BLASTP 2.2.8 [Jan-05-2004]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

RID: 1079517392-24662-5023640350.BLASTQ3

Query= hg16_dna|GENSCAN_predicted_peptide_1
         (125 letters)


Database: Non-redundant SwissProt sequences 
           145,815 sequences; 53,526,777 total letters

 
If you have any problems or questions with the results of this search 
please refer to the BLAST FAQs

Taxonomy reports

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|8469184|sp|Q00657|PGG2_RAT  Chondroitin sulfate proteogly...    31   0.49  
gi|464367|sp|Q05091|PGIP_PYRCO  Polygalacturonase inhibitor ...    28   2.4   
gi|17433762|sp|Q56128|RCSC_SALTI  Sensor protein rcsC (Capsu...    28   2.8   
gi|20139412|sp|P58662|RCSC_SALTY  Sensor protein rcsC (Capsu...    28   2.8   
gi|2495017|sp|Q98907|P2Y3_CHICK  P2Y purinoceptor 3 (P2Y3) (...    28   4.3   
gi|10720180|sp|O93361|P2Y3_MELGA  P2Y purinoceptor 3 (P2Y3) ...    28   4.5   
gi|549317|sp|P35930|VGNB_RCMV  Genome polyprotein B [Contain...    27   5.3   
gi|13431893|sp|P57859|SYFB_PASMU  Phenylalanyl-tRNA syntheta...    27   6.3   
gi|6225773|sp|O43010|NMT_SCHPO  Probable glycylpeptide N-tet...    27   6.5   
gi|17433741|sp|P14376|RCSC_ECOLI  Sensor protein rcsC (Capsu...    27   6.5   
gi|14194968|sp|Q9UVX3|NMT_ASPFU  Glycylpeptide N-tetradecano...    27   6.8   
gi|120785|sp|P21548|GAC2_CHICK  Gamma-aminobutyric-acid rece...    27   9.5   

Alignments


>gi|8469184|sp|Q00657|PGG2_RAT   Chondroitin sulfate proteoglycan NG2 precursor (HSN tumor-specific
            antigen)
          Length = 2326

 Score = 30.8 bits (68), Expect = 0.49
 Identities = 18/35 (51%), Positives = 21/35 (60%), Gaps = 3/35 (8%)

Query: 62   VKFSEAAVPVHLSGCVQ---ALVGAIQPLQLQQHK 93
            +  S AA PVH S  +Q   AL G + PLQL QHK
Sbjct: 1215 LALSVAAGPVHTSTVLQVTIALEGPLAPLQLVQHK 1249



>gi|464367|sp|Q05091|PGIP_PYRCO   Polygalacturonase inhibitor precursor (Polygalacturonase-inhibiting
           protein)
          Length = 330

 Score = 28.5 bits (62), Expect = 2.4
 Identities = 21/55 (38%), Positives = 32/55 (58%), Gaps = 3/55 (5%)

Query: 72  HLSGCVQALVGAIQPLQ-LQQHKPSNLPGLIQGAQHRLK--PEIRVTVTGLHSNL 123
            +SG + ALVG +  L+ L+ HK  NL G IQ A  +LK    +R++ T L  ++
Sbjct: 81  QVSGQIPALVGDLPYLETLEFHKQPNLTGPIQPAIAKLKGLKSLRLSWTNLSGSV 135



>gi|17433762|sp|Q56128|RCSC_SALTI   Sensor protein rcsC (Capsular synthesis regulator component C)
          Length = 948

 Score = 28.5 bits (62), Expect = 2.8
 Identities = 14/39 (35%), Positives = 24/39 (61%), Gaps = 1/39 (2%)

Query: 61  GVKFSEAAVPVHLSGCVQALVGAIQPLQLQQ-HKPSNLP 98
           GV +  A  PV+L+  +QAL+G  Q ++++    P +LP
Sbjct: 203 GVGYFYALTPVYLANRLQALLGVEQSIRMENFFTPGSLP 241



>gi|20139412|sp|P58662|RCSC_SALTY   Sensor protein rcsC (Capsular synthesis regulator component C)
          Length = 948

 Score = 28.5 bits (62), Expect = 2.8
 Identities = 14/39 (35%), Positives = 24/39 (61%), Gaps = 1/39 (2%)

Query: 61  GVKFSEAAVPVHLSGCVQALVGAIQPLQLQQ-HKPSNLP 98
           GV +  A  PV+L+  +QAL+G  Q ++++    P +LP
Sbjct: 203 GVGYFYALTPVYLANRLQALLGVEQSIRMENFFTPGSLP 241



>gi|2495017|sp|Q98907|P2Y3_CHICK   P2Y purinoceptor 3 (P2Y3) (Nucleoside diphosphate receptor)
          Length = 328

 Score = 27.7 bits (60), Expect = 4.3
 Identities = 13/39 (33%), Positives = 19/39 (48%), Gaps = 3/39 (7%)

Query: 2   YYDALGRVLYENCSYIQNYIS---STRYWHKKSRGRLTW 37
           Y +  G +L+  C  +Q Y+        WHKK   +LTW
Sbjct: 102 YTNLHGSILFLTCISVQRYMGICHPLASWHKKKGKKLTW 140



>gi|10720180|sp|O93361|P2Y3_MELGA   P2Y purinoceptor 3 (P2Y3) (Nucleoside diphosphate receptor)
          Length = 328

 Score = 27.7 bits (60), Expect = 4.5
 Identities = 13/39 (33%), Positives = 19/39 (48%), Gaps = 3/39 (7%)

Query: 2   YYDALGRVLYENCSYIQNYIS---STRYWHKKSRGRLTW 37
           Y +  G +L+  C  +Q Y+        WHKK   +LTW
Sbjct: 102 YTNLHGSILFLTCISVQRYMGICHPLASWHKKKGKKLTW 140



>gi|549317|sp|P35930|VGNB_RCMV   Genome polyprotein B [Contains: Protease cofactor; Membrane binding
            protein; VPG; Protease ; RNA polymerase ]
          Length = 1864

 Score = 27.3 bits (59), Expect = 5.3
 Identities = 17/50 (34%), Positives = 20/50 (40%), Gaps = 12/50 (24%)

Query: 48   CHINSPFPLAVTCGVKFSEAAVPVHLSGCVQALVGAIQPLQLQQHKPSNL 97
            C I S FPL V C   F+E  V  H              L LQ+H   N+
Sbjct: 1489 CGIPSGFPLTVICNSIFNEILVRYHYK------------LLLQEHNAPNM 1526



>gi|13431893|sp|P57859|SYFB_PASMU   Phenylalanyl-tRNA synthetase beta chain (Phenylalanine--tRNA ligase
           beta chain) (PheRS)
          Length = 795

 Score = 26.9 bits (58), Expect = 6.3
 Identities = 19/72 (26%), Positives = 29/72 (40%), Gaps = 4/72 (5%)

Query: 38  PWLLMSQLRTCHINSPFPLAVTCGVKFSEAAVPVHLSGCVQALVGAIQPLQLQQHKPSNL 97
           P  L  +LR C I S  P+         E   P+H     +      QP+Q++  K    
Sbjct: 231 PMWLQEKLRRCGIRSIDPVVDVTNYILLELGQPMHAFDAAK----VAQPVQVRMAKSGEA 286

Query: 98  PGLIQGAQHRLK 109
             L+ G+  +LK
Sbjct: 287 LVLLDGSTAKLK 298



>gi|6225773|sp|O43010|NMT_SCHPO   Probable glycylpeptide N-tetradecanoyltransferase (Peptide
           N-myristoyltransferase) (Myristoyl-CoA:protein
           N-myristoyltransferase) (NMT)
          Length = 466

 Score = 26.9 bits (58), Expect = 6.5
 Identities = 16/47 (34%), Positives = 21/47 (44%), Gaps = 3/47 (6%)

Query: 28  HKKSRGRLTWPWLLMSQLRTCHINSPFPLAVTCGVKFSEAAVPVHLS 74
           HKK R +   P L+    R CH+ + +    T GV       PV LS
Sbjct: 188 HKKLRSKRLTPLLIKEVTRRCHLENVWQAVYTAGVLLPS---PVSLS 231



>gi|17433741|sp|P14376|RCSC_ECOLI   Sensor protein rcsC (Capsular synthesis regulator component C)
          Length = 949

 Score = 26.9 bits (58), Expect = 6.5
 Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 1/39 (2%)

Query: 61  GVKFSEAAVPVHLSGCVQALVGAIQPLQLQQ-HKPSNLP 98
           GV +  A  PV+L+  +QAL+G  Q ++++    P  LP
Sbjct: 203 GVGYFYALTPVYLANRLQALLGVEQTIRMENFFLPGTLP 241



>gi|14194968|sp|Q9UVX3|NMT_ASPFU   Glycylpeptide N-tetradecanoyltransferase (Peptide
           N-myristoyltransferase) (Myristoyl-CoA:protein
           N-myristoyltransferase) (NMT)
          Length = 492

 Score = 26.9 bits (58), Expect = 6.8
 Identities = 15/49 (30%), Positives = 22/49 (44%), Gaps = 5/49 (10%)

Query: 28  HKKSRGRLTWPWLLMSQLRTCHINSPFPLAVTCGVKFSEAAVPVHLSGC 76
           HKK R +   P L+    R C++N  +    T GV      +P  +S C
Sbjct: 218 HKKLRSKRLTPVLIKEITRRCYLNGIYQAIYTAGV-----VLPTPVSSC 261



>gi|120785|sp|P21548|GAC2_CHICK   Gamma-aminobutyric-acid receptor gamma-2 subunit precursor (GABA(A)
           receptor)
          Length = 474

 Score = 26.6 bits (57), Expect = 9.5
 Identities = 10/27 (37%), Positives = 20/27 (74%)

Query: 97  LPGLIQGAQHRLKPEIRVTVTGLHSNL 123
           L GL++G  ++L+P+I V  T +H+++
Sbjct: 69  LNGLLEGYDNKLRPDIGVKPTVIHTDM 95






  Database: Non-redundant SwissProt sequences
    Posted date:  Mar 9, 2004  2:01 PM
  Number of letters in database: 53,526,777
  Number of sequences in database:  145,815
  
Lambda     K      H
   0.323    0.136    0.442 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,586,500
Number of Sequences: 145815
Number of extensions: 94340
Number of successful extensions: 179
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 178
Number of HSP's gapped (non-prelim): 5
length of query: 125
length of database: 53,526,777
effective HSP length: 101
effective length of query: 24
effective length of database: 38,799,462
effective search space: 931187088
effective search space used: 931187088
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 57 (26.6 bits)