SW % % % name query position in query (bp left) name matching type of repeat pos. in repeat (bp left) ID score div del ins sequence begin end (over) repeat class/family begin end (unaligned) 296 27.8 6.1 1.0 hg16_dna 327 424 (499576) + MIR3 SINE/MIR 85 187 (21) 1 190 28.2 2.5 3.7 hg16_dna 539 619 (499381) + L2 LINE/L2 2970 3049 (223) 2 247 27.8 5.5 1.1 hg16_dna 785 875 (499125) + LTR48B LTR/ERV1 6 100 (544) 3 * 1206 24.0 8.2 6.4 hg16_dna 850 1043 (498957) + MER39 LTR/ERV1 260 449 (258) 4 2118 13.8 0.0 0.0 hg16_dna 1044 1334 (498666) + AluSx SINE/Alu 11 301 (11) 5 1206 24.0 8.2 6.4 hg16_dna 1335 1579 (498421) + MER39 LTR/ERV1 449 707 (0) 4 475 21.7 0.0 2.2 hg16_dna 3723 3906 (496094) + CT-rich Low_complexity 1 180 (0) 6 185 0.0 4.0 0.0 hg16_dna 4695 4719 (495281) + (TTG)n Simple_repeat 2 27 (0) 7 1677 16.6 1.0 2.4 hg16_dna 4727 5017 (494983) C AluJb SINE/Alu (25) 287 1 8 581 28.2 5.8 4.5 hg16_dna 5037 5201 (494799) C MIR SINE/MIR (26) 236 66 9 2271 12.2 10.6 3.0 hg16_dna 5202 5243 (494757) C MSTA LTR/MaLR (0) 428 391 10 2256 12.5 0.0 0.0 hg16_dna 5244 5548 (494452) + AluSg SINE/Alu 1 305 (5) 11 2271 12.2 10.6 3.0 hg16_dna 5549 5903 (494097) C MSTA LTR/MaLR (37) 391 1 10 581 28.2 5.8 4.5 hg16_dna 5904 5960 (494040) C MIR SINE/MIR (196) 66 11 9 1830 13.0 0.3 5.3 hg16_dna 7407 7707 (492293) + AluSq SINE/Alu 21 306 (7) 12 746 33.3 7.2 8.4 hg16_dna 7880 8614 (491386) + L3 LINE/CR1 831 1556 (21) 13 205 39.3 4.4 0.9 hg16_dna 9210 9322 (490678) + L2 LINE/L2 3141 3257 (15) 14 294 31.8 3.6 0.0 hg16_dna 9527 9636 (490364) C L2 LINE/L2 (0) 3272 3159 15 2229 9.7 0.0 1.0 hg16_dna 9760 10051 (489949) C AluSq SINE/Alu (24) 289 1 16 2356 11.6 0.0 0.3 hg16_dna 10238 10548 (489452) + AluSx SINE/Alu 1 310 (2) 17 229 28.9 0.0 2.6 hg16_dna 10874 10951 (489049) + GA-rich Low_complexity 3 78 (0) 18 5320 8.0 1.8 0.0 hg16_dna 13905 14583 (485417) C LTR8 LTR/ERV1 (0) 691 1 19 1999 11.1 4.2 0.0 hg16_dna 15762 16049 (483951) + AluY SINE/Alu 1 300 (11) 20 310 22.1 23.2 0.0 hg16_dna 16171 16265 (483735) + MER5B DNA/MER1_type 5 121 (57) 21 756 21.0 6.1 14.2 hg16_dna 16293 16603 (483397) C L1MC4 LINE/L1 (6) 8036 7751 22 240 15.9 6.8 0.0 hg16_dna 16620 16663 (483337) C MER5B DNA/MER1_type (125) 53 7 23 2118 9.6 5.1 0.3 hg16_dna 16971 17264 (482736) + AluY SINE/Alu 1 308 (3) 24 1293 18.5 4.1 2.4 hg16_dna 17410 17702 (482298) + MER33 DNA/MER1_type 27 324 (0) 25 2897 19.0 8.3 5.5 hg16_dna 18297 19003 (480997) + LTR8A LTR/ERV1 1 727 (0) 26 1988 15.2 6.2 0.3 hg16_dna 21010 21345 (478655) + MLT2C1 LTR/ERVL 1 356 (41) 27 21 0.0 0.0 0.0 hg16_dna 21421 21441 (478559) + AT_rich Low_complexity 1 21 (0) 28 4371 25.8 4.4 1.8 hg16_dna 21455 22915 (477085) + L1M2 LINE/L1 2794 4291 (2557) 29 734 18.6 1.4 0.7 hg16_dna 22916 23056 (476944) C L1M4 LINE/L1 (1893) 4253 4112 30 4459 16.9 1.8 5.0 hg16_dna 23837 24005 (475995) C L1MC2 LINE/L1 (1) 6623 6450 31 1945 13.2 4.9 0.0 hg16_dna 24006 24293 (475707) + AluSc SINE/Alu 1 302 (7) 32 4459 16.9 1.8 5.0 hg16_dna 24294 25019 (474981) C L1MC2 LINE/L1 (174) 6450 5757 31 1511 15.6 1.6 0.0 hg16_dna 25031 25286 (474714) C L1MA7 LINE/L1 (0) 6291 6032 33 1460 16.8 5.8 0.0 hg16_dna 25287 25651 (474349) C L1MC2 LINE/L1 (2511) 5764 5379 31 907 21.7 6.2 0.8 hg16_dna 25675 25916 (474084) C L1MC2 LINE/L1 (4109) 2317 2063 31 2036 14.2 29.5 0.4 hg16_dna 25938 26411 (473589) C L1MC2 LINE/L1 (4507) 1919 1308 31 810 26.4 14.0 9.8 hg16_dna 26412 26764 (473236) + MER34B LTR/ERV1 1 386 (179) 34 3999 13.0 5.4 7.0 hg16_dna 26765 27380 (472620) + LTR8 LTR/ERV1 1 606 (85) 35 2654 3.7 0.0 0.0 hg16_dna 27381 27678 (472322) C AluY SINE/Alu (13) 298 1 36 3999 13.0 5.4 7.0 hg16_dna 27679 27763 (472237) + LTR8 LTR/ERV1 606 691 (0) 35 810 26.4 14.0 9.8 hg16_dna 27764 27951 (472049) + MER34B LTR/ERV1 386 565 (0) 34 336 25.5 13.2 1.2 hg16_dna 27960 28126 (471874) + MIR SINE/MIR 48 234 (28) 37 2161 12.1 0.0 0.3 hg16_dna 28891 29181 (470819) + AluY SINE/Alu 1 290 (21) 38 1409 21.6 3.4 3.3 hg16_dna 29235 29801 (470199) + L1ME1 LINE/L1 5617 6178 (173) 39 452 31.1 4.5 8.2 hg16_dna 29895 30003 (469997) + L1ME LINE/L1 5384 5496 (625) 40 2441 10.1 0.0 0.0 hg16_dna 30004 30310 (469690) + AluSx SINE/Alu 2 308 (4) 41 452 31.1 4.5 8.2 hg16_dna 30311 30627 (469373) + L1ME LINE/L1 5496 5794 (327) 40 248 28.6 0.0 1.4 hg16_dna 31387 31457 (468543) + (TG)n Simple_repeat 2 71 (0) 42 22 0.0 0.0 0.0 hg16_dna 31747 31768 (468232) + AT_rich Low_complexity 1 22 (0) 43 2006 23.3 6.3 4.7 hg16_dna 31773 32483 (467517) + L1MB8 LINE/L1 5458 6178 (0) 44 625 27.6 0.0 8.9 hg16_dna 32477 32734 (467266) + L1ME3B LINE/L1 5732 5966 (274) 45 * 288 0.0 0.0 0.0 hg16_dna 32738 32769 (467231) + (TA)n Simple_repeat 2 33 (0) 46 31 0.0 0.0 0.0 hg16_dna 32940 32970 (467030) + AT_rich Low_complexity 1 31 (0) 47 503 26.1 13.7 0.0 hg16_dna 32974 33134 (466866) C MIR SINE/MIR (26) 236 54 48 2027 13.1 0.0 3.8 hg16_dna 33593 33909 (466091) C AluSx SINE/Alu (7) 305 1 49 339 20.9 11.8 2.1 hg16_dna 35950 36042 (463958) C MER5B DNA/MER1_type (31) 147 46 50 6523 13.5 2.5 1.0 hg16_dna 36048 37282 (462718) C L1MA5A LINE/L1 (0) 6939 5690 51 1231 18.9 7.0 0.0 hg16_dna 37271 37583 (462417) C L1MA5A LINE/L1 (2885) 3903 3569 51 * 21 7.1 0.0 0.0 hg16_dna 37586 37627 (462373) + AT_rich Low_complexity 1 42 (0) 52 305 21.9 0.0 0.2 hg16_dna 37637 37720 (462280) C L1ME1 LINE/L1 (1) 6177 6092 53 8140 17.0 3.8 1.8 hg16_dna 37931 38568 (461432) C L1PA16 LINE/L1 (0) 6166 5543 54 279 0.0 0.0 0.0 hg16_dna 38569 38599 (461401) + (TTTTG)n Simple_repeat 2 32 (0) 55 8140 17.0 3.8 1.8 hg16_dna 38600 40475 (459525) C L1PA16 LINE/L1 (623) 5543 3611 54 1255 24.0 1.3 0.0 hg16_dna 40485 40792 (459208) C L1MA5A LINE/L1 (3227) 3561 3250 51 2192 10.9 1.6 0.3 hg16_dna 40803 41107 (458893) C AluSx SINE/Alu (3) 309 1 56 7686 21.0 1.5 3.4 hg16_dna 41108 43172 (456828) C L1MA5A LINE/L1 (3958) 2831 807 51 5759 22.5 3.4 2.8 hg16_dna 43172 44516 (455484) C L1M2c LINE/L1 (5424) 1365 14 57 * 2448 9.2 0.3 0.0 hg16_dna 44583 44887 (455113) + AluSp SINE/Alu 1 306 (7) 58 226 18.9 3.8 0.0 hg16_dna 44932 44984 (455016) C MLT1J LTR/MaLR (35) 476 422 59 230 19.3 10.0 7.8 hg16_dna 45169 45258 (454742) C MLT1J LTR/MaLR (341) 170 79 59 573 23.8 2.3 0.8 hg16_dna 45331 45461 (454539) + MER5B DNA/MER1_type 1 133 (45) 60 225 26.8 3.6 0.0 hg16_dna 45871 45926 (454074) + MIR SINE/MIR 104 161 (101) 61 * 266 26.9 0.0 0.0 hg16_dna 45916 45982 (454018) C MIR SINE/MIR (0) 262 196 62 203 13.6 2.2 2.2 hg16_dna 45983 46027 (453973) + (TA)n Simple_repeat 1 45 (0) 63 713 28.5 2.6 3.6 hg16_dna 46028 46200 (453800) C MIR SINE/MIR (57) 205 33 62 2576 13.3 3.4 1.2 hg16_dna 46201 46617 (453383) + MSTA LTR/MaLR 3 428 (0) 64 713 28.5 2.6 3.6 hg16_dna 46618 46636 (453364) C MIR SINE/MIR (229) 33 15 62 1021 8.5 0.0 6.6 hg16_dna 46765 46915 (453085) + AluSq/x SINE/Alu 1 141 (172) 65 1012 14.9 5.4 0.0 hg16_dna 46972 47139 (452861) C MSTA LTR/MaLR (0) 428 252 66 1050 10.6 0.0 0.7 hg16_dna 47150 47301 (452699) + AluSg/x SINE/Alu 152 302 (8) 67 182 8.3 5.6 0.0 hg16_dna 47421 47456 (452544) + (TCTCTG)n Simple_repeat 5 42 (0) 68 376 23.8 1.2 0.0 hg16_dna 49518 49597 (450403) + MER5B DNA/MER1_type 95 175 (3) 69 306 28.4 8.1 3.7 hg16_dna 49672 49832 (450168) C MER5B DNA/MER1_type (0) 178 11 70 573 26.4 0.0 0.0 hg16_dna 49859 49987 (450013) C MER5A1 DNA/MER1_type (29) 131 3 71 321 30.7 7.1 3.0 hg16_dna 50217 50384 (449616) C MER5B DNA/MER1_type (3) 175 1 72 809 16.5 0.0 0.8 hg16_dna 50903 51059 (448941) + FLAM_C SINE/Alu 1 156 (0) 73 1210 18.6 0.6 12.8 hg16_dna 51450 51794 (448206) C AluJo SINE/Alu (7) 305 3 74 262 33.5 13.3 3.8 hg16_dna 51846 52056 (447944) C MIR SINE/MIR (12) 250 20 75 2668 14.5 3.1 0.5 hg16_dna 52208 52624 (447376) + MSTA LTR/MaLR 1 428 (0) 76 688 12.1 10.7 0.4 hg16_dna 52937 53071 (446929) C L1MD3 LINE/L1 (1) 7994 7675 77 2212 8.8 0.0 1.0 hg16_dna 53073 53370 (446630) C AluSx SINE/Alu (17) 295 1 78 181 33.0 14.7 2.8 hg16_dna 53482 53590 (446410) + MIR SINE/MIR 109 230 (32) 79 1489 21.3 0.0 0.7 hg16_dna 54930 55213 (444787) + AluJo SINE/Alu 3 284 (28) 80 217 7.5 5.0 0.0 hg16_dna 55214 55253 (444747) + (TA)n Simple_repeat 2 43 (0) 81 336 10.9 0.0 0.0 hg16_dna 55254 55299 (444701) + MSTC LTR/MaLR 379 424 (4) 82 368 16.0 2.0 2.0 hg16_dna 55329 55430 (444570) + (TA)n Simple_repeat 1 102 (0) 83 306 0.0 0.0 0.0 hg16_dna 55432 55465 (444535) + (TG)n Simple_repeat 2 35 (0) 84 291 7.9 0.0 0.0 hg16_dna 55467 55504 (444496) C Alu SINE/Alu (13) 289 252 85 843 17.9 0.0 0.0 hg16_dna 55628 55772 (444228) + FRAM SINE/Alu 1 142 (34) 86 405 0.0 0.0 0.0 hg16_dna 55773 55817 (444183) + (TAA)n Simple_repeat 3 47 (0) 87 211 29.5 13.8 8.9 hg16_dna 55828 55920 (444080) C MIR SINE/MIR (15) 247 145 88 2381 14.7 3.5 4.0 hg16_dna 55921 56346 (443654) C MSTC LTR/MaLR (4) 424 1 89 211 29.5 13.8 8.9 hg16_dna 56347 56375 (443625) C MIR SINE/MIR (117) 145 119 88 1684 16.0 4.3 1.1 hg16_dna 56873 57206 (442794) + L1MB3 LINE/L1 5817 6166 (17) 90 2134 10.9 0.7 0.0 hg16_dna 57218 57520 (442480) C AluSg SINE/Alu (5) 305 1 91 25 5.1 0.0 0.0 hg16_dna 57611 57649 (442351) + AT_rich Low_complexity 1 39 (0) 92 429 30.3 10.1 2.6 hg16_dna 57673 58018 (441982) C L1ME4a LINE/L1 (135) 5986 5615 93 531 23.1 0.0 0.0 hg16_dna 58057 58190 (441810) + (TG)n Simple_repeat 1 134 (0) 94 492 30.2 9.8 0.6 hg16_dna 59024 59206 (440794) C L2 LINE/L2 (5) 3308 3109 95 319 30.5 6.0 11.8 hg16_dna 59521 59884 (440116) C L2 LINE/L2 (1460) 1854 1512 95 1457 24.6 8.6 4.5 hg16_dna 59888 60482 (439518) C L1MC5 LINE/L1 (36) 7925 7307 96 195 4.2 0.0 0.0 hg16_dna 60498 60521 (439479) + (GTTTG)n Simple_repeat 5 28 (0) 97 1765 19.8 13.2 3.5 hg16_dna 60754 61177 (438823) + MLT1C LTR/MaLR 1 465 (2) 98 1390 28.7 9.4 6.7 hg16_dna 61181 62085 (437915) C L1MC5 LINE/L1 (808) 7153 6189 96 1912 12.7 0.0 5.2 hg16_dna 62086 62409 (437591) + AluSx SINE/Alu 1 307 (5) 99 1390 28.7 9.4 6.7 hg16_dna 62410 63215 (436785) C L1MC5 LINE/L1 (1772) 6189 5406 96 338 27.3 1.7 8.3 hg16_dna 63298 63417 (436583) + L2 LINE/L2 3139 3250 (22) 100 240 11.1 0.0 0.0 hg16_dna 63432 63467 (436533) + (TGAA)n Simple_repeat 1 36 (0) 101 761 34.3 9.4 1.9 hg16_dna 64207 64855 (435145) + L1ME3B LINE/L1 5143 5847 (393) 102 3170 21.7 1.4 0.9 hg16_dna 64856 65505 (434495) + MER82 DNA/MER2_type 1 653 (0) 103 761 34.3 9.4 1.9 hg16_dna 65506 65570 (434430) + L1ME3B LINE/L1 5847 5906 (334) 102 753 31.4 15.6 4.2 hg16_dna 66157 66751 (433249) C L3 LINE/CR1 (517) 1060 398 104 662 28.3 17.3 2.0 hg16_dna 67707 67943 (432057) C MLT1K LTR/MaLR (79) 512 313 105 741 14.9 6.0 9.5 hg16_dna 67944 68143 (431857) + MER53 DNA 1 193 (0) 106 662 28.3 17.3 2.0 hg16_dna 68144 68349 (431651) C MLT1K LTR/MaLR (278) 313 1 105 208 36.1 1.4 0.0 hg16_dna 68473 68544 (431456) + L2 LINE/L2 3151 3223 (49) 107 246 38.2 1.5 1.5 hg16_dna 68788 68920 (431080) C MIR SINE/MIR (80) 182 50 108 245 32.6 13.3 0.0 hg16_dna 69313 69410 (430590) + MER91B DNA/Tip100 44 154 (36) 109 279 23.8 4.6 3.5 hg16_dna 69463 69549 (430451) C MIR SINE/MIR (111) 97 10 110 2169 24.1 5.4 0.2 hg16_dna 70325 70806 (429194) + MLT2B3 LTR/ERVL 2 508 (46) 111 292 17.4 0.0 17.9 hg16_dna 70821 70904 (429096) + Tigger2 DNA/MER2_type 1 69 (2649) 112 * 2886 13.6 2.3 0.5 hg16_dna 70895 71330 (428670) + Tigger2 DNA/MER2_type 2273 2716 (2) 112 1913 16.3 6.0 0.3 hg16_dna 71375 71743 (428257) C MLT1B LTR/MaLR (0) 390 1 113 405 32.3 3.5 3.5 hg16_dna 72701 72870 (427130) + MIR3 SINE/MIR 3 172 (36) 114 1890 12.9 0.0 0.0 hg16_dna 73298 73643 (426357) C AluSx SINE/Alu (0) 347 2 115 216 0.0 0.0 0.0 hg16_dna 74520 74543 (425457) + (TC)n Simple_repeat 2 25 (0) 116 261 0.0 0.0 0.0 hg16_dna 74544 74572 (425428) + (CA)n Simple_repeat 2 30 (0) 117 21 5.7 0.0 0.0 hg16_dna 74876 74910 (425090) + AT_rich Low_complexity 1 35 (0) 118 1802 21.1 9.3 0.2 hg16_dna 76910 77326 (422674) + MER31A LTR/ERV1 1 455 (30) 119 2055 9.1 1.4 0.3 hg16_dna 77995 78280 (421720) + AluSx SINE/Alu 1 289 (23) 120 931 17.6 0.0 2.6 hg16_dna 78281 78549 (421451) + GA-rich Low_complexity 1 262 (0) 121 401 31.6 4.4 3.8 hg16_dna 79033 79190 (420810) C MIR SINE/MIR (15) 247 89 122 198 20.0 4.4 0.0 hg16_dna 79189 79233 (420767) + MIR SINE/MIR 50 96 (166) 123 * 935 7.9 0.0 3.8 hg16_dna 79826 79957 (420043) C L1PA8 LINE/L1 (0) 6172 6046 124 224 31.6 5.1 3.1 hg16_dna 80347 80444 (419556) + MIR SINE/MIR 2 101 (161) 125 728 26.1 5.8 0.8 hg16_dna 80647 80905 (419095) C LTR33 LTR/ERVL (235) 286 15 126 3093 16.6 1.1 2.2 hg16_dna 80952 81306 (418694) + MER34B LTR/ERV1 1 349 (216) 127 1997 9.2 5.0 0.3 hg16_dna 81307 81588 (418412) + AluSg SINE/Alu 1 295 (15) 128 3093 16.6 1.1 2.2 hg16_dna 81589 81774 (418226) + MER34B LTR/ERV1 349 536 (29) 127 267 35.3 20.8 1.3 hg16_dna 82079 82391 (417609) C L2 LINE/L2 (373) 2941 2568 129 523 26.6 0.6 5.5 hg16_dna 82393 82555 (417445) C L2 LINE/L2 (0) 3313 3159 130 245 25.8 6.5 0.0 hg16_dna 83116 83177 (416823) C L2 LINE/L2 (5) 3308 3243 131 2004 11.7 0.0 0.0 hg16_dna 83601 83912 (416088) + AluSx SINE/Alu 1 312 (0) 132 2683 9.6 3.0 0.6 hg16_dna 84803 85168 (414832) C THE1C LTR/MaLR (0) 375 1 133 2524 1.7 0.3 0.0 hg16_dna 85175 85464 (414536) + L1PA2 LINE/L1 5861 6151 (4) 134 191 6.1 0.0 2.9 hg16_dna 85476 85509 (414491) + (TAAAAA)n Simple_repeat 2 34 (0) 135 1352 16.3 0.4 1.3 hg16_dna 86004 86233 (413767) + MLT1A1 LTR/MaLR 181 408 (0) 136 427 34.1 1.7 0.0 hg16_dna 86552 86767 (413233) + (TG)n Simple_repeat 1 219 (0) 137 747 27.6 11.2 5.1 hg16_dna 87388 87796 (412204) + LTR33 LTR/ERVL 35 468 (53) 138 284 27.3 17.8 2.0 hg16_dna 87849 87949 (412051) + L2 LINE/L2 3192 3308 (5) 139 222 30.6 6.2 5.5 hg16_dna 88679 88806 (411194) + MIR3 SINE/MIR 78 206 (2) 140 1891 12.7 0.0 3.4 hg16_dna 90176 90628 (409372) + AluSq SINE/Alu 1 443 (0) 141 206 35.2 4.7 1.9 hg16_dna 90631 90737 (409263) + L2 LINE/L2 3159 3268 (4) 142 632 12.6 12.6 0.0 hg16_dna 91326 91452 (408548) + MER53 DNA 29 171 (22) 143 195 4.2 0.0 0.0 hg16_dna 91969 91992 (408008) + (TG)n Simple_repeat 1 24 (0) 144 488 28.6 5.0 2.5 hg16_dna 94053 94253 (405747) + MIR SINE/MIR 9 214 (48) 145 418 26.3 12.1 4.7 hg16_dna 94775 95103 (404897) + L2 LINE/L2 2737 3088 (225) 146 2282 10.2 1.0 0.0 hg16_dna 95650 95944 (404056) + AluSx SINE/Alu 1 298 (14) 147 3273 16.6 10.8 2.2 hg16_dna 96235 96900 (403100) + LTR8A LTR/ERV1 1 723 (4) 148 235 27.2 1.1 3.2 hg16_dna 96933 97027 (402973) + L2 LINE/L2 3160 3252 (61) 146 1043 25.5 5.1 1.9 hg16_dna 97382 97693 (402307) + MLT1F2 LTR/MaLR 1 322 (240) 149 1254 20.9 2.4 0.0 hg16_dna 97839 98087 (401913) + MLT1F2 LTR/MaLR 308 562 (0) 149 181 30.3 27.3 0.9 hg16_dna 98114 98223 (401777) C MIR SINE/MIR (118) 144 6 150 499 25.8 5.4 1.8 hg16_dna 100285 100450 (399550) + MIR SINE/MIR 77 248 (14) 151 424 27.1 14.0 2.5 hg16_dna 101313 101547 (398453) C MIR SINE/MIR (0) 262 1 152 374 38.3 2.6 6.6 hg16_dna 102670 102774 (397226) C L2 LINE/L2 (0) 3272 3164 153 2046 13.1 1.3 1.0 hg16_dna 102775 103083 (396917) + AluSx SINE/Alu 1 310 (2) 154 374 38.3 2.6 6.6 hg16_dna 103084 103433 (396567) C L2 LINE/L2 (108) 3164 2835 153 208 37.7 5.0 0.0 hg16_dna 103513 103732 (396268) C L2 LINE/L2 (910) 2404 2174 153 356 31.6 4.6 1.3 hg16_dna 104073 104223 (395777) C L2 LINE/L2 (17) 3255 3100 155 1885 20.1 4.2 3.3 hg16_dna 104315 104772 (395228) C MLT1C LTR/MaLR (0) 467 6 156 254 26.7 0.0 0.0 hg16_dna 104789 104848 (395152) + L2 LINE/L2 3246 3305 (8) 157 340 30.2 14.1 9.4 hg16_dna 105180 105247 (394753) + L1MC4a LINE/L1 5549 5612 (2196) 158 1635 14.3 0.4 1.6 hg16_dna 105248 105496 (394504) + AluSx SINE/Alu 58 303 (9) 159 340 30.2 14.1 9.4 hg16_dna 105497 105661 (394339) + L1MC4a LINE/L1 5612 5793 (2015) 158 490 28.8 10.4 6.4 hg16_dna 105664 106008 (393992) C MLT1J LTR/MaLR (49) 462 104 160 271 30.8 0.8 4.9 hg16_dna 106039 106161 (393839) + L1MC4a LINE/L1 5799 5916 (1892) 158 2193 18.7 5.4 8.8 hg16_dna 106169 106801 (393199) + LTR36 LTR/ERV1 1 611 (0) 161 396 36.9 0.5 2.6 hg16_dna 106868 107059 (392941) + LTR36-int LTR/ERV1 115 302 (1484) 161 1455 15.0 4.9 5.5 hg16_dna 107609 107915 (392085) + LTR36-int LTR/ERV1 883 1190 (5408) 161 4057 12.9 1.6 1.2 hg16_dna 107916 108557 (391443) C LTR9B LTR/ERV1 (0) 644 1 162 1455 15.0 4.9 5.5 hg16_dna 108558 108620 (391380) + LTR36-int LTR/ERV1 1190 2479 (4119) 161 265 21.6 0.0 0.0 hg16_dna 108621 108671 (391329) + LTR30 LTR/ERV1 1 51 (671) 163 1768 10.6 2.2 3.0 hg16_dna 108672 109007 (390993) + LTR12 LTR/ERV1 57 1160 (418) 164 307 28.6 0.9 0.0 hg16_dna 109009 109113 (390887) + LTR30 LTR/ERV1 553 658 (64) 163 543 10.8 0.0 0.0 hg16_dna 109114 109187 (390813) + LTR12 LTR/ERV1 641 714 (0) 165 1844 15.2 3.4 2.7 hg16_dna 109196 109477 (390523) + LTR36-int LTR/ERV1 1260 1538 (5138) 166 2411 6.5 0.0 0.7 hg16_dna 109478 109772 (390228) + AluY SINE/Alu 17 309 (2) 167 1844 15.2 3.4 2.7 hg16_dna 109773 109982 (390018) + LTR36-int LTR/ERV1 1538 3752 (2924) 166 662 11.7 0.0 0.0 hg16_dna 109974 110067 (389933) + LTR36-int LTR/ERV1 3975 4068 (2530) 166 * 3350 18.0 3.3 2.0 hg16_dna 110056 110695 (389305) + LTR36-int LTR/ERV1 1631 2278 (2602) 166 12677 16.5 4.3 6.4 hg16_dna 110743 113563 (386437) + LTR36-int LTR/ERV1 2758 7466 (514) 166 881 19.1 8.1 5.8 hg16_dna 113593 113815 (386185) + LTR36-int LTR/ERV1 5923 6150 (181) 166 437 17.1 0.1 0.0 hg16_dna 113831 113904 (386096) + MER49 LTR/ERV1 488 752 (165) 168 356 32.9 7.5 8.6 hg16_dna 113979 114327 (385673) + LTR36-int LTR/ERV1 6705 7049 (73) 166 2105 17.6 12.1 9.7 hg16_dna 114368 114964 (385036) + LTR36 LTR/ERV1 1 611 (0) 166 260 12.8 0.0 4.9 hg16_dna 115272 115309 (384691) + MER34C LTR/ERV1 1 36 (549) 169 3330 13.9 0.8 0.0 hg16_dna 115310 115818 (384182) C LTR72 LTR/ERV1 (0) 519 7 170 245 27.0 0.0 3.9 hg16_dna 115831 115907 (384093) + MER34 LTR/ERV1 67 140 (402) 169 * 1102 22.1 15.6 5.7 hg16_dna 115881 116303 (383697) + MER39 LTR/ERV1 220 684 (23) 171 2290 10.8 0.0 0.0 hg16_dna 116373 116667 (383333) C AluSg SINE/Alu (15) 295 1 172 1997 15.1 0.7 1.9 hg16_dna 117280 117589 (382411) + AluSx SINE/Alu 1 306 (6) 173 794 23.7 10.4 12.8 hg16_dna 117911 118401 (381599) C MER39 LTR/ERV1 (80) 627 1 174 22 3.5 0.0 0.0 hg16_dna 118438 118466 (381534) + AT_rich Low_complexity 1 29 (0) 175 2110 12.2 0.0 1.3 hg16_dna 118632 118931 (381069) + AluSx SINE/Alu 1 296 (16) 176 234 27.6 0.0 5.4 hg16_dna 118979 119070 (380930) + L2 LINE/L2 3083 3169 (144) 177 630 14.3 0.0 0.0 hg16_dna 119091 119195 (380805) C L1MB4 LINE/L1 (2) 6178 6074 178 446 25.8 0.0 0.0 hg16_dna 119606 119725 (380275) + MER31-int LTR/ERV1 1726 1845 (3278) 179 * 513 22.1 16.2 9.0 hg16_dna 119723 119786 (380214) + MER31-int LTR/ERV1 2035 2093 (4094) 179 2558 4.4 0.0 0.7 hg16_dna 119787 120085 (379915) C AluY SINE/Alu (13) 298 2 180 513 22.1 16.2 9.0 hg16_dna 120086 120422 (379578) + MER31-int LTR/ERV1 2093 2465 (3722) 179 512 19.8 3.2 0.0 hg16_dna 120434 120559 (379441) + MER31-int LTR/ERV1 1724 1853 (6267) 179 * 4623 21.4 10.4 5.8 hg16_dna 120541 123326 (376674) + MER31-int LTR/ERV1 2827 5790 (397) 179 2586 16.5 2.3 4.4 hg16_dna 123330 123849 (376151) + LTR54 LTR/ERV1 1 509 (1) 181 266 26.9 8.3 7.7 hg16_dna 123864 124044 (375956) + L1MC/D LINE/L1 5360 5541 (699) 182 2210 11.1 0.3 0.7 hg16_dna 124103 124400 (375600) + AluSx SINE/Alu 1 297 (15) 183 244 35.4 3.5 4.9 hg16_dna 124433 124658 (375342) + L1MC/D LINE/L1 5564 5786 (2022) 182 605 22.5 12.2 1.1 hg16_dna 124662 124841 (375159) + MER63A DNA/AcHobo 1 200 (10) 184 4004 10.0 10.6 0.2 hg16_dna 125283 125865 (374135) C LTR9B LTR/ERV1 (0) 644 1 185 306 26.1 13.2 9.1 hg16_dna 127136 127354 (372646) + MIR SINE/MIR 14 241 (21) 186 2620 5.6 0.0 0.0 hg16_dna 127805 128107 (371893) + AluY SINE/Alu 1 303 (8) 187 21 0.0 0.0 0.0 hg16_dna 128148 128168 (371832) + AT_rich Low_complexity 1 21 (0) 188 459 24.8 3.4 2.0 hg16_dna 128197 128344 (371656) C MIR SINE/MIR (1) 261 112 189 262 27.1 2.8 5.4 hg16_dna 128638 128849 (371151) + L1PA17 LINE/L1 5334 5544 (698) 190 297 30.2 6.6 0.0 hg16_dna 129205 129310 (370690) C MIR3 SINE/MIR (44) 164 52 191 800 23.9 1.1 0.0 hg16_dna 129510 129693 (370307) + MER5A DNA/MER1_type 1 186 (3) 192 697 22.8 1.2 1.2 hg16_dna 129707 129866 (370134) C MER5A1 DNA/MER1_type (0) 160 1 193 499 20.3 5.3 1.3 hg16_dna 129945 130094 (369906) + MER5A1 DNA/MER1_type 3 158 (2) 194 2017 20.4 5.9 6.5 hg16_dna 130597 130698 (369302) C MLT1D LTR/MaLR (0) 505 404 195 2017 8.2 10.4 0.0 hg16_dna 130699 130967 (369033) + AluSx SINE/Alu 1 297 (15) 196 2017 20.4 5.9 6.5 hg16_dna 130968 131372 (368628) C MLT1D LTR/MaLR (101) 404 1 195 346 32.1 12.9 0.9 hg16_dna 132419 132635 (367365) C MIR SINE/MIR (1) 261 19 197 298 30.2 18.1 0.6 hg16_dna 133829 133988 (366012) + MIR SINE/MIR 54 241 (21) 198 325 15.7 0.0 0.0 hg16_dna 134320 134370 (365630) C LTR67 LTR/ERVL (0) 557 507 199 747 20.6 20.2 2.2 hg16_dna 134446 134673 (365327) C MLT1J1 LTR/MaLR (175) 271 3 200 262 29.5 1.3 0.0 hg16_dna 134737 134814 (365186) C LTR67 LTR/ERVL (476) 81 3 199 337 18.8 2.8 2.8 hg16_dna 134861 134931 (365069) C MLT1F1 LTR/MaLR (131) 436 366 201 440 21.7 5.1 1.7 hg16_dna 135109 135225 (364775) C L2 LINE/L2 (0) 3313 3193 202 2151 11.5 0.7 3.3 hg16_dna 135273 135578 (364422) C AluSx SINE/Alu (14) 298 1 203 835 12.4 2.3 0.0 hg16_dna 136897 137025 (362975) + L1MB3 LINE/L1 5982 6113 (70) 204 2069 11.6 0.0 0.3 hg16_dna 137370 137664 (362336) + AluSx SINE/Alu 1 294 (18) 205 1744 18.4 4.8 6.7 hg16_dna 137818 138159 (361841) + PRIMAX-int LTR/ERV1 2654 2988 (3343) 206 2339 12.8 1.2 0.3 hg16_dna 138160 138495 (361505) + MER1B DNA/MER1_type 1 339 (0) 207 1744 18.4 4.8 6.7 hg16_dna 138496 138571 (361429) + PRIMAX-int LTR/ERV1 2988 3064 (3267) 206 283 18.8 10.1 0.0 hg16_dna 138573 138641 (361359) + PRIMAX-int LTR/ERV1 1339 1414 (3522) 206 * 463 28.7 7.2 2.4 hg16_dna 138583 138832 (361168) + LTR57-int LTR/ERVL 1249 1510 (3833) 208 * 939 26.6 6.4 8.0 hg16_dna 138643 139639 (360361) + PRIMAX-int LTR/ERV1 1913 3183 (1697) 206 672 17.6 4.1 4.6 hg16_dna 139805 140000 (360000) + PRIMAX-int LTR/ERV1 3536 3730 (2868) 206 1912 14.4 0.0 1.3 hg16_dna 140011 140313 (359687) C AluSx SINE/Alu (13) 299 1 209 1260 23.8 8.8 7.8 hg16_dna 140542 141149 (358851) + PRIMAX-int LTR/ERV1 2481 3081 (3517) 206 1549 19.1 0.3 0.3 hg16_dna 141150 141438 (358562) + AluJo SINE/Alu 1 289 (23) 210 1260 23.8 8.8 7.8 hg16_dna 141439 141586 (358414) + PRIMAX-int LTR/ERV1 3081 3226 (3372) 206 2147 7.5 0.4 0.0 hg16_dna 141587 141895 (358105) C AluY SINE/Alu (0) 310 1 211 1260 23.8 8.8 7.8 hg16_dna 141896 142443 (357557) + PRIMAX-int LTR/ERV1 3226 3767 (2831) 206 2811 11.1 2.8 1.4 hg16_dna 142444 142865 (357135) C MSTA LTR/MaLR (0) 428 1 212 1260 23.8 8.8 7.8 hg16_dna 142866 142892 (357108) + PRIMAX-int LTR/ERV1 3767 3792 (2806) 206 2054 8.9 1.7 0.0 hg16_dna 142893 143184 (356816) + AluY SINE/Alu 1 297 (14) 213 1260 23.8 8.8 7.8 hg16_dna 143185 143220 (356780) + PRIMAX-int LTR/ERV1 3792 5592 (1006) 206 315 19.7 0.0 4.7 hg16_dna 143189 143252 (356748) + PRIMAX-int LTR/ERV1 4185 4245 (1111) 206 * 568 21.2 2.7 2.7 hg16_dna 143335 143404 (356596) + PRIMAX-int LTR/ERV1 4256 4325 (611) 206 1479 12.4 0.9 1.3 hg16_dna 143405 143632 (356368) C AluSg/x SINE/Alu (10) 300 74 214 568 21.2 2.7 2.7 hg16_dna 143633 143711 (356289) + PRIMAX-int LTR/ERV1 4324 4405 (531) 206 2059 11.6 1.7 0.0 hg16_dna 143810 144134 (355866) + AluSx SINE/Alu 1 312 (0) 215 325 32.1 5.7 2.6 hg16_dna 144249 144440 (355560) + PRIMAX-int LTR/ERV1 1078 1275 (2827) 206 2884 12.5 1.8 5.1 hg16_dna 145470 145959 (354041) + MER101 LTR/ERV1 1 474 (0) 216 1470 19.1 16.6 4.6 hg16_dna 146591 147001 (352999) + MLT1C LTR/MaLR 8 467 (0) 217 324 29.8 3.2 1.8 hg16_dna 147370 147461 (352539) + MIR SINE/MIR 61 156 (99) 218 1275 23.1 2.9 5.5 hg16_dna 147462 147841 (352159) + MLT1A LTR/MaLR 1 370 (4) 219 324 29.8 3.2 1.8 hg16_dna 147842 147879 (352121) + MIR SINE/MIR 156 192 (63) 218 251 29.7 5.4 0.0 hg16_dna 148619 148729 (351271) + MLT1L LTR/MaLR 468 584 (31) 220 1879 16.1 4.9 5.2 hg16_dna 149005 149149 (350851) C MLT1A0 LTR/MaLR (0) 365 221 221 2962 8.0 0.3 0.0 hg16_dna 149150 149523 (350477) + THE1C LTR/MaLR 1 375 (0) 222 1879 16.1 4.9 5.2 hg16_dna 149524 149743 (350257) C MLT1A0 LTR/MaLR (144) 221 1 221 2219 10.3 0.0 1.3 hg16_dna 149799 150113 (349887) C AluSx SINE/Alu (1) 311 1 223 4188 19.2 5.5 1.8 hg16_dna 150187 151017 (348983) C MER21B LTR/ERV1 (1) 862 1 224 230 36.8 3.4 1.7 hg16_dna 151234 151352 (348648) + MIR SINE/MIR 24 144 (64) 225 244 34.2 5.4 9.3 hg16_dna 151489 151538 (348462) + MIR SINE/MIR 50 100 (162) 226 1946 12.1 2.0 0.7 hg16_dna 151539 151838 (348162) C AluSq SINE/Alu (9) 304 1 227 244 34.2 5.4 9.3 hg16_dna 151839 151916 (348084) + MIR SINE/MIR 100 173 (89) 226 324 27.4 4.3 2.9 hg16_dna 152727 152865 (347135) + MLT1I LTR/MaLR 80 220 (189) 228 197 34.8 4.2 1.7 hg16_dna 153086 153205 (346795) C L2 LINE/L2 (14) 3258 3136 229 2586 3.5 0.0 0.3 hg16_dna 153419 153730 (346270) C AluY SINE/Alu (0) 311 1 230 2209 18.0 4.4 1.8 hg16_dna 153987 154439 (345561) C MLT1C LTR/MaLR (2) 465 1 231 348 31.7 0.9 0.9 hg16_dna 154917 155021 (344979) C L2 LINE/L2 (7) 3265 3161 232 456 21.5 0.0 0.0 hg16_dna 155197 155275 (344725) + L2 LINE/L2 3221 3299 (14) 233 1560 9.8 0.0 0.0 hg16_dna 155280 155493 (344507) + AluSg/x SINE/Alu 89 302 (8) 234 2224 6.4 0.0 0.4 hg16_dna 156139 156462 (343538) + AluY SINE/Alu 1 323 (0) 235 876 31.1 3.9 5.6 hg16_dna 156493 156978 (343022) + L2 LINE/L2 2429 2906 (408) 236 602 31.1 0.0 4.2 hg16_dna 157092 157259 (342741) + L2 LINE/L2 3110 3270 (2) 236 527 32.2 3.4 6.5 hg16_dna 157591 157942 (342058) C MLT1K LTR/MaLR (2) 589 249 237 688 29.2 10.5 2.1 hg16_dna 158317 158641 (341359) C L1MC4a LINE/L1 (1888) 5920 5569 238 245 29.1 0.0 1.2 hg16_dna 158730 158809 (341191) + MER5A DNA/MER1_type 111 189 (0) 239 449 33.8 4.2 0.4 hg16_dna 158868 159108 (340892) C L1MC4a LINE/L1 (726) 5514 5265 238 265 14.6 18.2 0.0 hg16_dna 159281 159335 (340665) + MER5B DNA/MER1_type 114 178 (0) 240 204 32.9 8.8 1.2 hg16_dna 159343 159422 (340578) C L2 LINE/L2 (65) 3207 3122 241 189 25.3 16.2 4.0 hg16_dna 159976 160074 (339926) + L2 LINE/L2 3162 3272 (0) 242 202 22.2 2.1 4.3 hg16_dna 160151 160197 (339803) + MIR SINE/MIR 215 260 (2) 243 1622 18.4 0.0 0.0 hg16_dna 161979 162255 (337745) + AluJo SINE/Alu 1 277 (35) 244 272 28.5 16.3 1.3 hg16_dna 165072 165224 (334776) C MIR SINE/MIR (78) 184 9 245 256 17.1 4.3 18.3 hg16_dna 165428 165473 (334527) C MIR SINE/MIR (74) 188 159 246 1530 19.8 0.0 0.3 hg16_dna 165474 165653 (334347) C AluJb SINE/Alu (0) 310 130 247 207 0.0 0.0 0.0 hg16_dna 165654 165676 (334324) + (TTG)n Simple_repeat 2 24 (0) 248 1530 19.8 0.0 0.3 hg16_dna 165677 165806 (334194) C AluJb SINE/Alu (180) 130 1 247 256 17.1 4.3 18.3 hg16_dna 165807 165851 (334149) C MIR SINE/MIR (103) 159 109 246 731 24.5 19.4 3.7 hg16_dna 165934 166336 (333664) C LTR33 LTR/ERVL (54) 467 2 249 180 0.0 0.0 0.0 hg16_dna 167088 167107 (332893) + (CAAAA)n Simple_repeat 2 21 (0) 250 1585 16.7 9.9 2.3 hg16_dna 167679 168022 (331978) + MLT1B LTR/MaLR 21 390 (0) 251 302 30.3 13.8 0.2 hg16_dna 168265 168455 (331545) + MIR SINE/MIR 21 242 (20) 252 182 10.5 0.0 2.6 hg16_dna 168918 168956 (331044) + (CGG)n Simple_repeat 2 39 (0) 253 22 3.5 0.0 0.0 hg16_dna 169759 169787 (330213) + AT_rich Low_complexity 1 29 (0) 254 2067 16.3 4.1 0.0 hg16_dna 169875 170212 (329788) C MLT1A0 LTR/MaLR (13) 352 1 255 1084 17.1 2.8 0.0 hg16_dna 171252 171432 (328568) + MER5A DNA/MER1_type 2 187 (2) 256 393 33.0 7.2 14.7 hg16_dna 171656 171831 (328169) + L3 LINE/CR1 570 757 (820) 257 2120 11.2 5.9 4.0 hg16_dna 171832 172205 (327795) C THE1D LTR/MaLR (0) 381 1 258 393 33.0 7.2 14.7 hg16_dna 172206 172531 (327469) + L3 LINE/CR1 757 1024 (553) 257 1356 22.4 7.9 10.8 hg16_dna 172532 172978 (327022) + MLT1D LTR/MaLR 1 435 (70) 259 1915 11.5 0.0 0.0 hg16_dna 172979 173301 (326699) C AluY SINE/Alu (0) 325 3 260 1356 22.4 7.9 10.8 hg16_dna 173302 173371 (326629) + MLT1D LTR/MaLR 435 505 (0) 259 393 33.0 7.2 14.7 hg16_dna 173372 173460 (326540) + L3 LINE/CR1 1024 1118 (459) 257 758 27.9 6.9 5.2 hg16_dna 173461 173751 (326249) + L3 LINE/CR1 1279 1574 (3) 257 920 31.4 6.7 2.2 hg16_dna 174673 175089 (324911) + L1ME LINE/L1 5257 5692 (548) 261 217 37.7 12.1 1.4 hg16_dna 175577 175799 (324201) + L3 LINE/CR1 255 501 (1076) 262 188 30.2 0.0 0.0 hg16_dna 175845 175887 (324113) + MIR SINE/MIR 97 139 (123) 263 491 24.1 8.2 1.4 hg16_dna 175990 176136 (323864) + MIR3 SINE/MIR 41 197 (11) 264 1378 25.7 4.2 0.4 hg16_dna 176201 176788 (323212) C L1MC4 LINE/L1 (93) 7715 7188 265 379 22.2 0.0 0.0 hg16_dna 176845 176925 (323075) + MLT1B LTR/MaLR 310 390 (0) 266 447 23.5 19.1 0.0 hg16_dna 176927 177062 (322938) C L1MC4 LINE/L1 (1422) 6620 6459 265 304 31.8 18.7 2.3 hg16_dna 177491 177838 (322162) + L2 LINE/L2 2258 2662 (652) 267 182 32.9 9.7 2.6 hg16_dna 178147 178374 (321626) + L2 LINE/L2 2658 2901 (413) 267 234 27.9 15.2 2.6 hg16_dna 178874 179024 (320976) + MIR3 SINE/MIR 17 186 (22) 268 273 30.7 11.9 0.0 hg16_dna 179253 179438 (320562) + MIR SINE/MIR 33 245 (17) 269 * 675 27.2 4.6 0.0 hg16_dna 179416 179588 (320412) C MIR SINE/MIR (8) 254 74 270 194 24.5 7.3 3.6 hg16_dna 179652 179673 (320327) + MIR SINE/MIR 193 249 (13) 268 200 18.2 0.0 0.0 hg16_dna 179674 179706 (320294) + L2 LINE/L2 3262 3294 (19) 271 323 2.3 2.3 0.0 hg16_dna 179834 179877 (320123) + (TG)n Simple_repeat 2 46 (0) 272 370 30.3 4.1 0.8 hg16_dna 180391 180513 (319487) C MIR3 SINE/MIR (4) 204 78 273 609 28.1 6.4 2.5 hg16_dna 181460 181684 (318316) C MIR SINE/MIR (0) 262 32 274 448 30.1 5.3 4.5 hg16_dna 182326 182569 (317431) + L2 LINE/L2 2825 3070 (202) 275 210 7.1 0.0 0.0 hg16_dna 182636 182663 (317337) + (T)n Simple_repeat 1 28 (0) 276 2368 9.2 0.0 0.0 hg16_dna 183116 183408 (316592) C AluSx SINE/Alu (19) 293 1 277 2059 11.6 2.8 1.4 hg16_dna 184255 184543 (315457) C AluSx SINE/Alu (19) 293 1 278 261 25.3 3.1 3.1 hg16_dna 184545 184642 (315358) + Charlie7 DNA/MER1_type 2513 2610 (2) 279 2119 9.6 0.3 0.7 hg16_dna 184969 185287 (314713) + AluSx SINE/Alu 1 318 (0) 280 417 32.0 6.8 0.6 hg16_dna 185292 185467 (314533) C MIR SINE/MIR (72) 190 4 281 2403 7.0 0.0 4.1 hg16_dna 185795 186108 (313892) + AluSx SINE/Alu 1 301 (11) 282 1244 14.3 4.6 0.0 hg16_dna 186521 186757 (313243) C L1MA8 LINE/L1 (1) 6290 6043 283 480 29.6 10.1 1.4 hg16_dna 188617 188835 (311165) C MIR SINE/MIR (10) 252 15 284 180 28.2 25.0 1.1 hg16_dna 189069 189244 (310756) C L2 LINE/L2 (12) 3301 3084 285 276 27.3 9.4 4.3 hg16_dna 189454 189591 (310409) C L2 LINE/L2 (584) 2730 2586 285 405 28.2 11.4 1.8 hg16_dna 189971 190197 (309803) C L2 LINE/L2 (780) 2534 2286 285 201 34.5 1.2 0.0 hg16_dna 190247 190330 (309670) + C-rich Low_complexity 6 90 (0) 286 23 3.3 0.0 0.0 hg16_dna 190389 190418 (309582) + AT_rich Low_complexity 1 30 (0) 287 512 31.4 0.6 2.8 hg16_dna 190610 190789 (309211) C MIR SINE/MIR (71) 191 16 288 266 27.9 15.7 1.0 hg16_dna 191163 191306 (308694) + MIR SINE/MIR 16 186 (61) 289 429 26.9 0.0 0.0 hg16_dna 191433 191540 (308460) + MIR SINE/MIR 119 226 (36) 290 1085 29.8 10.5 1.1 hg16_dna 191584 191924 (308076) + L1MC4 LINE/L1 6634 6941 (867) 291 1778 8.1 0.0 0.0 hg16_dna 191925 192135 (307865) + AluSg/x SINE/Alu 86 296 (14) 292 1085 29.8 10.5 1.1 hg16_dna 192136 192413 (307587) + L1MC4 LINE/L1 6941 7340 (468) 291 396 22.1 8.8 0.0 hg16_dna 192457 192569 (307431) + L1MC4 LINE/L1 7918 8040 (2) 291 2704 6.5 0.0 0.0 hg16_dna 192920 193342 (306658) C L1P3 LINE/L1 (566) 5606 5184 293 3871 5.6 1.5 0.0 hg16_dna 193343 193860 (306140) + L1PA8 LINE/L1 5646 6172 (0) 294 400 36.1 5.9 5.7 hg16_dna 194113 194153 (305847) + L2 LINE/L2 2076 2115 (1199) 295 613 18.4 0.0 0.0 hg16_dna 194154 194278 (305722) C L1MA4A LINE/L1 (3) 6300 6176 296 400 36.1 5.9 5.7 hg16_dna 194279 194826 (305174) + L2 LINE/L2 2115 2669 (645) 295 2722 5.1 0.0 0.0 hg16_dna 194827 195137 (304863) + AluY SINE/Alu 1 311 (0) 297 400 36.1 5.9 5.7 hg16_dna 195138 195195 (304805) + L2 LINE/L2 2669 2725 (589) 295 190 28.8 14.8 2.3 hg16_dna 195405 195532 (304468) + L2 LINE/L2 3086 3229 (43) 295 419 28.4 0.8 0.8 hg16_dna 195576 195692 (304308) C MIR3 SINE/MIR (1) 207 91 298 2016 15.7 0.0 1.0 hg16_dna 196264 196565 (303435) C AluJo SINE/Alu (13) 299 1 299 1279 24.3 8.2 5.6 hg16_dna 197992 198453 (301547) C MLT1J LTR/MaLR (8) 503 30 300 283 32.8 9.8 0.8 hg16_dna 198664 198786 (301214) + MER5A DNA/MER1_type 55 188 (1) 301 202 13.9 2.8 0.0 hg16_dna 199132 199167 (300833) + GA-rich Low_complexity 3 39 (0) 302 1130 24.3 8.9 0.3 hg16_dna 199310 199783 (300217) + MER20B DNA/MER1_type 118 667 (116) 303 1555 17.6 0.3 9.9 hg16_dna 200497 200818 (299182) + AluJo SINE/Alu 1 291 (21) 304 762 20.1 1.2 1.2 hg16_dna 201097 201257 (298743) C MER5B DNA/MER1_type (0) 178 18 305 1851 19.4 3.6 3.5 hg16_dna 201864 202317 (297683) + MLT1C LTR/MaLR 1 619 (7) 306 549 31.5 2.7 1.8 hg16_dna 202365 202584 (297416) + MIR SINE/MIR 12 233 (29) 307 362 25.9 0.0 0.0 hg16_dna 203413 203497 (296503) C L2 LINE/L2 (1) 3312 3228 308 900 19.8 1.1 4.2 hg16_dna 204656 204845 (295155) C MER20B DNA/MER1_type (26) 193 10 309 374 22.5 11.2 0.0 hg16_dna 204917 204996 (295004) + MER81 DNA/AcHobo 26 114 (0) 310 279 33.7 6.4 3.0 hg16_dna 205071 205272 (294728) + L2 LINE/L2 3099 3307 (6) 311 769 29.4 0.0 5.4 hg16_dna 205696 205936 (294064) + MIR SINE/MIR 14 241 (21) 312 1973 24.2 3.8 2.2 hg16_dna 205967 206499 (293501) C MLT1F LTR/MaLR (0) 542 2 313 252 17.4 0.0 0.0 hg16_dna 208560 208605 (291395) + MIR SINE/MIR 58 103 (105) 314 318 29.4 6.7 2.2 hg16_dna 208614 208881 (291119) + L2 LINE/L2 2404 2683 (631) 315 549 24.0 4.4 3.3 hg16_dna 209001 209181 (290819) C MIR SINE/MIR (79) 183 1 316 23 6.8 0.0 0.0 hg16_dna 210782 210825 (289175) + AT_rich Low_complexity 1 44 (0) 317 1804 17.2 3.7 1.1 hg16_dna 212415 212765 (287235) C MLT1A0 LTR/MaLR (7) 691 3 318 333 34.0 10.4 0.0 hg16_dna 213334 213477 (286523) C MIR3 SINE/MIR (47) 161 3 319 2394 9.0 0.0 0.0 hg16_dna 214019 214308 (285692) + AluSx SINE/Alu 2 291 (21) 320 384 2.2 0.0 0.0 hg16_dna 214448 214492 (285508) + (CA)n Simple_repeat 1 45 (0) 321 439 21.3 16.0 3.0 hg16_dna 215080 215166 (284834) + MIR SINE/MIR 20 131 (131) 322 1719 11.5 11.2 2.9 hg16_dna 215167 215443 (284557) C AluSx SINE/Alu (12) 300 1 323 439 21.3 16.0 3.0 hg16_dna 215444 215486 (284514) + MIR SINE/MIR 131 167 (95) 322 2313 10.7 0.0 0.3 hg16_dna 215499 215797 (284203) + AluSx SINE/Alu 1 298 (14) 324 2039 14.4 0.7 1.0 hg16_dna 216102 216403 (283597) + AluSx SINE/Alu 3 303 (9) 325 2563 13.0 1.7 0.2 hg16_dna 216881 217297 (282703) C MSTB LTR/MaLR (3) 423 1 326 219 27.5 0.0 6.8 hg16_dna 217593 217666 (282334) + MIR SINE/MIR 36 104 (158) 327 246 17.1 0.0 0.0 hg16_dna 217693 217733 (282267) + L2 LINE/L2 3256 3296 (17) 328 243 30.9 8.8 3.5 hg16_dna 218229 218342 (281658) C L2 LINE/L2 (10) 3262 3143 329 275 27.2 5.7 2.8 hg16_dna 218679 218784 (281216) + Charlie7 DNA/MER1_type 1 109 (2503) 330 448 27.3 7.7 0.7 hg16_dna 219436 219590 (280410) + MIR SINE/MIR 82 247 (15) 327 1674 24.8 12.3 3.9 hg16_dna 220867 221631 (278369) + L2 LINE/L2 2187 2886 (427) 331 2152 12.1 4.8 2.2 hg16_dna 221632 221986 (278014) + THE1B LTR/MaLR 1 364 (0) 332 1674 24.8 12.3 3.9 hg16_dna 221987 222139 (277861) + L2 LINE/L2 2886 3025 (288) 331 2284 12.5 0.3 0.0 hg16_dna 222140 222450 (277550) C AluSx SINE/Alu (0) 312 1 333 1674 24.8 12.3 3.9 hg16_dna 222451 222544 (277456) + L2 LINE/L2 3025 3311 (2) 331 297 29.5 11.9 2.8 hg16_dna 222579 222721 (277279) + MIR SINE/MIR 3 158 (104) 334 271 26.8 8.0 5.3 hg16_dna 222800 222949 (277051) + L2 LINE/L2 2564 2717 (597) 335 3807 23.7 1.6 5.9 hg16_dna 223002 224018 (275982) + L1M4 LINE/L1 34 1006 (5536) 336 349 23.9 0.0 0.0 hg16_dna 224019 224089 (275911) + MLT2B2 LTR/ERVL 380 450 (65) 337 1905 22.9 7.4 1.1 hg16_dna 224094 224758 (275242) + L1M4 LINE/L1 3420 4126 (2518) 336 225 33.5 8.1 3.0 hg16_dna 224888 225084 (274916) + L2 LINE/L2 2886 3092 (180) 335 263 25.5 3.1 4.1 hg16_dna 226153 226250 (273750) C MIR SINE/MIR (157) 105 9 338 2920 13.9 9.5 5.2 hg16_dna 228097 228256 (271744) C LTR36 LTR/ERV1 (0) 611 459 339 2012 11.4 0.0 0.0 hg16_dna 228257 228529 (271471) + AluSx SINE/Alu 1 273 (39) 340 2920 13.9 9.5 5.2 hg16_dna 228530 228946 (271054) C LTR36 LTR/ERV1 (152) 459 9 339 2253 10.9 0.3 1.9 hg16_dna 228947 229263 (270737) + AluSp SINE/Alu 1 312 (1) 341 327 31.0 6.9 1.9 hg16_dna 229362 229534 (270466) + MIR SINE/MIR 70 246 (16) 342 252 0.0 0.0 0.0 hg16_dna 229712 229739 (270261) + (TG)n Simple_repeat 2 29 (0) 343 22 0.0 0.0 0.0 hg16_dna 230888 230909 (269091) + AT_rich Low_complexity 1 22 (0) 344 296 39.0 3.9 8.6 hg16_dna 232568 232974 (267026) + L2 LINE/L2 2881 3268 (4) 345 895 26.8 1.7 1.7 hg16_dna 234654 234892 (265108) C MIR SINE/MIR (23) 239 1 346 2191 10.4 0.3 0.0 hg16_dna 235392 235689 (264311) + AluY SINE/Alu 1 299 (12) 347 1050 20.2 7.2 0.7 hg16_dna 236774 237170 (262830) C L1MDa LINE/L1 (3712) 2828 2398 348 3504 13.5 3.7 6.6 hg16_dna 237171 237866 (262134) C Tigger3(Golem) DNA/MER2_type (0) 3029 2354 349 1169 20.6 0.5 0.0 hg16_dna 237860 238058 (261942) C Tigger3(Golem) DNA/MER2_type (2828) 201 2 349 * 2977 21.6 6.8 1.1 hg16_dna 238061 238810 (261190) C L1MDa LINE/L1 (4141) 2399 1607 348 963 31.4 4.3 3.1 hg16_dna 239234 239271 (260729) C L1MDa LINE/L1 (6098) 442 406 348 2542 11.4 1.1 3.2 hg16_dna 239272 239642 (260358) C THE1B LTR/MaLR (0) 364 2 350 963 31.4 4.3 3.1 hg16_dna 239643 240024 (259976) C L1MDa LINE/L1 (6134) 406 17 348 180 0.0 0.0 0.0 hg16_dna 241191 241210 (258790) + (TG)n Simple_repeat 1 20 (0) 351 415 24.8 1.9 1.9 hg16_dna 242006 242108 (257892) C L2 LINE/L2 (0) 3313 3211 352 831 32.0 14.9 1.0 hg16_dna 242452 242861 (257139) C L3 LINE/CR1 (668) 909 443 353 188 31.7 3.5 3.5 hg16_dna 243628 243712 (256288) + MER5B DNA/MER1_type 1 85 (93) 354 2563 4.4 0.0 0.3 hg16_dna 243778 244074 (255926) C AluY SINE/Alu (15) 296 1 355 2134 10.4 0.0 2.0 hg16_dna 244076 244369 (255631) C AluY SINE/Alu (23) 288 1 356 263 21.0 3.2 1.6 hg16_dna 244370 244432 (255568) + MER5B DNA/MER1_type 114 177 (1) 354 206 20.4 11.4 0.0 hg16_dna 244784 244827 (255173) + MIR SINE/MIR 81 129 (79) 357 2307 11.9 0.0 0.0 hg16_dna 244848 245159 (254841) + AluSx SINE/Alu 1 312 (0) 358 653 28.3 7.6 5.7 hg16_dna 245454 245768 (254232) + MLT1I LTR/MaLR 71 391 (18) 359 2058 12.3 3.0 0.0 hg16_dna 247038 247338 (252662) + AluSx SINE/Alu 1 310 (2) 360 216 0.0 0.0 0.0 hg16_dna 247577 247600 (252400) + (T)n Simple_repeat 1 24 (0) 361 199 34.0 0.0 0.0 hg16_dna 247924 247976 (252024) + L2 LINE/L2 3175 3227 (86) 362 439 23.5 14.2 12.2 hg16_dna 249068 249271 (250729) + MER63A DNA/MER1_type 3 210 (0) 363 716 27.1 2.1 0.5 hg16_dna 249295 249483 (250517) C MIR SINE/MIR (39) 223 32 364 444 27.1 6.8 1.4 hg16_dna 250466 250611 (249389) + MER112 DNA/MER1_type 12 165 (96) 365 1494 23.2 15.6 0.8 hg16_dna 250691 251211 (248789) + Charlie7 DNA/MER1_type 1758 2355 (257) 366 29 6.0 0.0 0.0 hg16_dna 251568 251617 (248383) + AT_rich Low_complexity 1 50 (0) 367 749 30.9 4.2 5.6 hg16_dna 252668 253027 (246973) C MER121 Unknown (50) 362 8 368 442 31.6 5.8 0.5 hg16_dna 253718 253905 (246095) + MIR SINE/MIR 7 204 (58) 369 4996 15.6 3.8 1.3 hg16_dna 255432 256420 (243580) + L1MC2 LINE/L1 5363 6335 (9) 370 183 8.0 0.0 0.0 hg16_dna 259655 259679 (240321) + (CAAAA)n Simple_repeat 4 28 (0) 371 282 7.3 0.0 0.0 hg16_dna 259736 259776 (240224) + (TG)n Simple_repeat 1 41 (0) 372 278 10.5 0.0 0.0 hg16_dna 259795 259832 (240168) + Alu SINE/Alu 1 38 (264) 373 351 0.0 0.0 0.0 hg16_dna 259873 259911 (240089) + (TG)n Simple_repeat 2 40 (0) 374 222 9.1 0.0 0.0 hg16_dna 259956 259988 (240012) + (TG)n Simple_repeat 2 34 (0) 374 522 0.0 0.0 0.0 hg16_dna 260048 260105 (239895) + (TG)n Simple_repeat 2 59 (0) 374 2139 10.0 1.4 0.7 hg16_dna 260123 260438 (239562) + AluSx SINE/Alu 1 318 (0) 375 662 4.0 1.3 0.0 hg16_dna 260738 260813 (239187) C MADE1 DNA/Mariner (0) 80 4 376 903 12.1 0.8 1.5 hg16_dna 261742 261875 (238125) + AluSg/x SINE/Alu 134 266 (44) 377 2489 5.5 0.0 0.3 hg16_dna 263902 264194 (235806) C AluY SINE/Alu (10) 301 10 378 180 0.0 0.0 0.0 hg16_dna 264773 264792 (235208) + (A)n Simple_repeat 1 20 (0) 379 601 23.5 17.3 8.8 hg16_dna 265317 265760 (234240) C L1MC4 LINE/L1 (1) 8041 7560 380 * 1739 29.8 4.2 1.5 hg16_dna 265751 266493 (233507) + L1ME3B LINE/L1 4553 5315 (831) 381 1008 15.9 3.2 0.5 hg16_dna 266494 266683 (233317) + MER52A LTR/ERV1 1510 1704 (51) 382 629 25.7 8.0 1.8 hg16_dna 266698 266923 (233077) + L1ME3B LINE/L1 5559 5798 (442) 381 2115 15.5 3.3 4.1 hg16_dna 266924 267231 (232769) + MLT1B LTR/MaLR 1 307 (83) 383 18403 2.7 0.0 0.1 hg16_dna 267232 270057 (229943) + L1PA3 LINE/L1 3326 6152 (3) 384 2115 15.5 3.3 4.1 hg16_dna 270058 270139 (229861) + MLT1B LTR/MaLR 307 388 (2) 383 886 25.8 7.2 8.1 hg16_dna 270145 270575 (229425) + L1ME3B LINE/L1 5797 6223 (17) 381 2278 7.6 0.0 0.7 hg16_dna 271293 271584 (228416) + AluY SINE/Alu 1 290 (21) 385 473 21.7 18.5 0.8 hg16_dna 271832 271961 (228039) + MIR SINE/MIR 100 252 (10) 386 207 0.0 0.0 0.0 hg16_dna 272328 272350 (227650) + (TA)n Simple_repeat 1 23 (0) 387 692 26.0 13.0 1.5 hg16_dna 272595 273082 (226918) + MLT1G1 LTR/MaLR 5 590 (5) 388 22 5.6 0.0 0.0 hg16_dna 273278 273313 (226687) + AT_rich Low_complexity 1 36 (0) 389 221 35.9 6.0 9.6 hg16_dna 273460 273761 (226239) + L2 LINE/L2 2982 3272 (0) 390 2129 13.5 0.0 0.0 hg16_dna 274301 274603 (225397) + AluSx SINE/Alu 1 303 (9) 391 2065 14.0 0.3 0.3 hg16_dna 274811 275119 (224881) C AluSx SINE/Alu (2) 310 2 392 592 29.4 5.3 3.7 hg16_dna 275693 275821 (224179) C MLT1F LTR/MaLR (6) 549 403 393 1658 18.4 16.5 4.8 hg16_dna 275822 275896 (224104) + MLT2B4 LTR/ERVL 1 66 (490) 394 2048 14.6 0.3 0.0 hg16_dna 275897 276197 (223803) + AluSp SINE/Alu 6 307 (6) 395 1658 18.4 16.5 4.8 hg16_dna 276198 276618 (223382) + MLT2B4 LTR/ERVL 66 556 (0) 394 592 29.4 5.3 3.7 hg16_dna 276619 276695 (223305) C MLT1F LTR/MaLR (152) 403 329 393 2815 23.9 6.5 5.1 hg16_dna 276696 276932 (223068) + L1ME2 LINE/L1 2108 2340 (3879) 396 2078 13.0 0.0 0.7 hg16_dna 276933 277234 (222766) + AluSx SINE/Alu 1 300 (12) 397 2815 23.9 6.5 5.1 hg16_dna 277235 277296 (222704) + L1ME2 LINE/L1 2340 2400 (3819) 396 2355 6.2 0.0 1.0 hg16_dna 277297 277589 (222411) + AluY SINE/Alu 18 307 (4) 398 2815 23.9 6.5 5.1 hg16_dna 277590 278382 (221618) + L1ME2 LINE/L1 2400 3141 (3078) 396 1534 17.8 5.2 2.8 hg16_dna 278383 278671 (221329) + AluJo SINE/Alu 1 296 (16) 399 2815 23.9 6.5 5.1 hg16_dna 278672 278953 (221047) + L1ME2 LINE/L1 3141 3417 (2802) 396 1260 27.4 14.9 5.5 hg16_dna 278958 279506 (220494) + MLT2F LTR/ERVL 5 605 (58) 400 3062 20.8 13.4 0.9 hg16_dna 279618 279769 (220231) + L1ME2 LINE/L1 4874 5006 (1231) 396 351 0.0 0.0 0.0 hg16_dna 279770 279808 (220192) + (CA)n Simple_repeat 2 40 (0) 401 3062 20.8 13.4 0.9 hg16_dna 279809 280849 (219151) + L1ME2 LINE/L1 5006 6227 (10) 396 1857 17.5 0.3 0.0 hg16_dna 280917 281213 (218787) + AluSx SINE/Alu 1 298 (14) 402 189 10.7 0.0 0.0 hg16_dna 281872 281899 (218101) + (T)n Simple_repeat 1 28 (0) 403 349 22.9 0.0 4.1 hg16_dna 282451 282523 (217477) C AluSg/x SINE/Alu (14) 288 219 404 1688 20.3 0.0 0.0 hg16_dna 282872 283172 (216828) C AluJo SINE/Alu (9) 303 3 405 1971 16.8 6.5 10.9 hg16_dna 283503 283559 (216441) C Charlie1b DNA/MER1_type (2238) 523 465 406 1773 17.8 0.7 0.7 hg16_dna 283560 283853 (216147) + AluJb SINE/Alu 1 294 (18) 407 1971 16.8 6.5 10.9 hg16_dna 283854 284336 (215664) C Charlie1b DNA/MER1_type (2296) 465 7 406 204 35.2 9.4 0.9 hg16_dna 284352 284457 (215543) + L2 LINE/L2 3198 3312 (1) 408 340 23.4 1.3 0.0 hg16_dna 284913 284989 (215011) + L1MC5 LINE/L1 7840 7917 (44) 409 25 0.0 0.0 0.0 hg16_dna 285631 285655 (214345) + AT_rich Low_complexity 1 25 (0) 410 272 25.2 17.1 0.0 hg16_dna 286846 286968 (213032) + L2 LINE/L2 1577 1720 (1594) 411 4478 18.3 5.7 2.2 hg16_dna 286969 288323 (211677) + L1MA3 LINE/L1 4888 6298 (7) 412 365 24.8 9.5 4.1 hg16_dna 288908 289054 (210946) + MER77 LTR/ERVL 42 196 (411) 413 * 1070 28.2 5.0 14.6 hg16_dna 288932 289264 (210736) + MER21B LTR/ERV1 24 387 (476) 414 2036 16.0 6.8 3.9 hg16_dna 289265 289679 (210321) C MSTB1 LTR/MaLR (2) 430 4 415 1070 28.2 5.0 14.6 hg16_dna 289680 289890 (210110) + MER21B LTR/ERV1 387 479 (384) 414 1665 19.6 8.8 2.9 hg16_dna 289891 290300 (209700) C Tigger2a DNA/MER2_type (0) 434 1 416 1070 28.2 5.0 14.6 hg16_dna 290301 290509 (209491) + MER21B LTR/ERV1 479 706 (157) 414 541 36.0 6.9 4.3 hg16_dna 290520 291141 (208859) + L2 LINE/L2 2438 3082 (190) 417 224 34.0 14.0 3.7 hg16_dna 291248 291354 (208646) + L2 LINE/L2 3143 3260 (12) 417 809 23.4 7.3 0.5 hg16_dna 292364 292569 (207431) C MIR SINE/MIR (41) 221 2 418 336 26.3 5.2 1.0 hg16_dna 293072 293167 (206833) + MIR3 SINE/MIR 100 199 (9) 419 1978 15.5 0.0 0.0 hg16_dna 293250 293546 (206454) + AluSx SINE/Alu 1 297 (15) 420 2266 10.7 0.0 0.0 hg16_dna 293808 294105 (205895) C AluSc SINE/Alu (11) 298 1 421 22 0.0 0.0 0.0 hg16_dna 295302 295323 (204677) + AT_rich Low_complexity 1 22 (0) 422 377 32.6 6.9 0.6 hg16_dna 296511 296683 (203317) C L2 LINE/L2 (11) 3302 3119 423 222 32.5 9.2 1.1 hg16_dna 297405 297491 (202509) C MIR SINE/MIR (76) 132 39 424 501 35.0 14.2 1.2 hg16_dna 297547 297876 (202124) + L3 LINE/CR1 1081 1453 (124) 425 5281 4.6 0.8 0.3 hg16_dna 298051 298705 (201295) C L1PA7 LINE/L1 (0) 6154 5497 426 15569 7.8 1.5 0.6 hg16_dna 298706 300995 (199005) + L1PA7 LINE/L1 3171 5475 (697) 426 941 23.8 9.4 0.9 hg16_dna 301062 301294 (198706) C MIR SINE/MIR (0) 262 10 427 599 20.9 9.0 1.3 hg16_dna 301541 301695 (198305) C L2 LINE/L2 (5) 3308 3142 428 * 862 26.5 8.6 1.1 hg16_dna 301689 301955 (198045) C L2 LINE/L2 (353) 2961 2675 428 2053 26.4 7.4 6.2 hg16_dna 302595 302765 (197235) + L1ME3A LINE/L1 5327 5494 (676) 429 2195 9.5 0.0 3.9 hg16_dna 302766 302899 (197101) + AluSq SINE/Alu 2 140 (173) 430 2442 6.4 0.0 0.0 hg16_dna 302900 303195 (196805) + AluY SINE/Alu 1 296 (15) 431 2195 9.5 0.0 3.9 hg16_dna 303196 303367 (196633) + AluSq SINE/Alu 140 296 (17) 430 2053 26.4 7.4 6.2 hg16_dna 303368 303929 (196071) + L1ME3A LINE/L1 5494 6075 (95) 429 2492 20.8 9.4 0.3 hg16_dna 303951 304533 (195467) + MER63C DNA/AcHobo 1 636 (294) 432 2458 6.0 0.0 0.7 hg16_dna 304979 305281 (194719) + AluY SINE/Alu 1 301 (10) 433 1723 19.8 3.4 0.3 hg16_dna 305460 305813 (194187) + MLT1A0 LTR/MaLR 1 365 (0) 434 239 35.1 5.3 0.0 hg16_dna 305860 305953 (194047) + L2 LINE/L2 3210 3308 (5) 435 373 33.3 14.4 0.9 hg16_dna 306195 306409 (193591) + MIR SINE/MIR 4 247 (15) 436 189 28.8 0.0 7.8 hg16_dna 306515 306578 (193422) + MIR SINE/MIR 88 146 (62) 437 2200 11.4 0.0 1.3 hg16_dna 306859 307168 (192832) C AluSx SINE/Alu (6) 306 1 438 1671 8.2 0.9 0.9 hg16_dna 307584 307805 (192195) + AluYc2 SINE/Alu 81 302 (9) 439 425 26.3 13.2 0.0 hg16_dna 308026 308177 (191823) + MIR SINE/MIR 77 248 (14) 440 201 15.4 0.0 0.0 hg16_dna 309745 309783 (190217) + A-rich Low_complexity 2 40 (0) 441 189 10.7 0.0 0.0 hg16_dna 310813 310840 (189160) + (A)n Simple_repeat 1 28 (0) 442 946 24.3 3.7 7.7 hg16_dna 312479 312571 (187429) C L1M4 LINE/L1 (871) 5275 5180 443 385 12.1 4.5 0.0 hg16_dna 312572 312637 (187363) C L1PA11 LINE/L1 (3) 6171 6103 444 946 24.3 3.7 7.7 hg16_dna 312638 312971 (187029) C L1M4 LINE/L1 (966) 5180 4865 443 2028 14.8 0.0 0.0 hg16_dna 313180 313477 (186523) + AluSx SINE/Alu 1 298 (14) 445 42508 3.4 2.3 0.2 hg16_dna 313481 319504 (180496) + L1PA3 LINE/L1 1 6151 (4) 446 216 12.2 0.0 0.0 hg16_dna 319508 319548 (180452) + (A)n Simple_repeat 1 41 (0) 447 2307 10.7 0.0 0.3 hg16_dna 319851 320158 (179842) + AluSp SINE/Alu 1 307 (6) 448 1776 12.0 5.0 0.0 hg16_dna 320165 320423 (179577) C AluSx SINE/Alu (40) 272 1 449 22 0.0 0.0 0.0 hg16_dna 320506 320527 (179473) + AT_rich Low_complexity 1 22 (0) 450 26 8.8 0.0 0.0 hg16_dna 320558 320625 (179375) + AT_rich Low_complexity 1 68 (0) 451 1113 28.7 12.7 3.4 hg16_dna 321775 322513 (177487) + L1MEd LINE/L1 442 1249 (5281) 452 320 29.0 18.4 2.9 hg16_dna 322614 322819 (177181) + L1MEd LINE/L1 1712 1949 (4591) 452 985 26.8 4.4 10.2 hg16_dna 322969 323175 (176825) C L2 LINE/L2 (0) 3313 3140 453 7939 3.0 1.4 27.6 hg16_dna 323176 325048 (174952) + SVA Other 3 1384 (2) 454 985 26.8 4.4 10.2 hg16_dna 325049 325251 (174749) C L2 LINE/L2 (173) 3140 2927 453 623 26.8 7.1 1.0 hg16_dna 325232 325427 (174573) C MIR SINE/MIR (3) 259 52 455 * 2238 11.5 9.1 3.8 hg16_dna 325428 325825 (174175) C MSTA LTR/MaLR (9) 419 1 456 231 11.4 0.0 0.0 hg16_dna 325988 326022 (173978) + (A)n Simple_repeat 1 35 (0) 457 2466 8.8 0.0 0.0 hg16_dna 326240 326546 (173454) + AluSg SINE/Alu 1 307 (3) 458 1529 26.4 11.2 0.9 hg16_dna 326988 327549 (172451) + L2 LINE/L2 1359 1978 (1336) 459 500 25.2 5.7 2.5 hg16_dna 327546 327704 (172296) + MIR SINE/MIR 97 260 (2) 460 * 205 31.2 10.2 2.0 hg16_dna 328082 328179 (171821) + L2 LINE/L2 3183 3288 (25) 459 242 31.4 11.8 0.0 hg16_dna 328218 328319 (171681) C MIR SINE/MIR (65) 143 30 461 1478 14.4 10.6 5.3 hg16_dna 328744 329003 (170997) + L1MA9 LINE/L1 5544 5830 (482) 462 459 12.5 0.0 0.0 hg16_dna 329004 329075 (170925) + (CA)n Simple_repeat 1 72 (0) 463 1478 14.4 10.6 5.3 hg16_dna 329076 329173 (170827) + L1MA9 LINE/L1 5830 5921 (391) 462 2267 16.2 3.2 0.5 hg16_dna 329208 329609 (170391) C MSTB LTR/MaLR (13) 413 1 464 1978 13.8 3.7 0.8 hg16_dna 329610 329990 (170010) + L1MA9 LINE/L1 5916 6307 (5) 462 21 0.0 0.0 0.0 hg16_dna 330322 330342 (169658) + AT_rich Low_complexity 1 21 (0) 465 189 7.4 0.0 0.0 hg16_dna 330639 330665 (169335) + (A)n Simple_repeat 1 27 (0) 466 459 26.4 4.8 3.8 hg16_dna 330899 331158 (168842) + MIR SINE/MIR 3 228 (34) 467 487 27.0 7.2 0.2 hg16_dna 331447 331598 (168402) C MIR SINE/MIR (62) 174 10 468 2816 1.3 0.0 0.0 hg16_dna 331824 332133 (167867) + AluYa5 SINE/Alu 1 310 (1) 469 218 34.6 6.9 10.3 hg16_dna 333335 333450 (166550) C L2 LINE/L2 (1) 3271 3160 470 959 14.8 6.5 0.0 hg16_dna 335120 335274 (164726) + FRAM SINE/Alu 1 40 (0) 471 522 20.9 1.9 0.0 hg16_dna 335887 335991 (164009) + U6 snRNA 1 107 (0) 472 23 5.4 0.0 0.0 hg16_dna 336147 336183 (163817) + AT_rich Low_complexity 1 37 (0) 473 1899 17.9 0.0 0.9 hg16_dna 336478 336792 (163208) + AluJo SINE/Alu 1 312 (0) 474 2586 5.8 0.0 0.3 hg16_dna 336795 337106 (162894) + AluY SINE/Alu 1 311 (0) 475 2368 10.2 0.3 0.0 hg16_dna 337110 337413 (162587) + AluSg SINE/Alu 1 305 (5) 476 1907 14.2 5.7 0.0 hg16_dna 338000 338281 (161719) C AluSx SINE/Alu (14) 298 1 477 1966 13.3 7.9 0.8 hg16_dna 339392 339747 (160253) + THE1D LTR/MaLR 1 381 (0) 478 9925 11.6 3.4 3.5 hg16_dna 339748 341327 (158673) + THE1D-int LTR/MaLR 1 1578 (2) 478 2097 11.4 8.5 0.8 hg16_dna 341330 341683 (158317) + THE1D LTR/MaLR 1 381 (0) 478 11230 17.4 6.4 0.7 hg16_dna 341954 344242 (155758) C Cheshire DNA/MER1_type (0) 2420 1 479 643 24.0 3.0 2.4 hg16_dna 344248 344542 (155458) + L1M4 LINE/L1 3061 3357 (2789) 480 3720 22.8 4.8 8.4 hg16_dna 344705 345875 (154125) + L1M4 LINE/L1 3626 4733 (1413) 480 2189 11.2 0.3 0.0 hg16_dna 345876 346170 (153830) + AluSp SINE/Alu 1 296 (17) 481 3720 22.8 4.8 8.4 hg16_dna 346171 346479 (153521) + L1M4 LINE/L1 4733 5052 (1094) 480 900 24.1 5.7 1.6 hg16_dna 346499 346743 (153257) C LTR40a LTR/ERVL (157) 362 108 482 1619 25.0 11.7 3.1 hg16_dna 346746 347422 (152578) C HAL1 LINE/L1 (678) 1829 1095 483 584 19.3 13.8 3.8 hg16_dna 347427 347636 (152364) C L1ME3 LINE/L1 (1) 6161 5931 484 703 20.2 1.1 3.4 hg16_dna 347645 347823 (152177) C L1ME1 LINE/L1 (5) 6161 5987 485 10968 12.5 2.5 0.1 hg16_dna 347853 349603 (150397) + Tigger1 DNA/MER2_type 1 1793 (625) 486 841 16.3 0.0 0.0 hg16_dna 349608 349736 (150264) + FLAM_C SINE/Alu 5 133 (10) 487 1783 10.4 3.0 1.6 hg16_dna 349737 350040 (149960) + Tigger1 DNA/MER2_type 1781 2088 (330) 488 823 16.5 0.0 0.0 hg16_dna 350044 350176 (149824) + FLAM_C SINE/Alu 1 133 (0) 489 963 15.1 0.0 5.0 hg16_dna 351133 351292 (148708) + FRAM SINE/Alu 23 174 (2) 490 223 17.7 3.2 0.0 hg16_dna 351295 351356 (148644) + GA-rich Low_complexity 3 66 (0) 491 1972 11.8 2.9 5.4 hg16_dna 351359 351507 (148493) + Tigger1 DNA/MER2_type 2078 2229 (189) 492 4318 11.5 4.5 0.0 hg16_dna 351508 352149 (147851) + L1PA16 LINE/L1 5488 6158 (8) 493 1972 11.8 2.9 5.4 hg16_dna 352150 352349 (147651) + Tigger1 DNA/MER2_type 2229 2418 (0) 492 780 20.2 7.1 0.0 hg16_dna 352351 352533 (147467) C L1ME1 LINE/L1 (220) 5946 5751 485 692 24.8 12.8 3.4 hg16_dna 352709 353092 (146908) + L1MEd LINE/L1 817 1236 (4883) 494 374 29.8 0.7 1.3 hg16_dna 353145 353297 (146703) + HAL1 LINE/L1 1450 1601 (906) 495 393 28.9 7.4 0.0 hg16_dna 353346 353480 (146520) + MIR SINE/MIR 46 190 (72) 496 2186 10.0 0.7 0.7 hg16_dna 355208 355510 (144490) + AluSq SINE/Alu 1 303 (10) 497 520 29.3 12.0 3.7 hg16_dna 355557 355797 (144203) C MIR SINE/MIR (0) 262 2 498 1738 17.4 0.0 1.0 hg16_dna 355999 356294 (143706) C AluJb SINE/Alu (17) 295 3 499 181 23.5 9.6 1.9 hg16_dna 357242 357293 (142707) C L3 LINE/CR1 (9) 1568 1513 500 981 17.2 1.2 0.0 hg16_dna 357542 357704 (142296) + FRAM SINE/Alu 1 164 (12) 501 2294 10.7 0.0 0.0 hg16_dna 358391 358689 (141311) C AluSc SINE/Alu (10) 299 1 502 732 34.3 10.3 4.4 hg16_dna 358709 359361 (140639) + L2 LINE/L2 2131 2821 (493) 503 271 38.1 3.8 4.7 hg16_dna 359388 359599 (140401) + L2 LINE/L2 2872 3081 (191) 503 459 27.5 16.3 1.9 hg16_dna 359614 359828 (140172) + MIR SINE/MIR 13 258 (4) 504 293 25.8 12.2 1.0 hg16_dna 359901 359998 (140002) + L2 LINE/L2 3205 3313 (0) 503 23 5.4 0.0 0.0 hg16_dna 360376 360412 (139588) + AT_rich Low_complexity 1 37 (0) 505 198 0.0 0.0 0.0 hg16_dna 361517 361538 (138462) + (CCG)n Simple_repeat 1 22 (0) 506 373 32.1 11.8 1.4 hg16_dna 362182 362402 (137598) + MIR SINE/MIR 16 259 (3) 507 588 24.3 11.3 0.0 hg16_dna 362403 362587 (137413) + L1ME3 LINE/L1 5949 6154 (8) 508 292 24.7 8.1 1.2 hg16_dna 362620 362705 (137295) C MIR3 SINE/MIR (6) 202 111 509 2257 12.5 3.4 0.0 hg16_dna 363493 363844 (136156) + THE1B LTR/MaLR 1 364 (0) 510 244 30.6 0.0 0.0 hg16_dna 365617 365678 (134322) + Charlie9 DNA/MER1_type 1 62 (2597) 511 840 24.5 22.1 2.8 hg16_dna 365802 366191 (133809) + LTR50 LTR/ERVL 1 465 (330) 512 654 22.3 5.1 2.0 hg16_dna 366202 366398 (133602) + LTR33A LTR/ERVL 319 521 (2) 513 710 30.6 12.4 1.3 hg16_dna 368371 368900 (131100) C L1ME3B LINE/L1 (203) 6037 5449 514 1570 15.2 3.2 2.5 hg16_dna 369015 369297 (130703) C MLT1E LTR/MaLR (2) 591 307 515 508 30.8 6.8 4.1 hg16_dna 369451 369789 (130211) + L2 LINE/L2 2925 3272 (0) 516 2666 5.2 0.0 0.3 hg16_dna 370055 370366 (129634) C AluY SINE/Alu (0) 311 1 517 466 22.6 4.8 1.6 hg16_dna 370979 371104 (128896) C MIR SINE/MIR (53) 209 80 518 249 34.1 1.2 1.2 hg16_dna 371160 371245 (128755) + MIR SINE/MIR 30 115 (93) 519 1754 12.7 5.2 1.5 hg16_dna 371264 371534 (128466) C AluJo SINE/Alu (31) 281 1 520 2389 8.5 0.0 0.7 hg16_dna 371587 371882 (128118) + AluSc SINE/Alu 1 294 (15) 521 694 21.1 4.0 2.3 hg16_dna 372199 372373 (127627) + MER5B DNA/MER1_type 1 178 (0) 522 32 2.6 0.0 0.0 hg16_dna 372946 372984 (127016) + AT_rich Low_complexity 1 39 (0) 523 527 27.6 5.9 0.5 hg16_dna 374018 374219 (125781) + MIR SINE/MIR 50 262 (0) 524 21 0.0 0.0 0.0 hg16_dna 374259 374279 (125721) + AT_rich Low_complexity 1 21 (0) 525 230 23.1 0.0 0.0 hg16_dna 375366 375417 (124583) + L1ME1 LINE/L1 6110 6161 (5) 526 373 22.0 10.2 7.1 hg16_dna 375862 375988 (124012) + MER5A DNA/MER1_type 10 140 (49) 527 2328 9.9 0.0 0.3 hg16_dna 376411 376713 (123287) C AluSx SINE/Alu (10) 302 1 528 222 25.0 1.3 3.8 hg16_dna 376780 376858 (123142) C L3 LINE/CR1 (43) 1534 1458 529 222 31.2 7.8 2.1 hg16_dna 376973 377113 (122887) + L2 LINE/L2 2944 3092 (180) 530 223 36.5 11.0 0.8 hg16_dna 377189 377315 (122685) + L2 LINE/L2 3133 3272 (0) 530 265 35.5 3.3 3.3 hg16_dna 377688 377897 (122103) C L2 LINE/L2 (674) 2640 2431 531 217 30.0 5.2 5.2 hg16_dna 377947 378062 (121938) + L2 LINE/L2 3153 3268 (4) 530 180 7.7 0.0 0.0 hg16_dna 378286 378311 (121689) + (T)n Simple_repeat 1 26 (0) 532 2243 25.0 5.6 4.7 hg16_dna 379261 380880 (119120) + L1MD2 LINE/L1 65 2020 (4524) 533 642 24.5 3.2 2.1 hg16_dna 380890 381077 (118923) + L1ME1 LINE/L1 5873 6062 (104) 534 2195 8.6 1.7 1.0 hg16_dna 381857 382151 (117849) + AluY SINE/Alu 1 297 (14) 535 376 26.7 4.3 0.0 hg16_dna 382666 382781 (117219) C MER103 DNA (10) 156 36 536 230 12.1 0.0 0.0 hg16_dna 382877 382909 (117091) C MER3 DNA/MER1_type (160) 49 17 537 499 26.7 8.8 3.2 hg16_dna 382914 383130 (116870) C L1ME2 LINE/L1 (147) 6017 5789 538 183 11.3 5.7 0.0 hg16_dna 383152 383204 (116796) + (TA)n Simple_repeat 1 56 (0) 539 1387 16.7 1.3 0.0 hg16_dna 383210 383443 (116557) C L1ME2 LINE/L1 (378) 5786 5550 538 289 24.1 0.0 0.0 hg16_dna 383495 383548 (116452) + MIR3 SINE/MIR 132 185 (23) 540 1935 14.2 0.0 4.3 hg16_dna 384086 384409 (115591) C AluJb SINE/Alu (2) 310 1 541 1739 23.1 4.2 5.3 hg16_dna 384410 384720 (115280) + LTR40a LTR/ERVL 31 337 (182) 542 2821 1.0 0.0 0.0 hg16_dna 384721 385022 (114978) C AluYa5 SINE/Alu (9) 302 1 543 1739 23.1 4.2 5.3 hg16_dna 385023 385204 (114796) + LTR40a LTR/ERVL 337 519 (0) 542 1639 17.7 3.5 6.0 hg16_dna 386436 386832 (113168) + MLT1B LTR/MaLR 4 390 (0) 544 266 25.3 0.0 2.2 hg16_dna 387364 387452 (112548) + L1MC5 LINE/L1 7604 7690 (271) 545 260 27.8 0.0 0.0 hg16_dna 387484 387537 (112463) + polypurine Low_complexity 1 54 (0) 546 731 18.3 0.8 2.2 hg16_dna 387656 387789 (112211) + FLAM_A SINE/Alu 1 132 (1) 547 379 25.2 5.1 2.3 hg16_dna 387848 388005 (111995) C Arthur1 DNA/Tip100 (0) 3940 1 548 807 24.0 2.3 6.6 hg16_dna 388059 388361 (111639) C L1MC5 LINE/L1 (30) 7931 7642 549 1427 20.5 6.5 4.9 hg16_dna 388471 388901 (111099) C L1MC5 LINE/L1 (335) 7626 7189 549 340 22.1 13.3 9.1 hg16_dna 389738 389995 (110005) + MLT1J LTR/MaLR 234 538 (71) 550 2215 10.7 1.3 0.3 hg16_dna 390132 390432 (109568) + AluSx SINE/Alu 1 304 (8) 551 180 0.0 0.0 0.0 hg16_dna 390433 390452 (109548) + (TA)n Simple_repeat 1 20 (0) 552 276 18.8 4.7 0.0 hg16_dna 390459 390522 (109478) + PRIMA4-int LTR/ERV1 502 568 (7702) 553 356 19.3 0.2 0.0 hg16_dna 390981 391051 (108949) + Kanga1 DNA/Tc2 17 88 (1833) 554 436 17.3 23.7 4.3 hg16_dna 391146 391284 (108716) + MER103 DNA 1 166 (0) 555 252 17.4 2.2 0.0 hg16_dna 391802 391847 (108153) + MER5B DNA/MER1_type 129 175 (3) 556 212 28.9 13.2 4.7 hg16_dna 392017 392274 (107726) C L2 LINE/L2 (839) 2475 2196 557 454 30.1 2.9 0.1 hg16_dna 392337 392532 (107468) + MIR SINE/MIR 30 229 (33) 558 209 27.1 2.9 0.0 hg16_dna 393293 393362 (106638) + GA-rich Low_complexity 2 73 (0) 559 397 25.0 1.0 1.0 hg16_dna 393450 393546 (106454) C L2 LINE/L2 (11) 3302 3206 560 272 29.2 20.3 4.0 hg16_dna 393550 393898 (106102) + L2 LINE/L2 2091 2496 (818) 561 1830 18.2 0.6 3.5 hg16_dna 394237 394583 (105417) C MER58B DNA/MER1_type (3) 338 2 562 325 27.8 7.2 1.3 hg16_dna 396365 396517 (103483) C MIR SINE/MIR (80) 182 21 563 339 30.2 10.6 8.3 hg16_dna 397030 397368 (102632) C L1ME4a LINE/L1 (66) 6055 5709 564 249 8.3 0.0 0.0 hg16_dna 397703 397738 (102262) + (TCTCC)n Simple_repeat 4 39 (0) 565 1841 19.4 0.0 0.0 hg16_dna 397744 398053 (101947) C AluJb SINE/Alu (2) 310 1 566 849 26.9 9.2 5.0 hg16_dna 398141 398276 (101724) + L1ME4a LINE/L1 5479 5608 (513) 567 1979 12.4 0.3 1.1 hg16_dna 398277 398596 (101404) + AluSx SINE/Alu 1 318 (0) 568 849 26.9 9.2 5.0 hg16_dna 398597 399013 (100987) + L1ME4a LINE/L1 5608 6056 (65) 567 1511 23.2 10.5 4.9 hg16_dna 399527 400039 (99961) C MLT1F LTR/MaLR (0) 542 1 569 2359 15.2 2.7 4.8 hg16_dna 400896 401336 (98664) + MSTB1 LTR/MaLR 1 432 (0) 570 1090 13.7 0.0 0.6 hg16_dna 401844 402005 (97995) + FRAM SINE/Alu 4 164 (2) 571 2080 13.1 2.4 0.0 hg16_dna 402268 402558 (97442) C AluSx SINE/Alu (14) 298 1 572 504 29.0 8.6 3.5 hg16_dna 402840 403071 (96929) + MIR SINE/MIR 19 262 (0) 573 250 13.6 0.0 0.0 hg16_dna 403216 403259 (96741) + MADE1 DNA/Mariner 1 44 (36) 574 2336 9.3 0.0 0.0 hg16_dna 403280 403569 (96431) C AluSx SINE/Alu (22) 290 1 575 1965 13.5 3.0 1.3 hg16_dna 404141 404440 (95560) + AluSx SINE/Alu 1 305 (7) 576 1700 21.8 3.1 6.8 hg16_dna 404856 405010 (94990) + MER63B DNA/AcHobo 1 160 (902) 577 2130 11.7 0.3 0.0 hg16_dna 405011 405313 (94687) + AluSx SINE/Alu 1 304 (0) 578 1700 21.8 3.1 6.8 hg16_dna 405314 405430 (94570) + MER63B DNA/AcHobo 160 280 (782) 577 1787 12.3 14.9 6.0 hg16_dna 405431 405483 (94517) C MER47A DNA/MER2_type (1957) 366 319 579 2209 14.1 0.0 0.3 hg16_dna 405484 405796 (94204) + AluSx SINE/Alu 1 312 (0) 580 1787 12.3 14.9 6.0 hg16_dna 405797 406076 (93924) C MER47A DNA/MER2_type (2004) 319 1 579 1700 21.8 3.1 6.8 hg16_dna 406077 406253 (93747) + MER63B DNA/AcHobo 280 436 (0) 577 491 27.9 9.8 10.8 hg16_dna 406256 406664 (93336) + HAL1 LINE/L1 101 505 (2002) 581 1107 18.4 15.9 0.0 hg16_dna 406740 406972 (93028) C AluJo SINE/Alu (38) 274 5 582 1326 25.4 15.3 3.0 hg16_dna 406997 407808 (92192) + HAL1 LINE/L1 579 2172 (335) 581 446 23.9 0.8 9.9 hg16_dna 407834 408020 (91980) + MER104 DNA/Tc2 14 159 (9) 583 364 26.8 13.8 6.9 hg16_dna 408057 408317 (91683) + HAL1 LINE/L1 2227 2505 (2) 581 1784 14.9 1.9 5.3 hg16_dna 408330 408648 (91352) + AluSx SINE/Alu 1 308 (4) 584 307 23.3 4.1 0.0 hg16_dna 410686 410758 (89242) C AluJ/FRAM SINE/Alu (0) 302 227 585 855 16.3 7.1 0.0 hg16_dna 410759 410899 (89101) + AluJo/FRAM SINE/Alu 132 282 (30) 586 1719 15.8 0.3 2.6 hg16_dna 410913 411223 (88777) + AluJb SINE/Alu 1 304 (8) 587 1271 19.1 13.2 0.8 hg16_dna 411225 411482 (88518) C AluJo SINE/Alu (12) 290 1 588 219 3.6 0.0 0.0 hg16_dna 411737 411764 (88236) + (CAGCC)n Simple_repeat 5 32 (0) 589 357 32.8 5.5 0.0 hg16_dna 411991 412118 (87882) + L3 LINE/CR1 1191 1325 (252) 590 1851 15.5 0.0 0.3 hg16_dna 412219 412515 (87485) + AluJb SINE/Alu 1 296 (16) 591 297 20.9 0.0 0.0 hg16_dna 412517 412583 (87417) + (CATA)n Simple_repeat 2 68 (0) 592 793 29.3 7.3 1.7 hg16_dna 412682 413038 (86962) C L1MC4a LINE/L1 (1858) 5950 5574 593 373 34.9 10.7 1.0 hg16_dna 413043 413239 (86761) + L3 LINE/CR1 1351 1566 (11) 590 323 11.8 7.3 0.0 hg16_dna 413259 413326 (86674) C L1MA8 LINE/L1 (0) 6291 6219 594 545 34.5 7.5 5.3 hg16_dna 413790 414150 (85850) C L3 LINE/CR1 (128) 1449 1081 595 266 21.0 18.3 3.9 hg16_dna 414507 414610 (85390) + LTR67 LTR/ERVL 432 550 (7) 596 208 34.1 4.8 1.2 hg16_dna 414653 414735 (85265) C L3 LINE/CR1 (647) 930 845 595 2150 11.7 0.3 0.0 hg16_dna 415521 415828 (84172) + AluSc SINE/Alu 1 309 (0) 597 25 0.0 0.0 0.0 hg16_dna 415887 415911 (84089) + AT_rich Low_complexity 1 25 (0) 598 1265 14.9 12.4 1.5 hg16_dna 416510 416782 (83218) + AluJo SINE/Alu 1 303 (9) 599 297 30.6 6.2 0.9 hg16_dna 417438 417549 (82451) C MIR SINE/MIR (94) 168 51 600 661 25.5 9.8 0.5 hg16_dna 417555 417759 (82241) C L1ME2 LINE/L1 (1) 6163 5940 601 301 27.4 3.5 1.2 hg16_dna 418568 418652 (81348) C MER63 DNA/AcHobo (0) 1062 976 602 24 0.0 0.0 0.0 hg16_dna 419376 419399 (80601) + AT_rich Low_complexity 1 24 (0) 603 1222 15.6 2.4 0.0 hg16_dna 419400 419604 (80396) C L1MA6 LINE/L1 (4) 6296 6087 604 225 25.5 2.0 0.0 hg16_dna 420038 420088 (79912) C L2 LINE/L2 (86) 3227 3176 605 * 641 26.3 10.1 7.7 hg16_dna 420081 420327 (79673) C MIR SINE/MIR (0) 262 10 606 304 22.6 3.2 0.0 hg16_dna 420460 420521 (79479) + L3 LINE/CR1 1423 1486 (91) 607 2026 13.7 0.0 0.3 hg16_dna 420621 420927 (79073) C AluSx SINE/Alu (6) 306 1 608 234 0.0 0.0 0.0 hg16_dna 421065 421090 (78910) + (TA)n Simple_repeat 2 27 (0) 609 1945 12.5 0.7 1.0 hg16_dna 421564 421862 (78138) + AluSx SINE/Alu 1 298 (14) 610 2292 10.0 0.0 0.0 hg16_dna 422369 422678 (77322) + AluSx SINE/Alu 1 310 (2) 611 374 37.7 9.3 1.8 hg16_dna 423102 423498 (76502) + L2 LINE/L2 2289 2715 (599) 612 850 19.1 0.6 0.0 hg16_dna 423499 423655 (76345) + FRAM SINE/Alu 1 157 (19) 613 1962 13.0 0.3 0.3 hg16_dna 423747 424054 (75946) + AluSx SINE/Alu 1 308 (4) 614 1090 20.7 7.4 1.3 hg16_dna 425139 425368 (74632) + MIR SINE/MIR 19 262 (0) 615 229 16.7 2.4 0.0 hg16_dna 425404 425445 (74555) C MIR SINE/MIR (117) 145 103 616 2393 5.1 0.0 0.7 hg16_dna 426972 427268 (72732) + AluYc2 SINE/Alu 1 295 (16) 617 260 23.0 19.7 3.4 hg16_dna 428134 428250 (71750) + L2 LINE/L2 3161 3296 (17) 618 21 0.0 0.0 0.0 hg16_dna 428253 428273 (71727) + AT_rich Low_complexity 1 21 (0) 619 238 28.4 23.3 1.6 hg16_dna 428480 428608 (71392) C MIR SINE/MIR (72) 190 34 620 486 7.9 0.0 0.0 hg16_dna 428817 428892 (71108) + (TC)n Simple_repeat 1 76 (0) 621 1782 12.5 0.3 3.5 hg16_dna 428898 429187 (70813) C AluJo SINE/Alu (31) 281 1 622 3122 12.2 1.4 1.8 hg16_dna 429312 429802 (70198) C Tigger5 DNA/MER2_type (0) 2406 1918 623 601 23.6 1.6 7.9 hg16_dna 429801 429937 (70063) C Tigger5 DNA/MER2_type (2186) 220 97 623 * 2249 8.8 0.0 0.3 hg16_dna 429938 430235 (69765) C AluSc SINE/Alu (12) 297 1 624 601 23.6 1.6 7.9 hg16_dna 430236 430286 (69714) C Tigger5 DNA/MER2_type (2309) 97 44 623 294 23.3 9.9 9.9 hg16_dna 431204 431302 (68698) + LTR67 LTR/ERVL 373 474 (83) 625 1044 17.8 5.0 0.0 hg16_dna 431303 431482 (68518) + MER5A DNA/MER1_type 1 189 (0) 626 294 23.3 9.9 9.9 hg16_dna 431483 431563 (68437) + LTR67 LTR/ERVL 473 553 (4) 625 237 22.9 20.0 0.0 hg16_dna 431675 431814 (68186) C Charlie7 DNA/MER1_type (2) 2610 2443 627 216 20.0 0.0 0.0 hg16_dna 432010 432054 (67946) + (TAA)n Simple_repeat 2 46 (0) 628 417 22.2 21.4 0.0 hg16_dna 432081 432206 (67794) C MIR SINE/MIR (71) 191 39 629 395 35.5 5.2 0.0 hg16_dna 432221 432392 (67608) C L2 LINE/L2 (863) 2451 2271 630 637 21.1 0.9 0.0 hg16_dna 432495 432608 (67392) + FRAM SINE/Alu 1 115 (61) 631 272 13.3 0.0 0.0 hg16_dna 432682 432726 (67274) + Alu SINE/Alu 253 297 (5) 631 629 28.4 3.6 4.4 hg16_dna 432891 433140 (66860) + MIR SINE/MIR 15 262 (0) 632 3061 22.4 5.3 3.9 hg16_dna 433467 434356 (65644) + L1ME1 LINE/L1 4697 5593 (740) 633 1992 12.3 0.0 2.6 hg16_dna 434357 434664 (65336) + AluSx SINE/Alu 1 300 (12) 634 3061 22.4 5.3 3.9 hg16_dna 434665 434840 (65160) + L1ME1 LINE/L1 5593 5765 (568) 633 2744 13.4 17.0 0.0 hg16_dna 434842 435305 (64695) C MER66C LTR/ERV1 (12) 543 1 635 1250 21.6 8.1 3.0 hg16_dna 435307 435640 (64360) + L1ME1 LINE/L1 5760 6110 (56) 633 1849 18.3 2.7 4.9 hg16_dna 435641 435674 (64326) C MLT1B LTR/MaLR (31) 359 326 636 1934 11.2 2.5 0.0 hg16_dna 435675 435952 (64048) C AluSx SINE/Alu (27) 285 1 637 1849 18.3 2.7 4.9 hg16_dna 435953 436284 (63716) C MLT1B LTR/MaLR (64) 326 1 636 1851 12.0 2.6 4.9 hg16_dna 436475 436805 (63195) + AluSx SINE/Alu 5 312 (0) 638 485 33.5 5.8 3.5 hg16_dna 437637 437862 (62138) C MIR SINE/MIR (12) 250 20 639 2232 8.9 0.0 0.0 hg16_dna 437995 438285 (61715) C AluSx SINE/Alu (21) 291 1 640 385 29.0 5.7 2.5 hg16_dna 438354 438512 (61488) + L1MD3 LINE/L1 7808 7971 (24) 641 1234 6.6 0.0 0.0 hg16_dna 438515 438665 (61335) + AluSq/x SINE/Alu 1 151 (162) 642 243 8.8 0.0 0.0 hg16_dna 438667 438700 (61300) + (TAAA)n Simple_repeat 2 35 (0) 643 2107 11.6 0.0 0.3 hg16_dna 438708 439010 (60990) C AluSx SINE/Alu (9) 303 2 644 279 23.7 2.6 0.0 hg16_dna 439092 439167 (60833) + MIR SINE/MIR 44 121 (87) 645 3264 26.6 12.5 2.8 hg16_dna 439245 440615 (59385) + HAL1 LINE/L1 1 1504 (1003) 646 1682 16.6 0.3 4.1 hg16_dna 440633 440996 (59004) + AluJo SINE/Alu 1 352 (0) 647 297 24.1 3.8 1.2 hg16_dna 441007 441086 (58914) + L1MD2 LINE/L1 24 105 (6442) 648 629 15.3 1.0 0.0 hg16_dna 441087 441184 (58816) + FLAM_C SINE/Alu 24 122 (21) 649 25 3.1 0.0 0.0 hg16_dna 441186 441217 (58783) + AT_rich Low_complexity 1 32 (0) 650 2584 3.5 0.0 0.9 hg16_dna 441221 441538 (58462) + AluYb8 SINE/Alu 1 315 (3) 651 207 0.0 0.0 0.0 hg16_dna 441555 441577 (58423) + (TTTA)n Simple_repeat 2 24 (0) 652 463 20.4 3.4 0.0 hg16_dna 441630 441717 (58283) + L1MD2 LINE/L1 130 220 (6327) 648 2093 10.7 0.3 0.0 hg16_dna 441734 442042 (57958) + AluSp SINE/Alu 1 310 (0) 653 1995 14.2 0.3 0.0 hg16_dna 442139 442447 (57553) + AluSq SINE/Alu 1 310 (3) 654 248 7.7 2.6 0.0 hg16_dna 442448 442486 (57514) + (GGA)n Simple_repeat 1 40 (0) 655 1422 24.1 6.0 2.1 hg16_dna 442487 442867 (57133) + L1MD3 LINE/L1 7591 7986 (9) 656 2055 10.8 2.4 0.0 hg16_dna 444315 444601 (55399) + AluSx SINE/Alu 3 296 (16) 657 1794 16.7 0.0 0.3 hg16_dna 444727 445033 (54967) + AluJb SINE/Alu 1 306 (6) 658 1918 15.8 0.0 0.6 hg16_dna 445183 445495 (54505) C AluSx SINE/Alu (1) 311 1 659 621 21.5 13.2 0.6 hg16_dna 445497 445655 (54345) C MIR SINE/MIR (76) 186 8 660 859 17.4 11.8 4.4 hg16_dna 445915 446118 (53882) + MER20 DNA/MER1_type 1 219 (0) 661 412 32.1 5.0 4.0 hg16_dna 446809 447009 (52991) + MIR SINE/MIR 35 237 (25) 662 1623 27.8 12.5 2.2 hg16_dna 447277 447588 (52412) + Arthur1 DNA/Tip100 2 280 (3660) 663 1720 17.3 0.3 0.7 hg16_dna 447589 447885 (52115) C AluJb SINE/Alu (14) 298 3 664 1623 27.8 12.5 2.2 hg16_dna 447886 448164 (51836) + Arthur1 DNA/Tip100 280 654 (3286) 663 400 19.7 13.4 0.9 hg16_dna 448164 448353 (51647) + Arthur1 DNA/Tip100 3652 3939 (1) 665 * 1816 9.9 6.8 1.1 hg16_dna 448379 448644 (51356) C AluSx SINE/Alu (13) 299 19 666 22 0.0 0.0 0.0 hg16_dna 450417 450438 (49562) + AT_rich Low_complexity 1 22 (0) 667 938 18.2 6.2 0.5 hg16_dna 450901 451021 (48979) C L1PA13 LINE/L1 (0) 6163 6043 668 2250 14.5 6.0 8.5 hg16_dna 451022 451504 (48496) C L1MB3 LINE/L1 (158) 6025 5555 669 1315 20.0 1.7 2.0 hg16_dna 451505 451800 (48200) C AluJo SINE/Alu (17) 295 1 670 2209 7.8 0.3 3.6 hg16_dna 452048 452354 (47646) + AluSx SINE/Alu 1 297 (15) 671 439 29.0 3.2 0.0 hg16_dna 453469 453592 (46408) + L2 LINE/L2 3186 3313 (0) 672 867 12.0 0.0 0.0 hg16_dna 453676 453792 (46208) C FLAM_C SINE/Alu (16) 117 1 673 2144 9.8 0.0 1.0 hg16_dna 454012 454310 (45690) C AluSq SINE/Alu (17) 296 1 674 187 3.1 3.0 3.0 hg16_dna 454396 454428 (45572) + (TAAAA)n Simple_repeat 2 34 (0) 675 1931 8.9 7.1 0.0 hg16_dna 454957 455225 (44775) + AluSc SINE/Alu 5 292 (17) 676 710 18.7 1.5 2.2 hg16_dna 456305 456441 (43559) + FLAM_A SINE/Alu 1 136 (6) 677 229 11.4 4.5 0.0 hg16_dna 456850 456893 (43107) C L2 LINE/L2 (0) 3313 3268 678 438 30.6 16.3 2.9 hg16_dna 458321 458529 (41471) + MIR SINE/MIR 16 252 (10) 679 22 0.0 0.0 0.0 hg16_dna 458981 459002 (40998) + AT_rich Low_complexity 1 22 (0) 680 22 0.0 0.0 0.0 hg16_dna 459068 459089 (40911) + AT_rich Low_complexity 1 22 (0) 681 2124 11.3 0.0 0.0 hg16_dna 459208 459533 (40467) + AluSg SINE/Alu 1 326 (0) 682 1148 16.1 0.8 10.7 hg16_dna 460279 460521 (39479) C MER20 DNA/MER1_type (0) 219 1 683 264 5.9 0.0 0.0 hg16_dna 460701 460734 (39266) + (GAAAA)n Simple_repeat 2 35 (0) 684 2003 20.4 6.2 0.9 hg16_dna 461227 461647 (38353) C L1MD3 LINE/L1 (13) 7982 7540 685 294 18.2 9.1 0.0 hg16_dna 461670 461735 (38265) C MER112 DNA/MER1_type (84) 177 106 686 2060 14.2 0.0 0.0 hg16_dna 461736 462046 (37954) C AluSx SINE/Alu (1) 311 1 687 365 1.6 6.5 0.0 hg16_dna 462047 462108 (37892) + (TA)n Simple_repeat 2 67 (0) 688 551 4.4 0.0 0.0 hg16_dna 462117 462184 (37816) + AluY SINE/Alu 2 69 (241) 689 322 23.9 10.9 0.0 hg16_dna 463136 463227 (36773) C L2 LINE/L2 (5) 3267 3166 690 427 31.4 2.8 10.2 hg16_dna 463396 463572 (36428) C L2 LINE/L2 (1) 3271 3108 691 21 0.0 0.0 0.0 hg16_dna 464426 464446 (35554) + AT_rich Low_complexity 1 21 (0) 692 1844 12.6 1.1 0.3 hg16_dna 464448 464734 (35266) + AluSx SINE/Alu 1 289 (23) 693 446 4.9 0.0 1.6 hg16_dna 464740 464801 (35199) + (GGAA)n Simple_repeat 4 64 (0) 694 431 30.8 23.2 3.3 hg16_dna 465307 465608 (34392) C L3 LINE/CR1 (7) 1570 1209 695 2149 11.6 0.3 0.0 hg16_dna 465660 465962 (34038) + AluSx SINE/Alu 1 304 (8) 696 1776 14.8 0.0 3.1 hg16_dna 465974 466292 (33708) + AluJb SINE/Alu 1 310 (0) 697 662 28.7 12.6 6.2 hg16_dna 466327 466716 (33284) C L2 LINE/L2 (76) 3237 2823 698 774 27.6 2.0 1.5 hg16_dna 466744 466938 (33062) C L3 LINE/CR1 (399) 1178 983 695 2188 8.1 0.0 3.2 hg16_dna 467001 467308 (32692) C AluSx SINE/Alu (6) 306 9 699 577 20.2 12.3 0.0 hg16_dna 467473 467586 (32414) C FLAM_A SINE/Alu (5) 128 1 700 1123 32.1 10.4 2.4 hg16_dna 467646 468114 (31886) C L3 LINE/CR1 (708) 869 363 695 2418 7.1 0.0 0.3 hg16_dna 468333 468642 (31358) C AluY SINE/Alu (2) 309 1 701 1691 15.2 7.2 7.5 hg16_dna 468814 469189 (30811) + THE1C LTR/MaLR 1 375 (0) 702 22 5.6 0.0 0.0 hg16_dna 469194 469229 (30771) + AT_rich Low_complexity 1 36 (0) 703 5880 12.7 1.2 3.3 hg16_dna 469230 470251 (29749) C L1PA16 LINE/L1 (9) 6157 5155 704 2415 16.1 4.7 0.5 hg16_dna 470278 470725 (29275) C Charlie1b DNA/MER1_type (22) 501 35 705 2228 9.0 0.0 2.6 hg16_dna 471206 471512 (28488) + AluSx SINE/Alu 1 299 (13) 706 2027 9.5 2.8 0.0 hg16_dna 471524 471807 (28193) + AluSq SINE/Alu 3 294 (19) 707 491 30.9 0.0 0.7 hg16_dna 472990 473129 (26871) + MIR3 SINE/MIR 63 201 (7) 708 448 30.2 12.2 0.6 hg16_dna 475019 475198 (24802) + MIR SINE/MIR 23 223 (39) 709 313 17.5 0.0 9.2 hg16_dna 475964 476158 (23842) + G-rich Low_complexity 3 179 (0) 710 429 10.4 0.0 0.0 hg16_dna 476415 476491 (23509) + (CAGCC)n Simple_repeat 3 79 (0) 711 216 16.3 0.0 0.0 hg16_dna 476497 476539 (23461) + (CGG)n Simple_repeat 2 44 (0) 712 1671 13.5 5.7 0.3 hg16_dna 477451 477733 (22267) + AluJb SINE/Alu 1 298 (14) 713 470 28.2 13.2 4.0 hg16_dna 478070 478372 (21628) + MER102b DNA/MER1_type 1 331 (10) 714 200 35.8 10.7 1.8 hg16_dna 478635 478802 (21198) + MIR SINE/MIR 21 203 (59) 715 254 22.9 2.7 4.1 hg16_dna 478836 478908 (21092) + MIR SINE/MIR 185 256 (6) 715 1318 15.8 3.7 1.2 hg16_dna 478935 479177 (20823) C AluJo SINE/Alu (61) 251 3 716 232 28.2 4.0 4.0 hg16_dna 479213 479286 (20714) C MER5A DNA/MER1_type (69) 120 47 717 2033 9.4 3.5 0.3 hg16_dna 479863 480150 (19850) + AluSq SINE/Alu 1 297 (16) 718 2208 10.9 0.0 0.0 hg16_dna 480151 480454 (19546) + AluSq SINE/Alu 1 304 (9) 719 426 23.1 6.5 5.7 hg16_dna 480505 480628 (19372) C L2 LINE/L2 (19) 3294 3170 720 1936 12.5 0.0 1.3 hg16_dna 481640 481938 (18062) + AluSx SINE/Alu 1 295 (17) 721 1895 10.9 0.0 6.4 hg16_dna 483111 483424 (16576) + AluSq SINE/Alu 1 294 (19) 722 21 5.7 0.0 0.0 hg16_dna 484107 484141 (15859) + AT_rich Low_complexity 1 35 (0) 723 192 30.8 0.0 3.7 hg16_dna 485549 485602 (14398) + MIR SINE/MIR 74 125 (83) 724 1740 14.0 1.9 3.2 hg16_dna 486335 486644 (13356) C AluJo SINE/Alu (1) 311 6 725 1551 20.8 0.0 1.7 hg16_dna 487137 487435 (12565) + AluJb SINE/Alu 19 312 (0) 726 2299 9.7 0.0 0.0 hg16_dna 487494 487803 (12197) + AluSg SINE/Alu 1 310 (0) 727 297 33.9 5.2 0.0 hg16_dna 487850 487964 (12036) C L2 LINE/L2 (0) 3272 3152 728 1759 17.0 0.0 0.9 hg16_dna 488161 488466 (11534) + AluJo SINE/Alu 1 305 (7) 729 354 2.3 0.0 0.0 hg16_dna 488467 488509 (11491) + (CCA)n Simple_repeat 1 43 (0) 730 2089 12.2 0.3 0.0 hg16_dna 488811 489121 (10879) C AluSx SINE/Alu (0) 312 1 731 356 28.0 5.5 1.8 hg16_dna 489211 489319 (10681) + MIR3 SINE/MIR 87 199 (9) 732 200 24.6 1.8 0.0 hg16_dna 489600 489656 (10344) + (TA)n Simple_repeat 1 58 (0) 733 263 26.8 5.6 0.0 hg16_dna 489712 489782 (10218) C MIR SINE/MIR (10) 252 178 734 186 31.1 16.0 0.0 hg16_dna 490143 490261 (9739) + L3b LINE/CR1 1370 1507 (76) 735 2014 11.9 0.0 0.7 hg16_dna 490590 490886 (9114) + AluSx SINE/Alu 1 295 (17) 736 1582 16.9 1.3 2.3 hg16_dna 492107 492408 (7592) C AluJb SINE/Alu (13) 299 1 737 961 15.4 5.9 0.0 hg16_dna 492409 492577 (7423) C FRAM SINE/Alu (3) 173 1 738 1915 15.2 0.0 0.0 hg16_dna 493347 493648 (6352) + AluJb SINE/Alu 1 302 (10) 739 639 29.2 2.2 3.5 hg16_dna 493799 494025 (5975) + MER58A DNA/MER1_type 1 224 (0) 740 546 20.9 2.7 0.0 hg16_dna 494233 494342 (5658) + MER81 DNA/AcHobo 1 113 (1) 741 504 29.9 8.9 1.2 hg16_dna 494348 494516 (5484) + MIR SINE/MIR 11 192 (70) 742 748 16.1 0.0 4.1 hg16_dna 494524 494646 (5354) + FLAM_C SINE/Alu 2 119 (24) 743 824 8.3 1.6 0.0 hg16_dna 494647 494767 (5233) + (GAAA)n Simple_repeat 2 124 (0) 744 1916 11.6 2.7 0.7 hg16_dna 494913 495208 (4792) + AluSx SINE/Alu 1 302 (10) 745 2196 9.3 2.0 0.3 hg16_dna 495997 496299 (3701) + AluSg SINE/Alu 1 308 (2) 746 574 21.5 10.3 0.7 hg16_dna 496603 496747 (3253) + MER5B DNA/MER1_type 1 159 (19) 747 501 11.2 0.0 0.0 hg16_dna 496762 496841 (3159) + FLAM_C SINE/Alu 64 143 (0) 748 738 27.2 2.1 5.1 hg16_dna 496855 497090 (2910) C MIR SINE/MIR (3) 259 31 749 26 0.0 0.0 0.0 hg16_dna 497578 497603 (2397) + AT_rich Low_complexity 1 26 (0) 750 1684 16.2 1.3 1.3 hg16_dna 497650 497949 (2051) C AluJo SINE/Alu (12) 300 1 751 1493 6.3 0.5 0.0 hg16_dna 498955 499143 (857) C AluSq SINE/Alu (123) 190 1 752 2148 9.1 0.7 0.7 hg16_dna 499145 499444 (556) C AluSx SINE/Alu (12) 300 1 753 191 26.7 11.2 8.8 hg16_dna 499602 499761 (239) + MIR SINE/MIR 20 183 (79) 754