% ident Ref exons = (378..6) 52 + 371667 375524 AI685269.1 est_human human 349 4 pieces Seq exons = (371667..371689,373589..373712,374452..374567, 375439..375524) 99% ident Ref exons = (349..327,326..203,202..87,86..1) 53 + 371899 374562 BE869153.1 est_human human 470 3 pieces Seq exons = (371899..372114,373589..373721,374452..374562) 97% ident Ref exons = (1..220,221..353,354..470) 54 + 374450 377541 BF442263.1 est_others unknown 489 3 pieces Seq exons = (374450..374567,375439..375544,377393..377541) 92% ident Ref exons = (24..141,142..247,248..394) 55 + 374452 375002 AA404649.1 est_human human 569 1 piece Seq exons = (374452..375002) 99% ident Ref exons = (8..557) 56 + 377391 377756 AA912135.1 est_human human 372 1 piece Seq exons = (377391..377756) 100% ident Ref exons = (371..6) 57 + 377397 377769 AI989350.1 est_human human 373 1 piece Seq exons = (377397..377769) 100% ident Ref exons = (373..1) 58 - 381225 411232 BC041348.1 mgc_human human 4197 12 pieces Seq exons = (381225..384163,384269..384411,384493..384620, 389345..389436,391242..391323,393825..393976, 396006..396078,396244..396329,398156..398276, 399461..399595,407504..407649,411206..411232) 99% ident Ref exons = (4161..1223,1222..1080,1079..952,951..860,859..778, 777..626,625..553,552..467,466..346,345..211, 210..65,64..38) 59 - 382707 407653 AK083929 riken_cdna mouse 3761 11 pieces Seq exons = (382707..384163,384269..384411,384493..384620, 389345..389439,391242..391323,393825..393976, 396006..396078,396244..396329,398156..398276, 399461..399595,407504..407653) 87% ident Ref exons = (2670..1206,1205..1063,1062..935,934..842,841..758, 757..604,603..530,529..444,443..323,322..188, 187..38) 60 - 382707 407653 AK030747 riken_cdna mouse 4244 11 pieces Seq exons = (382707..384163,384269..384411,384493..384620, 389345..389436,391242..391323,393825..393976, 396006..396078,396244..396329,398156..398276, 399461..399595,407504..407653) 87% ident Ref exons = (2756..1292,1291..1149,1148..1021,1020..929, 928..847,846..693,692..619,618..533,532..412, 411..277,276..127) 61 + 383227 383669 BU423049.1 est_others unknown 890 2 pieces Seq exons = (383227..383388,383456..383669) 84% ident Ref exons = (534..376,375..164) 62 - 384505 389434 BU449629.1 est_others unknown 846 2 pieces Seq exons = (384505..384620,389345..389434) 86% ident Ref exons = (600..486,485..396) 63 - 388953 389414 BX092730.1 est_human human 786 1 piece Seq exons = (388953..389414) 99% ident Ref exons = (325..786) 64 - 388953 389444 BU740545.1 est_human human 697 1 piece Seq exons = (388953..389444) 99% ident Ref exons = (545..50) 65 - 391280 411232 BB662605.1 est_mouse mouse 673 7 pieces Seq exons = (391280..391323,393825..393976,396006..396078, 396244..396329,398156..398276,399461..399595, 411206..411232) 88% ident Ref exons = (661..618,617..464,463..390,389..304,303..183, 182..48,47..21) 66 - 398188 407654 BM440726.1 est_others unknown 570 3 pieces Seq exons = (398188..398276,399461..399595,407504..407654) 84% ident Ref exons = (404..316,315..181,180..30) 67 - 398215 399511 AL635947.1 est_others unknown 667 2 pieces Seq exons = (398215..398276,399461..399511) 88% ident Ref exons = (585..524,523..473) 68 - 398215 399511 AL862590.1 est_others unknown 837 2 pieces Seq exons = (398215..398276,399461..399511) 88% ident Ref exons = (486..425,424..374) 69 - 399091 399587 AW300319.1 est_human human 497 1 piece Seq exons = (399091..399587) 99% ident Ref exons = (1..497) 70 - 399471 407635 BU312149.1 est_others unknown 980 2 pieces Seq exons = (399471..399595,407504..407635) 83% ident Ref exons = (293..167,166..35) 71 - 399471 407654 BU386999.1 est_others unknown 774 2 pieces Seq exons = (399471..399595,407504..407654) 83% ident Ref exons = (630..506,505..353) 72 + 407569 407959 AA909014.1 est_human human 380 2 pieces Seq exons = (407569..407730,407955..407959) 100% ident Ref exons = (167..6,5..1) -------------------------------------------------------------------------------- PERCEVAL Exon Candidates (134 predicted) Index Std Begin End Frm Type Len Scr Quality 1 - 4326 4426 0 Internal 101 60 Marginal 2 + 7216 7278 0 Terminal 63 57 Marginal 3 + 12161 12280 0 Single 120 68 Marginal 4 + 12744 12764 0 Initial 21 55 Marginal 5 + 13515 13620 0 Internal 106 86 Good 6 + 14346 14495 0 Terminal 150 45 Marginal 7 + 18184 18291 1 Internal 108 77 Good 8 - 19513 19607 0 Initial 95 61 Marginal 9 - 20742 21014 0 Terminal 273 67 Marginal 10 + 23840 24050 2 Internal 211 55 Marginal 11 + 25360 25470 0 Initial 111 84 Good 12 - 40854 41046 2 Terminal 193 76 Good 13 - 41737 41924 1 Terminal 188 47 Marginal 14 - 46784 46890 0 Internal 107 81 Good 15 - 50374 50510 0 Internal 137 76 Good 16 - 52055 52156 0 Initial 102 61 Marginal 17 - 61009 61180 0 Initial 172 74 Good 18 - 62311 62491 2 Terminal 181 56 Marginal 19 - 66516 66684 0 Initial 169 72 Good 20 - 72995 73123 1 Internal 129 76 Good 21 - 74954 74994 1 Terminal 41 95 Excellent 22 - 83201 83352 1 Terminal 152 79 Good 23 - 84471 84586 2 Internal 116 61 Marginal 24 + 95274 95418 1 Internal 145 100 Excellent 25 + 98199 98278 0 Initial 80 40 Poor 26 + 101484 101615 0 Single 132 47 Marginal 27 + 108232 108316 1 Internal 85 86 Good 28 + 109015 109131 0 Single 117 48 Marginal 29 + 112310 112466 0 Initial 157 67 Marginal 30 - 115704 115806 2 Terminal 103 80 Good 31 - 120858 120956 2 Internal 99 50 Marginal 32 - 121180 121221 0 Terminal 42 69 Marginal 33 - 124394 124534 0 Initial 141 67 Marginal 34 + 129456 129569 0 Terminal 114 93 Excellent 35 + 130182 130407 0 Initial 226 60 Marginal 36 - 136899 137044 0 Initial 146 63 Marginal 37 + 141497 141607 0 Single 111 57 Marginal 38 + 141951 142096 0 Initial 146 60 Marginal 39 + 143703 143854 1 Internal 152 66 Marginal 40 + 149221 149391 0 Single 171 52 Marginal 41 + 149777 149927 0 Internal 151 74 Good 42 + 150878 151077 1 Terminal 200 57 Marginal 43 + 151444 151534 0 Internal 91 72 Good 44 + 152879 152947 0 Terminal 69 62 Marginal 45 - 155818 156025 2 Internal 208 54 Marginal 46 - 160415 160497 1 Internal 83 96 Excellent 47 - 161596 161727 0 Initial 132 58 Marginal 48 - 166163 166303 0 Initial 141 75 Good 49 - 175843 175954 0 Internal 112 77 Good 50 + 179809 180033 0 Terminal 225 51 Marginal 51 - 192965 193024 0 Terminal 60 48 Marginal 52 - 194176 194273 1 Terminal 98 57 Marginal 53 - 196523 196575 0 Initial 53 53 Marginal 54 - 196930 197085 0 Single 156 55 Marginal 55 + 200243 200336 2 Internal 94 91 Excellent 56 + 206926 206970 0 Terminal 45 72 Good 57 - 209470 209574 0 Initial 105 70 Good 58 + 212456 212557 1 Internal 102 65 Marginal 59 - 216554 216598 0 Initial 45 55 Marginal 60 + 222293 222370 0 Terminal 78 51 Marginal 61 - 224703 224788 2 Internal 86 56 Marginal 62 + 228342 228462 2 Terminal 121 64 Marginal 63 - 231584 231730 0 Terminal 147 58 Marginal 64 - 232083 232502 0 Initial 420 72 Good 65 + 253344 253450 1 Internal 107 54 Marginal 66 + 253547 253654 0 Single 108 71 Good 67 + 255976 256113 0 Terminal 138 90 Excellent 68 + 258835 258880 2 Terminal 46 59 Marginal 69 - 265198 265355 1 Terminal 158 86 Good 70 - 267061 267126 2 Internal 66 58 Marginal 71 + 271735 271853 0 Initial 119 94 Excellent 72 + 273485 273608 1 Internal 124 80 Good 73 + 275080 275311 2 Internal 232 77 Good 74 + 276122 276633 0 Internal 512 73 Good 75 + 279147 279175 2 Internal 29 91 Excellent 76 - 290260 290377 0 Internal 118 83 Good 77 + 297757 297889 0 Internal 133 69 Marginal 78 - 303811 303914 0 Internal 104 92 Excellent 79 - 304475 304562 0 Initial 88 63 Marginal 80 - 312568 312652 0 Internal 85 79 Good 81 + 317178 317328 2 Internal 151 100 Excellent 82 - 320312 320491 0 Terminal 180 67 Marginal 83 + 325411 325512 0 Initial 102 71 Good 84 + 325918 326033 1 Terminal 116 59 Marginal 85 + 332488 332601 2 Internal 114 98 Excellent 86 + 332841 332948 0 Initial 108 80 Good 87 + 333219 333254 0 Terminal 36 68 Marginal 88 + 333403 333583 2 Internal 181 100 Excellent 89 + 335667 335888 0 Initial 222 86 Good 90 + 339558 339679 0 Internal 122 100 Excellent 91 + 340195 340244 1 Terminal 50 61 Marginal 92 + 341289 341445 2 Terminal 157 62 Marginal 93 + 341661 341854 1 Terminal 194 68 Marginal 94 + 343019 343444 0 Initial 426 83 Good 95 + 345242 345404 0 Internal 163 80 Good 96 + 346510 346641 1 Internal 132 100 Excellent 97 + 347956 348186 1 Internal 231 71 Good 98 - 355268 355313 0 Initial 46 48 Marginal 99 - 359797 359958 0 Single 162 54 Marginal 100 - 362242 362397 1 Internal 156 79 Good 101 + 370224 370321 0 Initial 98 83 Good 102 + 371747 372114 2 Internal 368 83 Good 103 + 373589 373716 1 Terminal 128 100 Excellent 104 + 374452 374567 2 Internal 116 88 Good 105 + 375420 375544 0 Initial 125 80 Good 106 + 377393 377480 2 Terminal 88 80 Good 107 - 379149 379263 2 Internal 115 61 Marginal 108 - 383706 384150 2 Terminal 445 91 Excellent 109 - 384493 384620 0 Internal 128 87 Good 110 - 389345 389439 1 Internal 95 97 Excellent 111 - 390871 390904 2 Terminal 34 49 Marginal 112 - 391242 391323 0 Internal 82 100 Excellent 113 - 396006 396078 0 Internal 73 100 Excellent 114 - 398112 398276 0 Internal 165 96 Excellent 115 - 399461 399586 0 Initial 126 87 Good 116 + 403751 403875 0 Initial 125 78 Good 117 + 404099 404240 2 Internal 142 89 Good 118 - 407498 407649 1 Terminal 152 100 Excellent 119 - 413649 413819 0 Initial 171 60 Marginal 120 - 419964 420064 0 Internal 101 67 Marginal 121 + 425279 425420 2 Internal 142 81 Good 122 - 432211 432324 0 Internal 114 73 Good 123 - 434546 434582 0 Initial 37 46 Marginal 124 + 437763 437891 0 Single 129 59 Marginal 125 + 438378 438514 0 Internal 137 81 Good 126 + 454755 454870 0 Initial 116 81 Good 127 + 456025 456150 2 Internal 126 66 Marginal 128 + 462659 462819 2 Internal 161 84 Good 129 + 469107 469220 0 Internal 114 69 Marginal 130 + 472240 472513 0 Initial 274 45 Marginal 131 + 487209 487356 2 Terminal 148 85 Good 132 + 490921 491003 0 Initial 83 78 Good 133 - 492187 492303 0 Initial 117 55 Marginal 134 - 494100 494202 0 Initial 103 80 Good -------------------------------------------------------------------------------- # Output_end: pretty gc_object_end: gene_grailexp --organism human --output pretty --matchorg human --dbpat grailexp_v3