GENSCAN 1.0 Date run: 10-Mar-104 Time: 18:10:22 Sequence ref : 500000 bp : 39.24% C+G : Isochore 1 ( 0 - 43 C+G%) Parameter matrix: HumanIso.smat Predicted genes/exons: Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr.. ----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------ 1.01 Init + 12744 12764 21 2 0 82 91 42 0.430 1.77 1.02 Term + 13515 13637 123 2 0 79 38 132 0.654 4.70 1.03 PlyA + 14848 14853 6 1.05 2.00 Prom + 21533 21572 40 -7.05 2.01 Init + 23958 24050 93 2 0 77 36 73 0.391 1.43 2.02 Intr + 27154 27252 99 0 0 64 80 87 0.678 4.89 2.03 Intr + 40693 40786 94 0 1 12 116 82 0.635 2.02 2.04 Intr + 46826 46976 151 0 1 81 49 157 0.541 9.40 2.05 Intr + 56750 56796 47 2 2 41 106 62 0.113 0.43 2.06 Intr + 68034 68282 249 1 0 53 72 190 0.104 10.39 2.07 Intr + 95274 95418 145 1 1 21 110 64 0.143 0.32 2.08 Intr + 99388 99518 131 1 2 97 76 46 0.350 3.72 2.09 Intr + 130201 130407 207 2 0 69 41 144 0.006 5.93 2.10 Term + 140590 140726 137 2 2 136 38 48 0.513 1.80 2.11 PlyA + 143135 143140 6 1.05 3.00 Prom + 143867 143906 40 -5.25 3.01 Init + 149221 149371 151 0 1 38 61 148 0.747 7.35 3.02 Intr + 150878 150958 81 0 0 39 46 132 0.073 2.79 3.03 Intr + 178288 178451 164 2 2 30 7 212 0.595 6.07 3.04 Intr + 179809 179961 153 0 0 94 1 149 0.692 6.15 3.05 Intr + 189413 189491 79 1 1 48 78 79 0.046 1.11 3.06 Intr + 194138 194221 84 0 0 83 67 41 0.007 0.37 3.07 Term + 217761 217894 134 1 2 115 54 56 0.410 2.17 3.08 PlyA + 230285 230290 6 1.05 4.04 PlyA - 230867 230862 6 1.05 4.03 Term - 231730 231584 147 1 0 92 50 148 0.652 8.32 4.02 Intr - 232550 232083 468 2 0 59 116 219 0.647 14.17 4.01 Init - 233374 233351 24 1 0 100 106 -11 0.653 1.48 4.00 Prom - 261562 261523 40 -5.75 5.00 Prom + 262653 262692 40 -5.35 5.01 Init + 275016 275138 123 2 0 96 23 107 0.392 5.52 5.02 Intr + 276122 276633 512 1 2 136 88 294 0.355 25.04 5.03 Intr + 287051 287183 133 2 1 31 69 71 0.135 -0.77 5.04 Intr + 287413 287531 119 0 2 38 74 106 0.097 2.54 5.05 Intr + 317178 317328 151 0 1 65 103 146 0.006 13.04 5.06 Intr + 320293 320493 201 0 0 27 95 127 0.906 5.86 5.07 Intr + 325318 325512 195 0 0 -7 91 159 0.935 5.39 5.08 Intr + 326407 326555 149 0 2 62 92 53 0.982 1.21 5.09 Intr + 333445 333583 139 1 1 86 111 108 0.766 12.45 5.10 Intr + 335610 335888 279 2 0 58 83 218 0.997 15.05 5.11 Intr + 339558 339679 122 2 2 76 82 107 0.997 7.27 5.12 Intr + 341289 341380 92 0 2 82 50 91 0.999 3.42 5.13 Intr + 341661 341850 190 1 1 103 91 110 0.999 10.52 5.14 Intr + 342148 342583 436 1 1 93 2 298 0.367 14.36 5.15 Intr + 342845 343444 600 1 0 51 95 578 0.360 46.58 5.16 Intr + 344105 344257 153 1 0 48 99 139 0.998 10.35 5.17 Intr + 345242 345404 163 1 1 44 91 127 0.996 7.23 5.18 Intr + 346510 346641 132 2 0 98 100 68 0.997 8.70 5.19 Intr + 347956 348098 143 2 2 83 78 126 0.985 10.25 5.20 Intr + 348804 348935 132 2 0 51 86 74 0.891 3.42 5.21 Term + 354109 354258 150 0 0 94 42 87 0.768 1.63 5.22 PlyA + 365812 365817 6 1.05 6.00 Prom + 366219 366258 40 -6.35 6.01 Init + 370224 370321 98 2 2 99 78 101 0.906 10.03 6.02 Intr + 371747 372114 368 2 2 63 52 255 0.894 13.26 6.03 Intr + 373589 373712 124 0 1 92 111 1 0.984 1.52 6.04 Intr + 374452 374567 116 1 2 80 95 71 0.962 6.17 6.05 Intr + 375439 375544 106 2 1 77 83 81 0.962 4.85 6.06 Term + 377393 377480 88 2 1 113 35 78 0.914 1.15 6.07 PlyA + 382934 382939 6 1.05 7.19 PlyA - 383193 383188 6 1.05 7.18 Term - 384163 383706 458 2 2 92 43 375 0.999 27.70 7.17 Intr - 384411 384269 143 2 2 74 98 129 0.999 11.58 7.16 Intr - 384620 384493 128 2 2 51 102 62 0.994 2.46 7.15 Intr - 389439 389345 95 1 2 9 94 80 0.809 -0.54 7.14 Intr - 391323 391242 82 0 1 45 116 77 0.881 4.49 7.13 Intr - 393976 393825 152 2 2 40 74 100 0.951 2.76 7.12 Intr - 396078 396006 73 0 1 91 116 73 0.997 8.46 7.11 Intr - 396329 396244 86 0 2 59 121 91 0.999 8.12 7.10 Intr - 398276 398156 121 2 1 101 58 130 0.943 10.45 7.09 Intr - 399667 399461 207 1 0 54 106 208 0.885 17.55 7.08 Intr - 404465 404412 54 2 0 49 59 87 0.495 0.16 7.07 Intr - 407649 407504 146 1 2 73 70 235 0.949 19.28 7.06 Intr - 411230 411166 65 1 2 136 30 27 0.110 -0.86 7.05 Intr - 420064 419964 101 1 2 3 105 123 0.528 3.49 7.04 Intr - 421694 421615 80 0 2 82 47 64 0.176 0.05 7.03 Intr - 436382 436260 123 0 0 70 115 94 0.643 9.94 7.02 Intr - 463252 463191 62 0 2 55 30 112 0.009 -0.44 7.01 Intr - 463391 463296 96 1 0 78 76 77 0.030 3.71 Predicted peptide sequence(s): >ref|GENSCAN_predicted_peptide_1|47_aa MLTKGGVECGDLNHQPSGELGLEHLQAKPTATELAGTSCCCDCGRLL >ref|GENSCAN_predicted_peptide_2|450_aa MDLEKLGVCFLEADEYSNDRQWYFLSLYMNQNKTESQSSNWRIDSQSRVRQVIMTTAIPM IKAQPWSRPKPSNPAIFGLQNKRASLFPRFTCEDQGQQLLGVAQSEISNTTFVAVHILNV EHCVLNGISEASSPEEYPTSENTEKGDTEEESSWRESTSIMDATFKTKSQEQDVLPAPRS TMHLKSVLICRNEQLINSLCEVLRLNKCAPLLLPLPQAATLHVPAFERQLRNEAKRDISS FPNPVFKTKHGAAGEIPNTFKPSKAANHKNASHFIFNKFVLYQAYKRNTTVHRDAQIPSS PLFPDLLSKLLPLVHCETSKQTKTLGHEPQTGFPWKGHLPMGLHLPAGSKSAPAALVPSG CAHIINKGTSSANWLHDMDTCPLSIGLELGDFHKGQPTAGRQEPPAPLPHRQPSTSLNSV DPNWTDTRTIQTSLYTRIPPLRPCLDSMSA >ref|GENSCAN_predicted_peptide_3|281_aa MVGALQESSGTTSRVLSKQQDQSMSDDHDPGSRQTPEHHQQKMREADNVEGDQAREPFES ISVAKDQQAQVVEGGQEGVPGKARRANSSSTPTQLRKADRTAAQKAACTVSNPETNAPLQ CNANRTPSPGVNLASSRNEDSRGETWKTQKAELGKEGSREICLLLGALLVSVSFWTLFSE HLRSHQQPTPMCPFSQIYPKQNNMPNERRALMPRPSLVLNVHLIQHPSLQTRAIFTPWLS LHSPHPPGWHLCPGCGLAPEVWTGQGQPELNLKEQESSVFA >ref|GENSCAN_predicted_peptide_4|212_aa MVLPSYSKSEGGSLLDIYCLLTYWMEVVPTLLAETKIPATDVADASLNECSSTERKQDVV LLFVTLSHTQPPLFHLPYVQKPLISNVEQLILGIPGQNRREIGHGQDIFPAEKLCHLQDR KVNLHRAAWGECIVAPKTLSFSYCQGTCPALNSELRHSSFECYKRAVPTCPWLFQTCRPT MVRLFSLMVQDDEHKMSVHYVNTSLVEKCGCS >ref|GENSCAN_predicted_peptide_5|1437_aa MGSQALQEWGQREPGRWPDPAGKKDVRREASDSGRAGTWPRGPSECSPREKMAAAAGNRA SSSGFPGARATSPEAGGGGGALKASSAPAAAAGLLREAGSGGRERADWRRRQLRKVRSVE LDQLPEQPLFLAASPPASSTSPSPEPADAAGSGTGFQPVAVPPPHGAASRGGAHLTESVA APDSGASSPAAAEPGEKRAPAAEPSPAAAPAGSEMWSQGKNVAANLHITVLENNPRPSQV RQQMCSDTSSRELDDDKHSELPARHQGAGDTAGGKSPSLACGGAYLMTDSAGPRPLREME NKETLKGLHKMDDRPEERMIREKLKATCMPAWKHEWLERRNRRGPVVVKPIPVKGDGSEM NHLAAESPGEVQASAASPASKGRRSPSPGNSPSGRTVKSESPGVRRKRVSPVPSGRITPP RRAPSPDGFSPYSPEETNRRVNKVMRARLYLLQQIGPNSFLIGGDSPDNKYRVFIGPQVE SLFQKYHSRRSSRIKAPSRNTIQKFVSRMSNSHTLSSSSTSTSSSENRAAQQQTVQQQPL AGSRRNQESNFNLTHYGTQQIPPAYKDLAEPWIQVFGMELVGCLFSRNWNVREMALRRLS HDVSGALLLANGESTGNSGGSSGSSPSGGATSGSSQTSISGDVVEACCSVLSMVCADPVY KVYVAALKTLRAMLVYTPCHSLAERIKLQRLLQPVVDTILVKCADANSRTSQLSISTLLE LCKGQAGELAVGREILKAGSIGIGGVDYVLNCILGNQTESNNWQELLGRLCLIDRLLLEF PAEFYPHIVSTDVSQAEPVEIRYKKLLSLLTFALQSIDNSHSMVGKLSRRIYLSSARMVT TVPHVFSKLLEMLSVSSSTHFTRMRRRLMAIADEVEIAEAIQLGVEDTLDGQQDSFLQAS VPNNYLETTENSSPECTVHLEKTGKGLCATKLSASSEDISERLASISRKFSLQFHRNCPE NKDSDKLSPVFTQSRPLPSSNIHRPKPSRPTPGNTSKQGDPSKNSMTLDLNSSSKCDDSF GCSSNSSNAVIPSDETVFTPVEEKCRLDVNTELNSSIEDLLEASMPSSDTTVTFKSEVAV LSPEKAENDDTYKDDVNHNQKCKEKMEAEEEEALAIAMAMSASQDALPIVPQLQVENGED IIIIQQDTPETLPGHTKAKQPYREDTEWLKGQQIGLGAFSSCYQAQDVGTGTLMAVKQVT YVRNTSSEQEEVVEALREEIRMMSHLNHPNIIRMLGATCEKSNYNLFIEWMAGGSVAHLL SKYGAFKESVVINYTEQLLRGLSYLHENQIIHRDVKGANLLIDSTGQRLRIADFGAAARL ASKGTGAGEFQGQLLGTIAFMAPEVLRGQQYGRSCDVWSVGCAIIEMACAKPPWNAEKHS NHLALIFKIASATTAPSIPSHLSPGLRDVALRCLELQPQDRPPSRELLKHPVFRTTW >ref|GENSCAN_predicted_peptide_6|299_aa MPGRLLRGLWQRWRRYKYRFVPWIALNLSHNPRTLRYVPEESKDKVISDEDVLGTLLKVF QALFLNDFNKQSEILSMLPESVKSKYQDLLAVEHQGVKLLENRHQQQSTFKPEEILYKTL GFSVAQATSSLISAGKGVFVTKGLVPKGAVVSMYPGTVYQKYEPIFFQSIGNPFIFRCLD GVLIDGNDKGISKVVYRSCNGRDRLGPLKMSDSTWLTSEIHNPLAVGQYVNNCSNDRAAN VCYQEFDVPAVFPIELKQYLPNIAYSYDKQSPLRCVVLVALRDINQGEELFSNYYTIVS >ref|GENSCAN_predicted_peptide_7|757_aa XFQQSWHYEPAKTIWEASSCPLKVFILPVWYQRYSKKAVTLSLAVNLHPKTGMFNLPAET REMMLSVLFNRFPGFKKVRFVPGKHGIALVEFENERFFRRIGLFLYNFDIIILERNPPSG GEKPNKSTEDSSLPSHAKPGAYPLNGMENRGTGIPLLLEVRAQVCPIFLRLRWFPVVGSL SSEDHDFDPTAEMLVHDYDDERTLEEEEMMDEGKNFSSEIEDLEKVQQNTQEEEEKNPYT RDKDSTVYLQFSIVTSAESVFMPWLEQEGTMPLEDLLAFYGYEPTIPAVANSSANSSPSE LADELPDMTLDKEEIAKDLLSGDDEETQSSADDLTPSVTSHETSDFFPRPLRSNTACDGD KESEVEDVETDSGNSPEDLRKEIMIGLQYQAEIPPYLGEYDGNEKVYENEDQLLWCPDVV LESKVKEYLVETSLRTGSEKIMDRISAGTHTRDNEQALYELLKCNHNIKEAIERYCCNGK ASQEGMTAWTEEECRSFEHALMLFGKDFHLIQKNKVRTRTVAECVAFYYMWKKSERYDYF AQQTRFGKKRYNHHPGVTDYMDRLVDETEALGGTVNASALTSNRPEPIPDQQLNILNSFT ASDLTALTNSVATVCDPTDVNCLDDSFPPLGNTPRGQVNHVPVVTEELLTLPSNGESDCF NLFETGFYHSELNPMNMCSEESERPAKRLKMGIAVPESFMNEVSVNNLGVDFENHTHHIT SAKMAVSVADFGSLSANETNGFISAHALHQHAALHSE