Sequence type explicitly set to Protein
Sequence format is Pearson
Sequence 1: gi|M86664|EHV1|121246-121944      123 aa
Sequence 2: gi|M86664|EHV1|complem            123 aa
Sequence 3: gi|330915|gb|AAA46091.1|          110 aa
Start of Pairwise alignments
Aligning...
Sequences (2:3) Aligned. Score:  41
Sequences (1:2) Aligned. Score:  100
Sequences (1:3) Aligned. Score:  41
Guide tree        file created:   [clustalw.dnd]
Start of Multiple Alignment
There are 2 groups
Aligning...
Group 1: Sequences:   2      Score:2112
Group 2: Sequences:   3      Score:762
Alignment Score 1286
CLUSTAL-Alignment file created  [clustalw.aln]
CLUSTAL W (1.81) multiple sequence alignment


gi|M86664|EHV1|121246-121944      AQPSSGDPGPAQLRRPRPSHAPRTAVRGVRRILPHGPAGDAVHQPPHPVP
gi|M86664|EHV1|complem            AQPSSGDPGPAQLRRPRPSHAPRTAVRGVRRILPHGPAGDAVHQPPHPVP
gi|330915|gb|AAA46091.1|          SNPSSGDPGPAQLRRPRPSPAPATPAQ-----PSSGDPGPAQLRRPRPSP
                                  ::***************** ** *..:      . * .* *  : *:* *

gi|M86664|EHV1|121246-121944      DPLAPGGGPVPTLQPAHRRRARAREAPRRLGPSGIRNAAIPAGPAPVPGP
gi|M86664|EHV1|complem            DPLAPGGGPVPTLQPAHRRRARAREAPRRLGPSGIRNAAIPAGPAPVPGP
gi|330915|gb|AAA46091.1|          APATPAQPSSGDPGPAQLRRPRPSPAP--------ATPAQPSSGDPGPAQ
                                   * :*.  .     **: **.*.  **         ..* *:.  * *. 

gi|M86664|EHV1|121246-121944      GARGVLRPAVAPRCEPPRGGRQP
gi|M86664|EHV1|complem            GARGVLRPAVAPRCEPPRGGRQP
gi|330915|gb|AAA46091.1|          LRRPRPSPAPATPAQPSSGDPGP
                                    *    ** *. .:*. *.  *

(
gi|M86664|EHV1|121246-121944:0.00000,
gi|M86664|EHV1|complem:0.00000,
gi|330915|gb|AAA46091.1|:0.58182);