Sequence type explicitly set to Protein
Sequence format is Pearson
Sequence 1: gi|M86664|EHV1|121246-121944       84 aa
Sequence 2: gi|M86664|EHV1|complem             84 aa
Sequence 3: gi|330915|gb|AAA46091.1|           79 aa
Start of Pairwise alignments
Aligning...
Sequences (1:2) Aligned. Score:  100
Sequences (1:3) Aligned. Score:  54
Sequences (2:3) Aligned. Score:  54
Guide tree        file created:   [clustalw.dnd]
Start of Multiple Alignment
There are 2 groups
Aligning...
Group 1: Sequences:   2      Score:1448
Group 2: Sequences:   3      Score:639
Alignment Score 1054
CLUSTAL-Alignment file created  [clustalw.aln]
CLUSTAL W (1.81) multiple sequence alignment


gi|M86664|EHV1|121246-121944      TPAPATPAQPSSGDPGPAQLRRPRPSHAPRTAVRGVRRILPHGPAGDAVH
gi|M86664|EHV1|complem            TPAPATPAQPSSGDPGPAQLRRPRPSHAPRTAVRGVRRILPHGPAGDAVH
gi|330915|gb|AAA46091.1|          SPAPATPAQPSSGDPGPAQLRRPRPSPAPATPAQ-----PSSGDPGPAQL
                                  :************************* ** *..:      . * .* *  

gi|M86664|EHV1|121246-121944      QPPHPVPDPLAPGGGPVPTLQPAHRRRARAREAP
gi|M86664|EHV1|complem            QPPHPVPDPLAPGGGPVPTLQPAHRRRARAREAP
gi|330915|gb|AAA46091.1|          RRPRPSPAPATPAQPSSGDPGPAQLRRPRPSPAP
                                  : *:* * * :*.  .     **: **.*.  **
(
gi|M86664|EHV1|121246-121944:0.00000,
gi|M86664|EHV1|complem:0.00000,
gi|330915|gb|AAA46091.1|:0.45570);