BLASTP 2.2.8 [Jan-05-2004]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. RID: 1079441185-24359-105716335823.BLASTQ3 Query= hg16_dna_1|geneid_v1.1_predicted_protein_1|369_AA (369 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,678,069 sequences; 748,330,716 total letters If you have any problems or questions with the results of this search please refer to the BLAST FAQs Taxonomy reports
RID: 1079441185-24359-105716335823.BLASTQ3
Query= hg16_dna_1|geneid_v1.1_predicted_protein_1|369_AA (369 letters)
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,678,069 sequences; 748,330,716 total letters
If you have any problems or questions with the results of this search please refer to the BLAST FAQs
Taxonomy reports
Score E Sequences producing significant alignments: (bits) Value gi|37546516|ref|XP_047325.4| Tho2 [Homo sapiens] 695 0.0 gi|38086124|ref|XP_356322.1| similar to Tho2 [Mus musculus] 689 0.0 gi|34876073|ref|XP_223180.2| similar to Tho2 [Rattus norveg... 650 0.0 gi|38080348|ref|XP_144450.2| similar to Tho2 [Mus musculus] 639 0.0 gi|34932840|ref|XP_233081.2| similar to Tho2 [Rattus norveg... 581 e-165 gi|41702296|sp|Q8NI27|THO2_HUMAN THO complex subunit 2 (Tho... 578 e-164 gi|27802720|emb|CAD60810.1| SI:bZ1O18.2 (novel protein simi... 500 e-140 gi|38087092|ref|XP_359343.1| similar to SI:bZ1O18.2 (novel ... 400 e-110 gi|31222868|ref|XP_317233.1| ENSANGP00000011945 [Anopheles ... 253 5e-66 gi|24581012|ref|NP_722763.1| CG31671-PA [Drosophila melanog... 213 8e-54 gi|39584988|emb|CAE64412.1| Hypothetical protein CBG09105 [... 134 3e-30 gi|34906976|ref|NP_914835.1| P0413C03.11 [Oryza sativa (jap... 117 5e-25 gi|42562307|ref|NP_173871.3| expressed protein [Arabidopsis... 116 7e-25 gi|17552208|ref|NP_498392.1| tho2 (164.4 kD) (3H463) [Caeno... 116 8e-25 gi|27311827|gb|AAO00879.1| F5A9.22 [Arabidopsis thaliana] 116 9e-25 gi|9945085|gb|AAG03122.1| F5A9.21 [Arabidopsis thaliana] 111 2e-23 gi|4691407|emb|CAA91079.2| SPAC22F3.14c [Schizosaccharomyce... 85 3e-15 gi|19862882|sp|Q09779|YATE_SCHPO Hypothetical protein C1D4.... 85 3e-15 gi|32413617|ref|XP_327288.1| hypothetical protein [Neurospo... 84 5e-15 gi|42552385|gb|EAA75228.1| hypothetical protein FG05657.1 [... 80 7e-14 gi|40744755|gb|EAA63911.1| hypothetical protein AN2226.2 [A... 79 2e-13 gi|38110038|gb|EAA55817.1| hypothetical protein MG01468.4 [... 78 3e-13 gi|25395798|pir||G88480 protein C16A3.7 [imported] - Caenor... 58 4e-07 gi|44478811|gb|EAJ55617.1| unknown [environmental sequence] 39 0.18 gi|44526689|gb|EAJ87469.1| unknown [environmental sequence] 39 0.23 gi|24375845|ref|NP_719888.1| ATP-dependent DNA helicase Rec... 39 0.24 gi|6324190|ref|NP_014260.1| Required for LacZ RNA expressio... 38 0.36 gi|10186497|gb|AAG14894.1| HypX [Burkholderia pseudomallei] 38 0.43 gi|43822186|gb|EAF65516.1| unknown [environmental sequence] 37 0.69 gi|23100613|ref|NP_694080.1| class III heat shock protein [... 37 0.76 gi|43774923|gb|EAF41940.1| unknown [environmental sequence] 37 0.85 gi|43491165|gb|EAE00391.1| unknown [environmental sequence] 36 1.2 gi|28867305|ref|NP_789924.1| ATP-dependent DNA helicase Rec... 36 1.3 gi|37718872|gb|AAR01743.1| putative kinase interacting prot... 35 2.2 gi|31228034|ref|XP_317984.1| ENSANGP00000010768 [Anopheles ... 35 3.8 gi|43013210|gb|EAB73386.1| unknown [environmental sequence] 34 4.6 gi|28899313|ref|NP_798918.1| glutamate-cysteine ligase [Vib... 34 5.2 gi|3786341|gb|AAC70893.1| cytoplasmic axial filament protei... 34 5.6 gi|42631651|ref|ZP_00157189.1| hypothetical protein Hflu207... 34 6.7 gi|16273263|ref|NP_439504.1| cytoplasmic axial filament pro... 34 6.8 gi|45198576|ref|NP_985605.1| AFR058Cp [Eremothecium gossypi... 33 7.4 gi|42629356|ref|ZP_00154903.1| hypothetical protein Hflu110... 33 7.6 gi|44400206|gb|EAJ00503.1| unknown [environmental sequence] 33 9.3 gi|37524189|ref|NP_927533.1| hypothetical protein [Photorha... 33 9.9 Alignments
Score E Sequences producing significant alignments: (bits) Value gi|37546516|ref|XP_047325.4| Tho2 [Homo sapiens] 695 0.0 gi|38086124|ref|XP_356322.1| similar to Tho2 [Mus musculus] 689 0.0 gi|34876073|ref|XP_223180.2| similar to Tho2 [Rattus norveg... 650 0.0 gi|38080348|ref|XP_144450.2| similar to Tho2 [Mus musculus] 639 0.0 gi|34932840|ref|XP_233081.2| similar to Tho2 [Rattus norveg... 581 e-165 gi|41702296|sp|Q8NI27|THO2_HUMAN THO complex subunit 2 (Tho... 578 e-164 gi|27802720|emb|CAD60810.1| SI:bZ1O18.2 (novel protein simi... 500 e-140 gi|38087092|ref|XP_359343.1| similar to SI:bZ1O18.2 (novel ... 400 e-110 gi|31222868|ref|XP_317233.1| ENSANGP00000011945 [Anopheles ... 253 5e-66 gi|24581012|ref|NP_722763.1| CG31671-PA [Drosophila melanog... 213 8e-54 gi|39584988|emb|CAE64412.1| Hypothetical protein CBG09105 [... 134 3e-30 gi|34906976|ref|NP_914835.1| P0413C03.11 [Oryza sativa (jap... 117 5e-25 gi|42562307|ref|NP_173871.3| expressed protein [Arabidopsis... 116 7e-25 gi|17552208|ref|NP_498392.1| tho2 (164.4 kD) (3H463) [Caeno... 116 8e-25 gi|27311827|gb|AAO00879.1| F5A9.22 [Arabidopsis thaliana] 116 9e-25 gi|9945085|gb|AAG03122.1| F5A9.21 [Arabidopsis thaliana] 111 2e-23 gi|4691407|emb|CAA91079.2| SPAC22F3.14c [Schizosaccharomyce... 85 3e-15 gi|19862882|sp|Q09779|YATE_SCHPO Hypothetical protein C1D4.... 85 3e-15 gi|32413617|ref|XP_327288.1| hypothetical protein [Neurospo... 84 5e-15 gi|42552385|gb|EAA75228.1| hypothetical protein FG05657.1 [... 80 7e-14 gi|40744755|gb|EAA63911.1| hypothetical protein AN2226.2 [A... 79 2e-13 gi|38110038|gb|EAA55817.1| hypothetical protein MG01468.4 [... 78 3e-13 gi|25395798|pir||G88480 protein C16A3.7 [imported] - Caenor... 58 4e-07 gi|44478811|gb|EAJ55617.1| unknown [environmental sequence] 39 0.18 gi|44526689|gb|EAJ87469.1| unknown [environmental sequence] 39 0.23 gi|24375845|ref|NP_719888.1| ATP-dependent DNA helicase Rec... 39 0.24 gi|6324190|ref|NP_014260.1| Required for LacZ RNA expressio... 38 0.36 gi|10186497|gb|AAG14894.1| HypX [Burkholderia pseudomallei] 38 0.43 gi|43822186|gb|EAF65516.1| unknown [environmental sequence] 37 0.69 gi|23100613|ref|NP_694080.1| class III heat shock protein [... 37 0.76 gi|43774923|gb|EAF41940.1| unknown [environmental sequence] 37 0.85 gi|43491165|gb|EAE00391.1| unknown [environmental sequence] 36 1.2 gi|28867305|ref|NP_789924.1| ATP-dependent DNA helicase Rec... 36 1.3 gi|37718872|gb|AAR01743.1| putative kinase interacting prot... 35 2.2 gi|31228034|ref|XP_317984.1| ENSANGP00000010768 [Anopheles ... 35 3.8 gi|43013210|gb|EAB73386.1| unknown [environmental sequence] 34 4.6 gi|28899313|ref|NP_798918.1| glutamate-cysteine ligase [Vib... 34 5.2 gi|3786341|gb|AAC70893.1| cytoplasmic axial filament protei... 34 5.6 gi|42631651|ref|ZP_00157189.1| hypothetical protein Hflu207... 34 6.7 gi|16273263|ref|NP_439504.1| cytoplasmic axial filament pro... 34 6.8 gi|45198576|ref|NP_985605.1| AFR058Cp [Eremothecium gossypi... 33 7.4 gi|42629356|ref|ZP_00154903.1| hypothetical protein Hflu110... 33 7.6 gi|44400206|gb|EAJ00503.1| unknown [environmental sequence] 33 9.3 gi|37524189|ref|NP_927533.1| hypothetical protein [Photorha... 33 9.9
>gi|37546516|ref|XP_047325.4| Tho2 [Homo sapiens] Length = 1593 Score = 695 bits (1793), Expect = 0.0 Identities = 359/452 (79%), Positives = 359/452 (79%), Gaps = 93/452 (20%) Query: 11 EWIKNWEKSGRGEFLHLCRILSENKSHDSSTYRDFQQALYELSYHVIKGNLKHEQASNVL 70 EWIKNWEKSGRGEFLHLCRILSENKSHDSSTYRDFQQALYELSYHVIKGNLKHEQASNVL Sbjct: 11 EWIKNWEKSGRGEFLHLCRILSENKSHDSSTYRDFQQALYELSYHVIKGNLKHEQASNVL 70 Query: 71 SDIS-----------------------------------------YLVSDTVLKERLDPE 89 SDIS YLVSDTVLKERLDPE Sbjct: 71 SDISEFREDMPSILADVFCILDIETNCLEEKSKRDYFTQLVLACLYLVSDTVLKERLDPE 130 Query: 90 TLESLGLIKQSQQFNQKSVKIKTKLFYKQQKFNLLREENEGYAKLIAELGQDLSGSITSD 149 TLESLGLIKQSQQFNQKSVKIKTKLFYKQQKFNLLREENEGYAKLIAELGQDLSGSITSD Sbjct: 131 TLESLGLIKQSQQFNQKSVKIKTKLFYKQQKFNLLREENEGYAKLIAELGQDLSGSITSD 190 Query: 150 LILENIKSLIGCFNLDPNRVLDVILEVFECRPEHDDFFISLLESYMSMCEPQTLCHILGF 209 LILENIKSLIGCFNLDPNRVLDVILEVFECRPEHDDFFISLLESYMSMCEPQTLCHILGF Sbjct: 191 LILENIKSLIGCFNLDPNRVLDVILEVFECRPEHDDFFISLLESYMSMCEPQTLCHILGF 250 Query: 210 KFKFYQEPNGETPSSLYRVAAVLLQFNLIDLDDLYVH----------------------- 246 KFKFYQEPNGETPSSLYRVAAVLLQFNLIDLDDLYVH Sbjct: 251 KFKFYQEPNGETPSSLYRVAAVLLQFNLIDLDDLYVHLLPADNCIMDEHKREIAEAKQIV 310 Query: 247 -----------------------------PPDNQKLGLLEALLKIGDWQHAQNIMDQMPP 277 PPDNQKLGLLEALLKIGDWQHAQNIMDQMPP Sbjct: 311 RKLTMVVLSSEKMDEREKEKEKEEEKVEKPPDNQKLGLLEALLKIGDWQHAQNIMDQMPP 370 Query: 278 YYAASHKLIALAICKLIHITIEPLYRRVGVPKGAKGSPVNALQNKRAPKQAESFEDLRRD 337 YYAASHKLIALAICKLIHITIEPLYRRVGVPKGAKGSPVNALQNKRAPKQAESFEDLRRD Sbjct: 371 YYAASHKLIALAICKLIHITIEPLYRRVGVPKGAKGSPVNALQNKRAPKQAESFEDLRRD 430 Query: 338 VFNMFCYLGPHLSHDPILFAKVVRIGKSFMKE 369 VFNMFCYLGPHLSHDPILFAKVVRIGKSFMKE Sbjct: 431 VFNMFCYLGPHLSHDPILFAKVVRIGKSFMKE 462
>gi|38086124|ref|XP_356322.1| similar to Tho2 [Mus musculus] Length = 910 Score = 689 bits (1778), Expect = 0.0 Identities = 351/452 (77%), Positives = 358/452 (79%), Gaps = 93/452 (20%) Query: 11 EWIKNWEKSGRGEFLHLCRILSENKSHDSSTYRDFQQALYELSYHVIKGNLKHEQASNVL 70 EWIKNWEKSGRGEFLHLCRILSENKSHDSSTYRDFQQALYELSYHVIKGNLKHEQAS+VL Sbjct: 125 EWIKNWEKSGRGEFLHLCRILSENKSHDSSTYRDFQQALYELSYHVIKGNLKHEQASSVL 184 Query: 71 SDIS-----------------------------------------YLVSDTVLKERLDPE 89 +DIS YLVSDTVLKERLDPE Sbjct: 185 NDISEFREDMPSILADVFCILDIETNCLEEKSKRDYFTQLVLACLYLVSDTVLKERLDPE 244 Query: 90 TLESLGLIKQSQQFNQKSVKIKTKLFYKQQKFNLLREENEGYAKLIAELGQDLSGSITSD 149 TLESLGLIKQSQQFNQKSVKIKTKLFYKQQKFNLLREENEGYAKLIAELGQDLSG+ITSD Sbjct: 245 TLESLGLIKQSQQFNQKSVKIKTKLFYKQQKFNLLREENEGYAKLIAELGQDLSGNITSD 304 Query: 150 LILENIKSLIGCFNLDPNRVLDVILEVFECRPEHDDFFISLLESYMSMCEPQTLCHILGF 209 LILENIKSLIGCFNLDPNRVLDVILEVFECRPEHDDFFISLLESYMSMCEPQTLCHILGF Sbjct: 305 LILENIKSLIGCFNLDPNRVLDVILEVFECRPEHDDFFISLLESYMSMCEPQTLCHILGF 364 Query: 210 KFKFYQEPNGETPSSLYRVAAVLLQFNLIDLDDLYVH----------------------- 246 KFKFYQEP+GETPSSLYRVAAVLLQFNLIDLDDLYVH Sbjct: 365 KFKFYQEPSGETPSSLYRVAAVLLQFNLIDLDDLYVHLLPADNCIMDEYKREIVEAKQIV 424 Query: 247 -----------------------------PPDNQKLGLLEALLKIGDWQHAQNIMDQMPP 277 PPDNQKLGLLEALLK+GDWQHAQNIMDQMPP Sbjct: 425 RKLTMVVLSSEKLDERDKEKDKDDEKVEKPPDNQKLGLLEALLKVGDWQHAQNIMDQMPP 484 Query: 278 YYAASHKLIALAICKLIHITIEPLYRRVGVPKGAKGSPVNALQNKRAPKQAESFEDLRRD 337 YYAASHKLIALAICKLIHIT+EPLYRRVGVPKGAKGSPV+ALQNKRAPKQ ESFEDLRRD Sbjct: 485 YYAASHKLIALAICKLIHITVEPLYRRVGVPKGAKGSPVSALQNKRAPKQVESFEDLRRD 544 Query: 338 VFNMFCYLGPHLSHDPILFAKVVRIGKSFMKE 369 VFNMFCYLGPHLSHDPILFAKVVRIGKSFMKE Sbjct: 545 VFNMFCYLGPHLSHDPILFAKVVRIGKSFMKE 576
>gi|34876073|ref|XP_223180.2| similar to Tho2 [Rattus norvegicus] Length = 1785 Score = 650 bits (1677), Expect = 0.0 Identities = 334/461 (72%), Positives = 351/461 (76%), Gaps = 92/461 (19%) Query: 1 MAAAAVVVPAEWIKNWEKSGRGEFLHLCRILSENKSHDSSTYRDFQQALYELSYHVIKGN 60 MA+ VVVPAEWIK WEKSGRGEFL LCRILSE+KS D+ RDFQQALYELSYHVIKG Sbjct: 199 MASTTVVVPAEWIKTWEKSGRGEFLRLCRILSESKSRDTLACRDFQQALYELSYHVIKGT 258 Query: 61 LKHEQASNVLSDIS-----------------------------------------YLVSD 79 LK EQAS+VL+DIS YLVSD Sbjct: 259 LKPEQASSVLNDISEFREDIPFILADIFCILDIETNCLEEKSKRDHFTQLILACLYLVSD 318 Query: 80 TVLKERLDPETLESLGLIKQSQQFNQKSVKIKTKLFYKQQKFNLLREENEGYAKLIAELG 139 TVLKERLDPETLESLGLIKQSQQFNQKSVKIKTKLFYKQQKFNLLREENEGYAKLI ELG Sbjct: 319 TVLKERLDPETLESLGLIKQSQQFNQKSVKIKTKLFYKQQKFNLLREENEGYAKLIVELG 378 Query: 140 QDLSGSITSDLILENIKSLIGCFNLDPNRVLDVILEVFECRPEHDDFFISLLESYMSMCE 199 QDLSGSITSDLILE +KSLIGCFNLDPNRVLD+ILEVFECRPEH DFFISLL++YMSMCE Sbjct: 379 QDLSGSITSDLILEILKSLIGCFNLDPNRVLDIILEVFECRPEHHDFFISLLQAYMSMCE 438 Query: 200 PQTLCHILGFKFKFYQEPNGETPSSLYRVAAVLLQFNLIDLDDLYVH------------- 246 PQTLCHILGFKFKFYQEPNGETPSSLYR AAVLLQFNL+DLDDLYVH Sbjct: 439 PQTLCHILGFKFKFYQEPNGETPSSLYRAAAVLLQFNLLDLDDLYVHLLPADSCIMNEYK 498 Query: 247 --------------------------------------PPDNQKLGLLEALLKIGDWQHA 268 PDNQKLGLLEALL IGDWQHA Sbjct: 499 REIVEAKQIVKKLTMVVLPSEKSDEREKEKKKDDKVEKAPDNQKLGLLEALLIIGDWQHA 558 Query: 269 QNIMDQMPPYYAASHKLIALAICKLIHITIEPLYRRVGVPKGAKGSPVNALQNKRAPKQA 328 Q+IMD+MPPYYA SHK+IALAIC LIHITIEP+YRRVGVPKGAKGSPV+ALQNK+APKQA Sbjct: 559 QSIMDRMPPYYATSHKVIALAICNLIHITIEPIYRRVGVPKGAKGSPVSALQNKKAPKQA 618 Query: 329 ESFEDLRRDVFNMFCYLGPHLSHDPILFAKVVRIGKSFMKE 369 ESFEDLRRDVF+MFCYLGPHLSHDPILFAKVVRIGKSFMKE Sbjct: 619 ESFEDLRRDVFSMFCYLGPHLSHDPILFAKVVRIGKSFMKE 659
>gi|38080348|ref|XP_144450.2| similar to Tho2 [Mus musculus] Length = 1589 Score = 639 bits (1649), Expect = 0.0 Identities = 332/461 (72%), Positives = 347/461 (75%), Gaps = 92/461 (19%) Query: 1 MAAAAVVVPAEWIKNWEKSGRGEFLHLCRILSENKSHDSSTYRDFQQALYELSYHVIKGN 60 M + VVVPAEWIK WEKSGRGEFL LCRILSE+KS D+ +RDFQQALYELSYHVIKG Sbjct: 3 MTSTTVVVPAEWIKTWEKSGRGEFLRLCRILSESKSRDTFAWRDFQQALYELSYHVIKGT 62 Query: 61 LKHEQASNVLSDIS-----------------------------------------YLVSD 79 LK EQASNVL+DIS YLVSD Sbjct: 63 LKPEQASNVLNDISEFREDIPFILADIFCILDIETNCLEEKSKRDHFTQLILACLYLVSD 122 Query: 80 TVLKERLDPETLESLGLIKQSQQFNQKSVKIKTKLFYKQQKFNLLREENEGYAKLIAELG 139 TVLKERLDPETL SLGLIKQSQQFNQKSVKIKTKLFYKQQKFNLLREENEGYAKLI ELG Sbjct: 123 TVLKERLDPETLGSLGLIKQSQQFNQKSVKIKTKLFYKQQKFNLLREENEGYAKLIVELG 182 Query: 140 QDLSGSITSDLILENIKSLIGCFNLDPNRVLDVILEVFECRPEHDDFFISLLESYMSMCE 199 QDLSG+ITSDLILE +KSLIGCFNLDPNRVLD+ILEVFECRPEH DFFISLLE+YMSMCE Sbjct: 183 QDLSGNITSDLILEILKSLIGCFNLDPNRVLDIILEVFECRPEHHDFFISLLEAYMSMCE 242 Query: 200 PQTLCHILGFKFKFYQEPNGETPSSLYRVAAVLLQFNLIDLDDLYVH------------- 246 P TLCHILGFKFKFYQEPNGETPSSLYR AAVLLQFNLIDLDDLYVH Sbjct: 243 PHTLCHILGFKFKFYQEPNGETPSSLYRAAAVLLQFNLIDLDDLYVHLLPADSCIVSEYK 302 Query: 247 --------------------------------------PPDNQKLGLLEALLKIGDWQHA 268 PDNQKLGLLEALL IGDW+HA Sbjct: 303 REIVEAKQIVKKLTMVVLPSEKSDEREKEKKKDDKVEKAPDNQKLGLLEALLIIGDWKHA 362 Query: 269 QNIMDQMPPYYAASHKLIALAICKLIHITIEPLYRRVGVPKGAKGSPVNALQNKRAPKQA 328 Q+IMD MPPYYA SHK+IALAIC LIHITIEP+YRRVGVPKGAKGSPVNALQNK+APKQA Sbjct: 363 QSIMDHMPPYYATSHKVIALAICNLIHITIEPIYRRVGVPKGAKGSPVNALQNKKAPKQA 422 Query: 329 ESFEDLRRDVFNMFCYLGPHLSHDPILFAKVVRIGKSFMKE 369 ESFEDLRRDVF+MF YLGPHLSHDPILFAKVVRIGKSFMKE Sbjct: 423 ESFEDLRRDVFSMFYYLGPHLSHDPILFAKVVRIGKSFMKE 463
>gi|34932840|ref|XP_233081.2| similar to Tho2 [Rattus norvegicus] Length = 1663 Score = 581 bits (1498), Expect = e-165 Identities = 290/347 (83%), Positives = 294/347 (84%), Gaps = 52/347 (14%) Query: 75 YLVSDTVLKERLDPETLESLGLIKQSQQFNQKSVKIKTKLFYKQQKFNLLREENEGYAKL 134 YLVSDTVLKERLDPETLESLGLIKQSQQFNQKSVKIKTKLFYKQQKFNLLREENEGYAKL Sbjct: 188 YLVSDTVLKERLDPETLESLGLIKQSQQFNQKSVKIKTKLFYKQQKFNLLREENEGYAKL 247 Query: 135 IAELGQDLSGSITSDLILENIKSLIGCFNLDPNRVLDVILEVFECRPEHDDFFISLLESY 194 IAELGQDLSG+ITSDLILENIKSLIGCFNLDPNRVLDVILEVFECRPEHDDFFISLLESY Sbjct: 248 IAELGQDLSGTITSDLILENIKSLIGCFNLDPNRVLDVILEVFECRPEHDDFFISLLESY 307 Query: 195 MSMCEPQTLCHILGFKFKFYQEPNGETPSSLYRVAAVLLQFNLIDLDDLYVH-------- 246 MSMCEPQTLCHILGFKFKFYQEP+GETPSSLYRVAAVLLQFNLIDLDDLYVH Sbjct: 308 MSMCEPQTLCHILGFKFKFYQEPSGETPSSLYRVAAVLLQFNLIDLDDLYVHLLPADNCI 367 Query: 247 --------------------------------------------PPDNQKLGLLEALLKI 262 PPDNQKLGLLEALLKI Sbjct: 368 MDEYKREIVEAKQIVRKLTMVVLSSEKLDERDKEKDKDDEKVEKPPDNQKLGLLEALLKI 427 Query: 263 GDWQHAQNIMDQMPPYYAASHKLIALAICKLIHITIEPLYRRVGVPKGAKGSPVNALQNK 322 GDWQHAQNIMDQMPPYYAASHKLIALAICKLIHIT+EPLYRRVGVPKGAKGSPV+ALQNK Sbjct: 428 GDWQHAQNIMDQMPPYYAASHKLIALAICKLIHITVEPLYRRVGVPKGAKGSPVSALQNK 487 Query: 323 RAPKQAESFEDLRRDVFNMFCYLGPHLSHDPILFAKVVRIGKSFMKE 369 RAPKQ ESFEDLRRDVFNMFCYLGPHLSHDPILFAKVVRIGKSFMKE Sbjct: 488 RAPKQVESFEDLRRDVFNMFCYLGPHLSHDPILFAKVVRIGKSFMKE 534
>gi|41702296|sp|Q8NI27|THO2_HUMAN THO complex subunit 2 (Tho2) gi|20799318|gb|AAM28436.1| Tho2 [Homo sapiens] Length = 1478 Score = 578 bits (1490), Expect = e-164 Identities = 293/346 (84%), Positives = 293/346 (84%), Gaps = 52/346 (15%) Query: 76 LVSDTVLKERLDPETLESLGLIKQSQQFNQKSVKIKTKLFYKQQKFNLLREENEGYAKLI 135 VSDTVLKERLDPETLESLGLIKQSQQFNQKSVKIKTKLFYKQQKFNLLREENEGYAKLI Sbjct: 2 FVSDTVLKERLDPETLESLGLIKQSQQFNQKSVKIKTKLFYKQQKFNLLREENEGYAKLI 61 Query: 136 AELGQDLSGSITSDLILENIKSLIGCFNLDPNRVLDVILEVFECRPEHDDFFISLLESYM 195 AELGQDLSGSITSDLILENIKSLIGCFNLDPNRVLDVILEVFECRPEHDDFFISLLESYM Sbjct: 62 AELGQDLSGSITSDLILENIKSLIGCFNLDPNRVLDVILEVFECRPEHDDFFISLLESYM 121 Query: 196 SMCEPQTLCHILGFKFKFYQEPNGETPSSLYRVAAVLLQFNLIDLDDLYVH--------- 246 SMCEPQTLCHILGFKFKFYQEPNGETPSSLYRVAAVLLQFNLIDLDDLYVH Sbjct: 122 SMCEPQTLCHILGFKFKFYQEPNGETPSSLYRVAAVLLQFNLIDLDDLYVHLLPADNCIM 181 Query: 247 -------------------------------------------PPDNQKLGLLEALLKIG 263 PPDNQKLGLLEALLKIG Sbjct: 182 DEHKREIAEAKQIVRKLTMVVLSSEKMDEREKEKEKEEEKVEKPPDNQKLGLLEALLKIG 241 Query: 264 DWQHAQNIMDQMPPYYAASHKLIALAICKLIHITIEPLYRRVGVPKGAKGSPVNALQNKR 323 DWQHAQNIMDQMPPYYAASHKLIALAICKLIHITIEPLYRRVGVPKGAKGSPVNALQNKR Sbjct: 242 DWQHAQNIMDQMPPYYAASHKLIALAICKLIHITIEPLYRRVGVPKGAKGSPVNALQNKR 301 Query: 324 APKQAESFEDLRRDVFNMFCYLGPHLSHDPILFAKVVRIGKSFMKE 369 APKQAESFEDLRRDVFNMFCYLGPHLSHDPILFAKVVRIGKSFMKE Sbjct: 302 APKQAESFEDLRRDVFNMFCYLGPHLSHDPILFAKVVRIGKSFMKE 347
>gi|27802720|emb|CAD60810.1| SI:bZ1O18.2 (novel protein similar to human THO complex 2 (THOC2)) [Danio rerio] Length = 1430 Score = 500 bits (1288), Expect = e-140 Identities = 246/376 (65%), Positives = 290/376 (77%), Gaps = 43/376 (11%) Query: 35 KSHDSSTYRDFQQALYELSYHVIKGNLKHEQASNVLSDISYL------------------ 76 KS +D Q A YEL +H I+G+LK + A+++L+D+ L Sbjct: 10 KSSGHELVKDLQTAFYELCWHAIQGSLKVDVAASLLADVMELRDDMPSILADVLCILDIE 69 Query: 77 -----------------------VSDTVLKERLDPETLESLGLIKQSQQFNQKSVKIKTK 113 + D VLKERLDPETLESLGLIKQ+QQFNQK VKIKTK Sbjct: 70 TGCLEEKHKRDLFTQLVGACLICIPDGVLKERLDPETLESLGLIKQAQQFNQKIVKIKTK 129 Query: 114 LFYKQQKFNLLREENEGYAKLIAELGQDLSGSITSDLILENIKSLIGCFNLDPNRVLDVI 173 LFYKQQKFNLLREENEGYAKLI ELGQDL+G++TS ++LENIKSLIGCFNLDPNRVLD+I Sbjct: 130 LFYKQQKFNLLREENEGYAKLITELGQDLTGNLTSHIVLENIKSLIGCFNLDPNRVLDII 189 Query: 174 LEVFECRPEHDDFFISLLESYMSMCEPQTLCHILGFKFKFYQEPNGETPSSLYRVAAVLL 233 LEV+ECR + D+FFI L++SYM CE QTLCH+LGFKFKF+QEPNGETPSSLY +AA LL Sbjct: 190 LEVYECRSDQDEFFIPLIKSYM--CEHQTLCHMLGFKFKFHQEPNGETPSSLYHIAAALL 247 Query: 234 QFNLIDLDDLYVHPPDNQKLGLLEALLKIGDWQHAQNIMDQMPPYYAASHKLIALAICKL 293 Q +LI L+DLYVHPPDNQKLGLLEALL+I DWQH+Q+IMDQ+P +YA SHK IA+A+C+L Sbjct: 248 QHDLIALEDLYVHPPDNQKLGLLEALLRISDWQHSQSIMDQLPAFYATSHKAIAVALCQL 307 Query: 294 IHITIEPLYRRVGVPKGAKGSPVNALQNKRAPKQAESFEDLRRDVFNMFCYLGPHLSHDP 353 +H+ I+PLYRR GVPKGAKGS + LQNK AP AE+F+DL RDVF M CYLGPHLSHDP Sbjct: 308 LHLIIDPLYRRAGVPKGAKGSLITPLQNKHAPHPAENFDDLSRDVFTMLCYLGPHLSHDP 367 Query: 354 ILFAKVVRIGKSFMKE 369 ILFAK+VR+GKSFMKE Sbjct: 368 ILFAKMVRLGKSFMKE 383
>gi|38087092|ref|XP_359343.1| similar to SI:bZ1O18.2 (novel protein similar to human THO complex 2 (THOC2)) [Mus musculus] Length = 375 Score = 400 bits (1028), Expect = e-110 Identities = 202/246 (82%), Positives = 205/246 (83%), Gaps = 41/246 (16%) Query: 11 EWIKNWEKSGRGEFLHLCRILSENKSHDSSTYRDFQQALYELSYHVIKGNLKHEQASNVL 70 EWIKNWEKSGRGEFLHLCRILSENKSHDSSTYRDFQQALYELSYHVIKGNLKHEQAS+VL Sbjct: 125 EWIKNWEKSGRGEFLHLCRILSENKSHDSSTYRDFQQALYELSYHVIKGNLKHEQASSVL 184 Query: 71 SDIS-----------------------------------------YLVSDTVLKERLDPE 89 +DIS YLVSDTVLKERLDPE Sbjct: 185 NDISEFREDMPSILADVFCILDIETNCLEEKSKRDYFTQLVLACLYLVSDTVLKERLDPE 244 Query: 90 TLESLGLIKQSQQFNQKSVKIKTKLFYKQQKFNLLREENEGYAKLIAELGQDLSGSITSD 149 TLESLGLIKQSQQFNQKSVKIKTKLFYKQQKFNLLREENEGYAKLIAELGQDLSG+ITSD Sbjct: 245 TLESLGLIKQSQQFNQKSVKIKTKLFYKQQKFNLLREENEGYAKLIAELGQDLSGNITSD 304 Query: 150 LILENIKSLIGCFNLDPNRVLDVILEVFECRPEHDDFFISLLESYMSMCEPQTLCHILGF 209 LILENIKSLIGCFNLDPNRVLDVILEVFECRPEHDDFFISLLESYMSMCEPQTLCHILGF Sbjct: 305 LILENIKSLIGCFNLDPNRVLDVILEVFECRPEHDDFFISLLESYMSMCEPQTLCHILGF 364 Query: 210 KFKFYQ 215 KFKFYQ Sbjct: 365 KFKFYQ 370
>gi|31222868|ref|XP_317233.1| ENSANGP00000011945 [Anopheles gambiae] gi|21300223|gb|EAA12368.1| ENSANGP00000011945 [Anopheles gambiae str. PEST] Length = 1606 Score = 253 bits (646), Expect = 5e-66 Identities = 162/465 (34%), Positives = 240/465 (51%), Gaps = 110/465 (23%) Query: 10 AEWIKNWEKSGRGEFLHLCRILSENKSHD-----SSTYRDFQQALYELSYHVIKGNLKHE 64 AE K WE+SG+ EFL C+ L +++ +A+YEL I G +K E Sbjct: 27 AEVWKLWERSGKTEFLKHCKGLLKDEQQSPLFGKGERKNGISRAIYELVSRGIHGQVKKE 86 Query: 65 QASNVLSDISYL-----------------------------------------------V 77 +L ++ L V Sbjct: 87 SVLQMLGELVSLHSDVPSILLDVFGIFDAETATAGSGDGAPPSEERTNFCYIAKESERFV 146 Query: 78 SDTVLKERLDPETLESLGLIKQSQQFNQKSVKIKTKLFYKQQKFNLLREENEGYAKLIAE 137 S+ +LKERL+ +TL+ +G IK ++ F + +K+KTKL+YKQ++FNL REE+EGYAKL+ E Sbjct: 147 SEKLLKERLEIDTLQDVGTIK-NRSFYTRFIKVKTKLYYKQRRFNLFREESEGYAKLMTE 205 Query: 138 LGQDLSG-SITSDLILENIKSLIGCFNLDPNRVLDVILEVFECRPEHDDFFISLLESYMS 196 L Q+ + ++T +LE IKSLIGCFNLDPNRVLD+ILE FE RPE D FI LL++Y++ Sbjct: 206 LNQEFNQETMTVQNVLEIIKSLIGCFNLDPNRVLDIILESFEARPEQDRIFIPLLQAYIN 265 Query: 197 MCEPQTLCHILGFKFKFYQEPNGETPSSLYRVAAVLLQFNLIDLDDLY--VHPPD----- 249 + +C +LG+K++++ + +TP SL++V A+LLQ +I LDD+Y ++PPD Sbjct: 266 --DGNIICEVLGYKYRYFAD--AQTPGSLFKVTALLLQHGVIKLDDIYAWLNPPDKSIVA 321 Query: 250 ------------------------------------------NQKLGLLEALLKIGDWQH 267 NQK GL EALL IGDW Sbjct: 322 DWEAEIAQAKEYVRKLNVILTNKDKEPEQEPEFETAPEKYALNQKWGLCEALLTIGDWNT 381 Query: 268 AQNIMDQMPPYYAASHKLIALAICKLIHITIEPLYR-RVGVPKGAKGSPVN--ALQNKRA 324 AQ ++ ++P H+ IA A+C+L+H+ IEP+YR + +P KG ++ + NK A Sbjct: 382 AQQLIRKLPDQSVMVHEPIARALCRLLHMIIEPVYRLKCALPANIKGRAISMYGVLNKLA 441 Query: 325 PKQAESFEDLRRDVFNMFCYLGPHLSHDPILFAKVVRIGKSFMKE 369 P S LR F MF LGP L +D +L K++R+ + + + Sbjct: 442 PPPVTSLTKLRLHAFPMFVALGPSLHYDSVLLYKLLRLMRVILTD 486
>gi|24581012|ref|NP_722763.1| CG31671-PA [Drosophila melanogaster] gi|22945437|gb|AAF51302.2| CG31671-PA [Drosophila melanogaster] Length = 1641 Score = 213 bits (541), Expect = 8e-54 Identities = 133/371 (35%), Positives = 207/371 (55%), Gaps = 64/371 (17%) Query: 56 VIKGNLKHEQAS--NVLSDISYLVSDTVLKERLDPETLESLGLIKQSQQFNQKSVKIKTK 113 +I L+ E+ + ++ D+ ++ +++LKERL+ +TL+ G++K ++ F K +K+KTK Sbjct: 155 LITDGLQEERHAFVQLVKDLDRVIPESLLKERLEIDTLQEAGIVK-NKSFYSKFIKVKTK 213 Query: 114 LFYKQQKFNLLREENEGYAKLIAELGQDLSGSITSDLILENIKSLIGCFNLDPNRVLDVI 173 L+YKQ++FNL REE+EG+AKLI EL Q+ + T + I++ IKSLIGCFNLDPNRVLD+I Sbjct: 214 LYYKQRRFNLFREESEGFAKLITELNQEFDENTTPESIMDIIKSLIGCFNLDPNRVLDII 273 Query: 174 LEVFECRPEHDDFFISLLESYMSMCEPQTLCHILGFKFKFYQEPNGETPSSLYRVAAVLL 233 +E FE RP+ + FI LL SYM +C +LG+KF +++ TP SLY V A+LL Sbjct: 274 IESFETRPDRWNLFIPLLRSYMPT--GAIICEVLGYKFCHFKD--SRTPRSLYHVCALLL 329 Query: 234 QFNLIDLDDLYV--HPPDN-----------------QKLGLL------------------ 256 + +I L+D+YV P D +KL L+ Sbjct: 330 KHGVIALNDVYVWLTPNDGSIKADWEEDLADAREMVRKLNLIQTNKKEDEKDPPPPPSVK 389 Query: 257 ----------------EALLKIGDWQHAQNIMDQMPPYYAASHKLIALAICKLIHITIEP 300 EALLK+GDW++A I+ ++P + IA AI LIH+++E Sbjct: 390 KFNEEKYNANQKFGLCEALLKVGDWENAYKIIQKLPEQAVVLQEPIARAIADLIHLSVEN 449 Query: 301 LYRR--VGVPKGAKGSPVNALQNKR--APKQAESFEDLRRDVFNMFCYLGPHLSHDPILF 356 +Y + P G + S ++ + A QA+ F DLR+ + M LGP + +D +L Sbjct: 450 IYYKKCFKAPAGRRPSRNRLYEDSKLVAKMQAKEFGDLRKYTWPMANVLGPAMHYDTVLM 509 Query: 357 AKVVRIGKSFM 367 K++RI + + Sbjct: 510 YKLIRIMRKLV 520
>gi|39584988|emb|CAE64412.1| Hypothetical protein CBG09105 [Caenorhabditis briggsae] Length = 1427 Score = 134 bits (338), Expect = 3e-30 Identities = 76/170 (44%), Positives = 107/170 (62%), Gaps = 10/170 (5%) Query: 75 YLVSDTVLKERLDPETLESLGLIKQSQQFNQKSVKIKTKLFYKQQKFNLLREENEGYAKL 134 +L+++T++ E + L+ + + N+ +++KTKL++KQ KFNL REE+EGY+KL Sbjct: 71 HLLTNTIIPEEILRLELDCC----KRDEHNKGLIRLKTKLYFKQAKFNLFREESEGYSKL 126 Query: 135 IAELGQDLSGSITSD----LILENIKSLIGCFNLDPNRVLDVILEVFECRPEHDDFFISL 190 I EL + D +I + SLIG FNLDPNRV D+ILEVFE P+ FFISL Sbjct: 127 ITELMESSENCSAHDDFAKVIKHRVLSLIGQFNLDPNRVTDIILEVFEIFPKQKMFFISL 186 Query: 191 LESYMSMCEPQTLCHILGFKFKFYQEPNGETPSSLYRVAAVLLQFNLIDL 240 L+ + P+ LC ILGFK+ FYQ +TP SLY + A L+Q +IDL Sbjct: 187 LKEIDVV--PEYLCAILGFKYTFYQSEKKKTPYSLYVLTAYLIQHEMIDL 234
Score = 63.2 bits (152), Expect = 1e-08 Identities = 40/127 (31%), Positives = 73/127 (57%), Gaps = 10/127 (7%) Query: 250 NQKLGLLEALLKIGDWQHAQNIMDQMPPYYAA-SHKLIALAICKLIHITIEPLYRR---- 304 NQKLGL ALL+ G+W+ AQ+++D++P YYA + + A+CK+I +I+ YR+ Sbjct: 319 NQKLGLACALLENGNWKQAQHLIDRLPEYYAVQASPRVCRALCKIIERSIDAFYRKSCSL 378 Query: 305 --VGVPKGAKGSPVNALQNKRAPKQAESFEDLRRDVFNMFCYLGPHLSHDPILFAKVVRI 362 G +K ++ + N P +S++DL + V + YLGP L++ K++R+ Sbjct: 379 NLFGELTKSKKPVLDDMGNGLKP--IDSWDDLGQLV-TILAYLGPRLAYRATTNIKILRL 435 Query: 363 GKSFMKE 369 ++ ++ Sbjct: 436 LTAYYQK 442
>gi|34906976|ref|NP_914835.1| P0413C03.11 [Oryza sativa (japonica cultivar-group)] gi|19386755|dbj|BAB86136.1| P0413C03.11 [Oryza sativa (japonica cultivar-group)] Length = 1729 Score = 117 bits (292), Expect = 5e-25 Identities = 72/186 (38%), Positives = 103/186 (55%), Gaps = 36/186 (19%) Query: 74 SYLVSDTVLKERLDPETLESLGLIK-QSQQFNQKSVKIKTKLFYKQQKFNLLREENEGYA 132 S L++ +L+ER + E L + L K + Q K V++ T+L Y+Q KFNLLREE+EGYA Sbjct: 113 SSLIAPRLLQERCEEEFLWEVELSKSKGQDLKAKEVRVNTRLLYQQTKFNLLREESEGYA 172 Query: 133 KLIA---ELGQDLSGSITSDLILENIKSLIGCFNLDPNRVLDVILEVFECRPEHDDFFIS 189 KL+ ++G DL+ +S + + IKSLIG F+LDPNRV D+ Sbjct: 173 KLVTLLCQIGSDLACQNSSSVTMSIIKSLIGHFDLDPNRVFDI----------------- 215 Query: 190 LLESYMSMCEPQTLCHILGFKFKFYQ--EPNGETPSSLYRVAAVLLQFNLIDLDDLYVH- 246 ILGFKF++YQ + N P L+R+AA+L++ IDLD LY H Sbjct: 216 -----------SHAAQILGFKFQYYQRLDVNSTVPPGLFRIAALLVKSGFIDLDSLYAHL 264 Query: 247 -PPDNQ 251 P D++ Sbjct: 265 LPNDDE 270
Score = 48.5 bits (114), Expect = 3e-04 Identities = 34/122 (27%), Positives = 57/122 (46%), Gaps = 10/122 (8%) Query: 250 NQKLGLLEALLKIGDWQHAQNIMDQMPPYYAASHKLIALAICKLIHITIEPLYRRV---- 305 NQKLGLL L + DW HAQ + +++ H I ++ +LI +I +Y + Sbjct: 334 NQKLGLLLGFLSVHDWDHAQLLFERLARLNPVEHVEICDSLFRLIERSISSVYDIIFQTH 393 Query: 306 -GVPKGAKGSPVNALQNKRAPKQAESFEDLRRDVFNMFCYLGPHLSHDPILFAKVVRIGK 364 +P+ +PV + + D ++ F M GP+L + LF KV R+ K Sbjct: 394 YKMPR----NPV-YMMDTSPSSSQSFSVDPPKEFFQMLSACGPYLHRNTQLFQKVCRVLK 448 Query: 365 SF 366 ++ Sbjct: 449 AY 450
>gi|42562307|ref|NP_173871.3| expressed protein [Arabidopsis thaliana] Length = 1781 Score = 116 bits (291), Expect = 7e-25 Identities = 72/185 (38%), Positives = 105/185 (56%), Gaps = 12/185 (6%) Query: 74 SYLVSDTVLKERLDPETLESLGLIK-QSQQFNQKSVKIKTKLFYKQQKFNLLREENEGYA 132 S V + +ER + E L ++K ++Q K V++ T+L Y+Q KFNLLREE+EGYA Sbjct: 108 SQTVPQRLFQERCEEEFLWEADMVKIKAQDLKGKEVRLNTRLLYQQTKFNLLREESEGYA 167 Query: 133 KLIAEL--GQDLSGSITSDLILENIKSLIGCFNLDPNRVLDVILEVFECRPEHDDFFISL 190 KL L G S S + IKSLIG F+LDPNRV D++L+ FE ++D F Sbjct: 168 KLATLLCRGSASSSHNASAATMGIIKSLIGHFDLDPNRVFDIVLDCFELEQDYDTFL--- 224 Query: 191 LESYMSMCEPQTLCHILGFKFKFYQ--EPNGETPSSLYRVAAVLLQFNLIDLDDLYVH-- 246 + + + ILGFKF++YQ E N P LY++ A+L++ I+L+ +Y H Sbjct: 225 --NLIPIFPKSHASQILGFKFQYYQRLEVNSPVPVGLYKLTALLVKEEFINLESIYAHLL 282 Query: 247 PPDNQ 251 P D + Sbjct: 283 PKDEE 287
Score = 57.0 bits (136), Expect = 8e-07 Identities = 34/123 (27%), Positives = 58/123 (47%), Gaps = 8/123 (6%) Query: 249 DNQKLGLLEALLKIGDWQHAQNIMDQMPPYYAASHKLIALAICKLIHITIEPLYR----- 303 +NQ LGLL L + DW HA + +++ P +H I + +LI +I YR Sbjct: 351 NNQTLGLLNGFLSVDDWYHANILFERLAPLNPVAHDQICSGLFRLIEKSITHSYRIARQT 410 Query: 304 RVGVPKGAKGSPVNALQNKRAPKQAESFEDLRRDVFNMFCYLGPHLSHDPILFAKVVRIG 363 R A + N A + ++ DL ++VF M +GP+L + L K+ R+ Sbjct: 411 RFQSSSSASTVKLTPTANTTANR---TYLDLPKEVFQMLVTVGPYLYRNTQLLQKICRVL 467 Query: 364 KSF 366 +++ Sbjct: 468 RAY 470
>gi|17552208|ref|NP_498392.1| tho2 (164.4 kD) (3H463) [Caenorhabditis elegans] gi|14573810|gb|AAB47593.3| Hypothetical protein C16A3.8 [Caenorhabditis elegans] Length = 1437 Score = 116 bits (290), Expect = 8e-25 Identities = 69/170 (40%), Positives = 104/170 (61%), Gaps = 11/170 (6%) Query: 76 LVSDTVLKERLDPETLESLGLIKQSQQFNQKSVKIKTKLFYKQQKFNLLREENEGYAKLI 135 L+++T++ E + L+ + ++ +++KTK+++KQ KFNL REE+EGY+KL+ Sbjct: 72 LLTNTIIPEEILRLELDCF----KKDDHSKALIRLKTKVYFKQAKFNLFREESEGYSKLV 127 Query: 136 AELGQDLSGSITSD----LILENIKSLIGCFNLDPNRVLDVILEVFECRPEHDDFFISLL 191 EL + S + ++ + SLIG FNLDPNRV DVILEVFE P FI+LL Sbjct: 128 TELMEAAESSANENEHAKILKHRVLSLIGQFNLDPNRVTDVILEVFENFPRQKLLFIALL 187 Query: 192 ESYMSMCEPQTLCHILGFKFKFYQ-EPNGETPSSLYRVAAVLLQFNLIDL 240 + + + LC +LGFKF FYQ + +TP SLY + A L+Q +ID+ Sbjct: 188 KEIDVVRD--YLCALLGFKFTFYQSDKKKKTPYSLYVLTASLIQHEMIDM 235
Score = 57.4 bits (137), Expect = 5e-07 Identities = 42/128 (32%), Positives = 72/128 (56%), Gaps = 12/128 (9%) Query: 250 NQKLGLLEALLKIGDWQHAQNIMDQMPPYYA--ASHKLIALAICKLIHITIEPLYRR--- 304 NQKLGL ALL+ G+W+ AQ ++D++P YYA AS +L A+CK+I +I Y++ Sbjct: 326 NQKLGLTCALLESGNWKQAQMLIDRLPEYYAVQASPRL-CRALCKIIEKSINDFYKKNCS 384 Query: 305 ---VGVPKGAKGSPVNALQNKRAPKQAESFEDLRRDVFNMFCYLGPHLSHDPILFAKVVR 361 G + ++ + N P ES+EDL + + ++ YLGP ++ K+VR Sbjct: 385 LNLFGDLIKSTKPVLDDMGNGLRP--IESWEDLGK-LSSVLAYLGPRIAFRASTNIKIVR 441 Query: 362 IGKSFMKE 369 + ++ ++ Sbjct: 442 LLTAYYRK 449
>gi|27311827|gb|AAO00879.1| F5A9.22 [Arabidopsis thaliana] Length = 681 Score = 116 bits (290), Expect = 9e-25 Identities = 72/185 (38%), Positives = 105/185 (56%), Gaps = 12/185 (6%) Query: 74 SYLVSDTVLKERLDPETLESLGLIK-QSQQFNQKSVKIKTKLFYKQQKFNLLREENEGYA 132 S V + +ER + E L ++K ++Q K V++ T+L Y+Q KFNLLREE+EGYA Sbjct: 108 SQTVPQRLFQERCEEEFLWEADMVKIKAQDLKGKEVRLNTRLLYQQTKFNLLREESEGYA 167 Query: 133 KLIAEL--GQDLSGSITSDLILENIKSLIGCFNLDPNRVLDVILEVFECRPEHDDFFISL 190 KL L G S S + IKSLIG F+LDPNRV D++L+ FE ++D F Sbjct: 168 KLATLLCRGSASSSHNASAATMGIIKSLIGHFDLDPNRVFDIVLDCFELEQDYDTFL--- 224 Query: 191 LESYMSMCEPQTLCHILGFKFKFYQ--EPNGETPSSLYRVAAVLLQFNLIDLDDLYVH-- 246 + + + ILGFKF++YQ E N P LY++ A+L++ I+L+ +Y H Sbjct: 225 --NLIPIFPKSHASQILGFKFQYYQRLEVNSPVPVGLYKLTALLVKEEFINLESIYAHLL 282 Query: 247 PPDNQ 251 P D + Sbjct: 283 PKDEE 287
Score = 56.6 bits (135), Expect = 8e-07 Identities = 34/123 (27%), Positives = 58/123 (47%), Gaps = 8/123 (6%) Query: 249 DNQKLGLLEALLKIGDWQHAQNIMDQMPPYYAASHKLIALAICKLIHITIEPLYR----- 303 +NQ LGLL L + DW HA + +++ P +H I + +LI +I YR Sbjct: 351 NNQTLGLLNGFLSVDDWYHANILFERLAPLNPVAHDQICSGLFRLIEKSITHSYRIARQT 410 Query: 304 RVGVPKGAKGSPVNALQNKRAPKQAESFEDLRRDVFNMFCYLGPHLSHDPILFAKVVRIG 363 R A + N A + ++ DL ++VF M +GP+L + L K+ R+ Sbjct: 411 RFQSSSSASTVKLTPTANTTANR---TYLDLPKEVFQMLVTVGPYLYRNTQLLQKICRVL 467 Query: 364 KSF 366 +++ Sbjct: 468 RAY 470
>gi|9945085|gb|AAG03122.1| F5A9.21 [Arabidopsis thaliana] Length = 1705 Score = 111 bits (278), Expect = 2e-23 Identities = 65/159 (40%), Positives = 93/159 (58%), Gaps = 11/159 (6%) Query: 99 QSQQFNQKSVKIKTKLFYKQQKFNLLREENEGYAKLIAEL--GQDLSGSITSDLILENIK 156 ++Q K V++ T+L Y+Q KFNLLREE+EGYAKL L G S S + IK Sbjct: 39 KAQDLKGKEVRLNTRLLYQQTKFNLLREESEGYAKLATLLCRGSASSSHNASAATMGIIK 98 Query: 157 SLIGCFNLDPNRVLDVILEVFECRPEHDDFFISLLESYMSMCEPQTLCHILGFKFKFYQ- 215 SLIG F+LDPNRV D++L+ FE ++D F + + + ILGFKF++YQ Sbjct: 99 SLIGHFDLDPNRVFDIVLDCFELEQDYDTFL-----NLIPIFPKSHASQILGFKFQYYQR 153 Query: 216 -EPNGETPSSLYRVAAVLLQFNLIDLDDLYVH--PPDNQ 251 E N P LY++ A+L++ I+L+ +Y H P D + Sbjct: 154 LEVNSPVPVGLYKLTALLVKEEFINLESIYAHLLPKDEE 192
Score = 57.0 bits (136), Expect = 6e-07 Identities = 34/123 (27%), Positives = 58/123 (47%), Gaps = 8/123 (6%) Query: 249 DNQKLGLLEALLKIGDWQHAQNIMDQMPPYYAASHKLIALAICKLIHITIEPLYR----- 303 +NQ LGLL L + DW HA + +++ P +H I + +LI +I YR Sbjct: 256 NNQTLGLLNGFLSVDDWYHANILFERLAPLNPVAHDQICSGLFRLIEKSITHSYRIARQT 315 Query: 304 RVGVPKGAKGSPVNALQNKRAPKQAESFEDLRRDVFNMFCYLGPHLSHDPILFAKVVRIG 363 R A + N A + ++ DL ++VF M +GP+L + L K+ R+ Sbjct: 316 RFQSSSSASTVKLTPTANTTANR---TYLDLPKEVFQMLVTVGPYLYRNTQLLQKICRVL 372 Query: 364 KSF 366 +++ Sbjct: 373 RAY 375
>gi|4691407|emb|CAA91079.2| SPAC22F3.14c [Schizosaccharomyces pombe] Length = 1621 Score = 84.7 bits (208), Expect = 3e-15 Identities = 61/220 (27%), Positives = 110/220 (50%), Gaps = 47/220 (21%) Query: 82 LKERLDPETLESLGLIKQSQQFNQKSVKIKTKLFYKQQKFNLLREENEGYAKLIAELGQD 141 L RLD + LE++ ++ N+K V+ T L Y+Q+KFNLLREE+EG++ L+ Sbjct: 122 LLSRLDCKFLENINVVPNGDFLNRKIVRTNTSLLYRQKKFNLLREESEGFSHLMINFFDA 181 Query: 142 LS----GSITSDLIL----ENIKSLIGCFNLDPNRVLDVILEVF-ECRPEHDDFFISLL- 191 L+ S+ D ++ ++I S IG F+LDPN+VLD+IL +F E + FF+S+L Sbjct: 182 LTCLRNKSLNEDYLIVQVNKSIISTIGAFDLDPNKVLDLILLLFSENLLDSWRFFLSILR 241 Query: 192 ---------------------ESYMSMCE---------------PQTLCHILGFKFKFYQ 215 E++++ + +LG ++ Sbjct: 242 NSPWGPNKERKFWNQLPDREKETFLNNLSNANGIFNFDERFTNTKSIMSQVLGHNLQYMY 301 Query: 216 EPNGETPSSLYRVAAVLLQFNLIDLDDLYVH-PPDNQKLG 254 + + E S + + A+L+++N I +D+++ H P +++LG Sbjct: 302 KEDDENLESYFMMVALLIKYNFISIDNIWAHLSPSDEELG 341
>gi|19862882|sp|Q09779|YATE_SCHPO Hypothetical protein C1D4.14 in chromosome I gi|11359132|pir||T38055 hypothetical protein SPAC22F3.14c - fission yeast (Schizosaccharomyces pombe) Length = 1628 Score = 84.7 bits (208), Expect = 3e-15 Identities = 61/220 (27%), Positives = 110/220 (50%), Gaps = 47/220 (21%) Query: 82 LKERLDPETLESLGLIKQSQQFNQKSVKIKTKLFYKQQKFNLLREENEGYAKLIAELGQD 141 L RLD + LE++ ++ N+K V+ T L Y+Q+KFNLLREE+EG++ L+ Sbjct: 129 LLSRLDCKFLENINVVPNGDFLNRKIVRTNTSLLYRQKKFNLLREESEGFSHLMINFFDA 188 Query: 142 LS----GSITSDLIL----ENIKSLIGCFNLDPNRVLDVILEVF-ECRPEHDDFFISLL- 191 L+ S+ D ++ ++I S IG F+LDPN+VLD+IL +F E + FF+S+L Sbjct: 189 LTCLRNKSLNEDYLIVQVNKSIISTIGAFDLDPNKVLDLILLLFSENLLDSWRFFLSILR 248 Query: 192 ---------------------ESYMSMCE---------------PQTLCHILGFKFKFYQ 215 E++++ + +LG ++ Sbjct: 249 NSPWGPNKERKFWNQLPDREKETFLNNLSNANGIFNFDERFTNTKSIMSQVLGHNLQYMY 308 Query: 216 EPNGETPSSLYRVAAVLLQFNLIDLDDLYVH-PPDNQKLG 254 + + E S + + A+L+++N I +D+++ H P +++LG Sbjct: 309 KEDDENLESYFMMVALLIKYNFISIDNIWAHLSPSDEELG 348
>gi|32413617|ref|XP_327288.1| hypothetical protein [Neurospora crassa] gi|28924252|gb|EAA33406.1| hypothetical protein [Neurospora crassa] Length = 2573 Score = 84.0 bits (206), Expect = 5e-15 Identities = 47/114 (41%), Positives = 69/114 (60%), Gaps = 8/114 (7%) Query: 70 LSDISYL--VSDTVLKERLDPETLESLGLIKQSQQFNQKSVKIKTKLFYKQQKFNLLREE 127 L D+ Y VS T++++ LDP L+ LGL++ + F + ++ T L Y+Q +NLLREE Sbjct: 232 LRDLMYATEVSTTLMRQILDPAVLQPLGLVRDT--FVRVGIRQSTNLLYRQANYNLLREE 289 Query: 128 NEGYAKLIAELGQDLSGSITSDLILE----NIKSLIGCFNLDPNRVLDVILEVF 177 EGY+KL+ EL S S +++ + LIG F+L P RVLDV L+VF Sbjct: 290 TEGYSKLVTELFTTSSAEPPSSEVVQAAFNKVMGLIGTFDLHPGRVLDVTLDVF 343
>gi|42552385|gb|EAA75228.1| hypothetical protein FG05657.1 [Gibberella zeae PH-1] Length = 2379 Score = 80.1 bits (196), Expect = 7e-14 Identities = 46/104 (44%), Positives = 65/104 (62%), Gaps = 6/104 (5%) Query: 77 VSDTVLKERLDPETLESLGLIKQSQQFNQKSVKIKTKLFYKQQKFNLLREENEGYAKLIA 136 +S ++++ LD E L+ LGLI+ + F + +K T L Y+Q +NLLREE EGY+KLI Sbjct: 225 ISSNLMRQVLDHEVLQQLGLIRDN--FVKLGIKQATNLLYRQANYNLLREETEGYSKLIT 282 Query: 137 ELGQDLSGSI----TSDLILENIKSLIGCFNLDPNRVLDVILEV 176 EL S + ++ E IK+LIG F+LD RVLDV L+V Sbjct: 283 ELFTTSSVAPPPPEMAEQTFERIKALIGTFDLDVGRVLDVTLDV 326
>gi|40744755|gb|EAA63911.1| hypothetical protein AN2226.2 [Aspergillus nidulans FGSC A4] Length = 2429 Score = 79.0 bits (193), Expect = 2e-13 Identities = 43/123 (34%), Positives = 75/123 (60%), Gaps = 9/123 (7%) Query: 77 VSDTVLKERLDPETLESLGLIKQSQQFNQKSVKIKTKLFYKQQKFNLLREENEGYAKLIA 136 ++ +++ +L+ L+SLGL++ + F + ++ +T L Y+Q +NLLREE+EGY+KL+ Sbjct: 286 INPALMRLQLETPLLQSLGLVRDT--FARMGIRKQTNLLYRQSNYNLLREESEGYSKLVT 343 Query: 137 EL-----GQDLSGSITSDLILENIKSLIGCFNLDPNRVLDVILEVFEC-RPEHDDFFISL 190 EL + + + D E +K++IG F++D RVLDV L+VF + FF+ L Sbjct: 344 ELFTTSNNEPPTAEVVED-TFERVKAMIGAFDMDVGRVLDVTLDVFAAVLVKQYRFFVKL 402 Query: 191 LES 193 L + Sbjct: 403 LRA 405
Score = 38.9 bits (89), Expect = 0.17 Identities = 21/52 (40%), Positives = 29/52 (55%), Gaps = 6/52 (11%) Query: 205 HILGFKFKFYQEPNGET----PSSLYRVAAVLLQFNLIDLDDLYVH--PPDN 250 +LGFK +FY P + P +L +AA+L++ I L DLY H PDN Sbjct: 521 QLLGFKLRFYSSPARDKSDVLPDNLIYLAALLIKVGFISLRDLYPHLWRPDN 572
>gi|38110038|gb|EAA55817.1| hypothetical protein MG01468.4 [Magnaporthe grisea 70-15] Length = 2528 Score = 77.8 bits (190), Expect = 3e-13 Identities = 40/108 (37%), Positives = 64/108 (59%), Gaps = 9/108 (8%) Query: 77 VSDTVLKERLDPETLESLGLIKQSQQFNQKSVKIKTKLFYKQQKFNLLREENEGYAKLIA 136 + ++++ LDP+ + LGLI+++ F + ++ T L Y+Q +NLLREE+EG++KL+ Sbjct: 234 IPHALMRQVLDPQFMTQLGLIRET--FVKVGIRQSTNLLYRQANYNLLREESEGFSKLVN 291 Query: 137 ELGQDLSGSITSDL-------ILENIKSLIGCFNLDPNRVLDVILEVF 177 EL L +D E +K LIG F+LD RV D+ L+VF Sbjct: 292 ELYTSLRADPDADYPWDAAQATFERVKGLIGTFDLDVGRVFDISLDVF 339
Score = 49.3 bits (116), Expect = 1e-04 Identities = 31/75 (41%), Positives = 40/75 (53%), Gaps = 5/75 (6%) Query: 201 QTLCHILGFKFKFYQEPNGE---TPSSLYRVAAVLLQFNLIDLDDLY--VHPPDNQKLGL 255 +T ILGFK +FYQ P E P +L VAAVL++ I L D+Y V+ PD + Sbjct: 466 RTAAQILGFKLRFYQTPENEGTKVPGNLLWVAAVLIKIGFISLTDIYPHVYHPDEEMKEY 525 Query: 256 LEALLKIGDWQHAQN 270 E L K Q A+N Sbjct: 526 QEELEKELRKQRAKN 540
>gi|25395798|pir||G88480 protein C16A3.7 [imported] - Caenorhabditis elegans Length = 1242 Score = 57.8 bits (138), Expect = 4e-07 Identities = 42/128 (32%), Positives = 72/128 (56%), Gaps = 12/128 (9%) Query: 250 NQKLGLLEALLKIGDWQHAQNIMDQMPPYYA--ASHKLIALAICKLIHITIEPLYRR--- 304 NQKLGL ALL+ G+W+ AQ ++D++P YYA AS +L A+CK+I +I Y++ Sbjct: 95 NQKLGLTCALLESGNWKQAQMLIDRLPEYYAVQASPRL-CRALCKIIEKSINDFYKKNCS 153 Query: 305 ---VGVPKGAKGSPVNALQNKRAPKQAESFEDLRRDVFNMFCYLGPHLSHDPILFAKVVR 361 G + ++ + N P ES+EDL + + ++ YLGP ++ K+VR Sbjct: 154 LNLFGDLIKSTKPVLDDMGNGLRP--IESWEDLGK-LSSVLAYLGPRIAFRASTNIKIVR 210 Query: 362 IGKSFMKE 369 + ++ ++ Sbjct: 211 LLTAYYRK 218
>gi|44478811|gb|EAJ55617.1| unknown [environmental sequence] Length = 688 Score = 38.9 bits (89), Expect = 0.18 Identities = 39/161 (24%), Positives = 76/161 (47%), Gaps = 29/161 (18%) Query: 11 EWIKNWEKSGRGEFLHLCRILSENKSHD----SSTYRDFQQALYELSYHVIKGNLKHEQA 66 E ++N + + + +C ++ E++ + T + +QAL ELS ++ G +K + Sbjct: 468 ERVRNSVVTDKRQAYWVCTLIEESEVLECQAAEDTAEELRQALPELSIGLVHGRMKSAEK 527 Query: 67 SNVLSD-----ISYLVSDTVLKERLDP--------ETLESLGLIKQSQ---QFNQKSVKI 110 +++D I LV+ TV++ +D E E LGL + Q + + +V Sbjct: 528 QKIMADFKAGSIHLLVATTVIEVGVDVPNSSLMIIENPERLGLAQLHQLRGRVGRGAVAS 587 Query: 111 KTKLFYK-------QQKFNLLREENEGYAKLIAELGQDLSG 144 L YK Q+ N+LR+ N+G+ +IA+ ++ G Sbjct: 588 HCVLLYKAPLSQTASQRLNVLRQSNDGF--VIAQKDLEIRG 626
>gi|44526689|gb|EAJ87469.1| unknown [environmental sequence] Length = 688 Score = 38.5 bits (88), Expect = 0.23 Identities = 38/161 (23%), Positives = 77/161 (47%), Gaps = 29/161 (18%) Query: 11 EWIKNWEKSGRGEFLHLCRILSENKSHD----SSTYRDFQQALYELSYHVIKGNLKHEQA 66 E ++N + + + +C ++ E++ + T + +QAL EL+ ++ G +K + Sbjct: 468 ERVRNSVITDKRQAYWVCTLIEESEVLECQAAEDTAEELRQALPELTIGLVHGRMKSAEK 527 Query: 67 SNVLSD-----ISYLVSDTVLKERLDP--------ETLESLGLIKQSQ---QFNQKSVKI 110 +++D I+ LV+ TV++ +D E E LGL + Q + + +V Sbjct: 528 QQIMTDFKAGTINLLVATTVIEVGVDVPNSSLMIIENPERLGLAQLHQLRGRVGRGAVAS 587 Query: 111 KTKLFYK-------QQKFNLLREENEGYAKLIAELGQDLSG 144 L YK Q+ N+LR+ N+G+ +IA+ ++ G Sbjct: 588 HCVLLYKAPLSQTASQRLNVLRQSNDGF--VIAQKDLEIRG 626
>gi|24375845|ref|NP_719888.1| ATP-dependent DNA helicase RecG [Shewanella oneidensis MR-1] gi|24350804|gb|AAN57332.1| ATP-dependent DNA helicase RecG [Shewanella oneidensis MR-1] Length = 688 Score = 38.5 bits (88), Expect = 0.24 Identities = 38/161 (23%), Positives = 77/161 (47%), Gaps = 29/161 (18%) Query: 11 EWIKNWEKSGRGEFLHLCRILSENKSHD----SSTYRDFQQALYELSYHVIKGNLKHEQA 66 E ++N + + + +C ++ E++ + T + +QAL EL+ ++ G +K + Sbjct: 468 ERVRNSVITDKRQAYWVCTLIEESEVLECQAAEDTAEELRQALPELTIGLVHGRMKSAEK 527 Query: 67 SNVLSD-----ISYLVSDTVLKERLDP--------ETLESLGLIKQSQ---QFNQKSVKI 110 +++D I+ LV+ TV++ +D E E LGL + Q + + +V Sbjct: 528 QKIMADFKAGTINLLVATTVIEVGVDVPNSSLMIIENPERLGLAQLHQLRGRVGRGAVAS 587 Query: 111 KTKLFYK-------QQKFNLLREENEGYAKLIAELGQDLSG 144 L YK Q+ N+LR+ N+G+ +IA+ ++ G Sbjct: 588 HCVLLYKAPLSQTASQRLNVLRQSNDGF--VIAQKDLEIRG 626
>gi|6324190|ref|NP_014260.1| Required for LacZ RNA expression from certain plasmids; suppressor of the Transcriptional (T) defect of Hpr1 (H) by Overexpression (O); plays a role in transcription elongation by RNA polymerase II; Rlr1p [Saccharomyces cerevisiae] gi|1710594|sp|P53552|RLR1_YEAST RLR1 protein (THO2 protein) gi|1078062|pir||S55144 RLR1 protein - yeast (Saccharomyces cerevisiae) gi|780548|gb|AAA93160.1| Rlr1p [Saccharomyces cerevisiae] gi|854498|emb|CAA86886.1| orf9 [Saccharomyces cerevisiae] gi|1302087|emb|CAA96023.1| RLR1 [Saccharomyces cerevisiae] Length = 1597 Score = 38.1 bits (87), Expect = 0.36 Identities = 42/128 (32%), Positives = 62/128 (48%), Gaps = 6/128 (4%) Query: 68 NVLSDISYLVSDTVLKERLDPETLESLGLIKQSQQFNQKSVKIKTKLFYKQQKFNLLREE 127 N L+ IS L E L + S L+ + Q + + K+K Y+ +K+NLL E Sbjct: 121 NDLTTISLCKLIPSLHEELFKFSWISSKLLNKEQTTLLRHLLKKSK--YELKKYNLLVEN 178 Query: 128 NEGYAKLIAEL---GQDLSGSITSDLILENIKSLIGCFNLDPNRVLDVILEV-FECRPEH 183 + GY +L+A L D L+ I ++G ++LD R LDVIL V + E Sbjct: 179 SVGYGQLVALLILAYYDPDNFSKVSAYLKEIYHIMGKYSLDSIRTLDVILNVSSQFITEG 238 Query: 184 DDFFISLL 191 FFI+LL Sbjct: 239 YKFFIALL 246
>gi|10186497|gb|AAG14894.1| HypX [Burkholderia pseudomallei] Length = 696 Score = 37.7 bits (86), Expect = 0.43 Identities = 35/134 (26%), Positives = 71/134 (52%), Gaps = 13/134 (9%) Query: 8 VPAEWIKNWEKSGRGEFLHLCRILSEN-KSHDSSTYRDFQQALYELSYHVIKGNLKHEQA 66 V A +K W+ + +G L CR +++ S DS ++A+ +LS ++ G+++ + Sbjct: 135 VVAMHVKKWQTT-KGSLLQKCRAIAKGFLSSDSP-----EEAVGDLSANLELGDIE-PRI 187 Query: 67 SNVLS--DISYLVSDTVLKERLDPETLES---LGLIKQSQQFNQKSVKIKTKLFYKQQKF 121 N+LS D ++V L E +P+++ GL+ S + N+K+ KI+ +F + + Sbjct: 188 FNILSKMDRKFVVLMDRLDEGYEPDSIGIGIITGLVYASIELNKKTEKIRPIIFLRDNIY 247 Query: 122 NLLREENEGYAKLI 135 L +E+ Y++ I Sbjct: 248 RALSKEDPDYSRNI 261
>gi|43822186|gb|EAF65516.1| unknown [environmental sequence] Length = 271 Score = 37.0 bits (84), Expect = 0.69 Identities = 39/131 (29%), Positives = 58/131 (44%), Gaps = 12/131 (9%) Query: 46 QQALYELSYHVIKGN---LKHEQASNVLSDISYLVSDTVLKERLDPETLESLGLIKQSQQ 102 QQ L EL IK N LK N +S T L++ +D +E + + QQ Sbjct: 85 QQRLEELKEREIKLNNDLLKLRSMPNTISS-----EKTRLQKLIDDNKIEYDKIATELQQ 139 Query: 103 FNQKSVKIKTKLFYKQQKFNLLREEN---EGYAKLIAELGQDLSGSITSDLILENIKSLI 159 Q + +I KL ++ K N LREE EG I E +S + L +E + L Sbjct: 140 QEQSANEINKKLKLEEVKLNELREEKIRLEGTVDTINETINQISSQVRERLNIE-LNELF 198 Query: 160 GCFNLDPNRVL 170 ++PN++L Sbjct: 199 DLAQINPNKIL 209
>gi|23100613|ref|NP_694080.1| class III heat shock protein [Oceanobacillus iheyensis HTE831] gi|22778846|dbj|BAC15114.1| class III heat shock protein (chaperonin) [Oceanobacillus iheyensis HTE831] Length = 625 Score = 37.0 bits (84), Expect = 0.76 Identities = 39/146 (26%), Positives = 63/146 (43%), Gaps = 11/146 (7%) Query: 43 RDFQQALYELSYHVIKGNLKHEQASNVLSDISYLVSDTVLKERLDPETLESLGLIKQSQQ 102 RD+++ L S G L ++ +++L D V V E L S +++ +Q Sbjct: 296 RDYEKGLELYS----NGVLIMDKCADLLPDYFSFVKGMVDSEDLSLNI--SREMLQHDRQ 349 Query: 103 FNQKSVKIKTKLFYKQQKFNLLREENEGYAKLIAELGQDLSGSITSDL--ILENIKSLIG 160 + IK K+ KQQ +LLR+E E Y K GQ + + SD + +K L+ Sbjct: 350 LKLIAKNIKKKV--KQQLVSLLRDERENYEKFFDAFGQQIKFGVYSDYGQNKDELKDLL- 406 Query: 161 CFNLDPNRVLDVILEVFECRPEHDDF 186 F + L + E C PE + Sbjct: 407 LFYSSKEKKLVTLEEYVSCMPEDQKY 432
>gi|43774923|gb|EAF41940.1| unknown [environmental sequence] Length = 266 Score = 36.6 bits (83), Expect = 0.85 Identities = 19/52 (36%), Positives = 33/52 (63%), Gaps = 3/52 (5%) Query: 115 FYKQQKFNLLREENEGYAKLIAELGQDLSGSITSDLILENIKSLIGCFNLDP 166 ++K+ +F+L NEG+A++I + G + T I+E + SL+G +NLDP Sbjct: 84 YFKETQFDL---ANEGHARMIMKGGYGAGVTDTDGNIVEPLASLLGYWNLDP 132
>gi|43491165|gb|EAE00391.1| unknown [environmental sequence] Length = 294 Score = 36.2 bits (82), Expect = 1.2 Identities = 31/110 (28%), Positives = 53/110 (48%), Gaps = 8/110 (7%) Query: 50 YELSYHVIKGNLKHEQASNVLSDISYLVSDTVLKERLDPETLESLGLIKQSQQFNQKSVK 109 Y L++ + NLK + + + IS L + + LE ++ Q+ + +QK Sbjct: 178 YFLAFFIDSANLKIFEFNRFIKSISPLSKEEFIT------ALEESFIVTQTTRKHQKPTS 231 Query: 110 IKTKLFYKQQKFNLLREENEGYAKLIAELGQDLSGSITSDLILENIKSLI 159 K Y +K+ LL+ +NE Y KL E + L+ + S+ IL+ I LI Sbjct: 232 KKELTIYIDKKWYLLKIKNEIYNKL--EFKEQLNSELVSNFILKPILHLI 279
>gi|28867305|ref|NP_789924.1| ATP-dependent DNA helicase RecG [Pseudomonas syringae pv. tomato str. DC3000] gi|28850539|gb|AAO53619.1| ATP-dependent DNA helicase RecG [Pseudomonas syringae pv. tomato str. DC3000] Length = 691 Score = 36.2 bits (82), Expect = 1.3 Identities = 33/128 (25%), Positives = 60/128 (46%), Gaps = 25/128 (19%) Query: 40 STYRDFQQALYELSYHVIKGNLKHEQASNVLSD-----ISYLVSDTVLKERLDP------ 88 +TY + AL E+ +I G +KH + + ++++ + LV+ TV++ +D Sbjct: 504 TTYEELTSALGEVRVGLIHGRMKHAEKAAIMAEFKQGALQLLVATTVIEVGVDVPNSSLM 563 Query: 89 --ETLESLGLIKQSQ---QFNQKSVKIKTKLFYK-------QQKFNLLREENEGYAKLIA 136 E E LGL + Q + + S L Y +Q+ ++RE N+G+ +IA Sbjct: 564 IIENPERLGLAQLHQLRGRVGRGSAVSHCVLLYHPPLSQIGRQRLGIMRETNDGF--IIA 621 Query: 137 ELGQDLSG 144 E +L G Sbjct: 622 EKDLELRG 629
>gi|37718872|gb|AAR01743.1| putative kinase interacting protein [Oryza sativa (japonica cultivar-group)] Length = 1500 Score = 35.4 bits (80), Expect = 2.2 Identities = 28/104 (26%), Positives = 48/104 (46%), Gaps = 18/104 (17%) Query: 32 SENKSHDSSTYRDFQQALYELSYHVIKGNLKHEQASNVLSDISYLVSDT--------VLK 83 S+ ++ D+ Q+ L LS E+ ++ S IS L+ T LK Sbjct: 110 SKKQAKDNQDNERLQKELESLS----------EENKDLKSRISSLLEQTNKAELEVVCLK 159 Query: 84 ERLDPETLESLGLIKQSQQFNQKSVKIKTKLFYKQQKFNLLREE 127 E L + E ++ Q QQ + +K+++ + Q+KFN L+EE Sbjct: 160 EALAQQNTEKEAIVLQCQQSTARLQNLKSEILHTQEKFNRLKEE 203
>gi|31228034|ref|XP_317984.1| ENSANGP00000010768 [Anopheles gambiae] gi|21301108|gb|EAA13253.1| ENSANGP00000010768 [Anopheles gambiae str. PEST] Length = 781 Score = 34.7 bits (78), Expect = 3.8 Identities = 26/95 (27%), Positives = 47/95 (49%), Gaps = 8/95 (8%) Query: 13 IKNWEKSGRGEFLHLCRILSENKSHDSSTYRDFQQALYELSYHVIKGNLKHEQASNV--- 69 +++ E G + + + SEN + + FQ+ ++L +I HE SN+ Sbjct: 217 VQDGEAGGITQQIGATNVPSENIKEQTRFVKGFQELEFKLPGLLIIDTPGHESFSNLRSR 276 Query: 70 ---LSDISYLVSDTVLKERLDPETLESLGLIKQSQ 101 L DI+ LV D + L+P+T+ES+ L+K + Sbjct: 277 GSSLCDIAILVVD--IMHGLEPQTIESINLLKSKR 309
>gi|43013210|gb|EAB73386.1| unknown [environmental sequence] Length = 267 Score = 34.3 bits (77), Expect = 4.6 Identities = 17/64 (26%), Positives = 33/64 (51%), Gaps = 12/64 (18%) Query: 132 AKLIAELGQDLSGSITSDLILENIKSLIGC-FNLDPNRV-----------LDVILEVFEC 179 A + +G + G+ +S++I++ +K L+GC + P+R+ LE+F C Sbjct: 98 ANCLNRMGASIKGAGSSEIIIDGVKELVGCNHKVIPDRIEAGSFAIAAAITKSSLELFNC 157 Query: 180 RPEH 183 P+H Sbjct: 158 EPKH 161
>gi|28899313|ref|NP_798918.1| glutamate-cysteine ligase [Vibrio parahaemolyticus RIMD 2210633] gi|33301162|sp|Q87LS2|GSH1_VIBPA Glutamate--cysteine ligase (Gamma-glutamylcysteine synthetase) (Gamma-ECS) (GCS) gi|28807537|dbj|BAC60802.1| glutamate-cysteine ligase [Vibrio parahaemolyticus] Length = 522 Score = 34.3 bits (77), Expect = 5.2 Identities = 34/107 (31%), Positives = 60/107 (56%), Gaps = 12/107 (11%) Query: 51 ELSYHVIKGNLKHEQASNV-LSDISYLVS-DTVLKERLDP--ETLESLG--LIKQSQQFN 104 +L + I G L +A+++ LSD+ Y S +VLK + + LE LG + + S++F Sbjct: 214 KLPFESIGGTLYLPKATSLRLSDLGYTNSAQSVLKIGFNSIDQYLEGLGDAIRRPSEEFA 273 Query: 105 QKSVKIKTKLFYKQQKFNLLREENEGYA----KLIAELGQDLSGSIT 147 + VK+ + Y+Q N+L+ ENE YA K +A+ G+ S +++ Sbjct: 274 KIGVKVDGE--YRQLNTNILQIENELYAPIRPKRVAKSGEKPSDALS 318
>gi|3786341|gb|AAC70893.1| cytoplasmic axial filament protein [Actinobacillus actinomycetemcomitans] Length = 243 Score = 33.9 bits (76), Expect = 5.6 Identities = 16/51 (31%), Positives = 33/51 (64%), Gaps = 7/51 (13%) Query: 74 SYLVSDTVLKERLDPETLESLGLIKQSQQFNQKSVKIKTKLFYKQQKFNLL 124 S+ V+D ++ E ES GL+ + + F K +++KT++FY Q++F+++ Sbjct: 198 SHAVADYLINE-------ESHGLLAELEVFIGKQIQVKTEVFYTQEQFDVV 241
>gi|42631651|ref|ZP_00157189.1| hypothetical protein Hflu2078601 [Haemophilus influenzae R2866] Length = 491 Score = 33.9 bits (76), Expect = 6.7 Identities = 14/33 (42%), Positives = 24/33 (72%) Query: 92 ESLGLIKQSQQFNQKSVKIKTKLFYKQQKFNLL 124 ES GL+ + + F K VK+KT+ FY Q++F+++ Sbjct: 457 ESHGLLPEVEMFIGKRVKVKTEQFYNQEQFDVV 489
>gi|16273263|ref|NP_439504.1| cytoplasmic axial filament protein [Haemophilus influenzae Rd KW20] gi|1168735|sp|P45175|RNG_HAEIN Ribonuclease G (RNase G) (Cytoplasmic axial filament protein) gi|1073970|pir||F64118 cytosolic axial filament protein - Haemophilus influenzae (strain Rd KW20) gi|1574815|gb|AAC23000.1| cytoplasmic axial filament protein (cafA) [Haemophilus influenzae Rd] Length = 491 Score = 33.9 bits (76), Expect = 6.8 Identities = 14/33 (42%), Positives = 24/33 (72%) Query: 92 ESLGLIKQSQQFNQKSVKIKTKLFYKQQKFNLL 124 ES GL+ + + F K VK+KT+ FY Q++F+++ Sbjct: 457 ESHGLLPEVEMFIGKRVKVKTEQFYNQEQFDVV 489
>gi|45198576|ref|NP_985605.1| AFR058Cp [Eremothecium gossypii] gi|44984527|gb|AAS53429.1| AFR058Cp [Eremothecium gossypii] Length = 1593 Score = 33.5 bits (75), Expect = 7.4 Identities = 27/79 (34%), Positives = 39/79 (49%), Gaps = 3/79 (3%) Query: 116 YKQQKFNLLREENEGYAKLIAELG---QDLSGSITSDLILENIKSLIGCFNLDPNRVLDV 172 Y +K+NLL E G++++ L D ++D I+ + G + LDP RVLDV Sbjct: 158 YHLKKYNLLFESPLGFSQICMLLHVAYADKDRFQSADYYWRQIQFVAGKYTLDPIRVLDV 217 Query: 173 ILEVFECRPEHDDFFISLL 191 IL V H F+ LL Sbjct: 218 ILRVSSVHVHHHHEFLVLL 236
>gi|42629356|ref|ZP_00154903.1| hypothetical protein Hflu1104401 [Haemophilus influenzae R2846] Length = 140 Score = 33.5 bits (75), Expect = 7.6 Identities = 14/33 (42%), Positives = 24/33 (72%) Query: 92 ESLGLIKQSQQFNQKSVKIKTKLFYKQQKFNLL 124 ES GL+ + + F K VK+KT+ FY Q++F+++ Sbjct: 106 ESHGLLPEVEMFIGKRVKVKTEQFYNQEQFDVV 138
>gi|44400206|gb|EAJ00503.1| unknown [environmental sequence] Length = 439 Score = 33.5 bits (75), Expect = 9.3 Identities = 26/78 (33%), Positives = 40/78 (51%), Gaps = 4/78 (5%) Query: 96 LIKQSQQFNQKSVKIKTKLFYKQQKFNLLREE---NEGYAKLIAELGQDLSGSITSDLIL 152 + +Q +Q Q S +I KL ++ K N LREE EG I E + LS + L + Sbjct: 131 IAEQLRQTEQNSNEINKKLKLEEIKLNELREERIRTEGQINTINEAIKLLSTQVKERLSI 190 Query: 153 ENIKSLIGCFNLDPNRVL 170 E ++ L +DPN++L Sbjct: 191 E-LEELYNIGEIDPNKIL 207
>gi|37524189|ref|NP_927533.1| hypothetical protein [Photorhabdus luminescens subsp. laumondii TTO1] gi|36783612|emb|CAE12462.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1] Length = 529 Score = 33.1 bits (74), Expect = 9.9 Identities = 40/150 (26%), Positives = 64/150 (42%), Gaps = 20/150 (13%) Query: 20 GRGEFLHLCRILSENKSHDSSTYRDFQQALYELSYHVIKGNLKHEQASNV------LSDI 73 G+ H I K + +S + F L K N+K + V SDI Sbjct: 50 GQASIEHAVAITPNTKFYMASVSKQFTAFCIALLEKEGKINVKDKVGKYVDYFPAHFSDI 109 Query: 74 S--YLVSDTV-LKERLDPETLESLGLIKQSQQFNQKSVKIKTKLFYKQQKFNLLREE--- 127 + +L+ T L+++ P GL ++ F+ +S+ + KL +QQK N E Sbjct: 110 TIEHLIHHTSGLRDKYAP-----YGLAGKNSDFDHRSIDLLRKLIQRQQKLNFTPGEYFS 164 Query: 128 --NEGYAKLIAELGQDLSGSITSDLILENI 155 N GY L+AE+ + +SG + ENI Sbjct: 165 YTNMGY-NLLAEIIKVVSGKSLREYAKENI 193
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 9, 2004 2:01 PM Number of letters in database: 748,330,716 Number of sequences in database: 2,678,069 Lambda K H 0.321 0.138 0.405 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 110,275,015 Number of Sequences: 2678069 Number of extensions: 4648791 Number of successful extensions: 11140 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 6 Number of HSP's successfully gapped in prelim test: 9 Number of HSP's that attempted gapping in prelim test: 11127 Number of HSP's gapped (non-prelim): 21 length of query: 369 length of database: 748,330,716 effective HSP length: 127 effective length of query: 242 effective length of database: 408,215,953 effective search space: 98788260626 effective search space used: 98788260626 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 75 (33.5 bits)
