FGENES 1.6 Prediction of multiple genes in genomic DNA
Time: 15:04:31 Date: Tue Mar 2 2004
Seq name:
Length of sequence: 500030 GC content: 0.44 Zone: 2
Number of predicted genes: 7 In +chain: 4 In -chain: 3
Number of predicted exons: 57 In +chain: 41 In -chain: 16
Positions of predicted genes and exons:
G Str Feature Start End Weight ORF-start ORF-end

1 - PolA 17168 4.11
1 - 1 CDSl 18040 - 18196 1.76 18043 - 18195
1 - 2 CDSi 18717 - 18889 2.42 18719 - 18889
1 - 3 CDSi 19860 - 19925 1.00 19860 - 19925
1 - 4 CDSi 23280 - 23372 3.17 23280 - 23372
1 - 5 CDSi 23512 - 23574 0.63 23512 - 23574
1 - 6 CDSi 38140 - 38324 2.11 38140 - 38322
1 - 7 CDSi 47631 - 47764 2.24 47632 - 47763
1 - 8 CDSi 48331 - 48452 1.28 48333 - 48452
1 - 9 CDSi 58468 - 58559 2.89 58468 - 58557
1 - 10 CDSi 64460 - 64518 2.87 64461 - 64517
1 - 11 CDSf 84562 - 84632 3.15 84564 - 84632

2 - PolA 115177 5.51
2 - 1 CDSl 117053 - 117133 2.16 117056 - 117133
2 - 2 CDSf 136912 - 137028 4.77 136912 - 137028

3 + 1 CDSf 155409 - 155492 3.86 155409 - 155492
3 + 2 CDSi 202613 - 202629 0.58 202613 - 202627
3 + 3 CDSi 211239 - 211515 2.96 211240 - 211515
3 + 4 CDSi 216877 - 216928 0.79 216877 - 216927
3 + 5 CDSi 237241 - 237609 2.47 237243 - 237608
3 + 6 CDSi 240229 - 240328 1.36 240231 - 240326
3 + 7 CDSi 242848 - 242926 1.80 242849 - 242926
3 + 8 CDSi 244341 - 244383 1.52 244341 - 244382
3 + 9 CDSi 252103 - 252303 3.26 252105 - 252302
3 + 10 CDSl 258598 - 258791 3.74 258600 - 258788
3 + PolA 259223 0.80

4 - PolA 274767 6.60
4 - 1 CDSl 274813 - 275013 2.63 274816 - 275013
4 - 2 CDSi 281931 - 281984 1.28 281931 - 281984
4 - 3 CDSf 294973 - 294987 3.09 294973 - 294987

5 + 1 CDSf 311693 - 311898 5.46 311693 - 311896
5 + 2 CDSi 313015 - 313124 0.48 313016 - 313123
5 + 3 CDSi 313645 - 313716 1.94 313647 - 313715
5 + 4 CDSi 335291 - 335320 0.61 335293 - 335319
5 + 5 CDSi 374215 - 374281 1.10 374217 - 374279
5 + 6 CDSi 377450 - 377528 3.29 377451 - 377528
5 + 7 CDSi 382571 - 382735 5.12 382571 - 382735
5 + 8 CDSi 389137 - 389233 2.50 389137 - 389232
5 + 9 CDSl 392337 - 392398 1.66 392339 - 392395
5 + PolA 393219 6.90

6 + 1 CDSf 396798 - 396978 6.69 396798 - 396977
6 + 2 CDSi 398964 - 399115 3.13 398966 - 399115
6 + 3 CDSi 400615 - 400688 2.19 400615 - 400686
6 + 4 CDSi 401796 - 401919 2.50 401797 - 401919
6 + 5 CDSi 402731 - 402829 2.15 402731 - 402829
6 + 6 CDSi 412834 - 412951 3.59 412834 - 412950
6 + 7 CDSi 414522 - 414604 1.89 414524 - 414604
6 + 8 CDSi 414726 - 414815 3.73 414726 - 414815
6 + 9 CDSi 415458 - 415661 2.79 415458 - 415661
6 + 10 CDSi 417486 - 417518 1.51 417486 - 417518
6 + 11 CDSi 417966 - 418046 1.18 417966 - 418046
6 + 12 CDSi 420153 - 420266 1.12 420153 - 420266
6 + 13 CDSi 422759 - 422933 3.24 422759 - 422932
6 + 14 CDSi 427942 - 428081 3.24 427944 - 428081
6 + 15 CDSi 429567 - 429668 3.57 429567 - 429668
6 + 16 CDSl 432990 - 433142 3.33 432990 - 433139
6 + PolA 435597 3.39

7 + 1 CDSf 438272 - 438380 6.29 438272 - 438379
7 + 2 CDSi 442185 - 442374 2.58 442187 - 442372
7 + 3 CDSi 445628 - 445754 3.98 445629 - 445754
7 + 4 CDSi 446982 - 447059 1.57 446982 - 447059
7 + 5 CDSi 451565 - 451588 0.93 451565 - 451588
7 + 6 CDSi 452845 - 452874 1.33 452845 - 452874

Predicted proteins:
>FGENES 1.5 1 Multiexon gene 18040 - 84632 404 a Ch-
MAAAAVVVPAEWIKNWEKSGRGEFLHLCRILSENKSHDSSTYRDFQQALYELSYHVIKGN
LKHEQASNVLSDISYLVSDTVLKERLDPETLESLGLIKQSQQFNQKSVKIKTKLFYKQQK
FNLLREENEGYAKLIAELGQDLSGSITSDLILENIKSLIGCFNLDPNRVLDVILEVFECR
PEHDDFFISLLESYMSMCEPQTLCHILGFKFKFYQVKKNVYKMFQCEKGCWHNNPCTEFR
YLEPNGETPSSLYRVAAVLLQFNLIDLDDLYVHLLPADNCIMDEHKREIAEAKQIPPDNQ
KLGLLEALLKIGDWQHAQNIMDQMPPYYAASHKLIALAICKLIHITIEPLYRRILRSSID
SSCGYSPIDQSLPQKPQPCDFCVAAGCCRQCHFMGRGPCRLLRE
>FGENES 1.5 2 Multiexon gene 117053 - 137028 65 a Ch-
METLTELYVSLILGTFQKPFYLIQESLLLLCRVGSLRLLGGHTEVSCVYPYQKVHIDREH
MMGRP
>FGENES 1.5 3 Multiexon gene 155409 - 258791 471 a Ch+
MLYWVRQPTADENILIKGMRKEGNQKSQGIANEVAQQVKTVGKTILKAERRNTGAGGGDY
EVLTAHVRALGQLLGSSRAGGSGGGGGRGCKGLIFSYCPHPVRGGGGTLAAPGAGVALIE
GRPAQVVMCYSVWKEPYVGYHSTEKVDKSYFQEKMTFNSFEGSKTCVPADINKEEEFVEE
FNRLKTFANFPSGSPVSASTLARAGFLYTGEGDTVRCFSCHAAVDRWQYGDSAVGRHRKV
SPNCRFINGFYLENSATQSTNSGIQNGEGDKVKCFHCGGGLTDWKPSEDPWEQHAKWYPG
CKYLLEQKGQEYINNIHLTHSLEECLVRTTEKTPSLTRRIDDTIFQNPMVQEAIRMGFSF
KDIKKIMEEKIQISGSNYKSLEVLVADLVNAQKDSMQDESSQTSLQKEISTEEQLRRLQE
EKLCKICMDRNIAIVFVPCGHLVTCKQCAEAVDKCPMCYTVITFKQKIFMS
>FGENES 1.5 4 Multiexon gene 274813 - 294987 89 a Ch-
MKLNEFGVVQYKFLFIFYLIEEKTDEEMETERLPGAFSHHESSVELLLFQIDLSFELIDH
FQMKTDCLSSALSKFWLLIFVCLFGSKGR
>FGENES 1.5 5 Multiexon gene 311693 - 392398 295 a Ch+
MPDWAATLAPREGRRGPGNESRSEPSQPLDSHGPGLRRTFLPPSPRHPTKDRRTAARSGP
RRKRGQTNELLSLGEPELEVGWGASRSRGRKAGRLWLGWGRARCRVLLFIPTPTRTVFLK
ARTELILAPGGSSLHKLLPGVPEDDKEMIAAPEIPTDFNLLQESETHFSSDTDFEDIEGK
NQKQGKGKTCKKGKKGPAEKGKGGNGGGKPPSGPNRMNGHHQQNGVENMMLFEVVKMGKS
AMQSVVDDWIESYKHDRDIALLDLINFFIQCSGCKAFPGIQHLGMKYGKILKRDT
>FGENES 1.5 6 Multiexon gene 396798 - 433142 640 a Ch+
MAGPQWKKFKSSFCEFIGVLVRQCQYSIIYDEYMMDTVISLLTGLSDSQVRAFRHTSTLA
AMKLMTALVNVALNLSINMDNTQRQYEAERNKMIGKRANERLELLLQKRKELQENQDEIE
NMMNAIFKGVFVHRYRDAIAEIRAICIEEIGIWMKMYSDAFLNDSYLKYVGWTMHDKQGE
VRLKCLTALQGLYYNKELNSKLELFTSRFKLHEHAAYLVDSMWDCATELLKDWECMNSLL
LEEPLSGEEAKEKKTQLDDRTKITELFAVALPQLLAKYSVDAEKVTNLLQLPQYFDLEIY
TTGRLEKHLDALLRQIRNIVEKHTDTDVLEACSKTYHALCNEEFTIFNRVDISRSQLIDE
LADKFNRLLEDFLQEGEEPDEDDAYQIVIHALQCTHYVILWQLAKITESSSTKLMLNFFK
EDLLRLKKQMRVFCQICQHYLTNVNTTVKEQAFTILCDILMIFSHQIMSGGRDMLEPLVY
TPDSSLQSELLSFILDHVFIEQDDDNNSADGQQEDEASKIEALHKRRNLLAAFCKLIVYT
VVEMNTAADIFKQYMKYYNDYGDIIKETMSKTRQIDKIQCAKTLILSLQQLFNEMIQENG
YNFDRSSSTFSGIKELARRFALTFGLDQLKTREAIAMLHK
>FGENES 1.5 7 Multiexon gene 438272 - 452874 186 a Ch+
MSVISGISSRGSTVRSKKSKPSTGKRKVVEGMQLSLTEESSSSDSMWLSREQTLHTPVMM
QTPQLTSTIMREPKRLRPEDSFMSVYPMQTEHHQTPLDYNRRGTSLMEDDEEPIVEDVMM
SSEGRIEDLNEGMDFDTMDIDLPPSKNRRERTELKPDFFDPASIMDESLEYIESINKYPD
AVNCQK 