RPS-BLAST 2.2.8 [Jan-05-2004]
Query= local sequence: ref|GENSCAN_predicted_peptide_4|391_aa
(391 letters)
Database: cdd.v1.65
18,039 PSSMs; 5,506,404 total columns
| PSSMs producing significant alignments: |
Score
(bits) |
E
value |
| |
| gnl|CDD|1983 |
pfam01442, Apolipoprotein, Apolipoprotein A1/A4/E family. Thes... |
74.9 |
3e-14 |
gnl|CDD|1983,
pfam01442, Apolipoprotein, Apolipoprotein A1/A4/E family. These
proteins contain several 22 residue repeats which form a pair of alpha
helices. This family includes: Apolipoprotein A-I. Apolipoprotein A-IV.
Apolipoprotein E. CD-Length = 262 residues, only 77.1% aligned
Score = 74.9 bits (184), Expect = 3e-14
Query: 78 SRTLKDSLEQDLNNMNKFLEKLR----PLSGSEAPRLPQDPVGMRRQLQEELEEVKARLQ 133
Sbjct: 60 TQELNLLLQDNLDELKSYAEELQEQLGPVAQEFWARLSKETQALRAELGKDLEDVRNRLA 119
Query: 134 PYMAEAHELVGWNLEGLRQQLKPYTMDLMEQVALRVQELQEQLRVVGEDTKAQLLGGVDE 193
Sbjct: 120 PYRDELQQMLGQNIEEYRQKLEPLARELRKRLRRDAEELQKRLAPYAEELRERAERNVDA 179
Query: 194 A----WALLQGLQSRVVHHTGRFKELFHPYAESLVSGIGRHVQELHRSVAPHAPASPARL 249
Sbjct: 180 LRTRLGPYVEQLRQKLTQRLEELRERAQPYAEEYKEQLEEQLSELREKLAPLREDLQEVL 239
Query: 250 SRCVQVLSRKLTLKAKALHARIQQNL 275
Sbjct: 240 NPVLE----QLKTQAEAFQEELKSWL 261
Citing CD-Search:
Marchler-Bauer A, Anderson JB, DeWeese-Scott C, Fedorova ND, Geer LY, He S, Hurwitz DI, Jackson JD, Jacobs AR,
Lanczycki CJ, Liebert CA, Liu C, Madej T, Marchler GH, Mazumder R, Nikolskaya AN, Panchenko AR, Rao BS, Shoemaker BA,
Simonyan V, Song JS, Thiessen RA, Vasudevan S, Wang Y, Yamashita RA, Yin JJ, and Bryant SH (2003),
"CDD: a curated Entrez database of conserved domain alignments",
Nucleic Acids Res. 31:383-387.
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