BLASTN 2.2.8 [Jan-05-2004]

RID: 1079195825-10264-201177041131.BLASTQ3


Database: GenBank Human EST entries 
           5,487,412 sequences; 2,962,656,327 total letters

 
If you have any problems or questions with the results of this search 
please refer to the BLAST FAQs

Taxonomy reports


Query= hg16_dna_1-36421
         (36,421 letters)

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|8006709|gb|AW872656.1|AW872656  hm26a04.x1 NCI_CGAP_Thy4 ...   802   0.0   
gi|3246194|gb|AI026706.1|AI026706  ov85f08.x1 Soares_testis_...   341   2e-89 
gi|27881382|emb|BX118434.1|BX118434  BX118434 Soares_testis_...   279   8e-71 
gi|7851969|gb|AW800099.1|AW800099  MR2-UM0060-290300-101-h09...    49   0.21  
gi|6505001|gb|AW205529.1|AW205529  UI-H-BI1-adt-d-04-0-UI.s1...    49   0.21  
gi|34476664|emb|BX642331.1|BX642331  DKFZp686F14271_s1 686 (...    47   0.81  
gi|15253368|gb|BI462712.1|BI462712  603202156F1 NIH_MGC_97 H...    47   0.81  
gi|12302769|gb|BF911311.1|BF911311  IL2-UT0073-071100-229-D1...    47   0.81  
gi|11945142|gb|BF671247.1|BF671247  602151091F1 NIH_MGC_81 H...    47   0.81  
gi|11099050|gb|BF205464.1|BF205464  601867852F1 NIH_MGC_17 H...    47   0.81  
gi|9128038|gb|BE257574.1|BE257574  601109655F1 NIH_MGC_16 Ho...    47   0.81  
gi|8663691|gb|BE184507.1|BE184507  PM1-HT0683-280400-001-c03...    47   0.81  
gi|6936232|gb|AW410691.1|AW410691  fh07g11.x1 NIH_MGC_17 Hom...    47   0.81  
gi|3202901|gb|AI002567.1|AI002567  oq90g07.s1 NCI_CGAP_Kid6 ...    47   0.81  
gi|2557027|gb|AA633813.1|AA633813  ac32d07.s1 Stratagene hNT...    47   0.81  
gi|24036837|gb|BU851874.1|BU851874  AGENCOURT_10428198 NIH_M...    45   3.1   
gi|22828942|gb|BU521416.1|BU521416  AGENCOURT_10167559 NIH_M...    45   3.1   
gi|13043892|gb|BG288745.1|BG288745  602385564F1 NIH_MGC_93 H...    45   3.1   
gi|9776748|gb|BE548103.1|BE548103  601072345F1 NIH_MGC_12 Ho...    45   3.1   
gi|7850641|gb|AW798771.1|AW798771  RC2-UM0050-200300-015-d05...    45   3.1   
gi|703477|gb|T80592.1|T80592  yd23b04.s1 Soares fetal liver ...    45   3.1   

Alignments


>gi|8006709|gb|AW872656.1|AW872656   hm26a04.x1 NCI_CGAP_Thy4 Homo sapiens cDNA clone IMAGE:3013710 3'.
          Length = 443

 Score =  802 bits (417), Expect = 0.0
 Identities = 418/419 (99%)
 Strand = Plus / Plus

                                                                         
Query: 12423 ctaaacatcctcagaggtgcattgtcttctacttatttagccagtacttattttgttgag 12482
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25    ctaaacatcctcagaggtgcattgtcttctacttatttagccagtacttattttgttgag 84

                                                                         
Query: 12483 tgctgctacgggctcagtgctttcttaaacactgcagggctcagtaaagaaaaatactat 12542
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 85    tgctgctacgggctcagtgctttcttaaacactgcagggctcagtaaagaaaaatactat 144

                                                                         
Query: 12543 ttgctcctttcctaagaaagcttacagactggccaacaggcataaagttattagagactg 12602
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145   ttgctcctttcctaagaaagcttacagactggccaacaggcataaagttattagagactg 204

                                                                         
Query: 12603 ggtcacaaggaaataggaagcgagttctccaatacacagaattaatgttgcttctctagt 12662
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205   ggtcacaaggaaataggaagcgagttctccaatacacagaattaatgttgcttctctagt 264

                                                                         
Query: 12663 attgaaagacagcccaatactgacaaggctccctggatgcctgccccagcttccatcatt 12722
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265   attgaaagacagcccaatactgacaaggctccctggatgcctgccccagcttccatcatt 324

                                                                         
Query: 12723 gtcacagcaaacccactgggcccagtgcccaatcatttgcagggatggttacacctgagt 12782
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325   gtcacagcaaacccactgggcccagtgcccaatcatttgcagggatggttacacctgagt 384

                                                                        
Query: 12783 tcttacaacctgggcttgaggtaggaagtgcgtacatagcctgcagacctttgccacat 12841
             |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385   tcttacaacctgngcttgaggtaggaagtgcgtacatagcctgcagacctttgccacat 443



>gi|3246194|gb|AI026706.1|AI026706   ov85f08.x1 Soares_testis_NHT Homo sapiens cDNA clone IMAGE:1644135
            3'.
          Length = 463

 Score =  341 bits (177), Expect = 2e-89
 Identities = 177/177 (100%)
 Strand = Plus / Minus

                                                                        
Query: 4433 tccagaaaatgaacatctgtttacagcttcaattttctaatgattagaatgccacaaaca 4492
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 190  tccagaaaatgaacatctgtttacagcttcaattttctaatgattagaatgccacaaaca 131

                                                                        
Query: 4493 agaaaacccagaggaaagctgttgatgctgaaatgtttccttcctctacatattccatga 4552
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 130  agaaaacccagaggaaagctgttgatgctgaaatgtttccttcctctacatattccatga 71

                                                                     
Query: 4553 tgcgtcctgtggggttatgcaaacagtaatatctcattaaatattctggtctcttgg 4609
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 70   tgcgtcctgtggggttatgcaaacagtaatatctcattaaatattctggtctcttgg 14



 Score =  331 bits (172), Expect = 2e-86
 Identities = 172/172 (100%)
 Strand = Plus / Minus

                                                                        
Query: 1721 cagttccacaaggtactggcacaagaagagtcgtggaagactgacctggccatggcttct 1780
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357  cagttccacaaggtactggcacaagaagagtcgtggaagactgacctggccatggcttct 298

                                                                        
Query: 1781 catgtcccagctcaggacctgccacatcaattctccctttcctctggccgtcacgtgtgg 1840
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 297  catgtcccagctcaggacctgccacatcaattctccctttcctctggccgtcacgtgtgg 238

                                                                
Query: 1841 agtgaaattctcagaagcggctgtccctgtgcacctctctggctgtgtccag 1892
            ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 237  agtgaaattctcagaagcggctgtccctgtgcacctctctggctgtgtccag 186



>gi|27881382|emb|BX118434.1|BX118434   BX118434 Soares_testis_NHT Homo sapiens cDNA clone IMAGp998O164171 ;
            IMAGE:1644135.
          Length = 497

 Score =  279 bits (145), Expect = 8e-71
 Identities = 145/145 (100%)
 Strand = Plus / Plus

                                                                        
Query: 1721 cagttccacaaggtactggcacaagaagagtcgtggaagactgacctggccatggcttct 1780
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353  cagttccacaaggtactggcacaagaagagtcgtggaagactgacctggccatggcttct 412

                                                                        
Query: 1781 catgtcccagctcaggacctgccacatcaattctccctttcctctggccgtcacgtgtgg 1840
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413  catgtcccagctcaggacctgccacatcaattctccctttcctctggccgtcacgtgtgg 472

                                     
Query: 1841 agtgaaattctcagaagcggctgtc 1865
            |||||||||||||||||||||||||
Sbjct: 473  agtgaaattctcagaagcggctgtc 497



>gi|7851969|gb|AW800099.1|AW800099   MR2-UM0060-290300-101-h09 UM0060 Homo sapiens cDNA.
          Length = 245

 Score = 48.8 bits (25), Expect = 0.21
 Identities = 28/29 (96%), Gaps = 1/29 (3%)
 Strand = Plus / Plus

                                         
Query: 3911 ctgtctgtttctctctgtctcccatctct 3939
            ||||||||||||||||||||||| |||||
Sbjct: 150  ctgtctgtttctctctgtctccc-tctct 177



>gi|6505001|gb|AW205529.1|AW205529   UI-H-BI1-adt-d-04-0-UI.s1 NCI_CGAP_Sub3 Homo sapiens cDNA clone
             IMAGE:2717983 3'.
          Length = 443

 Score = 48.8 bits (25), Expect = 0.21
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                         
Query: 11957 actgttctgtcaaccttactcattcatt 11984
             ||||| ||||||||||||||||||||||
Sbjct: 343   actgtgctgtcaaccttactcattcatt 370



>gi|34476664|emb|BX642331.1|BX642331   DKFZp686F14271_s1 686 (synonym: hlcc3) Homo sapiens cDNA clone
            DKFZp686F14271 3'.
          Length = 536

 Score = 46.8 bits (24), Expect = 0.81
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                       
Query: 7315 cattcattcagccattcaacaaatatt 7341
            ||||||||||||||||||| |||||||
Sbjct: 514  cattcattcagccattcaataaatatt 488



>gi|15253368|gb|BI462712.1|BI462712   603202156F1 NIH_MGC_97 Homo sapiens cDNA clone IMAGE:5268324 5'.
          Length = 827

 Score = 46.8 bits (24), Expect = 0.81
 Identities = 31/34 (91%), Gaps = 2/34 (5%)
 Strand = Plus / Minus

                                               
Query: 11013 cctgcaagg-gacccctgctgcctgggctgcctg 11045
             ||| ||||| |||||| |||||||||||||||||
Sbjct: 113   cctccaaggagacccc-gctgcctgggctgcctg 81



>gi|12302769|gb|BF911311.1|BF911311   IL2-UT0073-071100-229-D11 UT0073 Homo sapiens cDNA.
          Length = 345

 Score = 46.8 bits (24), Expect = 0.81
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                    
Query: 3908 tttctgtctgtttctctctgtctc 3931
            ||||||||||||||||||||||||
Sbjct: 225  tttctgtctgtttctctctgtctc 248



>gi|11945142|gb|BF671247.1|BF671247   602151091F1 NIH_MGC_81 Homo sapiens cDNA clone IMAGE:4291990 5'.
          Length = 565

 Score = 46.8 bits (24), Expect = 0.81
 Identities = 32/36 (88%)
 Strand = Plus / Plus

                                                
Query: 7315 cattcattcagccattcaacaaatattaattaggaa 7350
            ||||||||||  ||||||||||||||||| || |||
Sbjct: 501  cattcattcattcattcaacaaatattaagtaagaa 536



>gi|11099050|gb|BF205464.1|BF205464   601867852F1 NIH_MGC_17 Homo sapiens cDNA clone IMAGE:4110397 5'.
          Length = 640

 Score = 46.8 bits (24), Expect = 0.81
 Identities = 31/34 (91%), Gaps = 2/34 (5%)
 Strand = Plus / Minus

                                               
Query: 11013 cctgcaagg-gacccctgctgcctgggctgcctg 11045
             ||| ||||| |||||| |||||||||||||||||
Sbjct: 109   cctccaaggagacccc-gctgcctgggctgcctg 77



>gi|9128038|gb|BE257574.1|BE257574   601109655F1 NIH_MGC_16 Homo sapiens cDNA clone IMAGE:3350581 5'.
          Length = 646

 Score = 46.8 bits (24), Expect = 0.81
 Identities = 34/38 (89%), Gaps = 3/38 (7%)
 Strand = Plus / Plus

                                                   
Query: 14663 cct-cctgcctctttgctgctctgcatgtgacctgctg 14699
             ||| |||||| || |||||||||||||||| |||||||
Sbjct: 196   cctgcctgcc-ctgtgctgctctgcatgtg-cctgctg 231



>gi|8663691|gb|BE184507.1|BE184507   PM1-HT0683-280400-001-c03 HT0683 Homo sapiens cDNA.
          Length = 380

 Score = 46.8 bits (24), Expect = 0.81
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                    
Query: 3908 tttctgtctgtttctctctgtctc 3931
            ||||||||||||||||||||||||
Sbjct: 279  tttctgtctgtttctctctgtctc 302



>gi|6936232|gb|AW410691.1|AW410691   fh07g11.x1 NIH_MGC_17 Homo sapiens cDNA clone IMAGE:2961620 5'.
          Length = 580

 Score = 46.8 bits (24), Expect = 0.81
 Identities = 31/34 (91%), Gaps = 2/34 (5%)
 Strand = Plus / Minus

                                               
Query: 11013 cctgcaagg-gacccctgctgcctgggctgcctg 11045
             ||| ||||| |||||| |||||||||||||||||
Sbjct: 128   cctccaaggagacccc-gctgcctgggctgcctg 96



>gi|3202901|gb|AI002567.1|AI002567   oq90g07.s1 NCI_CGAP_Kid6 Homo sapiens cDNA clone IMAGE:1593660 3'
            similar to contains MER22.t1 MER22 repetitive element ;.
          Length = 412

 Score = 46.8 bits (24), Expect = 0.81
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                             
Query: 3908 tttctgtctgtttctctctgtctcccatctctg 3940
            ||||||||||||||||||||||| |  ||||||
Sbjct: 152  tttctgtctgtttctctctgtcttctttctctg 120



>gi|2557027|gb|AA633813.1|AA633813   ac32d07.s1 Stratagene hNT neuron (#937233) Homo sapiens cDNA clone
            IMAGE:858157 3' similar to contains element MER35
            repetitive element ;.
          Length = 402

 Score = 46.8 bits (24), Expect = 0.81
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                    
Query: 3908 tttctgtctgtttctctctgtctc 3931
            ||||||||||||||||||||||||
Sbjct: 100  tttctgtctgtttctctctgtctc 123



>gi|24036837|gb|BU851874.1|BU851874   AGENCOURT_10428198 NIH_MGC_141 Homo sapiens cDNA clone IMAGE:6603417
             5'.
          Length = 849

 Score = 44.9 bits (23), Expect = 3.1
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 15333 cgggggtccccggggggcttttt 15355
             |||||||||||||||||||||||
Sbjct: 424   cgggggtccccggggggcttttt 446



>gi|22828942|gb|BU521416.1|BU521416   AGENCOURT_10167559 NIH_MGC_71 Homo sapiens cDNA clone IMAGE:6527264
            5'.
          Length = 896

 Score = 44.9 bits (23), Expect = 3.1
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                   
Query: 3908 tttctgtctgtttctctctgtct 3930
            |||||||||||||||||||||||
Sbjct: 275  tttctgtctgtttctctctgtct 297



>gi|13043892|gb|BG288745.1|BG288745   602385564F1 NIH_MGC_93 Homo sapiens cDNA clone IMAGE:4514558 5'.
          Length = 1149

 Score = 44.9 bits (23), Expect = 3.1
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                   
Query: 4196 gtctttctttctcttttttctcc 4218
            |||||||||||||||||||||||
Sbjct: 598  gtctttctttctcttttttctcc 576



>gi|9776748|gb|BE548103.1|BE548103   601072345F1 NIH_MGC_12 Homo sapiens cDNA clone IMAGE:3458411 5'.
          Length = 905

 Score = 44.9 bits (23), Expect = 3.1
 Identities = 39/46 (84%), Gaps = 3/46 (6%)
 Strand = Plus / Minus

                                                           
Query: 20510 aatca-ctattattttcaaatattgttgtgtttgctctaaagtcct 20554
             ||||| ||| |||||||||||||||||| |||| |   ||||||||
Sbjct: 58    aatcagctactattttcaaatattgttg-gttt-caggaaagtcct 15



>gi|7850641|gb|AW798771.1|AW798771   RC2-UM0050-200300-015-d05 UM0050 Homo sapiens cDNA.
          Length = 160

 Score = 44.9 bits (23), Expect = 3.1
 Identities = 30/33 (90%), Gaps = 2/33 (6%)
 Strand = Plus / Plus

                                             
Query: 3908 tttctgtctgtttctctctgtctcccatctctg 3940
            ||||||||||||||||||| |||||  ||||||
Sbjct: 14   tttctgtctgtttctctctctctcc--tctctg 44



>gi|703477|gb|T80592.1|T80592   yd23b04.s1 Soares fetal liver spleen 1NFLS Homo sapiens cDNA clone
             IMAGE:109039 3'.
          Length = 398

 Score = 44.9 bits (23), Expect = 3.1
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 20012 tgaccccttcctgggaggccttc 20034
             |||||||||||||||||||||||
Sbjct: 275   tgaccccttcctgggaggccttc 253






  Database: GenBank Human EST entries
    Posted date:  Mar 9, 2004  6:59 AM
  Number of letters in database: 1,697,910,368
  Number of sequences in database:  3,678,000
  
Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.33    0.621     1.12 


Matrix: blastn matrix:1 -2
Gap Penalties: Existence: 0, Extension: 0
Number of Hits to DB: 392,361
Number of Sequences: 15337285
Number of extensions: 2130
Number of successful extensions: 2032
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 0
length of query: 72,844
length of database: 2,962,656,327
effective HSP length: 29
effective length of query: 36,392
effective length of database: 2,803,521,379
effective search space: 102025750024568
effective search space used:        0
S2: 23 (44.9 bits)







 


 
Format
  


 


 
Show
  Graphical OverviewLinkoutSequence RetrievalNCBI-giAlignmentPSSMBioseq in HTMLPlain textASN.1XMLformat


 


 
Use new formatter
  Masking CharacterDefault(X for protein, n for nucleotide)Lower Case
Masking ColorBlackGreyRed



 


 
Number of:
  Descriptions010501002505001000
Alignments010501002505001000



 


 
Alignment view
  PairwisePairwise with identitiesquery-anchored with identitiesquery-anchored without identitiesflat query-anchored with identitiesflat query-anchored without identitiesHit Table


 


 
Start formatting from query # 
  


 


 
Limit results by entrez query
   or select from:All organismsViruses [ORGN]Archaea [ORGN]Bacteria [ORGN]Eukaryota [ORGN]Viridiplantae [ORGN]Fungi [ORGN]Metazoa [ORGN]Arthropoda [ORGN]Vertebrata [ORGN]Mammalia [ORGN]Rodentia [ORGN]Primates [ORGN]-------------------Aeropyrum pernix [ORGN]Aquifex aeolicus [ORGN]Arabidopsis thaliana [ORGN]Bacillus subtilis [ORGN]Bos taurus [ORGN]Caenorhabditis elegans [ORGN]Canis familiaris[ORGN]Danio rerio [ORGN]Dictyostelium discoideum [ORGN]Drosophila melanogaster [ORGN]Escherichia coli [ORGN]Gallus gallus [ORGN]Homo sapiens [ORGN]Human immunodeficiency virus type 1 [ORGN]Methanococcus jannaschii [ORGN]Mus musculus [ORGN]Oryctolagus cuniculus [ORGN]Oryza sativa [ORGN]Ovis aries [ORGN]Plasmodium falciparum [ORGN]Rattus norvegicus [ORGN]Saccharomyces cerevisiae [ORGN]Schizosaccharomyces pombe [ORGN]Xenopus tropicalis[ORGN]Simian immunodeficiency virus [ORGN]Sus scrofa[ORGN]Synechocystis PCC6803 [ORGN]Takifugu rubripes [ORGN]Xenopus laevis [ORGN]Zea mays [ORGN]


 


 
Expect value range:
    


 


 
Results file
  







 or