BLASTP 2.2.8 [Jan-05-2004]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

RID: 1079441896-1097-47039493358.BLASTQ3

Query= FGENES 1.5 5 Multiexon gene 311693 - 392398 295 a Ch+
         (295 letters)


Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF 
           2,678,069 sequences; 748,330,716 total letters

 
If you have any problems or questions with the results of this search 
please refer to the BLAST FAQs

Taxonomy reports

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|34932836|ref|XP_233108.2|  similar to stromal antigen 2 [...   203   3e-51 
gi|34365316|emb|CAE45985.1|  hypothetical protein [Homo sapi...   187   3e-46 
gi|31563531|ref|NP_006594.3|  stromal antigen 2 [Homo sapien...   187   3e-46 
gi|34365367|emb|CAE46005.1|  hypothetical protein [Homo sapi...   187   3e-46 
gi|34365369|emb|CAE46006.1|  hypothetical protein [Homo sapi...   187   3e-46 
gi|21732462|emb|CAD38591.1|  hypothetical protein [Homo sapi...   187   3e-46 
gi|34873410|ref|XP_347235.1|  similar to stromal antigen 2 [...   177   3e-43 
gi|29336545|sp|Q8N3U4|SA2_HUMAN  Cohesin subunit SA-2 (Strom...   133   6e-30 
gi|2204215|emb|CAA99732.1|  nuclear protein SA-2 [Homo sapiens]   132   6e-30 
gi|29336529|sp|O35638|SA2_MOUSE  Cohesin subunit SA-2 (Strom...   132   6e-30 
gi|42734454|ref|NP_067440.2|  stromal antigen 2; nuclear pro...   132   7e-30 
gi|29336558|sp|Q9DGN0|SA2_XENLA  Cohesin subunit SA-2 (XSA-2...   129   1e-28 
gi|29336559|sp|Q9DGN1|SA1_XENLA  Cohesin subunit SA-1 (XSA-1...   108   1e-22 
gi|40352781|gb|AAH64699.1|  STAG1 protein [Homo sapiens]          108   1e-22 
gi|5032063|ref|NP_005853.1|  stromal antigen 1; nuclear prot...   108   1e-22 
gi|34865816|ref|XP_236609.2|  similar to nuclear protein SA-...   107   4e-22 
gi|26339492|dbj|BAC33417.1|  unnamed protein product [Mus mu...   104   2e-21 
gi|40254610|ref|NP_033308.2|  stromal antigen 1 [Mus musculu...   104   3e-21 
gi|29336557|sp|Q9D3E6|SA1_MOUSE  Cohesin subunit SA-1 (Strom...   102   1e-20 
gi|12857492|dbj|BAB31022.1|  unnamed protein product [Mus mu...    97   3e-19 
gi|6912686|ref|NP_036579.1|  stromal antigen 3 [Homo sapiens...    63   6e-09 
gi|31199647|ref|XP_308771.1|  ENSANGP00000015157 [Anopheles ...    62   1e-08 
gi|8394370|ref|NP_058660.1|  stromal antigen 3; stromalin 3 ...    60   7e-08 
gi|16758546|ref|NP_446182.1|  stromal antigen 3 [Rattus norv...    58   2e-07 
gi|17137394|ref|NP_477268.1|  Stromalin CG3423-PA [Drosophil...    56   1e-06 
gi|16769478|gb|AAL28958.1|  LD34181p [Drosophila melanogaster]     55   1e-06 
gi|7511978|pir||T13854  nuclear protein SA - fruit fly (Dros...    54   6e-06 
gi|26335591|dbj|BAC31496.1|  unnamed protein product [Mus mu...    40   0.087 
gi|22981631|ref|ZP_00027064.1|  COG0454: Histone acetyltrans...    37   0.55  
gi|42554108|gb|EAA76951.1|  hypothetical protein FG07139.1 [...    36   1.1   
gi|45187780|ref|NP_984003.1|  ADL093Wp [Eremothecium gossypi...    35   1.4   
gi|6322163|ref|NP_012238.1|  Irregular; involved in sister c...    34   3.5   
gi|619595|gb|AAC49039.1|  unknown                                  34   3.5   
gi|39583901|emb|CAE63991.1|  Hypothetical protein CBG08584 [...    34   4.2   
gi|19114501|ref|NP_593589.1|  hypothetical protein. [Schizos...    33   5.5   
gi|19855048|sp|O13816|SCC3_SCHPO  Cohesin subunit psc3 (SCC3...    33   5.5   

Alignments


>gi|34932836|ref|XP_233108.2|   similar to stromal antigen 2 [Rattus norvegicus]
          Length = 1197

 Score =  203 bits (517), Expect = 3e-51
 Identities = 97/129 (75%), Positives = 97/129 (75%)

Query: 148 MIAAPEIPTDFNLLQESETHFSSDTDFEDIEXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 207
           MIAAPEIPTDFNLLQESETHFSSDTDFEDIE                             
Sbjct: 1   MIAAPEIPTDFNLLQESETHFSSDTDFEDIEGKNQKQGKGKTCKKGKKGPAEKGKSGNGG 60

Query: 208 XXPPSGPNRMNGHHQQNGVENMMLFEVVKMGKSAMQSVVDDWIESYKHDRDIALLDLINF 267
             PPSGPNRMNGHHQQNGVENMMLFEVVKMGKSAMQSVVDDWIESYKHDRDIALLDLINF
Sbjct: 61  GKPPSGPNRMNGHHQQNGVENMMLFEVVKMGKSAMQSVVDDWIESYKHDRDIALLDLINF 120

Query: 268 FIQCSGCKA 276
           FIQCSGCK 
Sbjct: 121 FIQCSGCKG 129



>gi|34365316|emb|CAE45985.1|   hypothetical protein [Homo sapiens]
          Length = 1268

 Score =  187 bits (475), Expect = 3e-46
 Identities = 97/129 (75%), Positives = 97/129 (75%)

Query: 148 MIAAPEIPTDFNLLQESETHFSSDTDFEDIEXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 207
           MIAAPEIPTDFNLLQESETHFSSDTDFEDIE                             
Sbjct: 1   MIAAPEIPTDFNLLQESETHFSSDTDFEDIEGKNQKQGKGKTCKKGKKGPAEKGKGGNGG 60

Query: 208 XXPPSGPNRMNGHHQQNGVENMMLFEVVKMGKSAMQSVVDDWIESYKHDRDIALLDLINF 267
             PPSGPNRMNGHHQQNGVENMMLFEVVKMGKSAMQSVVDDWIESYKHDRDIALLDLINF
Sbjct: 61  GKPPSGPNRMNGHHQQNGVENMMLFEVVKMGKSAMQSVVDDWIESYKHDRDIALLDLINF 120

Query: 268 FIQCSGCKA 276
           FIQCSGCK 
Sbjct: 121 FIQCSGCKG 129



>gi|31563531|ref|NP_006594.3|   stromal antigen 2 [Homo sapiens]
 gi|37515276|gb|AAH01765.2|   Stromal antigen 2 [Homo sapiens]
          Length = 1231

 Score =  187 bits (474), Expect = 3e-46
 Identities = 97/129 (75%), Positives = 97/129 (75%)

Query: 148 MIAAPEIPTDFNLLQESETHFSSDTDFEDIEXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 207
           MIAAPEIPTDFNLLQESETHFSSDTDFEDIE                             
Sbjct: 1   MIAAPEIPTDFNLLQESETHFSSDTDFEDIEGKNQKQGKGKTCKKGKKGPAEKGKGGNGG 60

Query: 208 XXPPSGPNRMNGHHQQNGVENMMLFEVVKMGKSAMQSVVDDWIESYKHDRDIALLDLINF 267
             PPSGPNRMNGHHQQNGVENMMLFEVVKMGKSAMQSVVDDWIESYKHDRDIALLDLINF
Sbjct: 61  GKPPSGPNRMNGHHQQNGVENMMLFEVVKMGKSAMQSVVDDWIESYKHDRDIALLDLINF 120

Query: 268 FIQCSGCKA 276
           FIQCSGCK 
Sbjct: 121 FIQCSGCKG 129



>gi|34365367|emb|CAE46005.1|   hypothetical protein [Homo sapiens]
          Length = 1231

 Score =  187 bits (474), Expect = 3e-46
 Identities = 97/129 (75%), Positives = 97/129 (75%)

Query: 148 MIAAPEIPTDFNLLQESETHFSSDTDFEDIEXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 207
           MIAAPEIPTDFNLLQESETHFSSDTDFEDIE                             
Sbjct: 1   MIAAPEIPTDFNLLQESETHFSSDTDFEDIEGKNQKQGKGKTCKKGKKGPAEKGKGGNGG 60

Query: 208 XXPPSGPNRMNGHHQQNGVENMMLFEVVKMGKSAMQSVVDDWIESYKHDRDIALLDLINF 267
             PPSGPNRMNGHHQQNGVENMMLFEVVKMGKSAMQSVVDDWIESYKHDRDIALLDLINF
Sbjct: 61  GKPPSGPNRMNGHHQQNGVENMMLFEVVKMGKSAMQSVVDDWIESYKHDRDIALLDLINF 120

Query: 268 FIQCSGCKA 276
           FIQCSGCK 
Sbjct: 121 FIQCSGCKG 129



>gi|34365369|emb|CAE46006.1|   hypothetical protein [Homo sapiens]
          Length = 1231

 Score =  187 bits (474), Expect = 3e-46
 Identities = 97/129 (75%), Positives = 97/129 (75%)

Query: 148 MIAAPEIPTDFNLLQESETHFSSDTDFEDIEXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 207
           MIAAPEIPTDFNLLQESETHFSSDTDFEDIE                             
Sbjct: 1   MIAAPEIPTDFNLLQESETHFSSDTDFEDIEGKNQKQGKGKTCKKGKKGPAEKGKGGNGG 60

Query: 208 XXPPSGPNRMNGHHQQNGVENMMLFEVVKMGKSAMQSVVDDWIESYKHDRDIALLDLINF 267
             PPSGPNRMNGHHQQNGVENMMLFEVVKMGKSAMQSVVDDWIESYKHDRDIALLDLINF
Sbjct: 61  GKPPSGPNRMNGHHQQNGVENMMLFEVVKMGKSAMQSVVDDWIESYKHDRDIALLDLINF 120

Query: 268 FIQCSGCKA 276
           FIQCSGCK 
Sbjct: 121 FIQCSGCKG 129



>gi|21732462|emb|CAD38591.1|   hypothetical protein [Homo sapiens]
          Length = 1231

 Score =  187 bits (474), Expect = 3e-46
 Identities = 97/129 (75%), Positives = 97/129 (75%)

Query: 148 MIAAPEIPTDFNLLQESETHFSSDTDFEDIEXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 207
           MIAAPEIPTDFNLLQESETHFSSDTDFEDIE                             
Sbjct: 1   MIAAPEIPTDFNLLQESETHFSSDTDFEDIEGKNQKQGKGKTCKKDKKGPAEKGKGGNGG 60

Query: 208 XXPPSGPNRMNGHHQQNGVENMMLFEVVKMGKSAMQSVVDDWIESYKHDRDIALLDLINF 267
             PPSGPNRMNGHHQQNGVENMMLFEVVKMGKSAMQSVVDDWIESYKHDRDIALLDLINF
Sbjct: 61  GKPPSGPNRMNGHHQQNGVENMMLFEVVKMGKSAMQSVVDDWIESYKHDRDIALLDLINF 120

Query: 268 FIQCSGCKA 276
           FIQCSGCK 
Sbjct: 121 FIQCSGCKG 129



>gi|34873410|ref|XP_347235.1|   similar to stromal antigen 2 [Rattus norvegicus]
          Length = 745

 Score =  177 bits (449), Expect = 3e-43
 Identities = 86/128 (67%), Positives = 89/128 (69%), Gaps = 3/128 (2%)

Query: 149 IAAPEIPTDFNLLQESETHFSSDTDFEDIEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 208
           + A  I T+F   +ESETHFSSDTDFEDIE                              
Sbjct: 1   MPANAIQTNF---RESETHFSSDTDFEDIEGKNQKQGKGKTCKKGKKGPAEKGKSGNGGG 57

Query: 209 XPPSGPNRMNGHHQQNGVENMMLFEVVKMGKSAMQSVVDDWIESYKHDRDIALLDLINFF 268
            PPSGPNRMNGHHQQNGVENMMLFEVVKMGKSAMQSVVDDWIESYKHDRDIALLDLINFF
Sbjct: 58  KPPSGPNRMNGHHQQNGVENMMLFEVVKMGKSAMQSVVDDWIESYKHDRDIALLDLINFF 117

Query: 269 IQCSGCKA 276
           IQCSGCK 
Sbjct: 118 IQCSGCKG 125



>gi|29336545|sp|Q8N3U4|SA2_HUMAN   Cohesin subunit SA-2 (Stromal antigen 2) (SCC3 homolog 2)
 gi|11876037|emb|CAC18961.1|   bA517O1.1 (similar to SA2 nuclear protein) [Homo sapiens]
          Length = 1162

 Score =  133 bits (334), Expect = 6e-30
 Identities = 59/60 (98%), Positives = 59/60 (98%)

Query: 217 MNGHHQQNGVENMMLFEVVKMGKSAMQSVVDDWIESYKHDRDIALLDLINFFIQCSGCKA 276
           MNGHHQQNGVENMMLFEVVKMGKSAMQSVVDDWIESYKHDRDIALLDLINFFIQCSGCK 
Sbjct: 1   MNGHHQQNGVENMMLFEVVKMGKSAMQSVVDDWIESYKHDRDIALLDLINFFIQCSGCKG 60



>gi|2204215|emb|CAA99732.1|   nuclear protein SA-2 [Homo sapiens]
          Length = 1162

 Score =  132 bits (333), Expect = 6e-30
 Identities = 59/60 (98%), Positives = 59/60 (98%)

Query: 217 MNGHHQQNGVENMMLFEVVKMGKSAMQSVVDDWIESYKHDRDIALLDLINFFIQCSGCKA 276
           MNGHHQQNGVENMMLFEVVKMGKSAMQSVVDDWIESYKHDRDIALLDLINFFIQCSGCK 
Sbjct: 1   MNGHHQQNGVENMMLFEVVKMGKSAMQSVVDDWIESYKHDRDIALLDLINFFIQCSGCKG 60



>gi|29336529|sp|O35638|SA2_MOUSE   Cohesin subunit SA-2 (Stromal antigen 2) (SCC3 homolog 2)
 gi|7513754|pir||T30194   nuclear protein SA2 - mouse
 gi|2644957|emb|CAA05638.1|   SA2 nuclear protein [Mus musculus]
          Length = 1162

 Score =  132 bits (333), Expect = 6e-30
 Identities = 59/60 (98%), Positives = 59/60 (98%)

Query: 217 MNGHHQQNGVENMMLFEVVKMGKSAMQSVVDDWIESYKHDRDIALLDLINFFIQCSGCKA 276
           MNGHHQQNGVENMMLFEVVKMGKSAMQSVVDDWIESYKHDRDIALLDLINFFIQCSGCK 
Sbjct: 1   MNGHHQQNGVENMMLFEVVKMGKSAMQSVVDDWIESYKHDRDIALLDLINFFIQCSGCKG 60



>gi|42734454|ref|NP_067440.2|   stromal antigen 2; nuclear protein SA2 [Mus musculus]
 gi|41940887|gb|AAH66041.1|   Stromal antigen 2 [Mus musculus]
          Length = 1162

 Score =  132 bits (333), Expect = 7e-30
 Identities = 59/60 (98%), Positives = 59/60 (98%)

Query: 217 MNGHHQQNGVENMMLFEVVKMGKSAMQSVVDDWIESYKHDRDIALLDLINFFIQCSGCKA 276
           MNGHHQQNGVENMMLFEVVKMGKSAMQSVVDDWIESYKHDRDIALLDLINFFIQCSGCK 
Sbjct: 1   MNGHHQQNGVENMMLFEVVKMGKSAMQSVVDDWIESYKHDRDIALLDLINFFIQCSGCKG 60



>gi|29336558|sp|Q9DGN0|SA2_XENLA   Cohesin subunit SA-2 (XSA-2) (Stromal antigen 2 homolog) (SCC3
           homolog 2)
 gi|9837123|gb|AAG00431.1|   cohesin subunit XSA2 [Xenopus laevis]
          Length = 1194

 Score =  129 bits (323), Expect = 1e-28
 Identities = 60/80 (75%), Positives = 67/80 (83%), Gaps = 1/80 (1%)

Query: 217 MNGHHQQNGVENMMLFEVVKMGKSAMQSVVDDWIESYKHDRDIALLDLINFFIQCSGCKA 276
           MNGHHQQNGVENMMLFEVVKMGKSAMQSVVDDWIE+YKH +D+ALLDLINFFIQCSGCK 
Sbjct: 1   MNGHHQQNGVENMMLFEVVKMGKSAMQSVVDDWIEAYKHSKDVALLDLINFFIQCSGCKG 60

Query: 277 -FPGIQHLGMKYGKILKRDT 295
              G     M+  +I++R T
Sbjct: 61  VVSGEMFRHMQNSEIIRRMT 80



>gi|29336559|sp|Q9DGN1|SA1_XENLA   Cohesin subunit SA-1 (XSA-1) (Stromal antigen 1 homolog) (SCC3
           homolog 1)
 gi|9837121|gb|AAG00430.1|   cohesin subunit XSA1 [Xenopus laevis]
          Length = 1265

 Score =  108 bits (271), Expect = 1e-22
 Identities = 56/85 (65%), Positives = 65/85 (76%), Gaps = 2/85 (2%)

Query: 213 GPNRMNGHHQQNGV-ENMMLFEVVKMGKSAMQSVVDDWIESYKHDRDIALLDLINFFIQC 271
           G  R NGH QQNG  + + LFEVVKMGKSAMQ+VVDDWIESYK DRDIALLDLINFFIQC
Sbjct: 75  GRGRANGHPQQNGEGDPVTLFEVVKMGKSAMQAVVDDWIESYKQDRDIALLDLINFFIQC 134

Query: 272 SGCKAFPGIQHL-GMKYGKILKRDT 295
           SGCK    I+    M+  +I+++ T
Sbjct: 135 SGCKGTVRIEMFRNMQNAEIIRKMT 159



>gi|40352781|gb|AAH64699.1|   STAG1 protein [Homo sapiens]
          Length = 1221

 Score =  108 bits (270), Expect = 1e-22
 Identities = 56/86 (65%), Positives = 66/86 (76%), Gaps = 2/86 (2%)

Query: 212 SGPNRMNGHHQQNGV-ENMMLFEVVKMGKSAMQSVVDDWIESYKHDRDIALLDLINFFIQ 270
           +G  R NGH QQNG  E + LFEVVK+GKSAMQSVVDDWIESYK DRDIALLDLINFFIQ
Sbjct: 67  AGRGRANGHPQQNGEGEPVTLFEVVKLGKSAMQSVVDDWIESYKQDRDIALLDLINFFIQ 126

Query: 271 CSGCKAFPGIQHL-GMKYGKILKRDT 295
           CSGC+    I+    M+  +I+++ T
Sbjct: 127 CSGCRGTVRIEMFRNMQNAEIIRKMT 152



>gi|5032063|ref|NP_005853.1|   stromal antigen 1; nuclear protein stromal antigen 1 [Homo sapiens]
 gi|29336549|sp|Q8WVM7|SA1_HUMAN   Cohesin subunit SA-1 (Stromal antigen 1) (SCC3 homolog 1)
 gi|2204213|emb|CAA99731.1|   nuclear protein SA-1 [Homo sapiens]
          Length = 1258

 Score =  108 bits (270), Expect = 1e-22
 Identities = 56/86 (65%), Positives = 66/86 (76%), Gaps = 2/86 (2%)

Query: 212 SGPNRMNGHHQQNGV-ENMMLFEVVKMGKSAMQSVVDDWIESYKHDRDIALLDLINFFIQ 270
           +G  R NGH QQNG  E + LFEVVK+GKSAMQSVVDDWIESYK DRDIALLDLINFFIQ
Sbjct: 67  AGRGRANGHPQQNGEGEPVTLFEVVKLGKSAMQSVVDDWIESYKQDRDIALLDLINFFIQ 126

Query: 271 CSGCKAFPGIQHL-GMKYGKILKRDT 295
           CSGC+    I+    M+  +I+++ T
Sbjct: 127 CSGCRGTVRIEMFRNMQNAEIIRKMT 152



>gi|34865816|ref|XP_236609.2|   similar to nuclear protein SA-1 [Rattus norvegicus]
          Length = 1235

 Score =  107 bits (267), Expect = 4e-22
 Identities = 55/85 (64%), Positives = 65/85 (76%), Gaps = 2/85 (2%)

Query: 213 GPNRMNGHHQQNGV-ENMMLFEVVKMGKSAMQSVVDDWIESYKHDRDIALLDLINFFIQC 271
           G  R NGH QQNG  + + LFEVVK+GKSAMQSVVDDWIESYK DRDIALLDLINFFIQC
Sbjct: 53  GRGRANGHPQQNGEGDPVTLFEVVKLGKSAMQSVVDDWIESYKQDRDIALLDLINFFIQC 112

Query: 272 SGCKAFPGIQHL-GMKYGKILKRDT 295
           SGC+    I+    M+  +I+++ T
Sbjct: 113 SGCRGTVRIEMFRNMQNAEIIRKMT 137



>gi|26339492|dbj|BAC33417.1|   unnamed protein product [Mus musculus]
          Length = 554

 Score =  104 bits (260), Expect = 2e-21
 Identities = 54/86 (62%), Positives = 65/86 (75%), Gaps = 2/86 (2%)

Query: 212 SGPNRMNGHHQQNGV-ENMMLFEVVKMGKSAMQSVVDDWIESYKHDRDIALLDLINFFIQ 270
           +G  R NGH QQNG  + + LFEVVK+GKSAMQSVVDDWIE YK DRDIALLDLINFFIQ
Sbjct: 67  AGRGRANGHPQQNGDGDPVTLFEVVKLGKSAMQSVVDDWIELYKQDRDIALLDLINFFIQ 126

Query: 271 CSGCKAFPGIQHL-GMKYGKILKRDT 295
           CSGC+    I+    M+  +I+++ T
Sbjct: 127 CSGCRGTVRIEMFRNMQNAEIIRKMT 152



>gi|40254610|ref|NP_033308.2|   stromal antigen 1 [Mus musculus]
 gi|38614373|gb|AAH62954.1|   Stromal antigen 1 [Mus musculus]
          Length = 1258

 Score =  104 bits (259), Expect = 3e-21
 Identities = 54/86 (62%), Positives = 65/86 (75%), Gaps = 2/86 (2%)

Query: 212 SGPNRMNGHHQQNGV-ENMMLFEVVKMGKSAMQSVVDDWIESYKHDRDIALLDLINFFIQ 270
           +G  R NGH QQNG  + + LFEVVK+GKSAMQSVVDDWIE YK DRDIALLDLINFFIQ
Sbjct: 67  AGRGRANGHPQQNGDGDPVTLFEVVKLGKSAMQSVVDDWIELYKQDRDIALLDLINFFIQ 126

Query: 271 CSGCKAFPGIQHL-GMKYGKILKRDT 295
           CSGC+    I+    M+  +I+++ T
Sbjct: 127 CSGCRGTVRIEMFRNMQNAEIIRKMT 152



>gi|29336557|sp|Q9D3E6|SA1_MOUSE   Cohesin subunit SA-1 (Stromal antigen 1) (SCC3 homolog 1)
 gi|7513753|pir||T30252   nuclear protein SA-1 - mouse
 gi|2204230|emb|CAA99733.1|   nuclear protein SA-1 [Mus musculus]
          Length = 1258

 Score =  102 bits (253), Expect = 1e-20
 Identities = 53/86 (61%), Positives = 64/86 (74%), Gaps = 2/86 (2%)

Query: 212 SGPNRMNGHHQQNGV-ENMMLFEVVKMGKSAMQSVVDDWIESYKHDRDIALLDLINFFIQ 270
           +G  R NGH QQNG  + + LFEVVK+GKS MQSVVDDWIE YK DRDIALLDLINFFIQ
Sbjct: 67  AGRGRANGHPQQNGDGDPVTLFEVVKLGKSRMQSVVDDWIELYKQDRDIALLDLINFFIQ 126

Query: 271 CSGCKAFPGIQHL-GMKYGKILKRDT 295
           CSGC+    I+    M+  +I+++ T
Sbjct: 127 CSGCRGTVRIEMFRNMQNAEIIRKMT 152



>gi|12857492|dbj|BAB31022.1|   unnamed protein product [Mus musculus]
          Length = 216

 Score = 97.4 bits (241), Expect = 3e-19
 Identities = 50/65 (76%), Positives = 55/65 (84%), Gaps = 1/65 (1%)

Query: 212 SGPNRMNGHHQQNGV-ENMMLFEVVKMGKSAMQSVVDDWIESYKHDRDIALLDLINFFIQ 270
           +G  R NGH QQNG  + + LFEVVK+GKSAMQSVVDDWIE YK DRDIALLDLINFFIQ
Sbjct: 67  AGRGRANGHPQQNGDGDPVTLFEVVKLGKSAMQSVVDDWIELYKQDRDIALLDLINFFIQ 126

Query: 271 CSGCK 275
           CSGC+
Sbjct: 127 CSGCR 131



>gi|6912686|ref|NP_036579.1|   stromal antigen 3 [Homo sapiens]
 gi|29336569|sp|Q9UJ98|SA3_HUMAN   Cohesin subunit SA-3 (Stromal antigen 3) (SCC3 homolog 3)
 gi|6114601|emb|CAB59367.1|   stromal antigen 3, (STAG3) [Homo sapiens]
          Length = 1225

 Score = 63.2 bits (152), Expect = 6e-09
 Identities = 27/46 (58%), Positives = 34/46 (73%)

Query: 231 LFEVVKMGKSAMQSVVDDWIESYKHDRDIALLDLINFFIQCSGCKA 276
           LF  VK  KS MQS+VD+W++SYK D+D   L+L+NFFIQ  GCK 
Sbjct: 100 LFNAVKAAKSDMQSLVDEWLDSYKQDQDAGFLELVNFFIQSCGCKG 145



>gi|31199647|ref|XP_308771.1|   ENSANGP00000015157 [Anopheles gambiae]
 gi|30178802|gb|EAA04209.2|   ENSANGP00000015157 [Anopheles gambiae str. PEST]
          Length = 1094

 Score = 62.4 bits (150), Expect = 1e-08
 Identities = 29/76 (38%), Positives = 50/76 (65%), Gaps = 3/76 (3%)

Query: 222 QQNGVENMMLFEVVKMGKSAMQSVVDDWIESYKHDRDIALLDLINFFIQCSGCKA--FPG 279
           +++  +   L+ +++  KS + ++VDDWIE YK D+D AL+ L+NFF+  SGCK    P 
Sbjct: 100 RESTTDESSLYYILRHSKSPIATIVDDWIERYKADKDSALIALMNFFVHASGCKGKITPE 159

Query: 280 IQHLGMKYGKILKRDT 295
           +Q  GM++  I+++ T
Sbjct: 160 MQQ-GMEHSGIIRKMT 174



>gi|8394370|ref|NP_058660.1|   stromal antigen 3; stromalin 3 [Mus musculus]
 gi|29336530|sp|O70576|SA3_MOUSE   Cohesin subunit SA-3 (Stromal antigen 3) (SCC3 homolog 3)
 gi|7513755|pir||T30834   nuclear protein SA3 - mouse
 gi|3090423|emb|CAA06669.1|   stag3 [Mus musculus]
          Length = 1240

 Score = 59.7 bits (143), Expect = 7e-08
 Identities = 24/46 (52%), Positives = 35/46 (76%)

Query: 231 LFEVVKMGKSAMQSVVDDWIESYKHDRDIALLDLINFFIQCSGCKA 276
           LF+ VK  +S MQS+VD+W+++YK D +   L+LINFFI+  GCK+
Sbjct: 115 LFDAVKAARSCMQSLVDEWLDNYKQDENAGFLELINFFIRACGCKS 160



>gi|16758546|ref|NP_446182.1|   stromal antigen 3 [Rattus norvegicus]
 gi|29336522|sp|Q99M76|SA3_RAT   Cohesin subunit SA-3 (Stromal antigen 3) (SCC3 homolog 3)
 gi|13195163|gb|AAK13052.1|   stromal antigen 3 [Rattus norvegicus]
          Length = 1256

 Score = 58.2 bits (139), Expect = 2e-07
 Identities = 23/46 (50%), Positives = 34/46 (73%)

Query: 231 LFEVVKMGKSAMQSVVDDWIESYKHDRDIALLDLINFFIQCSGCKA 276
           LF+ VK  +S  QS+VD+W+E+YK D +   L+L+NFFI+  GCK+
Sbjct: 115 LFDAVKAARSCAQSLVDEWLENYKQDENAGFLELVNFFIRACGCKS 160



>gi|17137394|ref|NP_477268.1|   Stromalin CG3423-PA [Drosophila melanogaster]
 gi|7297197|gb|AAF52463.1|   CG3423-PA [Drosophila melanogaster]
          Length = 1116

 Score = 55.8 bits (133), Expect = 1e-06
 Identities = 26/64 (40%), Positives = 39/64 (60%), Gaps = 6/64 (9%)

Query: 219 GHHQQNGVENMM------LFEVVKMGKSAMQSVVDDWIESYKHDRDIALLDLINFFIQCS 272
           GHH++   E  +      L+ +V+  K+ + S+VD WIE YK +R+ AL+ L+ FFI  S
Sbjct: 88  GHHERIDSEREITTDENSLYYIVRHSKNPIASIVDQWIEQYKANRETALVALMQFFINAS 147

Query: 273 GCKA 276
           GCK 
Sbjct: 148 GCKG 151



>gi|16769478|gb|AAL28958.1|   LD34181p [Drosophila melanogaster]
          Length = 1127

 Score = 55.5 bits (132), Expect = 1e-06
 Identities = 26/64 (40%), Positives = 39/64 (60%), Gaps = 6/64 (9%)

Query: 219 GHHQQNGVENMM------LFEVVKMGKSAMQSVVDDWIESYKHDRDIALLDLINFFIQCS 272
           GHH++   E  +      L+ +V+  K+ + S+VD WIE YK +R+ AL+ L+ FFI  S
Sbjct: 99  GHHERIDSEREITTDENSLYYIVRHSKNPIASIVDQWIEQYKANRETALVALMQFFINAS 158

Query: 273 GCKA 276
           GCK 
Sbjct: 159 GCKG 162



>gi|7511978|pir||T13854   nuclear protein SA - fruit fly (Drosophila melanogaster)
 gi|2274928|emb|CAA74654.1|   nuclear protein SA [Drosophila melanogaster]
          Length = 1116

 Score = 53.5 bits (127), Expect = 6e-06
 Identities = 25/64 (39%), Positives = 38/64 (59%), Gaps = 6/64 (9%)

Query: 219 GHHQQNGVENMML------FEVVKMGKSAMQSVVDDWIESYKHDRDIALLDLINFFIQCS 272
           GHH++   E  +       + +V+  K+ + S+VD WIE YK +R+ AL+ L+ FFI  S
Sbjct: 88  GHHERIQSEREITTDENSPYYIVRHSKNPIASIVDQWIEQYKANRETALVALMQFFINAS 147

Query: 273 GCKA 276
           GCK 
Sbjct: 148 GCKG 151



>gi|26335591|dbj|BAC31496.1|   unnamed protein product [Mus musculus]
          Length = 196

 Score = 39.7 bits (91), Expect = 0.087
 Identities = 22/37 (59%), Positives = 26/37 (70%), Gaps = 1/37 (2%)

Query: 212 SGPNRMNGHHQQNGV-ENMMLFEVVKMGKSAMQSVVD 247
           +G  R NGH QQNG  + + LFEVVK+GKSAMQ   D
Sbjct: 67  AGRGRANGHPQQNGDGDPVTLFEVVKLGKSAMQDSGD 103



>gi|22981631|ref|ZP_00027064.1|   COG0454: Histone acetyltransferase HPA2 and related
           acetyltransferases [Ralstonia metallidurans]
          Length = 155

 Score = 37.0 bits (84), Expect = 0.55
 Identities = 20/50 (40%), Positives = 26/50 (52%), Gaps = 4/50 (8%)

Query: 33  GPGLRRTFLPPSPRHPTKDRR----TAARSGPRRKRGQTNELLSLGEPEL 78
           G GL     PP P HPT+DRR        +  RR+RG   +L++L E E 
Sbjct: 66  GIGLMLVDWPPHPAHPTQDRRGYVLNVYVAPTRRRRGLAQQLMALAEAEF 115



>gi|42554108|gb|EAA76951.1|   hypothetical protein FG07139.1 [Gibberella zeae PH-1]
          Length = 1172

 Score = 35.8 bits (81), Expect = 1.1
 Identities = 13/32 (40%), Positives = 20/32 (62%)

Query: 243 QSVVDDWIESYKHDRDIALLDLINFFIQCSGC 274
           +SV ++W+  Y  D   A  DL+N  +QC+GC
Sbjct: 159 KSVAEEWLNKYNDDGAAAFTDLVNCILQCAGC 190



>gi|45187780|ref|NP_984003.1|   ADL093Wp [Eremothecium gossypii]
 gi|44982541|gb|AAS51827.1|   ADL093Wp [Eremothecium gossypii]
          Length = 1120

 Score = 35.4 bits (80), Expect = 1.4
 Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 1/52 (1%)

Query: 223 QNGVENMMLFEVVKMGKS-AMQSVVDDWIESYKHDRDIALLDLINFFIQCSG 273
           Q   E   LF +    +  +++ +  DW+E Y   R  AL + INF + C G
Sbjct: 119 QEDFEPCRLFRIFSTAEDVSVEDIASDWLEEYNASRTGALKEFINFLLNCCG 170



>gi|6322163|ref|NP_012238.1|   Irregular; involved in sister chromatid cohesion; Irr1p
           [Saccharomyces cerevisiae]
 gi|731791|sp|P40541|SCC3_YEAST   Cohesin subunit SCC3 (Irregular cell behavior protein 1)
 gi|1077739|pir||S49956   probable membrane protein YIL026c - yeast (Saccharomyces
           cerevisiae)
 gi|599973|emb|CAA86966.1|   unknown [Saccharomyces cerevisiae]
          Length = 1150

 Score = 34.3 bits (77), Expect = 3.5
 Identities = 13/47 (27%), Positives = 28/47 (59%), Gaps = 1/47 (2%)

Query: 231 LFEVVKMGKS-AMQSVVDDWIESYKHDRDIALLDLINFFIQCSGCKA 276
           LF+++   +  +++ ++ +W+E+Y  +RD  L + IN  + C G  A
Sbjct: 137 LFDILSTSEDVSIEELLREWLETYSENRDKFLQEFINLLLNCCGSVA 183



>gi|619595|gb|AAC49039.1|   unknown
          Length = 1150

 Score = 34.3 bits (77), Expect = 3.5
 Identities = 13/47 (27%), Positives = 28/47 (59%), Gaps = 1/47 (2%)

Query: 231 LFEVVKMGKS-AMQSVVDDWIESYKHDRDIALLDLINFFIQCSGCKA 276
           LF+++   +  +++ ++ +W+E+Y  +RD  L + IN  + C G  A
Sbjct: 137 LFDILSTSEDVSIEELLREWLETYSENRDKFLQEFINLLLNCCGSVA 183



>gi|39583901|emb|CAE63991.1|   Hypothetical protein CBG08584 [Caenorhabditis briggsae]
          Length = 1092

 Score = 33.9 bits (76), Expect = 4.2
 Identities = 19/51 (37%), Positives = 23/51 (45%), Gaps = 1/51 (1%)

Query: 226 VENMMLFEVVKMGKSAMQSVVDDWIESYKHDRDIALLDLINFFIQCSGCKA 276
           VE   L   VK GK  +Q  VD WI  Y     +A  ++  FF    GCK 
Sbjct: 106 VEERELVAAVKSGKK-IQEAVDKWIARYNEKFLVATAEMHQFFFAICGCKG 155



>gi|19114501|ref|NP_593589.1|   hypothetical protein. [Schizosaccharomyces pombe]
 gi|2330727|emb|CAB11229.1|   SPAC17H9.20 [Schizosaccharomyces pombe]
          Length = 563

 Score = 33.5 bits (75), Expect = 5.5
 Identities = 15/44 (34%), Positives = 20/44 (45%)

Query: 231 LFEVVKMGKSAMQSVVDDWIESYKHDRDIALLDLINFFIQCSGC 274
           LF  +   K     +   W   Y  D   AL +LINF ++C GC
Sbjct: 87  LFAFLLDQKVDTMDIAVSWFADYAKDNQSALANLINFILKCCGC 130



>gi|19855048|sp|O13816|SCC3_SCHPO   Cohesin subunit psc3 (SCC3 homolog)
 gi|11359139|pir||T50221   hypothetical protein SPAC607.01 SPAC17H9.20 [imported] - fission
           yeast (Schizosaccharomyces pombe)
          Length = 978

 Score = 33.5 bits (75), Expect = 5.5
 Identities = 15/44 (34%), Positives = 20/44 (45%)

Query: 231 LFEVVKMGKSAMQSVVDDWIESYKHDRDIALLDLINFFIQCSGC 274
           LF  +   K     +   W   Y  D   AL +LINF ++C GC
Sbjct: 87  LFAFLLDQKVDTMDIAVSWFADYAKDNQSALANLINFILKCCGC 130






  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  Mar 9, 2004  2:01 PM
  Number of letters in database: 748,330,716
  Number of sequences in database:  2,678,069
  
Lambda     K      H
   0.318    0.138    0.424 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 79,660,312
Number of Sequences: 2678069
Number of extensions: 2918310
Number of successful extensions: 7564
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 7550
Number of HSP's gapped (non-prelim): 22
length of query: 295
length of database: 748,330,716
effective HSP length: 125
effective length of query: 170
effective length of database: 413,572,091
effective search space: 70307255470
effective search space used: 70307255470
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 73 (32.7 bits)