Sequence type explicitly set to Protein
Sequence format is Pearson
Sequence 1: gi|M86664|EHV1|113956-116160        523 aa
Sequence 2: gi|M86664|EHV1|complem              523 aa
Sequence 3: gi|465445|sp|P33485|VNUA_PRVKA      500 aa
Sequence 4: gi|93144|pir||B40505                502 aa
Start of Pairwise alignments
Aligning...
Sequences (3:4) Aligned. Score:  95
Sequences (2:3) Aligned. Score:  45
Sequences (1:2) Aligned. Score:  100
Sequences (2:4) Aligned. Score:  45
Sequences (1:3) Aligned. Score:  45
Sequences (1:4) Aligned. Score:  45
Guide tree        file created:   [clustalw.dnd]
Start of Multiple Alignment
There are 3 groups
Aligning...
Group 1: Sequences:   2      Score:7890
Group 2: Sequences:   2      Score:8624
Group 3: Sequences:   4      Score:3473
Alignment Score 10500
CLUSTAL-Alignment file created  [clustalw.aln]
CLUSTAL W (1.81) multiple sequence alignment


gi|465445|sp|P33485|VNUA_PRVKA      RAEGAPRSAEQQVGVAGVLGLLVVRDGLHLDGPERAAGPAVAAADADDLH
gi|93144|pir||B40505                RAEGAPRSAEQQVGVAGVLGLLVVRDGLHLDGPERAAGPAVAAAEADDLH
gi|M86664|EHV1|113956-116160        RPQGGAPSCSGEVRIAPVSSVLVVRHHLDLDG-SAAEGLGHAGARAGVLN
gi|M86664|EHV1|complem              RPQGGAPSCSGEVRIAPVSSVLVVRHHLDLDG-SAAEGLGHAGARAGVLN
                                    *.:*.. *.. :* :* * .:****. *.*** . * * . *.* *. *:

gi|465445|sp|P33485|VNUA_PRVKA      RVPVLAGAGPGARGPRGPVGLHGAPGGGADAGLEGGKVPEHGRRGARGGD
gi|93144|pir||B40505                RGRVLP-VLAGPPGARGPVGLHGAAGGGADAGLEGRKVPAHGRRGARGRE
gi|M86664|EHV1|113956-116160        HQLHIAGPVDLELVVGLRQAQLRGPHVQDRGGARAEPGLPVDPRGSAAGS
gi|M86664|EHV1|complem              HQLHIAGPVDLELVVGLRQAQLRGPHVQDRGGARAEPGLPVDPRGSAAGS
                                    :   :.             .   ..     .* ..      . **: . .

gi|465445|sp|P33485|VNUA_PRVKA      GARGQHQRGGLGVGLQQRRGAEGAQLG-RQALGAAELGEAPAAAGDEDGP
gi|93144|pir||B40505                GARGQHQRGGLGVGLQQRRGAEGAQLG-RQALGAAELGEAPAAAGDEDGP
gi|M86664|EHV1|113956-116160        LGDGQHQGLGLGVGLQQRHPAELAQQLGDQKLRGLHGPSAAPAAGEVHGA
gi|M86664|EHV1|complem              LGDGQHQGLGLGVGLQQRHPAELAQQLGDQKLRGLHGPSAAPAAGEVHGA
                                     . ****  *********: ** **    * * . .  .*..***: .*.

gi|465445|sp|P33485|VNUA_PRVKA      QRGAEPPAVGRAVPEGGARVKVRVPEPERGALAGHVLAAVHGGEHALAVG
gi|93144|pir||B40505                QRGAEPPAVGRAVPEGGARVKVRVPEPERGALAGHVLAAVHGGEHALAVG
gi|M86664|EHV1|113956-116160        QPGPESPSVGRAVALRGALLKVRVVEPEALGLGPHVLAAVVVGQDALAVL
gi|M86664|EHV1|complem              QPGPESPSVGRAVALRGALLKVRVVEPEALGLGPHVLAAVVVGQDALAVL
                                    * *.*.*:*****.  ** :**** ***  .*. ******  *:.**** 

gi|465445|sp|P33485|VNUA_PRVKA      ARRQRDRGPGPGAGAHRVAHVVLAAEAQRLGPGVQAGEGGLHAGEAGRAH
gi|93144|pir||B40505                ARRQRDRGPGPGAGAHRVAHVVLAAEAQRLGPGVQAGEGGLHAGEAGRAH
gi|M86664|EHV1|113956-116160        PRSQGNAGALAGASVHRVGHVGGAAQPQGRRVRVQARERGLGPREQSGPE
gi|M86664|EHV1|complem              PRSQGNAGALAGASVHRVGHVGGAAQPQGRRVRVQARERGLGPREQSGPE
                                    .* * : *. .**..***.**  **:.*     *** * ** . * . ..

gi|465445|sp|P33485|VNUA_PRVKA      DGARVQHGRAELAAPGPAHGALGGRVQADADVDVVVPHGRAVRGPVLDG-
gi|93144|pir||B40505                DGARVQDGRAELAALGPAHGALGGRVQAGADVDVVVPHGRAVRGPVLDG-
gi|M86664|EHV1|113956-116160        EGAGGEDRAAEVALPGPAHGAGDPRSQGGPHVDVVLADRGTVLGPILGGD
gi|M86664|EHV1|complem              EGAGGEDRAAEVALPGPAHGAGDPRSQGGPHVDVVLADRGTVLGPILGGD
                                    :**  :.  **:*  ****** . * *....****:..  :* **:*.* 

gi|465445|sp|P33485|VNUA_PRVKA      -VQHDEPAPRRAEPRAEVLHGAGEAEVPRREQQHPLGVEAADVGAPGPVP
gi|93144|pir||B40505                -VQHDEPAPRRAEPRAEVLDGAGEAEVPRREQQHPLGVEAADVGAPGPVP
gi|M86664|EHV1|113956-116160        RVQHQELAPGGAQAQAEVLDAAGEGQVPGRQQQDPLGVEGRDVRGPGPVA
gi|M86664|EHV1|complem              RVQHQELAPGGAQAQAEVLDAAGEGQVPGRQQQDPLGVEGRDVRGPGPVA
                                     ***:* **  *:.:****..***.:** *:**.*****. ** .****.

gi|465445|sp|P33485|VNUA_PRVKA      GPGVRVRRAEAVGEGGEQRREAAAARVPGRARGALGGLG-----AELLVG
gi|93144|pir||B40505                GPGVRVRRAEAVGEGGEQRREAAAARVPGRARGALGGLG-----AELLVG
gi|M86664|EHV1|113956-116160        GPGVGPLGEDAVPQGRQQRRESPLEVGPEGLAPRAAGAGGRESAQQVLVL
gi|M86664|EHV1|complem              GPGVGPLGEDAVPQGRQQRRESPLEVGPEGLAPRAAGAGGRESAQQVLVL
                                    ****     :** :* :****:.    *       .* *      ::** 

gi|465445|sp|P33485|VNUA_PRVKA      QRVVEHHHAHVLGVGYLPHPGGAAAER----------------GAAARGD
gi|93144|pir||B40505                QRVVEHHHAHVLGVGYLPHPGGAAAERGA-------------RGPAARGD
gi|M86664|EHV1|113956-116160        ERGVEDHHLHVLGVGDLVHPGGPPSQRAAGRQLPEARAVPGRGAAAAGRD
gi|M86664|EHV1|complem              ERGVEDHHLHVLGVGDLVHPGGPPSQRAAGRQLPEARAVPGRGAAAAGRD
                                    :* **.** ****** * ****..::*                ..**  *

gi|465445|sp|P33485|VNUA_PRVKA      VRQGGRVEGERRAPEFGEDLLVHEGAGHLGRAVGGEGRLGGPRRVGLAGR
gi|93144|pir||B40505                VRQGGRVEGERRAPEFGEDLLVHEGAGHLGRAVGGEGRGGGPRRVGLAGR
gi|M86664|EHV1|113956-116160        GGQGLGIEGERRAPGLGEQLVVDELRHQLGGTVGRASRVAGPRSVAVSAG
gi|M86664|EHV1|complem              GGQGLGIEGERRAPGLGEQLVVDELRHQLGGTVGRASRVAGPRSVAVSAG
                                      **  :******* :**:*:*.*   :** :**  .* .*** *.::. 

gi|465445|sp|P33485|VNUA_PRVKA      DAAEAAVGRGVLGHGPERAPEPVV
gi|93144|pir||B40505                DAAEAAVGRGVLGHGPERAPEPVV
gi|M86664|EHV1|113956-116160        NAPESAPTVGALGWHGSQGPGSLV
gi|M86664|EHV1|complem              NAPESAPTVGALGWHGSQGPGSLV
                                    :*.*:*   *.**   .:.* .:*

(
(
gi|M86664|EHV1|113956-116160:0.00000,
gi|M86664|EHV1|complem:0.00000)
:0.52690,
gi|465445|sp|P33485|VNUA_PRVKA:0.02110,
gi|93144|pir||B40505:0.02090);