BLASTP 2.2.8 [Jan-05-2004]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

RID: 1078929902-23145-155478776769.BLASTQ3

Query= hg16_dna_3|geneid_v1.1_predicted_protein_3|85_AA
         (84 letters)


Database: Non-redundant SwissProt sequences 
           145,815 sequences; 53,526,777 total letters

 
If you have any problems or questions with the results of this search 
please refer to the BLAST FAQs

Taxonomy reports

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|6166537|sp|P98164|LRP2_HUMAN  Low-density lipoprotein rec...    30   1.00  
gi|125713|sp|P00526|SRC_RSVP  Tyrosine-protein kinase transf...    28   3.3   
gi|20137389|sp|Q923W9|AD33_MOUSE  ADAM 33 precursor (A disin...    27   9.7   

Alignments


>gi|6166537|sp|P98164|LRP2_HUMAN   Low-density lipoprotein receptor-related protein 2 precursor
            (Megalin) (Glycoprotein 330) (gp330)
          Length = 4655

 Score = 30.0 bits (66), Expect = 1.00
 Identities = 13/52 (25%), Positives = 25/52 (48%), Gaps = 1/52 (1%)

Query: 26   LLNKRPQDKSAGEHPLIFENSAQHHLSGEASSDPPPTSIPRRSYPPASTDPS 77
            L  ++ +  +  E+P I+           A++ PP  S+P +  PP+  DP+
Sbjct: 4582 LFKRKSKQTTNFENP-IYAQMENEQKESVAATPPPSPSLPAKPKPPSRRDPT 4632



>gi|125713|sp|P00526|SRC_RSVP   Tyrosine-protein kinase transforming protein SRC (p60-SRC)
          Length = 526

 Score = 28.1 bits (61), Expect = 3.3
 Identities = 20/59 (33%), Positives = 27/59 (45%), Gaps = 7/59 (11%)

Query: 30 RPQDKSAGEHPLIFENSAQHHLSGEASSDPPPTSIP------RRSYPPASTDPSLFQAF 82
          +P+D S   H L   +S  HH    AS  P  T+ P       RS+   +T+P LF  F
Sbjct: 7  KPKDPSQRRHSLEPPDST-HHGGFPASQTPDETAAPDAHRNPSRSFGTVATEPKLFWGF 64



>gi|20137389|sp|Q923W9|AD33_MOUSE   ADAM 33 precursor (A disintegrin and metalloproteinase domain 33)
          Length = 797

 Score = 26.6 bits (57), Expect = 9.7
 Identities = 11/22 (50%), Positives = 16/22 (72%)

Query: 51  LSGEASSDPPPTSIPRRSYPPA 72
           ++GE S  PP TS  +RS+PP+
Sbjct: 763 ITGEPSPPPPWTSCQQRSHPPS 784






  Database: Non-redundant SwissProt sequences
    Posted date:  Mar 9, 2004  2:01 PM
  Number of letters in database: 53,526,777
  Number of sequences in database:  145,815
  
Lambda     K      H
   0.314    0.129    0.389 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,512,374
Number of Sequences: 145815
Number of extensions: 91060
Number of successful extensions: 291
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 254
Number of HSP's gapped (non-prelim): 37
length of query: 84
length of database: 53,526,777
effective HSP length: 60
effective length of query: 24
effective length of database: 44,777,877
effective search space: 1074669048
effective search space used: 1074669048
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 58 (26.9 bits)