FGENESH 2.0 Prediction of potential genes in Homo_sapiens genomic DNA Time : Tue Mar 9 06:29:27 2004 Seq name: hg16_dna Length of sequence: 500000 Number of predicted genes 6 in +chain 3 in -chain 3 Number of predicted exons 29 in +chain 15 in -chain 14 Positions of predicted genes and exons: G Str Feature Start End Score ORF Len 1 + TSS 115018 -5.39 1 + 1 CDSf 117077 - 117141 4.86 117077 - 117139 63 1 + 2 CDSi 119452 - 119536 11.05 119453 - 119536 84 1 + 3 CDSi 152058 - 152186 4.37 152058 - 152186 129 1 + 4 CDSl 159523 - 159702 -4.00 159523 - 159702 180 1 + PolA 159834 1.12 2 - PolA 161287 1.12 2 - 1 CDSl 161334 - 161401 -2.84 161334 - 161399 66 2 - 2 CDSi 163308 - 163360 7.67 163309 - 163359 51 2 - 3 CDSf 187852 - 187943 9.97 187854 - 187943 90 2 - TSS 188055 -9.69 3 + TSS 203801 -7.29 3 + 1 CDSf 203925 - 204013 9.35 203925 - 204011 87 3 + 2 CDSi 207798 - 207962 13.94 207799 - 207960 162 3 + 3 CDSi 211054 - 211256 1.32 211055 - 211255 201 3 + 4 CDSi 214590 - 214649 8.74 214592 - 214648 57 3 + 5 CDSi 217851 - 217930 -6.46 217853 - 217930 78 3 + 6 CDSi 225165 - 225260 8.51 225165 - 225260 96 3 + 7 CDSi 246798 - 246902 2.21 246798 - 246902 105 3 + 8 CDSi 247700 - 247772 0.56 247700 - 247771 72 3 + 9 CDSi 254441 - 254534 1.79 254443 - 254532 90 3 + 10 CDSl 259455 - 259542 -2.35 259456 - 259542 87 3 + PolA 259720 1.12 4 - PolA 262589 -1.68 4 - 1 CDSl 262662 - 262860 12.05 262662 - 262859 198 4 - 2 CDSi 264438 - 264564 4.66 264440 - 264562 123 4 - 3 CDSi 281534 - 281668 5.81 281535 - 281666 132 4 - 4 CDSi 284590 - 284716 -1.66 284591 - 284716 126 4 - 5 CDSi 285436 - 285594 12.70 285436 - 285594 159 4 - 6 CDSi 294582 - 294687 5.93 294582 - 294686 105 4 - 7 CDSi 334185 - 334345 11.88 334187 - 334345 159 4 - 8 CDSi 337738 - 337809 0.99 337738 - 337809 72 4 - 9 CDSi 426407 - 426496 1.66 426407 - 426496 90 4 - 10 CDSf 449591 - 449947 15.14 449591 - 449947 357 4 - TSS 450567 -6.49 5 - PolA 460586 1.12 5 - 1 CDSo 462265 - 462567 12.42 462265 - 462567 303 5 - TSS 462837 -8.19 6 + TSS 482054 -12.59 6 + 1 CDSo 482113 - 482577 37.86 482113 - 482577 465 6 + PolA 482726 -1.08 Predicted protein(s): >FGENESH:[mRNA] 1 4 exon (s) 117077 - 159702 459 bp, chain + atgcctaacttcactctcccaagatggaaaccccagcttgctgcagacagctatctcctt agaaggaaacagttccgggacattgaccagccaggctatgagactgtggtacaggccctg cactgggctgctgtggcctgggggagggagactcaaggatcacagatgccttgctcagtg gggctggagaagcaaaccagtgataaatttggtgctgagctcgtgcagcaagacccagac cccgtgctgctgtccagaccaacgtcccctcctgaagaacaccctttcctctcagatcct cgtggaggtgagtgggagatcccatcaggcagcagaaggcagagaaaagccagccacaca gtggaggggaggtggccaggccagggcggcagcgtagaacagtggaagcgaagccttcag gcccgagagaacaggctcctggtctcagagtgctcttag >FGENESH: 1 4 exon (s) 117077 - 159702 152 aa, chain + MPNFTLPRWKPQLAADSYLLRRKQFRDIDQPGYETVVQALHWAAVAWGRETQGSQMPCSV GLEKQTSDKFGAELVQQDPDPVLLSRPTSPPEEHPFLSDPRGGEWEIPSGSRRQRKASHT VEGRWPGQGGSVEQWKRSLQARENRLLVSECS >FGENESH:[mRNA] 2 3 exon (s) 161334 - 187943 213 bp, chain - atggggctcccagctctggcccggtggctagacggggcgtcaggacagggccaccacctc ctgggctggcactggaggcgtgtttccagcaggctaaccccaggggcctgtgacatcaga actccatccccagtgctgtgccaaggcatcgcagcttcagggggattacggaacaccagc gcacagaagaagtacacggtaactgatagttag >FGENESH: 2 3 exon (s) 161334 - 187943 70 aa, chain - MGLPALARWLDGASGQGHHLLGWHWRRVSSRLTPGACDIRTPSPVLCQGIAASGGLRNTS AQKKYTVTDS >FGENESH:[mRNA] 3 10 exon (s) 203925 - 259542 1053 bp, chain + atgaggcaaaggacttgggctgccagtggcttaggacatcttagctgccagcttcccttc tctgccagcagcacgggggttggtcagagaaacagcttctcagtgaaaattgtcatgaca acctggagagaggaaacgttctactgcaagccgagcgtggggaccgagggtcggcgtcac agtgagagagccatgatggaggacggggtcaccctgcttgcccaacgcggggagctccgt catacagaaccccagtttctgcttggactccctgagggcgtgcctgggaaacccactgca gggcccccagtccatggtcccagaggtgtgaaggcatctgcttcaccttccatgccggcc tcccaggagatgaggaggaattcagtcccacgttcgggcaaccgttgctcagcattagca gccgtcagcaagttgacactggagctccagccaagtggatcagccccagctctggggccc aggactgcttggctcatcgaagaatcccgccatgcaggtctggcaacacctcagggccaa ttccagcaactccaggctaaggttgaggctggaggccactttgctcaagaagctgaatcc tggaagacaggaacggtgattccaatagcttgcagggtgcttctcactagcaaggcacat caacctttgctgaataaacgacctcaggataagacaacttcaagatgggctaagaccaga tgtgggcctggaaaaatggagggaaatgtagcactgaaaagatattgtgaccggcagctg tatcatcatccacggcagagctctccatcaacagctgtcaaagaaatcatgctaaggggc aaacgcaactatacagtaaatcatccggaaggtgcagttgaagtggtgacatccagccag ggagggggaggagcacctgagtaccagcctccagccttggggcatcagttgttggaacca gccagagctcctactcactgtgtcttggaccaaccaatacacgtctacagaatgaaggga ctatctgatcagatatctgcaaagcagacttag >FGENESH: 3 10 exon (s) 203925 - 259542 350 aa, chain + MRQRTWAASGLGHLSCQLPFSASSTGVGQRNSFSVKIVMTTWREETFYCKPSVGTEGRRH SERAMMEDGVTLLAQRGELRHTEPQFLLGLPEGVPGKPTAGPPVHGPRGVKASASPSMPA SQEMRRNSVPRSGNRCSALAAVSKLTLELQPSGSAPALGPRTAWLIEESRHAGLATPQGQ FQQLQAKVEAGGHFAQEAESWKTGTVIPIACRVLLTSKAHQPLLNKRPQDKTTSRWAKTR CGPGKMEGNVALKRYCDRQLYHHPRQSSPSTAVKEIMLRGKRNYTVNHPEGAVEVVTSSQ GGGGAPEYQPPALGHQLLEPARAPTHCVLDQPIHVYRMKGLSDQISAKQT >FGENESH:[mRNA] 4 10 exon (s) 262662 - 449947 1533 bp, chain - atggactttcactttggaaaatataaaatcgtgtttgttttaccttacgaaacaactgga gcctctggaagacgaggctgtacggtgcgttgtgtaacccgcctggggaatcacgttgca cagacaagtcccacaggcttttactgcaataataagcttgatcttcttattcaaatacaa gtaacaaccacagccggctccaagtcacgtgtccaggtcacatggcacacagacgcagaa gccgactggcaatcattagccaatgcttactaccaggaagaaaatcctggcattaaagac acgaactcagtttttataaaacaaccaggactgcaagagaaggcatttgatgtggggcaa atgggggatctcagaagtcttaatgaagtaactatccctgaacactgggatcaatactca gcatccagctgtcaaatcaacaccaagggggtgatgcagcagattcagagacattgccag tcagtcagagatccagctatcaaaggcaaatggcaacaggttcggcaggaattattggag gaatatgaacaagttaaaagtattgtcagcactttagaaagttttaaaattgacaagcct ccagatttccctgtgtcctgtcaagatgaaccatttagagatcctgctgtttggccaccc cctgttcctgcagaacacagggatgacatagcagatctggaagaagctaagaagttgcta agggaagctgttgttcttccaatgtggatgcctgactttttcaaagggattagaaggcca tggaagggtgtactgatggttggacccccaggcactggtaaaactatgctagctaaagct gttgccactgaatgtggtacaacattcttcaacgtttcgtcttctacactgacatctaaa tacagaggtgaatctgagaagttagttcgtctgttgtttgagatggctagattttatgcc cctaccacgatcttcattgatgagatagattctatctgcagtcgaagaggaacctctgat gaacatgaggcaagtcgcagggtcaagtctgaactgctcattcagatggatggagttgga ggagctttagaaaatgatgatccttccaaaatggttatggtattggctgctactaatttc ccgtgggacattgatgaagctttgcgaagaaggttagaaaaaaggatatatatacctctc ccaacagcaaaaggaagagctgagcttctgaagatcaaccttcgtgaggtcgaattagat cctgatattcaactggaagatatagccgagaagattgagggctattctggtgctgacatc actaatgtttgcagggatgcctctttaatggcaatgagacggcgtatcaatggcttaagt ccagaagaaatccgtgcactttctaaagaggaacttcagatgcctgttaccaaaggagac tttgaattggccctaaagaaaattgctaagtctgtctctgctgcagacttggagaagtat gaaaaatggatggttgaatttggatctgcttga >FGENESH: 4 10 exon (s) 262662 - 449947 510 aa, chain - MDFHFGKYKIVFVLPYETTGASGRRGCTVRCVTRLGNHVAQTSPTGFYCNNKLDLLIQIQ VTTTAGSKSRVQVTWHTDAEADWQSLANAYYQEENPGIKDTNSVFIKQPGLQEKAFDVGQ MGDLRSLNEVTIPEHWDQYSASSCQINTKGVMQQIQRHCQSVRDPAIKGKWQQVRQELLE EYEQVKSIVSTLESFKIDKPPDFPVSCQDEPFRDPAVWPPPVPAEHRDDIADLEEAKKLL REAVVLPMWMPDFFKGIRRPWKGVLMVGPPGTGKTMLAKAVATECGTTFFNVSSSTLTSK YRGESEKLVRLLFEMARFYAPTTIFIDEIDSICSRRGTSDEHEASRRVKSELLIQMDGVG GALENDDPSKMVMVLAATNFPWDIDEALRRRLEKRIYIPLPTAKGRAELLKINLREVELD PDIQLEDIAEKIEGYSGADITNVCRDASLMAMRRRINGLSPEEIRALSKEELQMPVTKGD FELALKKIAKSVSAADLEKYEKWMVEFGSA >FGENESH:[mRNA] 5 1 exon (s) 462265 - 462567 303 bp, chain - atgcggggcccgcgagtcctcccgacacgcagtccaggccaaggcccgccctggagaact gagcagagcgggccgcgccgggactgcacgcgcttctcctttgcaagccggttcttcatt cagcttccaaggacacaacatgatctcatctttcgacgctcttccaaacatcttacaaca ggcataggtccacgtatgggggaccccaaatgtcccgccaggctggcccccgacgctgac cgttcccggagctgctgggcccgcagaacacaagagcgttgctccgcagtcagcggtcac taa >FGENESH: 5 1 exon (s) 462265 - 462567 100 aa, chain - MRGPRVLPTRSPGQGPPWRTEQSGPRRDCTRFSFASRFFIQLPRTQHDLIFRRSSKHLTT GIGPRMGDPKCPARLAPDADRSRSCWARRTQERCSAVSGH >FGENESH:[mRNA] 6 1 exon (s) 482113 - 482577 465 bp, chain + atggcggccagcaggaggctgatgaaggagcttgaagaaatccgcaaatgtggaatggaa aacttccgtaacatccaggttgatgaagctaatttattgacttggcaagggcttattgtt cctgacaaccctccgtataataagggggccttcagaatcgaaatcaactttccagcagag tacccattcaaaccaccgaggatcacatttaaaacaaagatctatcacccgaacatcgac gaaaaggggcaggtctgtctgccagtaattagtgctgaaaactggaagccagcaaccaaa accgaccaagtaatccagtccctcatagcactggtgaatgacccgcagcccgagcacccg cttcgggctgacctagctgaagaatactctaacgaccgtaaaaaattctgtaagaatgct gaagagtttacaaagaaatatggggaaaagcgacctgtggactaa >FGENESH: 6 1 exon (s) 482113 - 482577 154 aa, chain + MAASRRLMKELEEIRKCGMENFRNIQVDEANLLTWQGLIVPDNPPYNKGAFRIEINFPAE YPFKPPRITFKTKIYHPNIDEKGQVCLPVISAENWKPATKTDQVIQSLIALVNDPQPEHP LRADLAEEYSNDRKKFCKNAEEFTKKYGEKRPVD
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