Pfam: Results for Userseq

Protein families database of alignments and HMMs

Results for Userseq

Trusted matches - domains scoring higher than the gathering threshold

Domain Start End Bits Evalue Alignment Mode

BIR 227 292 117.50 2.2e-32 Align ls
BIR 364 429 137.90 1.6e-38 Align ls
STAG 957 1873 1650.10 0 Align ls
BIR 466 490 25.10 8.2e-07 Align fs

Domain	Start	End	Bits	Evalue	Alignment	Mode
BIR	227	292	117.50	2.2e-32	Align	ls
BIR	364	429	137.90	1.6e-38	Align	ls
STAG	957	1873	1650.10	0	Align	ls
BIR	466	490	25.10	8.2e-07	Align	fs

Matches to Pfam-B

Domain Start End Alignment

Pfam-B_16749 199 226 Align
Pfam-B_16718 293 335 Align
Pfam-B_12032 336 363 Align
Pfam-B_14434 430 465 Align
Pfam-B_8509 505 557 Align
Pfam-B_5845 907 956 Align
Pfam-B_105378 1125 1267 Align
Pfam-B_86402 1571 1784 Align
Pfam-B_18992 1874 1917 Align
Pfam-B_18446 1918 1971 Align

Domain	Start	End	Alignment
Pfam-B_16749	199	226	Align
Pfam-B_16718	293	335	Align
Pfam-B_12032	336	363	Align
Pfam-B_14434	430	465	Align
Pfam-B_8509	505	557	Align
Pfam-B_5845	907	956	Align
Pfam-B_105378	1125	1267	Align
Pfam-B_86402	1571	1784	Align
Pfam-B_18992	1874	1917	Align
Pfam-B_18446	1918	1971	Align

[1989 residues]

BIR 227-292
BIR 364-429
BIR 466-490
STAG 957-1873

Potential matches - Domains with Evalues above the cutoff

Domain Start End Bits Evalue Alignment Mode

Bromodomain 1625 1710 -30.50 0.79 Align ls
Vps16_N 138 158 3.40 0.3 Align fs
EzrA 184 196 1.90 0.68 Align fs
SWIRM 363 384 4.30 0.8 Align fs
RNA_pol_Rpb2_1 508 975 1.00 0.45 Align fs
Herpes_U44 527 545 3.20 0.38 Align fs
Polyoma_coat2 713 735 3.40 0.19 Align fs
MiaE 766 780 3.20 0.085 Align fs
AdoHcyase_NAD 956 982 10.80 0.0068 Align fs
DUF1296 1439 1465 6.80 0.11 Align fs
RepB 1488 1506 4.30 0.67 Align fs
STAG 1520 1544 4.80 0.031 Align fs
PRE_C2HC 1615 1625 3.90 0.99 Align fs
Rsd_AlgQ 1619 1632 2.60 0.89 Align fs

Domain	Start	End	Bits	Evalue	Alignment	Mode
Bromodomain	1625	1710	-30.50	0.79	Align	ls
Vps16_N	138	158	3.40	0.3	Align	fs
EzrA	184	196	1.90	0.68	Align	fs
SWIRM	363	384	4.30	0.8	Align	fs
RNA_pol_Rpb2_1	508	975	1.00	0.45	Align	fs
Herpes_U44	527	545	3.20	0.38	Align	fs
Polyoma_coat2	713	735	3.40	0.19	Align	fs
MiaE	766	780	3.20	0.085	Align	fs
AdoHcyase_NAD	956	982	10.80	0.0068	Align	fs
DUF1296	1439	1465	6.80	0.11	Align	fs
RepB	1488	1506	4.30	0.67	Align	fs
STAG	1520	1544	4.80	0.031	Align	fs
PRE_C2HC	1615	1625	3.90	0.99	Align	fs
Rsd_AlgQ	1619	1632	2.60	0.89	Align	fs

Alignments of Pfam-A domains to HMMs

Format for fetching alignments to seed

Alignment of BIR vs hg16_dna|GENSCAN_predicted_peptide_3|1989_aa/227-292

                   *->RlkTFqnkkWPisnlqsshctpeqLAkAGFyytgvgDevDsArCffC
                      RlkTF+n  +P  +++s    +++LA+AGF ytg gD v   rCf+C
  hg16_dna|G   227    RLKTFAN--FPSGSPVS----ASTLARAGFLYTGEGDTV---RCFSC 264  

                   gveLknWepgDdPweeHkrwsPnCpFvl<-*
                   +  +++W++gD +  +H+++sPnC+F++   
  hg16_dna|G   265 HAAVDRWQYGDSAVGRHRKVSPNCRFIN    292

Alignment of BIR vs hg16_dna|GENSCAN_predicted_peptide_3|1989_aa/364-429

                   *->RlkTFqnkkWPisnlqsshctpeqLAkAGFyytgvgDevDsArCffC
                      Rlk+Fqn  WP + +      p++LA AG+yytg+gD+v   +Cf+C
  hg16_dna|G   364    RLKSFQN--WPDYAHLT----PRELASAGLYYTGIGDQV---QCFCC 401  

                   gveLknWepgDdPweeHkrwsPnCpFvl<-*
                   g++LknWep+D +w+eH+r++PnC Fvl   
  hg16_dna|G   402 GGKLKNWEPCDRAWSEHRRHFPNCFFVL    429

Alignment of STAG vs hg16_dna|GENSCAN_predicted_peptide_3|1989_aa/957-1873

                   *->ffiqaCGCKgiVtdHdmfknmsnkeIIrrlteeFdeqdSgDYPLims
                      ffiq++GCKg Vt  +mf+ m+n+eIIr++teeFde dSgDYPL+m 
  hg16_dna|G   957    FFIQCSGCKGVVTA-EMFRHMQNSEIIRKMTEEFDE-DSGDYPLTMA 1001 

                   gpkKswKKFkeGPLYQNFceFvtKtLiiqCqyslLYDeflmDdTQIVTGN
                   gp  +wKKFk+     +FceF++ +L++qCqys++YDe++mD+       
  hg16_dna|G  1002 GP--QWKKFKS-----SFCEFIG-VLVRQCQYSIIYDEYMMDT------- 1036 

                   LvisLLTGLSDSSVCqVRAFRhTsTLaAmkLmtaLVdVAlnLskNhkdnt
                    visLLTGLSDS   qVRAFRhTsTLaAmkLmtaLV+VAlnLs+ + dnt
  hg16_dna|G  1037 -VISLLTGLSDS---QVRAFRHTSTLAAMKLMTALVNVALNLSI-NMDNT 1081 

                   qkQleAErnKlkkkRAdneRLEsLlkkrsetqEnqeeIesmmnyiFkgvF
                   q+Q+eAErnK+++kRA neRLE+Ll+kr+e+qEnq+eIe+mmn+iFkgvF
  hg16_dna|G  1082 QRQYEAERNKMIGKRA-NERLELLLQKRKELQENQDEIENMMNAIFKGVF 1130 

                   VHRYRDvlpdIRaiCIqelGiWmksYPelFLkDsYLKYiGWtLhDKsgeV
                   VHRYRD++++IRaiCI+e+GiWmk+Y+++FL+DsYLKY+GWt+hDK+geV
  hg16_dna|G  1131 VHRYRDAIAEIRAICIEEIGIWMKMYSDAFLNDSYLKYVGWTMHDKQGEV 1180 

                   RlkclkALqpLYekdelspkLELFTnRFKDRmVsMtlDKeleVAVeAVrL
                   Rlkcl ALq+LY + el  kLELFT+RFKDR+VsMtlDKe++VAV A++L
  hg16_dna|G  1181 RLKCLTALQGLYYNKELNSKLELFTSRFKDRIVSMTLDKEYDVAVQAIKL 1230 

                   vilILkvmeqlLtdaDcepvYdlvyssnrpvavAaGEFlyfKlfaqkfns
                   ++l L  +e++Lt +Dce+vY+lvys++rpvavAaGEFly+Klf+ + ++
  hg16_dna|G  1231 LTLVLQSSEEVLTAEDCENVYHLVYSAHRPVAVAAGEFLYKKLFSRRDPE 1280 

                   dseesltkRekrrSpnapkfLvRmLviLReFFiEseLTHeHaaYlVDsLw
                     e  + kR++r+ pna+  Lv+ Lv    FF+EseL HeHaaYlVDs+w
  hg16_dna|G  1281 --EDGMMKRRGRQGPNAN--LVKTLV---FFFLESEL-HEHAAYLVDSMW 1322 

                   ecsgpvvKDWecmteLLLeePnpreysLdDeqEstLIeilvsSvrqAatG
                   +c+ +++KDWecm +LLLeeP  +e+   D+qEs+LIei+ +++rqAa+ 
  hg16_dna|G  1323 DCATELLKDWECMNSLLLEEPLSGEE---DRQESALIEIMLCTIRQAAEC 1369 

                   eppVGrhtnrKCnLtaKErkeiFeddrkkLTehlipllPqLLdKfsADae
                   +ppVGr+t+++ +LtaKE k++  ddr k+Te + + lPqLL+K+s Dae
  hg16_dna|G  1370 HPPVGRGTGKR-VLTAKEKKTQ-LDDRTKITELFAVALPQLLAKYSVDAE 1417 

                   KvanLlqipqyfdLeiYsGLtaRqEkhLkalldqikevveKHvekevLeA
                   Kv+nLlq+pqyfdLeiY+  t+R+EkhL+all+qi  +veKH++ +vLeA
  hg16_dna|G  1418 KVTNLLQLPQYFDLEIYT--TGRLEKHLDALLRQIRNIVEKHTDTDVLEA 1465 

                   cakalyiLCnESKGeltifsrvdlarsqliDeltdkikitdkeirelmds
                   c+k++  LCnE   e+tif+rvd+ rsqliDel+dk++     +++++++
  hg16_dna|G  1466 CSKTYHALCNE---EFTIFNRVDISRSQLIDELADKFN---RLLEDFLQE 1509 

                   tEigneddiynllitLKrLsafqnfhdltlwelFdnlirtLknalkKfli
                   +E+++edd+y                                        
  hg16_dna|G  1510 GEEPDEDDAY---------------------------------------- 1519 

                   ergDelpeevivkaLtcsyysllWnllsIlkRecesepseeqLssLrkrr
                           +++  aL+c +y +lW+l +I+    es              
  hg16_dna|G  1520 --------QIVIHALQCTHYVILWQLAKIT----ES-------------- 1543 

                   dsfieicfecLndsveeeikeqayllNRlCdLLlifsrqlieserdSGkL
                              +         +a+    lCd+L+ifs+q++ ++rd   L
  hg16_dna|G  1544 -----------SS-------TKAFTI--LCDILMIFSHQIMSGGRD--ML 1571 

                   epLvydPdsvllseLaiflAEmdnVfiisldvtnsmegdeteekekIEel
                   epLvy Pds l+seL++f    d+Vfi ++d +ns +g+ ++e+ kIE+l
  hg16_dna|G  1572 EPLVYTPDSSLQSELLSFI--LDHVFIEQDDDNNSADGQQEDEASKIEAL 1619 

                   hKrrnllAaycKLviydivpldYlAadifkhyykhynDyGDIIKntLsKa
                   hKrrnllAa+cKL++y +v++   Aadifk y+k+ynDyGDIIK+t sK+
  hg16_dna|G  1620 HKRRNLLAAFCKLIVYTVVEMN-TAADIFKQYMKYYNDYGDIIKETMSKT 1668 

                   ReidfvqcssilllsLkqlyeRYSSeLdedqgpndLdetsaffeeiReLA
                   R+id++qc+++l+lsL+ql++    e +++ g n  d++s  f++i+eLA
  hg16_dna|G  1669 RQIDKIQCAKTLILSLQQLFN----EMIQENGYN-FDRSSSTFSGIKELA 1713 

                   krlSaltFGldqiKnRelvaslhKeGIeFAfrealpkeklqaPknLlFLE
                   +r+ altFGldq+K+Re++a+lhK+GIeFAf+e +p + +++P nL+FL+
  hg16_dna|G  1714 RRF-ALTFGLDQLKTREAIAMLHKDGIEFAFKEPNPQGESHPPLNLAFLD 1762 

                   vliLEFsekNKLliQDiiDiKKsvqsYLeKiltqrvlespseeWePlitY
                   +l+ EFs+k  Ll+QD    K++v  YLeK+ t +++ +++++W Pl +Y
  hg16_dna|G  1763 ILS-EFSSK--LLRQD----KRTVYVYLEKFMTFQMSLRREDVWLPLMSY 1805 

                   leSLspgcLKNEDlqdddeaasvrsreessrnkrerppaeekr.......
                   ++SL  g+    D+ +++ ++ ++++ ++ ++k++ ++ ++k  ++ + +
  hg16_dna|G  1806 RNSLLAGG---DDDTMSVISGISSRGSTVRSKKSKPSTGKRKVvegmqls 1852 

                   LFeeesgsdetWLnrtddeit<-*
                   L ee s+sd  WL r  ++ t   
  hg16_dna|G  1853 LTEESSSSDSMWLSREQTLHT    1873

Alignment of BIR vs hg16_dna|GENSCAN_predicted_peptide_3|1989_aa/466-490

                   *->RlkTFqnkkWPisnlqsshctpeqLAkAGFyyt<-*
                      R++TF +  W +s++       eqLA+AGFy +   
  hg16_dna|G   466    RIFTFGT--WIYSVNK------EQLARAGFYAL    490

Alignment of Vps16_N vs hg16_dna|GENSCAN_predicted_peptide_3|1989_aa/138-158

                   *->psaeWellkdqlYYrkeaLgtldW<-*
                      +  +W++l+++   r  +L+ +dW   
  hg16_dna|G   138    NLLSWFRLGPS---RRAELAFPDW    158

Alignment of EzrA vs hg16_dna|GENSCAN_predicted_peptide_3|1989_aa/184-196

                   *->PGvtkrieesyek<-*
                      PG+++++ +sy+    
  hg16_dna|G   184    PGAVEKVDKSYFQ    196

Alignment of SWIRM vs hg16_dna|GENSCAN_predicted_peptide_3|1989_aa/363-384

                   *->iaepsyaawldlsaihpiElls<-*
                       + +s+++w d+ +++p+El+s   
  hg16_dna|G   363    ARLKSFQNWPDYAHLTPRELAS    384

Alignment of RNA_pol_Rpb2_1 vs hg16_dna|GENSCAN_predicted_peptide_3|1989_aa/508-975

                RF    xxxxxxxxxxxxxxxx                               
                   *->Fivngsekvivaqikr...............................
                      F ++ ++k++ ++i+ ++++ ++ +    +  + ++++ ++++++++
  hg16_dna|G   508    FSFKDIKKIMEEKIQIsgsnykslevlvadlvnaqkdsmqdessqts 554  

                RF                                                   
                   ..................................................
                    ++++++  ++ ++++   ++ +++ ++++  ++++ ++++++ ++ +  
  hg16_dna|G   555 lqkgksgalegigpprvflprvksswrskrlargggargtspganpaslw 604  

                RF                                                   
                   ..................................................
                    ++ +++ +++ +++ +++ ++++++ ++ ++++  ++ + ++ ++++++
  hg16_dna|G   605 iptaqgsaghsyrppldtplkteeprldrvrggsaakrmkfegvkkrkgk 654  

                RF                                                   
                   ..................................................
                   +   ++++++ ++ +++++ ++++ +  +  + ++++++ + ++ +  ++
  hg16_dna|G   655 nilyqprgeeapglrkkeewgrrtvsllplctlrgegssfrlpslkifss 704  

                RF                                                   
                   ..................................................
                    ++++ +++  ++++++   ++++++  +++++ +  +++ +   +++  
  hg16_dna|G   705 fprptlprglygdppppwvaqngergaaqdggsaslcssrfrflfsgrll 754  

                RF                                                   
                   ..................................................
                   + ++++ + +++    +++++ + +++     + +   +++ +++  +++
  hg16_dna|G   755 slgepeleartelilapgrqpvrfhstllfllgvdflfsspldpeicgrr 804  

                RF                                                   
                   ..................................................
                     +++++ ++++++     + +  ++ +++  + + + +++++++  +++
  hg16_dna|G   805 fwdekgrmgrgrekclaaasasmvrqmrgqycgiqvkatqetngdflges 854  

                RF                                                   
                   ..................................................
                   +++ +++++ ++ ++++++++++++ +++++++ ++++++++++++++++
  hg16_dna|G   855 ethfssdtdfediegknqkqgkgktckkgkkgpaekgkggngggkppsgp 904  

                RF               xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
                   ..............ellqsllrvllkklekevreklqkllkkkkkkelkl
                   ++ ++++++++ ++++l + ++++   +++ v + ++  +++++ + l l
  hg16_dna|G   905 nrmnghhqqngvenMMLFEVVKMGKSAMQSVVDDWIESYKHDRDIALLDL 954  

                RF xxxxxxxxxxxxxxxxxxxxx   
                   kklvksaktitealkeflatg<-*
                    +++ +++  +  ++  +  +   
  hg16_dna|G   955 INFFIQCSGCKGVVTAEMFRH    975

Alignment of Herpes_U44 vs hg16_dna|GENSCAN_predicted_peptide_3|1989_aa/527-545

                   *->nfkdlGvtsaDllefdRDs<-*
                      n+k l+v+ aDl + ++Ds   
  hg16_dna|G   527    NYKSLEVLVADLVNAQKDS    545

Alignment of Polyoma_coat2 vs hg16_dna|GENSCAN_predicted_peptide_3|1989_aa/713-735

                   *->GLYGDiTPtWeayleElekekkk<-*
                      GLYGD  P W a+  E+++ +++   
  hg16_dna|G   713    GLYGDPPPPWVAQNGERGAAQDG    735

Alignment of MiaE vs hg16_dna|GENSCAN_predicted_peptide_3|1989_aa/766-780

                   *->ELIssPDpEF.RfHS<-*
                      ELI++P + + RfHS   
  hg16_dna|G   766    ELILAPGRQPvRFHS    780

Alignment of AdoHcyase_NAD vs hg16_dna|GENSCAN_predicted_peptide_3|1989_aa/956-982

                   *->difVTtTGnkDiitlehlekmkddaIV<-*
                      ++f+ + G+k ++t+e++++m+++ I+   
  hg16_dna|G   956    NFFIQCSGCKGVVTAEMFRHMQNSEII    982

Alignment of DUF1296 vs hg16_dna|GENSCAN_predicted_peptide_3|1989_aa/1439-1465

                   *->ipaelrkiiQsikEvVgsqHSdadIyam<-*
                      + ++l + +++i+ +V++ H d d++ +   
  hg16_dna|G  1439    LEKHLDALLRQIRNIVEK-HTDTDVLEA    1465

Alignment of RepB vs hg16_dna|GENSCAN_predicted_peptide_3|1989_aa/1488-1506

                   *->nvrfgryLarnldelyeeF<-*
                      +++ +++La+ + +l+e+F   
  hg16_dna|G  1488    RSQLIDELADKFNRLLEDF    1506

Alignment of PRE_C2HC vs hg16_dna|GENSCAN_predicted_peptide_3|1989_aa/1615-1625

                   *->tVErphKrrep<-*
                      ++E  hKrr++   
  hg16_dna|G  1615    KIEALHKRRNL    1625

Alignment of Rsd_AlgQ vs hg16_dna|GENSCAN_predicted_peptide_3|1989_aa/1619-1632

                   *->LhkRqhlvvaYdkL<-*
                      LhkR+ l+ a++kL   
  hg16_dna|G  1619    LHKRRNLLAAFCKL    1632

Alignments of Pfam-B domains to best-matching to Pfam-B sequence

Format for fetching alignments to Pfam-B families:

Query hg16_dna|GENSCAN_predicted_peptide_3|1989_aa/199-226 matching Pfam-B_16749

                                             temp 199 MTFNSFEGSKTCVPADINKEEEFVEEFN 226
                                                      MTFNSFEGSKTCVPADINKEEEFVEEFN
     hg16_dna|GENSCAN_predicted_peptide_3|1989_aa 199 MTFNSFEGSKTCVPADINKEEEFVEEFN 226

Query hg16_dna|GENSCAN_predicted_peptide_3|1989_aa/293-335 matching Pfam-B_16718

                                             temp 293 GFYLENSATQSTNSGIQNGQYKVENYLGSRDHFALDRPSETHA 335
                                                      GFYLENSATQSTNSGIQNGQYKVENYLGSRDHFALDRPSETHA
     hg16_dna|GENSCAN_predicted_peptide_3|1989_aa 293 GFYLENSATQSTNSGIQNGQYKVENYLGSRDHFALDRPSETHA 335

Query hg16_dna|GENSCAN_predicted_peptide_3|1989_aa/336-363 matching Pfam-B_12032

                                             temp 336 DYLLRTGQVVDISDTIYPRNPAMYSEEA 363
                                                      DYLLRTGQVVDISDTIYPRNPAMYSEEA
     hg16_dna|GENSCAN_predicted_peptide_3|1989_aa 336 DYLLRTGQVVDISDTIYPRNPAMYSEEA 363

Query hg16_dna|GENSCAN_predicted_peptide_3|1989_aa/430-465 matching Pfam-B_14434

                                             temp 430 GRNLNIRSESDAVSSDRNFPNSTNLPRNPSMADYEA 465
                                                      GRNLNIRSESDAVSSDRNFPNSTNLPRNPSMADYEA
     hg16_dna|GENSCAN_predicted_peptide_3|1989_aa 430 GRNLNIRSESDAVSSDRNFPNSTNLPRNPSMADYEA 465

Query hg16_dna|GENSCAN_predicted_peptide_3|1989_aa/505-557 matching Pfam-B_8509

                                             temp 505 RMGFSFKDIKKIMEEKIQISGSNYKSLEVLVADLVNAQKDSMQDESSQTS 554
                                                      RMGFSFKDIKKIMEEKIQISGSNYKSLEVLVADLVNAQKDSMQDESSQTS
     hg16_dna|GENSCAN_predicted_peptide_3|1989_aa 505 RMGFSFKDIKKIMEEKIQISGSNYKSLEVLVADLVNAQKDSMQDESSQTS 554

                                             temp 555 LQK 557
                                                      LQK
     hg16_dna|GENSCAN_predicted_peptide_3|1989_aa 555 LQK 557

Query hg16_dna|GENSCAN_predicted_peptide_3|1989_aa/907-956 matching Pfam-B_5845

                                             temp 907 MNGHHQQNGVENMMLFEVVKMGKSAMQSVVDDWIESYKHDRDIALLDLIN 956
                                                      MNGHHQQNGVENMMLFEVVKMGKSAMQSVVDDWIESYKHDRDIALLDLIN
     hg16_dna|GENSCAN_predicted_peptide_3|1989_aa 907 MNGHHQQNGVENMMLFEVVKMGKSAMQSVVDDWIESYKHDRDIALLDLIN 956

                                             temp 957  956
                                                      
     hg16_dna|GENSCAN_predicted_peptide_3|1989_aa 957  956

Query hg16_dna|GENSCAN_predicted_peptide_3|1989_aa/1125-1267 matching Pfam-B_105378

                                             temp 1125 IFKGVFVHRYRDAIAEIRAICIEEIGIWMKMYSDAFLNDSYLKYVGWTMH 1174
                                                       IFKGVFVHRYRDAIAEIRAICIEEIGIWMKMYSDAFLNDSYLKYVGWTMH
     hg16_dna|GENSCAN_predicted_peptide_3|1989_aa 1125 IFKGVFVHRYRDAIAEIRAICIEEIGIWMKMYSDAFLNDSYLKYVGWTMH 1174

                                             temp 1175 DKQGEVRLKCLTALQGLYYNKELNSKLELFTSRFKDRIVSMTLDKEYDVA 1224
                                                       DKQGEVRLKCLTALQGLYYNKELNSKLELFTSRFKDRIVSMTLDKEYDVA
     hg16_dna|GENSCAN_predicted_peptide_3|1989_aa 1175 DKQGEVRLKCLTALQGLYYNKELNSKLELFTSRFKDRIVSMTLDKEYDVA 1224

                                             temp 1225 VQAIKLLTLVLQSSEEVLTAEDCENVYHLVYSAHRPVAVAAGE 1267
                                                       VQAIKLLTLVLQSSEEVLTAEDCENVYHLVYSAHRPVAVAAGE
     hg16_dna|GENSCAN_predicted_peptide_3|1989_aa 1225 VQAIKLLTLVLQSSEEVLTAEDCENVYHLVYSAHRPVAVAAGE 1267

Query hg16_dna|GENSCAN_predicted_peptide_3|1989_aa/1571-1784 matching Pfam-B_86402

                                             temp 1571 LEPLVYTPDSSLQSELLSFILDHVFIEQDDDNNSADGQQEDEASKIEALH 1620
                                                       LEPLVYTPDSSLQSELLSFILDHVFIEQDDDNNSADGQQEDEASKIEALH
     hg16_dna|GENSCAN_predicted_peptide_3|1989_aa 1571 LEPLVYTPDSSLQSELLSFILDHVFIEQDDDNNSADGQQEDEASKIEALH 1620

                                             temp 1621 KRRNLLAAFCKLIVYTVVEMNTAADIFKQYMKYYNDYGDIIKETMSKTRQ 1670
                                                       KRRNLLAAFCKLIVYTVVEMNTAADIFKQYMKYYNDYGDIIKETMSKTRQ
     hg16_dna|GENSCAN_predicted_peptide_3|1989_aa 1621 KRRNLLAAFCKLIVYTVVEMNTAADIFKQYMKYYNDYGDIIKETMSKTRQ 1670

                                             temp 1671 IDKIQCAKTLILSLQQLFNEMIQENGYNFDRSSSTFSGIKELARRFALTF 1720
                                                       IDKIQCAKTLILSLQQLFNEMIQENGYNFDRSSSTFSGIKELARRFALTF
     hg16_dna|GENSCAN_predicted_peptide_3|1989_aa 1671 IDKIQCAKTLILSLQQLFNEMIQENGYNFDRSSSTFSGIKELARRFALTF 1720

                                             temp 1721 GLDQLKTREAIAMLHKDGIEFAFKEPNPQGESHPPLNLAFLDILSEFSSK 1770
                                                       GLDQLKTREAIAMLHKDGIEFAFKEPNPQGESHPPLNLAFLDILSEFSSK
     hg16_dna|GENSCAN_predicted_peptide_3|1989_aa 1721 GLDQLKTREAIAMLHKDGIEFAFKEPNPQGESHPPLNLAFLDILSEFSSK 1770

                                             temp 1771 LLRQDKRTVYVYLE 1784
                                                       LLRQDKRTVYVYLE
     hg16_dna|GENSCAN_predicted_peptide_3|1989_aa 1771 LLRQDKRTVYVYLE 1784

Query hg16_dna|GENSCAN_predicted_peptide_3|1989_aa/1874-1917 matching Pfam-B_18992

                                             temp 1874 PVMMQTPQLTSTIMREPKRLRPEDSFMSVYPMQTEHHQTPLDYN 1917
                                                       PVMMQTPQLTSTIMREPKRLRPEDSFMSVYPMQTEHHQTPLDYN
     hg16_dna|GENSCAN_predicted_peptide_3|1989_aa 1874 PVMMQTPQLTSTIMREPKRLRPEDSFMSVYPMQTEHHQTPLDYN 1917

Query hg16_dna|GENSCAN_predicted_peptide_3|1989_aa/1918-1971 matching Pfam-B_18446

                                             temp 1918 RRGTSLMEDDEEPIVEDVMMSSEGRIEDLNEGMDFDTMDIDLPPSKNRRE 1967
                                                       RRGTSLMEDDEEPIVEDVMMSSEGRIEDLNEGMDFDTMDIDLPPSKNRRE
     hg16_dna|GENSCAN_predicted_peptide_3|1989_aa 1918 RRGTSLMEDDEEPIVEDVMMSSEGRIEDLNEGMDFDTMDIDLPPSKNRRE 1967

                                             temp 1968 RTEL 1971
                                                       RTEL
     hg16_dna|GENSCAN_predicted_peptide_3|1989_aa 1968 RTEL 1971

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