Get   for     ? 
 Site search     ? 
SEQUENCE ANALYSIS
 
  Help
  General Help
  Formats
  Gaps
  Matrix
  References
  Wise2 Help
 
 
 Wise2   Results




genewise output
Score -166.35 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

392_AA             1 MNLAEICDNAKKGREYALLGNYDSSMVYYQGVMQQIQRHCQSVRDPAIK 
                     +  AE C   + G     + +Y  +       ++ +  H   +    I  
                     Q--AEQCQKQQAG----VIWDYQKTE---RAGLENVYLHSSLIPGAPIL 
hg16_dna_261662 8936 c  ggctcaccgg    gatgtcaag   aggcgagtccatcacggcac 
                     a  caagaaaacg    ttgaaaaca   gcgtaatatagcttcgcctt 
                     a  aggcaggaat    gtgtcgaaa   gaagaccccctcacaaccct 


392_AA            50 GKWQQVRQELLEEY                          QVKSIVSTL 
                        QQ R+E                               +   ++ST  
                     DPSQQARREYTCST          E:W[tgg]        REDCVMSTC 
hg16_dna_261662 9056 gcaccgcagtattaTGTGGTTT  Intron 1   CAGGGcggtgatat 
                     acgaacggaacgcc <1-----[9099 :10423]-1>  gaagttccg 
                     tccagtcggcccga                          aaccggcac 


392_AA            74 ESFKIDKPPDFPVSCQDEPFRDPAVWPPPVPAEHRDDIADLEEAKK    
                      +  ++K   F    ++               E    +   E  KK    
                     CNVGFEKSVKFKEKGRENLGNGSTT---DNNTEVGRSMRAAEWGKK    
hg16_dna_26166210453 taggtgatgatagagagacgagaaa   gaaagggaaacgggtgaa    
                     gatgtaactataaaggaatgaggcc   aaacatgggtgccaggaa    
                     tccctaaaaataggaagcgatgtca   tccaaaaacgtaaaggag    


392_AA           120                        -LLREAVVLPMWMPDFFKGIRRPWKG 
                                                   ++P+       GI   +   
                                            KAQNREDIIPVG-----RGI