Alignment of STAG vs GrailEXP/120-1112

                   *->ffiqaCGCKgiVtdHdmfknmsnkeIIrrlteeFdeqdSgDYPLims
                      ffiq++GCKg Vt  +mf+ m+n+eIIr++teeFde dSgDYPL+m 
    GrailEXP   120    FFIQCSGCKGVVTA-EMFRHMQNSEIIRKMTEEFDE-DSGDYPLTMA 164  

                   gpkKswKKFkeGPLYQNFceFvtKtLiiqCqyslLYDeflmDdTQIVTGN
                   gp  +wKKFk+     +FceF++ +L++qCqys++YDe++mD+       
    GrailEXP   165 GP--QWKKFKS-----SFCEFIG-VLVRQCQYSIIYDEYMMDT------- 199  

                   LvisLLTGLSDSSVCqVRAFRhTsTLaAmkLmtaLVdVAlnLskNhkdnt
                    visLLTGLSDS   qVRAFRhTsTLaAmkLmtaLV+VAlnLs+ + dnt
    GrailEXP   200 -VISLLTGLSDS---QVRAFRHTSTLAAMKLMTALVNVALNLSI-NMDNT 244  

                   qkQleAErnKlkkkRAdneRLEsLlkkrsetqEnqeeIesmmnyiFkgvF
                   q+Q+eAErnK+++kRA neRLE+Ll+kr+e+qEnq+eIe+mmn+iFkgvF
    GrailEXP   245 QRQYEAERNKMIGKRA-NERLELLLQKRKELQENQDEIENMMNAIFKGVF 293  

                   VHRYRDvlpdIRaiCIqelGiWmksYPelFLkDsYLKYiGWtLhDKsgeV
                   VHRYRD++++IRaiCI+e+GiWmk+Y+++FL+DsYLKY+GWt+hDK+geV
    GrailEXP   294 VHRYRDAIAEIRAICIEEIGIWMKMYSDAFLNDSYLKYVGWTMHDKQGEV 343  

                   RlkclkALqpLYekdelspkLELFTnRFKDRmVsMtlDKeleVAVeAVrL
                   Rlkcl ALq+LY + el  kLELFT+RFKDR+VsMtlDKe++VAV A++L
    GrailEXP   344 RLKCLTALQGLYYNKELNSKLELFTSRFKDRIVSMTLDKEYDVAVQAIKL 393  

                   vilILkvmeqlLtdaDcepvYdlvyssnrpvavAaGEFlyfKlfaqkfns
                   ++l L  +e++Lt +Dce+vY+lvys++rpvavAaGEFly+Klf+ + ++
    GrailEXP   394 LTLVLQSSEEVLTAEDCENVYHLVYSAHRPVAVAAGEFLYKKLFSRRDPE 443  

                   dseesltkRekrrSpnapkfLvRmLviLReFFiEseLTHeHaaYlVDsLw
                     e  + kR++r+ pna+  Lv+ Lv    FF+EseL HeHaaYlVDs+w
    GrailEXP   444 --EDGMMKRRGRQGPNAN--LVKTLV---FFFLESEL-HEHAAYLVDSMW 485  

                   ecsgpvvKDWecmteLLLeePnpreysLdDeqEstLIeilvsSvrqAatG
                   +c+ +++KDWecm +LLLeeP  +e++L+D+qEs+LIei+ +++rqAa+ 
    GrailEXP   486 DCATELLKDWECMNSLLLEEPLSGEEALTDRQESALIEIMLCTIRQAAEC 535  

                   eppVGrhtnrKCnLtaKErkeiFeddrkkLTehlipllPqLLdKfsADae
                   +ppVGr+t+++ +LtaKE k++  ddr k+Te + + lPqLL+K+s Dae
    GrailEXP   536 HPPVGRGTGKR-VLTAKEKKTQ-LDDRTKITELFAVALPQLLAKYSVDAE 583  

                   KvanLlqipqyfdLeiYsGLtaRqEkhLkalldqikevveKHvekevLeA
                   Kv+nLlq+pqyfdLeiY+  t+R+EkhL+all+qi  +veKH++ +vLeA
    GrailEXP   584 KVTNLLQLPQYFDLEIYT--TGRLEKHLDALLRQIRNIVEKHTDTDVLEA 631  

                   cakalyiLCnESKGeltifsrvdlarsqliDeltdkikitdkeirelmds
                   c+k++  LCnE   e+tif+rvd+ rsqliDel+dk++     +++++++
    GrailEXP   632 CSKTYHALCNE---EFTIFNRVDISRSQLIDELADKFN---RLLEDFLQE 675  

                   tEigneddiynllitLKrLsafqnfhdltlwelFdnlirtLknalkKfli
                   +E+++edd+y +l+tLKr++af+n+hdl +w+lF   +++Lk++     i
    GrailEXP   676 GEEPDEDDAYQVLSTLKRITAFHNAHDLSKWDLFACNYKLLKTG-----I 720  

                   ergDelpeevivkaLtcsyysllWnllsIlkRecesepseeqLssLrkrr
                   e g ++pe+++  aL+c +y +lW+l +I+    es+  +e+L+ L+k +
    GrailEXP   721 ENG-DMPEQIVIHALQCTHYVILWQLAKIT----ESSSTKEDLLRLKKQM 765  

                   dsfieicfecLndsveeeikeqayllNRlCdLLlifsrqlieserdSGkL
                     f+ ic+  L + v++ +keqa+    lCd+L+ifs+q++ ++rd   L
    GrailEXP   766 RVFCQICQHYLTN-VNTTVKEQAFTI--LCDILMIFSHQIMSGGRD--ML 810  

                   epLvydPdsvllseLaiflAEmdnVfiisldvtnsmegdeteekekIEel
                   epLvy Pds l+seL++f    d+Vfi ++d +ns +g+ ++e+ kIE+l
    GrailEXP   811 EPLVYTPDSSLQSELLSFI--LDHVFIEQDDDNNSADGQQEDEASKIEAL 858  

                   hKrrnllAaycKLviydivpldYlAadifkhyykhynDyGDIIKntLsKa
                   hKrrnllAa+cKL++y +v++   Aadifk y+k+ynDyGDIIK+t sK+
    GrailEXP   859 HKRRNLLAAFCKLIVYTVVEMN-TAADIFKQYMKYYNDYGDIIKETMSKT 907  

                   ReidfvqcssilllsLkqlyeRYSSeLdedqgpndLdetsaffeeiReLA
                   R+id++qc+++l+lsL+ql++    e +++ g n  d++s  f++i+eLA
    GrailEXP   908 RQIDKIQCAKTLILSLQQLFN----EMIQENGYN-FDRSSSTFSGIKELA 952  

                   krlSaltFGldqiKnRelvaslhKeGIeFAfrealpkeklqaPknLlFLE
                   +r+ altFGldq+K+Re++a+lhK+GIeFAf+e +p + +++P nL+FL+
    GrailEXP   953 RRF-ALTFGLDQLKTREAIAMLHKDGIEFAFKEPNPQGESHPPLNLAFLD 1001 

                   vliLEFsekNKLliQDiiDiKKsvqsYLeKiltqrvlespseeWePlitY
                   +l+ EFs+k  Ll+QD    K++v  YLeK+ t +++ +++++W Pl +Y
    GrailEXP  1002 ILS-EFSSK--LLRQD----KRTVYVYLEKFMTFQMSLRREDVWLPLMSY 1044 

                   leSLspgcLKNEDlqdddeaasvrsreessrnkrerppaeekr.......
                   ++SL  g+    D+ +++ ++ ++++ ++ ++k++ ++ ++k  ++ + +
    GrailEXP  1045 RNSLLAGG---DDDTMSVISGISSRGSTVRSKKSKPSTGKRKVvegmqls 1091 

                   LFeeesgsdetWLnrtddeit<-*
                   L ee s+sd  WL r  ++ t   
    GrailEXP  1092 LTEESSSSDSMWLSREQTLHT    1112 

Alignment of Bromodomain vs GrailEXP/864-949

                   *->lnklllkvleeldekgpralpflfpVlpsklelPDYYeiIkkPMDLk
                      l  ++ k++ ++     ++ +++f++  +   + DY +iIk     +
    GrailEXP   864    LLAAFCKLIVYTVVEM-NTAADIFKQYMK--YYNDYGDIIK-----E 902  

                   TIkkklkngkYissleeFvaDfnLmfsNAkt...YNepdsevykdAkk<-
                   T+ k  +  k  + ++ ++  ++++f+   ++++YN + s+   +++k  
    GrailEXP   903 TMSKTRQIDKI-QCAKTLILSLQQLFNEMIQengYNFDRSSSTFSGIK   949  

                   *
                    
    GrailEXP     -   -    

Alignment of AdoHcyase_NAD vs GrailEXP/119-145

                   *->difVTtTGnkDiitlehlekmkddaIV<-*
                      ++f+ + G+k ++t+e++++m+++ I+   
    GrailEXP   119    NFFIQCSGCKGVVTAEMFRHMQNSEII    145  

Alignment of DUF1296 vs GrailEXP/605-631

                   *->ipaelrkiiQsikEvVgsqHSdadIyam<-*
                      + ++l + +++i+ +V++ H d d++ +   
    GrailEXP   605    LEKHLDALLRQIRNIVEK-HTDTDVLEA    631  

Alignment of RepB vs GrailEXP/654-672

                   *->nvrfgryLarnldelyeeF<-*
                      +++ +++La+ + +l+e+F   
    GrailEXP   654    RSQLIDELADKFNRLLEDF    672  

Alignment of PRE_C2HC vs GrailEXP/854-864

                   *->tVErphKrrep<-*
                      ++E  hKrr++   
    GrailEXP   854    KIEALHKRRNL    864  

Alignment of Rsd_AlgQ vs GrailEXP/858-871

                   *->LhkRqhlvvaYdkL<-*
                      LhkR+ l+ a++kL   
    GrailEXP   858    LHKRRNLLAAFCKL    871  

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