BLASTN 2.2.8 [Jan-05-2004]

RID: 1079424780-16473-105382685858.BLASTQ3


Database: Database of GenBank+EMBL+DDBJ sequences from EST
Divisions 
           20,179,120 sequences; 10,467,558,903 total letters

 
If you have any problems or questions with the results of this search 
please refer to the BLAST FAQs

Taxonomy reports


Query= hg16_dna_1-36421
         (36,421 letters)

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|8006709|gb|AW872656.1|AW872656  hm26a04.x1 NCI_CGAP_Thy4 ...   802   0.0   
gi|3246194|gb|AI026706.1|AI026706  ov85f08.x1 Soares_testis_...   341   8e-89 
gi|27881382|emb|BX118434.1|BX118434  BX118434 Soares_testis_...   279   3e-70 
gi|29852125|gb|CB763734.1|CB763734  AMGNNUC:SRPB2-00304-A10-...    49   0.76  
gi|7851969|gb|AW800099.1|AW800099  MR2-UM0060-290300-101-h09...    49   0.76  
gi|6505001|gb|AW205529.1|AW205529  UI-H-BI1-adt-d-04-0-UI.s1...    49   0.76  
gi|34476664|emb|BX642331.1|BX642331  DKFZp686F14271_s1 686 (...    47   2.9   
gi|28305447|dbj|BP103159.1|BP103159  BP103159 ORCS bovine li...    47   2.9   
gi|21990256|gb|BQ781784.1|BQ781784  UI-R-FF0-cpa-e-14-0-UI.s...    47   2.9   
gi|20369975|gb|BQ194429.1|BQ194429  UI-R-CN1-cma-d-04-0-UI.s...    47   2.9   
gi|15253368|gb|BI462712.1|BI462712  603202156F1 NIH_MGC_97 H...    47   2.9   
gi|12302769|gb|BF911311.1|BF911311  IL2-UT0073-071100-229-D1...    47   2.9   
gi|11945142|gb|BF671247.1|BF671247  602151091F1 NIH_MGC_81 H...    47   2.9   
gi|11099050|gb|BF205464.1|BF205464  601867852F1 NIH_MGC_17 H...    47   2.9   
gi|8898940|dbj|BB228295.1|BB228295  BB228295 RIKEN full-leng...    47   2.9   
gi|9128038|gb|BE257574.1|BE257574  601109655F1 NIH_MGC_16 Ho...    47   2.9   
gi|8663691|gb|BE184507.1|BE184507  PM1-HT0683-280400-001-c03...    47   2.9   
gi|6936232|gb|AW410691.1|AW410691  fh07g11.x1 NIH_MGC_17 Hom...    47   2.9   
gi|3731168|gb|AI180530.1|AI180530  uc70b06.r1 Soares_mammary...    47   2.9   
gi|3202901|gb|AI002567.1|AI002567  oq90g07.s1 NCI_CGAP_Kid6 ...    47   2.9   
gi|2557027|gb|AA633813.1|AA633813  ac32d07.s1 Stratagene hNT...    47   2.9   

Alignments


>gi|8006709|gb|AW872656.1|AW872656   hm26a04.x1 NCI_CGAP_Thy4 Homo sapiens cDNA clone IMAGE:3013710 3'.
          Length = 443

 Score =  802 bits (417), Expect = 0.0
 Identities = 418/419 (99%)
 Strand = Plus / Plus

                                                                         
Query: 12423 ctaaacatcctcagaggtgcattgtcttctacttatttagccagtacttattttgttgag 12482
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25    ctaaacatcctcagaggtgcattgtcttctacttatttagccagtacttattttgttgag 84

                                                                         
Query: 12483 tgctgctacgggctcagtgctttcttaaacactgcagggctcagtaaagaaaaatactat 12542
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 85    tgctgctacgggctcagtgctttcttaaacactgcagggctcagtaaagaaaaatactat 144

                                                                         
Query: 12543 ttgctcctttcctaagaaagcttacagactggccaacaggcataaagttattagagactg 12602
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145   ttgctcctttcctaagaaagcttacagactggccaacaggcataaagttattagagactg 204

                                                                         
Query: 12603 ggtcacaaggaaataggaagcgagttctccaatacacagaattaatgttgcttctctagt 12662
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205   ggtcacaaggaaataggaagcgagttctccaatacacagaattaatgttgcttctctagt 264

                                                                         
Query: 12663 attgaaagacagcccaatactgacaaggctccctggatgcctgccccagcttccatcatt 12722
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265   attgaaagacagcccaatactgacaaggctccctggatgcctgccccagcttccatcatt 324

                                                                         
Query: 12723 gtcacagcaaacccactgggcccagtgcccaatcatttgcagggatggttacacctgagt 12782
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325   gtcacagcaaacccactgggcccagtgcccaatcatttgcagggatggttacacctgagt 384

                                                                        
Query: 12783 tcttacaacctgggcttgaggtaggaagtgcgtacatagcctgcagacctttgccacat 12841
             |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385   tcttacaacctgngcttgaggtaggaagtgcgtacatagcctgcagacctttgccacat 443



>gi|3246194|gb|AI026706.1|AI026706   ov85f08.x1 Soares_testis_NHT Homo sapiens cDNA clone IMAGE:1644135
            3'.
          Length = 463

 Score =  341 bits (177), Expect = 8e-89
 Identities = 177/177 (100%)
 Strand = Plus / Minus

                                                                        
Query: 4433 tccagaaaatgaacatctgtttacagcttcaattttctaatgattagaatgccacaaaca 4492
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 190  tccagaaaatgaacatctgtttacagcttcaattttctaatgattagaatgccacaaaca 131

                                                                        
Query: 4493 agaaaacccagaggaaagctgttgatgctgaaatgtttccttcctctacatattccatga 4552
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 130  agaaaacccagaggaaagctgttgatgctgaaatgtttccttcctctacatattccatga 71

                                                                     
Query: 4553 tgcgtcctgtggggttatgcaaacagtaatatctcattaaatattctggtctcttgg 4609
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 70   tgcgtcctgtggggttatgcaaacagtaatatctcattaaatattctggtctcttgg 14



 Score =  331 bits (172), Expect = 6e-86
 Identities = 172/172 (100%)
 Strand = Plus / Minus

                                                                        
Query: 1721 cagttccacaaggtactggcacaagaagagtcgtggaagactgacctggccatggcttct 1780
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357  cagttccacaaggtactggcacaagaagagtcgtggaagactgacctggccatggcttct 298

                                                                        
Query: 1781 catgtcccagctcaggacctgccacatcaattctccctttcctctggccgtcacgtgtgg 1840
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 297  catgtcccagctcaggacctgccacatcaattctccctttcctctggccgtcacgtgtgg 238

                                                                
Query: 1841 agtgaaattctcagaagcggctgtccctgtgcacctctctggctgtgtccag 1892
            ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 237  agtgaaattctcagaagcggctgtccctgtgcacctctctggctgtgtccag 186



>gi|27881382|emb|BX118434.1|BX118434   BX118434 Soares_testis_NHT Homo sapiens cDNA clone IMAGp998O164171 ;
            IMAGE:1644135.
          Length = 497

 Score =  279 bits (145), Expect = 3e-70
 Identities = 145/145 (100%)
 Strand = Plus / Plus

                                                                        
Query: 1721 cagttccacaaggtactggcacaagaagagtcgtggaagactgacctggccatggcttct 1780
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353  cagttccacaaggtactggcacaagaagagtcgtggaagactgacctggccatggcttct 412

                                                                        
Query: 1781 catgtcccagctcaggacctgccacatcaattctccctttcctctggccgtcacgtgtgg 1840
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413  catgtcccagctcaggacctgccacatcaattctccctttcctctggccgtcacgtgtgg 472

                                     
Query: 1841 agtgaaattctcagaagcggctgtc 1865
            |||||||||||||||||||||||||
Sbjct: 473  agtgaaattctcagaagcggctgtc 497



>gi|29852125|gb|CB763734.1|CB763734   AMGNNUC:SRPB2-00304-A10-A srpb2 (10220) Rattus norvegicus cDNA clone
             srpb2-00304-a10 5'.
          Length = 422

 Score = 48.8 bits (25), Expect = 0.76
 Identities = 34/38 (89%), Gaps = 2/38 (5%)
 Strand = Plus / Minus

                                                   
Query: 17833 gaagggaaagaatgagggagagaaaggagaagagggag 17870
             |||||||||||||||||||| ||  ||||||| |||||
Sbjct: 335   gaagggaaagaatgagggagggag-ggagaag-gggag 300



>gi|7851969|gb|AW800099.1|AW800099   MR2-UM0060-290300-101-h09 UM0060 Homo sapiens cDNA.
          Length = 245

 Score = 48.8 bits (25), Expect = 0.76
 Identities = 28/29 (96%), Gaps = 1/29 (3%)
 Strand = Plus / Plus

                                         
Query: 3911 ctgtctgtttctctctgtctcccatctct 3939
            ||||||||||||||||||||||| |||||
Sbjct: 150  ctgtctgtttctctctgtctccc-tctct 177



>gi|6505001|gb|AW205529.1|AW205529   UI-H-BI1-adt-d-04-0-UI.s1 NCI_CGAP_Sub3 Homo sapiens cDNA clone
             IMAGE:2717983 3'.
          Length = 443

 Score = 48.8 bits (25), Expect = 0.76
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                         
Query: 11957 actgttctgtcaaccttactcattcatt 11984
             ||||| ||||||||||||||||||||||
Sbjct: 343   actgtgctgtcaaccttactcattcatt 370



>gi|34476664|emb|BX642331.1|BX642331   DKFZp686F14271_s1 686 (synonym: hlcc3) Homo sapiens cDNA clone
            DKFZp686F14271 3'.
          Length = 536

 Score = 46.8 bits (24), Expect = 2.9
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                       
Query: 7315 cattcattcagccattcaacaaatatt 7341
            ||||||||||||||||||| |||||||
Sbjct: 514  cattcattcagccattcaataaatatt 488



>gi|28305447|dbj|BP103159.1|BP103159   BP103159 ORCS bovine liver cDNA Bos taurus cDNA clone ORCS24148 3'.
          Length = 375

 Score = 46.8 bits (24), Expect = 2.9
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                     
Query: 15573 agttacaaagtggcagcagacagc 15596
             ||||||||||||||||||||||||
Sbjct: 239   agttacaaagtggcagcagacagc 216



>gi|21990256|gb|BQ781784.1|BQ781784   UI-R-FF0-cpa-e-14-0-UI.s1 UI-R-FF0 Rattus norvegicus cDNA clone
             UI-R-FF0-cpa-e-14-0-UI 3'.
          Length = 701

 Score = 46.8 bits (24), Expect = 2.9
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                           
Query: 15361 gttaccacctgagctcagtcccccggcccc 15390
             |||||||||||||||||||  |||||||||
Sbjct: 291   gttaccacctgagctcagtggcccggcccc 320



>gi|20369975|gb|BQ194429.1|BQ194429   UI-R-CN1-cma-d-04-0-UI.s1 UI-R-CN1 Rattus norvegicus cDNA clone
            UI-R-CN1-cma-d-04-0-UI 3'.
          Length = 756

 Score = 46.8 bits (24), Expect = 2.9
 Identities = 27/28 (96%), Gaps = 1/28 (3%)
 Strand = Plus / Minus

                                        
Query: 3914 tctgtttctctctgtctc-ccatctctg 3940
            |||||||||||||||||| |||||||||
Sbjct: 689  tctgtttctctctgtctcnccatctctg 662



>gi|15253368|gb|BI462712.1|BI462712   603202156F1 NIH_MGC_97 Homo sapiens cDNA clone IMAGE:5268324 5'.
          Length = 827

 Score = 46.8 bits (24), Expect = 2.9
 Identities = 31/34 (91%), Gaps = 2/34 (5%)
 Strand = Plus / Minus

                                               
Query: 11013 cctgcaagg-gacccctgctgcctgggctgcctg 11045
             ||| ||||| |||||| |||||||||||||||||
Sbjct: 113   cctccaaggagacccc-gctgcctgggctgcctg 81



>gi|12302769|gb|BF911311.1|BF911311   IL2-UT0073-071100-229-D11 UT0073 Homo sapiens cDNA.
          Length = 345

 Score = 46.8 bits (24), Expect = 2.9
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                    
Query: 3908 tttctgtctgtttctctctgtctc 3931
            ||||||||||||||||||||||||
Sbjct: 225  tttctgtctgtttctctctgtctc 248



>gi|11945142|gb|BF671247.1|BF671247   602151091F1 NIH_MGC_81 Homo sapiens cDNA clone IMAGE:4291990 5'.
          Length = 565

 Score = 46.8 bits (24), Expect = 2.9
 Identities = 32/36 (88%)
 Strand = Plus / Plus

                                                
Query: 7315 cattcattcagccattcaacaaatattaattaggaa 7350
            ||||||||||  ||||||||||||||||| || |||
Sbjct: 501  cattcattcattcattcaacaaatattaagtaagaa 536



>gi|11099050|gb|BF205464.1|BF205464   601867852F1 NIH_MGC_17 Homo sapiens cDNA clone IMAGE:4110397 5'.
          Length = 640

 Score = 46.8 bits (24), Expect = 2.9
 Identities = 31/34 (91%), Gaps = 2/34 (5%)
 Strand = Plus / Minus

                                               
Query: 11013 cctgcaagg-gacccctgctgcctgggctgcctg 11045
             ||| ||||| |||||| |||||||||||||||||
Sbjct: 109   cctccaaggagacccc-gctgcctgggctgcctg 77



>gi|8898940|dbj|BB228295.1|BB228295   BB228295 RIKEN full-length enriched, 3 days neonate thymus Mus
            musculus cDNA clone A630011O19 3'.
          Length = 258

 Score = 46.8 bits (24), Expect = 2.9
 Identities = 29/31 (93%), Gaps = 2/31 (6%)
 Strand = Plus / Plus

                                           
Query: 2625 cctctacatttctatattcaggagcactgtg 2655
            |||||| |||||||||||||||||| |||||
Sbjct: 141  cctcta-atttctatattcaggagc-ctgtg 169



>gi|9128038|gb|BE257574.1|BE257574   601109655F1 NIH_MGC_16 Homo sapiens cDNA clone IMAGE:3350581 5'.
          Length = 646

 Score = 46.8 bits (24), Expect = 2.9
 Identities = 34/38 (89%), Gaps = 3/38 (7%)
 Strand = Plus / Plus

                                                   
Query: 14663 cct-cctgcctctttgctgctctgcatgtgacctgctg 14699
             ||| |||||| || |||||||||||||||| |||||||
Sbjct: 196   cctgcctgcc-ctgtgctgctctgcatgtg-cctgctg 231



>gi|8663691|gb|BE184507.1|BE184507   PM1-HT0683-280400-001-c03 HT0683 Homo sapiens cDNA.
          Length = 380

 Score = 46.8 bits (24), Expect = 2.9
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                    
Query: 3908 tttctgtctgtttctctctgtctc 3931
            ||||||||||||||||||||||||
Sbjct: 279  tttctgtctgtttctctctgtctc 302



>gi|6936232|gb|AW410691.1|AW410691   fh07g11.x1 NIH_MGC_17 Homo sapiens cDNA clone IMAGE:2961620 5'.
          Length = 580

 Score = 46.8 bits (24), Expect = 2.9
 Identities = 31/34 (91%), Gaps = 2/34 (5%)
 Strand = Plus / Minus

                                               
Query: 11013 cctgcaagg-gacccctgctgcctgggctgcctg 11045
             ||| ||||| |||||| |||||||||||||||||
Sbjct: 128   cctccaaggagacccc-gctgcctgggctgcctg 96



>gi|3731168|gb|AI180530.1|AI180530   uc70b06.r1 Soares_mammary_gland_NbMMG Mus musculus cDNA clone
            IMAGE:1430963 5' similar to TR:O14612 O14612 HYPOTHETICAL
            17.8 KD PROTEIN. ;.
          Length = 425

 Score = 46.8 bits (24), Expect = 2.9
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                          
Query: 3910 tctgtctgtttctctctgtctcccatctct 3939
            ||||||||||||||||| ||||| ||||||
Sbjct: 49   tctgtctgtttctctctctctccaatctct 20



>gi|3202901|gb|AI002567.1|AI002567   oq90g07.s1 NCI_CGAP_Kid6 Homo sapiens cDNA clone IMAGE:1593660 3'
            similar to contains MER22.t1 MER22 repetitive element ;.
          Length = 412

 Score = 46.8 bits (24), Expect = 2.9
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                             
Query: 3908 tttctgtctgtttctctctgtctcccatctctg 3940
            ||||||||||||||||||||||| |  ||||||
Sbjct: 152  tttctgtctgtttctctctgtcttctttctctg 120



>gi|2557027|gb|AA633813.1|AA633813   ac32d07.s1 Stratagene hNT neuron (#937233) Homo sapiens cDNA clone
            IMAGE:858157 3' similar to contains element MER35
            repetitive element ;.
          Length = 402

 Score = 46.8 bits (24), Expect = 2.9
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                    
Query: 3908 tttctgtctgtttctctctgtctc 3931
            ||||||||||||||||||||||||
Sbjct: 100  tttctgtctgtttctctctgtctc 123






  Database: Database of GenBank+EMBL+DDBJ sequences from EST Divisions
    Posted date:  Mar 9, 2004  6:59 AM
  Number of letters in database: -494,894,157
  Number of sequences in database:  8,519,835
  
Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.33    0.621     1.12 


Matrix: blastn matrix:1 -2
Gap Penalties: Existence: 0, Extension: 0
Number of Hits to DB: 510,598
Number of Sequences: 11659285
Number of extensions: 2766
Number of successful extensions: 2666
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 0
length of query: 72,844
length of database: 5,473,091,264
effective HSP length: 29
effective length of query: 36,392
effective length of database: 5,158,350,784
effective search space: 187722701731328
effective search space used:        0
S2: 23 (44.9 bits)







 


 
Format
  


 


 
Show
  Graphical OverviewLinkoutSequence RetrievalNCBI-giAlignmentPSSMBioseq in HTMLPlain textASN.1XMLformat


 


 
Use new formatter
  Masking CharacterDefault(X for protein, n for nucleotide)Lower Case
Masking ColorBlackGreyRed



 


 
Number of:
  Descriptions010501002505001000
Alignments010501002505001000



 


 
Alignment view
  PairwisePairwise with identitiesquery-anchored with identitiesquery-anchored without identitiesflat query-anchored with identitiesflat query-anchored without identitiesHit Table


 


 
Start formatting from query # 
  


 


 
Limit results by entrez query
   or select from:All organismsViruses [ORGN]Archaea [ORGN]Bacteria [ORGN]Eukaryota [ORGN]Viridiplantae [ORGN]Fungi [ORGN]Metazoa [ORGN]Arthropoda [ORGN]Vertebrata [ORGN]Mammalia [ORGN]Rodentia [ORGN]Primates [ORGN]-------------------Aeropyrum pernix [ORGN]Aquifex aeolicus [ORGN]Arabidopsis thaliana [ORGN]Bacillus subtilis [ORGN]Bos taurus [ORGN]Caenorhabditis elegans [ORGN]Canis familiaris[ORGN]Danio rerio [ORGN]Dictyostelium discoideum [ORGN]Drosophila melanogaster [ORGN]Escherichia coli [ORGN]Gallus gallus [ORGN]Homo sapiens [ORGN]Human immunodeficiency virus type 1 [ORGN]Methanococcus jannaschii [ORGN]Mus musculus [ORGN]Oryctolagus cuniculus [ORGN]Oryza sativa [ORGN]Ovis aries [ORGN]Plasmodium falciparum [ORGN]Rattus norvegicus [ORGN]Saccharomyces cerevisiae [ORGN]Schizosaccharomyces pombe [ORGN]Xenopus tropicalis[ORGN]Simian immunodeficiency virus [ORGN]Sus scrofa[ORGN]Synechocystis PCC6803 [ORGN]Takifugu rubripes [ORGN]Xenopus laevis [ORGN]Zea mays [ORGN]


 


 
Expect value range:
    


 


 
Results file
  







 or