BLASTP 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. RID: 1047313323-016546-31189 Query= (750 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 1,363,684 sequences; 436,601,001 total letters Score E Sequences producing significant alignments: (bits) Value gi|5052951|gb|AAD38785.1|AF149422_2 unknown [Homo sapiens] 535 e-151 gi|106322|pir||B34087 hypothetical protein (L1H 3' region) - human 535 e-151 gi|17980447|gb|AAL50637.1| unknown [Homo sapiens] 535 e-150 gi|5070622|gb|AAD39215.1|AF148856_2 unknown [Homo sapiens] 534 e-150 gi|339777|gb|AAB59368.1| ORF2 contains a reverse transcriptase d... 533 e-150 gi|2072958|gb|AAC51267.1| putative p150 [Homo sapiens] 533 e-150 gi|2072977|gb|AAC51279.1| putative p150 [Homo sapiens] 533 e-150 gi|2072972|gb|AAC51276.1| putative p150 [Homo sapiens] 532 e-150 gi|2072953|gb|AAC51264.1| putative p150 [Homo sapiens] 532 e-150 gi|2072948|gb|AAC51261.1| putative p150 [Homo sapiens] 532 e-149 gi|2072964|gb|AAC51271.1| putative p150 [Homo sapiens] 531 e-149 gi|1196432|gb|AAA88037.1| unknown protein 531 e-149 gi|2136112|pir||S65824 reverse transcriptase homolog - human tra... 530 e-149 gi|2072961|gb|AAC51269.1| putative p150 [Homo sapiens] 530 e-149 gi|2120083|pir||I38588 reverse transcriptase homolog - human ret... 530 e-149 gi|11037117|gb|AAG27485.1|AF194537_1 NAG13 [Homo sapiens] 524 e-147 gi|2072951|gb|AAC51263.1| putative p150 [Homo sapiens] 523 e-147 gi|225047|prf||1207289A reverse transcriptase related protein 521 e-146 gi|2072967|gb|AAC51273.1| putative p150 [Homo sapiens] 521 e-146 gi|106903|pir||B28096 line-1 protein ORF2 - human 517 e-145 gi|126295|sp|P08547|LIN1_HUMAN LINE-1 REVERSE TRANSCRIPTASE HOMOLOG 513 e-144 gi|21756813|dbj|BAC04963.1| unnamed protein product [Homo sapiens] 482 e-135 gi|25031497|ref|XP_207552.1| similar to Retrovirus-related POL p... 433 e-120 gi|25031585|ref|XP_207560.1| similar to Retrovirus-related POL p... 432 e-120 gi|25020144|ref|XP_207791.1| similar to ORF2 [Mus musculus domes... 431 e-119 gi|126296|sp|P08548|LIN1_NYCCO LINE-1 REVERSE TRANSCRIPTASE HOMO... 429 e-118 gi|25020138|ref|XP_207789.1| similar to Retrovirus-related POL p... 426 e-118 gi|25024570|ref|XP_207164.1| similar to Retrovirus-related POL p... 426 e-118 gi|25032539|ref|XP_207401.1| similar to Retrovirus-related POL p... 426 e-118 gi|7429144|pir||GNMSLL retrovirus-related reverse transcriptase ... 425 e-117 gi|558908|gb|AAA67727.1| reverse transcriptase 425 e-117 gi|16508047|gb|AAL17972.1| pORF2 [Mus musculus domesticus] 425 e-117 gi|28545301|ref|XP_204245.2| similar to Retrovirus-related POL p... 425 e-117 gi|25030042|ref|XP_207307.1| similar to Retrovirus-related POL p... 425 e-117 gi|25020962|ref|XP_207793.1| similar to Retrovirus-related POL p... 425 e-117 gi|25021569|ref|XP_207624.1| similar to Retrovirus-related POL p... 425 e-117 gi|130402|sp|P11369|POL2_MOUSE Retrovirus-related POL polyprotei... 424 e-117 gi|25021577|ref|XP_207628.1| similar to Retrovirus-related POL p... 424 e-117 gi|198646|gb|AAA39398.1| ORF2; 5' end undetermined 424 e-117 gi|28530221|ref|XP_289916.1| similar to Retrovirus-related POL p... 424 e-117 gi|25024189|ref|XP_204250.1| similar to Retrovirus-related POL p... 424 e-117 gi|28476876|ref|XP_204457.2| similar to Retrovirus-related POL p... 424 e-117 gi|16508044|gb|AAL17970.1| pORF2 [Mus musculus domesticus] 423 e-117 gi|25046838|ref|XP_207501.1| similar to Retrovirus-related POL p... 423 e-117 gi|3599339|gb|AAC72805.1| ORF2 [Mus musculus domesticus] 422 e-117 gi|25029893|ref|XP_207243.1| similar to ORF2 [Mus musculus domes... 422 e-117 gi|25019768|ref|XP_203729.1| similar to ORF2 [Mus musculus domes... 422 e-117 gi|3599326|gb|AAC72797.1| ORF2 [Mus musculus domesticus] 422 e-117 gi|25029572|ref|XP_203692.1| similar to ORF2 [Mus musculus domes... 422 e-117 gi|2731767|gb|AAC53542.1| endonuclease/reverse transcriptase [Mu... 422 e-117 gi|25046842|ref|XP_207122.1| similar to ORF2 [Mus musculus domes... 422 e-117 gi|3599320|gb|AAC72793.1| ORF2 [Mus musculus domesticus] >gi|359... 422 e-117 gi|25020983|ref|XP_207799.1| similar to ORF2 [Mus musculus domes... 422 e-117 gi|3599329|gb|AAC72799.1| ORF2 [Mus musculus domesticus] 422 e-117 gi|25032555|ref|XP_207412.1| similar to Retrovirus-related POL p... 422 e-117 gi|2193870|dbj|BAA20419.1| reverse transcriptase [Mus musculus] 422 e-116 gi|3599342|gb|AAC72807.1| ORF2 [Mus musculus domesticus] 422 e-116 gi|28546024|ref|XP_204305.2| similar to Retrovirus-related POL p... 421 e-116 gi|25024157|ref|XP_204247.1| similar to ORF2 [Mus musculus domes... 421 e-116 gi|25029827|ref|XP_207226.1| similar to ORF2 [Mus musculus domes... 421 e-116 gi|3599336|gb|AAC72803.1| ORF2 [Mus musculus domesticus] 421 e-116 gi|25029610|ref|XP_203698.1| similar to Retrovirus-related POL p... 421 e-116 gi|25022040|ref|XP_204233.1| similar to ORF2 [Mus musculus domes... 421 e-116 gi|28500476|ref|XP_282941.1| similar to ORF2 [Mus musculus domes... 421 e-116 gi|25030529|ref|XP_207543.1| similar to ORF2 [Mus musculus domes... 420 e-116 gi|28476889|ref|XP_289927.1| similar to ORF2 [Mus musculus domes... 420 e-116 gi|25025284|ref|XP_204806.1| similar to ORF2 [Mus musculus domes... 420 e-116 gi|25030039|ref|XP_207306.1| similar to Retrovirus-related POL p... 420 e-116 gi|3599347|gb|AAC72810.1| ORF2 [Mus musculus domesticus] 419 e-116 gi|111814|pir||S21347 hypothetical protein 3 - rat >gi|56589|emb... 419 e-116 gi|6518164|dbj|BAA87885.1| ORF2 [Mus musculus] 419 e-116 gi|25046927|ref|XP_207514.1| similar to ORF2 [Mus musculus domes... 419 e-115 gi|25029884|ref|XP_207241.1| similar to ORF2 [Mus musculus domes... 419 e-115 gi|25019813|ref|XP_203730.1| similar to ORF2 [Mus musculus domes... 418 e-115 gi|25030122|ref|XP_207332.1| similar to endonuclease/reverse tra... 418 e-115 gi|28511418|ref|XP_289872.1| similar to ORF2 [Mus musculus domes... 417 e-115 gi|25030096|ref|XP_207331.1| similar to endonuclease/reverse tra... 417 e-115 gi|25029811|ref|XP_207217.1| similar to ORF2 [Mus musculus domes... 416 e-115 gi|25046858|ref|XP_207507.1| similar to ORF2 [Mus musculus domes... 416 e-115 gi|2981631|dbj|BAA25253.1| ORF2 [Canis familiaris] 415 e-114 gi|25029956|ref|XP_207267.1| similar to Retrovirus-related POL p... 415 e-114 gi|25020175|ref|XP_207811.1| similar to Retrovirus-related POL p... 414 e-114 gi|1791243|gb|AAB41224.1| ORF2 consensus sequence encoding endon... 413 e-114 gi|28522715|ref|XP_284181.1| similar to pORF2 [Mus musculus dome... 413 e-114 gi|23485049|gb|EAA20175.1| Reverse transcriptase, putative [Plas... 412 e-114 gi|25029831|ref|XP_207228.1| similar to Retrovirus-related POL p... 412 e-114 gi|25030050|ref|XP_207312.1| similar to Retrovirus-related POL p... 410 e-113 gi|25030090|ref|XP_207327.1| similar to Retrovirus-related POL p... 410 e-113 gi|25032607|ref|XP_207438.1| similar to Retrovirus-related POL p... 409 e-113 gi|25029975|ref|XP_207279.1| similar to Retrovirus-related POL p... 409 e-113 gi|112261|pir||S16783 probable RNA-directed DNA polymerase (EC 2... 409 e-113 gi|25029868|ref|XP_207234.1| similar to Retrovirus-related POL p... 405 e-111 gi|25026375|ref|XP_204685.1| similar to pORF2 [Mus musculus dome... 401 e-110 gi|25026508|ref|XP_207203.1| similar to Retrovirus-related POL p... 400 e-110 gi|25029858|ref|XP_207336.1| similar to ORF2 [Mus musculus domes... 394 e-108 gi|25019785|ref|XP_207145.1| similar to ORF2 [Mus musculus domes... 394 e-108 gi|25020235|ref|XP_207823.1| similar to pORF2 [Mus musculus dome... 390 e-107 gi|25021561|ref|XP_207620.1| similar to pORF2 [Mus musculus dome... 390 e-107 gi|25029913|ref|XP_207252.1| similar to pORF2 [Mus musculus dome... 389 e-106 gi|25021456|ref|XP_207950.1| similar to pORF2 [Mus musculus dome... 388 e-106 ALIGNMENTS >gi|5052951|gb|AAD38785.1|AF149422_2 unknown [Homo sapiens] Length = 1275 Score = 535 bits (1379), Expect = e-151 Identities = 269/281 (95%), Positives = 274/281 (97%) Query: 459 EIQPTIREYYQHLYANKLENLEEMDKFLNTYTLPRLNQEEVESLNRPVTGSEIVAIINSL 518 EIQ TIREYY+HLYANKLENLEEMD FL+TYTLPRLNQEEVESLNRP+TGSEIVAIINSL Sbjct: 406 EIQTTIREYYKHLYANKLENLEEMDTFLDTYTLPRLNQEEVESLNRPITGSEIVAIINSL 465 Query: 519 PTKKSPGPDGFTAEFYQRYKEELVPFLLKLFQSIENEGILPNLFYEASIILIPKPGRDTT 578 PTKKSPGPDGFTAEFYQRYKEELVPFLLKLFQSIE EGILPN FYEASIILIPKPGRDTT Sbjct: 466 PTKKSPGPDGFTAEFYQRYKEELVPFLLKLFQSIEKEGILPNSFYEASIILIPKPGRDTT 525 Query: 579 KKENFRPISLMNIDAKILNKILANRIQQHIKKLIHHDQVGFIPGMQGWFNIRKSINVIQH 638 KKENFRPISLMNIDAKILNKILANRIQQHIKKLIHHDQVGFIPGMQGWFNIRKSINVIQH Sbjct: 526 KKENFRPISLMNIDAKILNKILANRIQQHIKKLIHHDQVGFIPGMQGWFNIRKSINVIQH 585 Query: 639 INRTKDKNHMIISIDAEKAFDKIQQRFMLKTLNKLGIDGTYLQIIRAIYDKPTANIILNG 698 INR KDKNHMIISIDAEKAFDKIQQ FMLKTLNKLGIDGTY +IIRAIYDKPTANIILNG Sbjct: 586 INRAKDKNHMIISIDAEKAFDKIQQPFMLKTLNKLGIDGTYFKIIRAIYDKPTANIILNG 645 Query: 699 QKLEAFPLKTGTRQGCPLSPLLFNIVLEVLARAIRQEKEIE 739 QKLEAFPLKTGTRQGCPLSPLLFNIVLEVLARAIRQEKEI+ Sbjct: 646 QKLEAFPLKTGTRQGCPLSPLLFNIVLEVLARAIRQEKEIK 686 >gi|106322|pir||B34087 hypothetical protein (L1H 3' region) - human Length = 1280 Score = 535 bits (1379), Expect = e-151 Identities = 270/281 (96%), Positives = 276/281 (98%) Query: 459 EIQPTIREYYQHLYANKLENLEEMDKFLNTYTLPRLNQEEVESLNRPVTGSEIVAIINSL 518 EIQ TIREYY+HLYANKLENLEEMDKFL+TYTLPRLNQEEVESLNRP+TGSEI AIINSL Sbjct: 411 EIQTTIREYYKHLYANKLENLEEMDKFLDTYTLPRLNQEEVESLNRPITGSEIEAIINSL 470 Query: 519 PTKKSPGPDGFTAEFYQRYKEELVPFLLKLFQSIENEGILPNLFYEASIILIPKPGRDTT 578 PTKKSPGPDGFTAEFYQRYKEELVPFLLKLFQSIE EGILPN FYEASIILIPKPGRDTT Sbjct: 471 PTKKSPGPDGFTAEFYQRYKEELVPFLLKLFQSIEKEGILPNSFYEASIILIPKPGRDTT 530 Query: 579 KKENFRPISLMNIDAKILNKILANRIQQHIKKLIHHDQVGFIPGMQGWFNIRKSINVIQH 638 KKENFRPISLMNIDAKILNKILAN+IQQHIKKLIHHDQVGFIPGMQGWFNIRKSINVIQH Sbjct: 531 KKENFRPISLMNIDAKILNKILANQIQQHIKKLIHHDQVGFIPGMQGWFNIRKSINVIQH 590 Query: 639 INRTKDKNHMIISIDAEKAFDKIQQRFMLKTLNKLGIDGTYLQIIRAIYDKPTANIILNG 698 INRTKDKNHMIISIDAEKAFDKIQQ FMLKTLNKLGIDGTYL+IIRAIYDKPTANIILNG Sbjct: 591 INRTKDKNHMIISIDAEKAFDKIQQPFMLKTLNKLGIDGTYLKIIRAIYDKPTANIILNG 650 Query: 699 QKLEAFPLKTGTRQGCPLSPLLFNIVLEVLARAIRQEKEIE 739 QKLEAFPLKTGTRQGCPLSPLLFNIVLEVLARAIRQEKEI+ Sbjct: 651 QKLEAFPLKTGTRQGCPLSPLLFNIVLEVLARAIRQEKEIK 691 >gi|17980447|gb|AAL50637.1| unknown [Homo sapiens] Length = 1275 Score = 535 bits (1377), Expect = e-150 Identities = 269/281 (95%), Positives = 274/281 (97%) Query: 459 EIQPTIREYYQHLYANKLENLEEMDKFLNTYTLPRLNQEEVESLNRPVTGSEIVAIINSL 518 EIQ TIREYY+HLYANKLENLEEMD FL+TYTLPRLNQEEVESLNRP+TGSEIVAIINSL Sbjct: 406 EIQTTIREYYKHLYANKLENLEEMDTFLDTYTLPRLNQEEVESLNRPITGSEIVAIINSL 465 Query: 519 PTKKSPGPDGFTAEFYQRYKEELVPFLLKLFQSIENEGILPNLFYEASIILIPKPGRDTT 578 PTKKSPGPDGFTAEFYQRYKEELVPFLLKLFQSIE EGILPN FYEASIILIPKPGRDTT Sbjct: 466 PTKKSPGPDGFTAEFYQRYKEELVPFLLKLFQSIEKEGILPNSFYEASIILIPKPGRDTT 525 Query: 579 KKENFRPISLMNIDAKILNKILANRIQQHIKKLIHHDQVGFIPGMQGWFNIRKSINVIQH 638 KKENFRPISLMNIDAKILNKILANRIQQHIKKLIHHDQVGFIPGMQGWFNIRKSINVIQH Sbjct: 526 KKENFRPISLMNIDAKILNKILANRIQQHIKKLIHHDQVGFIPGMQGWFNIRKSINVIQH 585 Query: 639 INRTKDKNHMIISIDAEKAFDKIQQRFMLKTLNKLGIDGTYLQIIRAIYDKPTANIILNG 698 INR KDKNHMIISIDAEKAFDKIQQ FMLKTLNKLGIDGTY +IIRAIYDKPTANIILNG Sbjct: 586 INRAKDKNHMIISIDAEKAFDKIQQPFMLKTLNKLGIDGTYFKIIRAIYDKPTANIILNG 645 Query: 699 QKLEAFPLKTGTRQGCPLSPLLFNIVLEVLARAIRQEKEIE 739 QKLEAFPLKTGTRQGCPLSPLLFNIVLEVLARAIRQEKEI+ Sbjct: 646 QKLEAFPLKTGTRQGCPLSPLLFNIVLEVLARAIRQEKEIK 686 >gi|5070622|gb|AAD39215.1|AF148856_2 unknown [Homo sapiens] Length = 1275 Score = 534 bits (1376), Expect = e-150 Identities = 269/281 (95%), Positives = 274/281 (97%) Query: 459 EIQPTIREYYQHLYANKLENLEEMDKFLNTYTLPRLNQEEVESLNRPVTGSEIVAIINSL 518 EIQ TIREYY+HLYANKLENLEEMD FL+TYTLPRLNQEEVESLNRP+TGSEIVAIINSL Sbjct: 406 EIQTTIREYYKHLYANKLENLEEMDTFLDTYTLPRLNQEEVESLNRPITGSEIVAIINSL 465 Query: 519 PTKKSPGPDGFTAEFYQRYKEELVPFLLKLFQSIENEGILPNLFYEASIILIPKPGRDTT 578 PTKKSPGPDGFTAEFYQRYKEELVPFLLKLFQSIE EGILPN FYEASIILIPKPGRDTT Sbjct: 466 PTKKSPGPDGFTAEFYQRYKEELVPFLLKLFQSIEKEGILPNSFYEASIILIPKPGRDTT 525 Query: 579 KKENFRPISLMNIDAKILNKILANRIQQHIKKLIHHDQVGFIPGMQGWFNIRKSINVIQH 638 KKENFRPISLMNIDAKILNKILANRIQQHIKKLIHHDQVGFIPGMQGWFNIRKSINVIQH Sbjct: 526 KKENFRPISLMNIDAKILNKILANRIQQHIKKLIHHDQVGFIPGMQGWFNIRKSINVIQH 585 Query: 639 INRTKDKNHMIISIDAEKAFDKIQQRFMLKTLNKLGIDGTYLQIIRAIYDKPTANIILNG 698 INR KDKNHMIISIDAEKAFDKIQQ FMLKTLNKLGIDGTY +IIRAIYDKPTANIILNG Sbjct: 586 INRAKDKNHMIISIDAEKAFDKIQQPFMLKTLNKLGIDGTYFKIIRAIYDKPTANIILNG 645 Query: 699 QKLEAFPLKTGTRQGCPLSPLLFNIVLEVLARAIRQEKEIE 739 QKLEAFPLKTGTRQGCPLSPLLFNIVLEVLARAIRQEKEI+ Sbjct: 646 QKLEAFPLKTGTRQGCPLSPLLFNIVLEVLARAIRQEKEIK 686 >gi|339777|gb|AAB59368.1| ORF2 contains a reverse transcriptase domain. [Homo sapiens] Length = 1275 Score = 533 bits (1373), Expect = e-150 Identities = 268/281 (95%), Positives = 273/281 (97%) Query: 459 EIQPTIREYYQHLYANKLENLEEMDKFLNTYTLPRLNQEEVESLNRPVTGSEIVAIINSL 518 EIQ TIREYY+HLYANKLENLEEMD FL+TYTLPRLNQEEVESLNRP+TGSEIVAIINSL Sbjct: 406 EIQTTIREYYKHLYANKLENLEEMDTFLDTYTLPRLNQEEVESLNRPITGSEIVAIINSL 465 Query: 519 PTKKSPGPDGFTAEFYQRYKEELVPFLLKLFQSIENEGILPNLFYEASIILIPKPGRDTT 578 PTKKSPGPDGFTAEFYQRY EELVPFLLKLFQSIE EGILPN FYEASIILIPKPGRDTT Sbjct: 466 PTKKSPGPDGFTAEFYQRYMEELVPFLLKLFQSIEKEGILPNSFYEASIILIPKPGRDTT 525 Query: 579 KKENFRPISLMNIDAKILNKILANRIQQHIKKLIHHDQVGFIPGMQGWFNIRKSINVIQH 638 KKENFRPISLMNIDAKILNKILANRIQQHIKKLIHHDQVGFIPGMQGWFNIRKSINVIQH Sbjct: 526 KKENFRPISLMNIDAKILNKILANRIQQHIKKLIHHDQVGFIPGMQGWFNIRKSINVIQH 585 Query: 639 INRTKDKNHMIISIDAEKAFDKIQQRFMLKTLNKLGIDGTYLQIIRAIYDKPTANIILNG 698 INR KDKNHMIISIDAEKAFDKIQQ FMLKTLNKLGIDGTY +IIRAIYDKPTANIILNG Sbjct: 586 INRAKDKNHMIISIDAEKAFDKIQQPFMLKTLNKLGIDGTYFKIIRAIYDKPTANIILNG 645 Query: 699 QKLEAFPLKTGTRQGCPLSPLLFNIVLEVLARAIRQEKEIE 739 QKLEAFPLKTGTRQGCPLSPLLFNIVLEVLARAIRQEKEI+ Sbjct: 646 QKLEAFPLKTGTRQGCPLSPLLFNIVLEVLARAIRQEKEIK 686 >gi|2072958|gb|AAC51267.1| putative p150 [Homo sapiens] Length = 1275 Score = 533 bits (1373), Expect = e-150 Identities = 268/281 (95%), Positives = 273/281 (97%) Query: 459 EIQPTIREYYQHLYANKLENLEEMDKFLNTYTLPRLNQEEVESLNRPVTGSEIVAIINSL 518 EIQ TIREYY+HLYANKLENLEEMD FL+TYTLPRLNQEEVESLNRP+TGSEIVAIINSL Sbjct: 406 EIQTTIREYYKHLYANKLENLEEMDTFLDTYTLPRLNQEEVESLNRPITGSEIVAIINSL 465 Query: 519 PTKKSPGPDGFTAEFYQRYKEELVPFLLKLFQSIENEGILPNLFYEASIILIPKPGRDTT 578 PTKKSPGPDGFT EFYQRYKEELVPFLLKLFQSIE EGILPN FYEASIILIPKPGRDTT Sbjct: 466 PTKKSPGPDGFTDEFYQRYKEELVPFLLKLFQSIEKEGILPNSFYEASIILIPKPGRDTT 525 Query: 579 KKENFRPISLMNIDAKILNKILANRIQQHIKKLIHHDQVGFIPGMQGWFNIRKSINVIQH 638 KKENFRPISLMNIDAKILNKILANRIQQHIKKLIHHDQVGFIPGMQGWFNIRKSINVIQH Sbjct: 526 KKENFRPISLMNIDAKILNKILANRIQQHIKKLIHHDQVGFIPGMQGWFNIRKSINVIQH 585 Query: 639 INRTKDKNHMIISIDAEKAFDKIQQRFMLKTLNKLGIDGTYLQIIRAIYDKPTANIILNG 698 INR KDKNHMIISIDAEKAFDKIQQ FMLKTLNKLGIDGTY +IIRAIYDKPTANIILNG Sbjct: 586 INRAKDKNHMIISIDAEKAFDKIQQPFMLKTLNKLGIDGTYFKIIRAIYDKPTANIILNG 645 Query: 699 QKLEAFPLKTGTRQGCPLSPLLFNIVLEVLARAIRQEKEIE 739 QKLEAFPLKTGTRQGCPLSPLLFNIVLEVLARAIRQEKEI+ Sbjct: 646 QKLEAFPLKTGTRQGCPLSPLLFNIVLEVLARAIRQEKEIK 686 >gi|2072977|gb|AAC51279.1| putative p150 [Homo sapiens] Length = 1275 Score = 533 bits (1373), Expect = e-150 Identities = 268/281 (95%), Positives = 272/281 (96%) Query: 459 EIQPTIREYYQHLYANKLENLEEMDKFLNTYTLPRLNQEEVESLNRPVTGSEIVAIINSL 518 EIQ TIREYY+HLYANKLENLEEMD FLNTYTLP LNQEEVESLNRP+TGSEIVAIINSL Sbjct: 406 EIQTTIREYYKHLYANKLENLEEMDTFLNTYTLPTLNQEEVESLNRPITGSEIVAIINSL 465 Query: 519 PTKKSPGPDGFTAEFYQRYKEELVPFLLKLFQSIENEGILPNLFYEASIILIPKPGRDTT 578 PTKKSPGPDGFTAEFYQRYKEELVPFLLKLFQS E EGILPN FYEASIILIPKPGRDTT Sbjct: 466 PTKKSPGPDGFTAEFYQRYKEELVPFLLKLFQSTEKEGILPNSFYEASIILIPKPGRDTT 525 Query: 579 KKENFRPISLMNIDAKILNKILANRIQQHIKKLIHHDQVGFIPGMQGWFNIRKSINVIQH 638 KKENFRPISLMNIDAKILNKILANRIQQHIKKLIHHDQVGFIPGMQGWFNIRKSINVIQH Sbjct: 526 KKENFRPISLMNIDAKILNKILANRIQQHIKKLIHHDQVGFIPGMQGWFNIRKSINVIQH 585 Query: 639 INRTKDKNHMIISIDAEKAFDKIQQRFMLKTLNKLGIDGTYLQIIRAIYDKPTANIILNG 698 INR KDKNHMIISIDAEKAFDKIQQ FMLKTLNKLGIDGTY +IIRAIYDKPTANIILNG Sbjct: 586 INRAKDKNHMIISIDAEKAFDKIQQPFMLKTLNKLGIDGTYFKIIRAIYDKPTANIILNG 645 Query: 699 QKLEAFPLKTGTRQGCPLSPLLFNIVLEVLARAIRQEKEIE 739 QKLEAFPLKTGTRQGCPLSPLLFNIVLEVLARAIRQEKEI+ Sbjct: 646 QKLEAFPLKTGTRQGCPLSPLLFNIVLEVLARAIRQEKEIK 686 >gi|2072972|gb|AAC51276.1| putative p150 [Homo sapiens] Length = 1275 Score = 532 bits (1371), Expect = e-150 Identities = 268/281 (95%), Positives = 273/281 (97%) Query: 459 EIQPTIREYYQHLYANKLENLEEMDKFLNTYTLPRLNQEEVESLNRPVTGSEIVAIINSL 518 EIQ TIREYY+HLYANKLENLEEMD FL+TYTLPRLNQEEVESLNRP+TGSEIVAIINSL Sbjct: 406 EIQTTIREYYKHLYANKLENLEEMDTFLDTYTLPRLNQEEVESLNRPITGSEIVAIINSL 465 Query: 519 PTKKSPGPDGFTAEFYQRYKEELVPFLLKLFQSIENEGILPNLFYEASIILIPKPGRDTT 578 PTKKSPGPDGFTAEFYQRYKEELVPFLLKLFQSIE EGILPN FYEASIILIPKPGRDTT Sbjct: 466 PTKKSPGPDGFTAEFYQRYKEELVPFLLKLFQSIEKEGILPNSFYEASIILIPKPGRDTT 525 Query: 579 KKENFRPISLMNIDAKILNKILANRIQQHIKKLIHHDQVGFIPGMQGWFNIRKSINVIQH 638 KKENFRPISLMNIDAKILNKILANRIQQHIKKLIHHDQVGFIPGMQGWFNI KSINVIQH Sbjct: 526 KKENFRPISLMNIDAKILNKILANRIQQHIKKLIHHDQVGFIPGMQGWFNIHKSINVIQH 585 Query: 639 INRTKDKNHMIISIDAEKAFDKIQQRFMLKTLNKLGIDGTYLQIIRAIYDKPTANIILNG 698 INR KDKNHMIISIDAEKAFDKIQQ FMLKTLNKLGIDGTY +IIRAIYDKPTANIILNG Sbjct: 586 INRAKDKNHMIISIDAEKAFDKIQQPFMLKTLNKLGIDGTYFKIIRAIYDKPTANIILNG 645 Query: 699 QKLEAFPLKTGTRQGCPLSPLLFNIVLEVLARAIRQEKEIE 739 QKLEAFPLKTGTRQGCPLSPLLFNIVLEVLARAIRQEKEI+ Sbjct: 646 QKLEAFPLKTGTRQGCPLSPLLFNIVLEVLARAIRQEKEIK 686 >gi|2072953|gb|AAC51264.1| putative p150 [Homo sapiens] Length = 1275 Score = 532 bits (1370), Expect = e-150 Identities = 267/280 (95%), Positives = 272/280 (97%) Query: 460 IQPTIREYYQHLYANKLENLEEMDKFLNTYTLPRLNQEEVESLNRPVTGSEIVAIINSLP 519 IQ TIREYY+HLYANKLENLEEMD FL+TYTLPRLNQEEVESLNRP+TGSEIVAIINSLP Sbjct: 407 IQTTIREYYKHLYANKLENLEEMDTFLDTYTLPRLNQEEVESLNRPITGSEIVAIINSLP 466 Query: 520 TKKSPGPDGFTAEFYQRYKEELVPFLLKLFQSIENEGILPNLFYEASIILIPKPGRDTTK 579 TKKSPGPDGFTAEFYQRYKEELVPFLLKLFQSIE EGILPN FYEASIILIPKPGRDTTK Sbjct: 467 TKKSPGPDGFTAEFYQRYKEELVPFLLKLFQSIEKEGILPNSFYEASIILIPKPGRDTTK 526 Query: 580 KENFRPISLMNIDAKILNKILANRIQQHIKKLIHHDQVGFIPGMQGWFNIRKSINVIQHI 639 KENFRPISLMNIDAKILNKILANRIQQHIKKLIHHDQVGFIPGMQGWFNIRKSINVIQHI Sbjct: 527 KENFRPISLMNIDAKILNKILANRIQQHIKKLIHHDQVGFIPGMQGWFNIRKSINVIQHI 586 Query: 640 NRTKDKNHMIISIDAEKAFDKIQQRFMLKTLNKLGIDGTYLQIIRAIYDKPTANIILNGQ 699 NR KDKNHMIISIDAEKAFDKIQQ FMLKTLNKLGIDG Y +IIRAIYDKPTANIILNGQ Sbjct: 587 NRAKDKNHMIISIDAEKAFDKIQQPFMLKTLNKLGIDGMYFKIIRAIYDKPTANIILNGQ 646 Query: 700 KLEAFPLKTGTRQGCPLSPLLFNIVLEVLARAIRQEKEIE 739 KLEAFPLKTGTRQGCPLSPLLFNIVLEVLARAIRQEKEI+ Sbjct: 647 KLEAFPLKTGTRQGCPLSPLLFNIVLEVLARAIRQEKEIK 686 >gi|2072948|gb|AAC51261.1| putative p150 [Homo sapiens] Length = 1275 Score = 532 bits (1370), Expect = e-149 Identities = 268/281 (95%), Positives = 273/281 (97%) Query: 459 EIQPTIREYYQHLYANKLENLEEMDKFLNTYTLPRLNQEEVESLNRPVTGSEIVAIINSL 518 EIQ TIREYY+HLYANKLENLEEMD FL+TYTLPRLNQEEVESLNRP+TGSEIVAIINSL Sbjct: 406 EIQTTIREYYKHLYANKLENLEEMDTFLDTYTLPRLNQEEVESLNRPITGSEIVAIINSL 465 Query: 519 PTKKSPGPDGFTAEFYQRYKEELVPFLLKLFQSIENEGILPNLFYEASIILIPKPGRDTT 578 PTKKSPGPDGFTAEFYQRYKEELVPFLLKLFQSIE EGILPN FYEASIILIPKPGRDTT Sbjct: 466 PTKKSPGPDGFTAEFYQRYKEELVPFLLKLFQSIEKEGILPNSFYEASIILIPKPGRDTT 525 Query: 579 KKENFRPISLMNIDAKILNKILANRIQQHIKKLIHHDQVGFIPGMQGWFNIRKSINVIQH 638 KKENFRPISLMNIDAKILNKILANRIQQHIKKLIHHDQVGFIPGMQGWFNIRKSINVIQH Sbjct: 526 KKENFRPISLMNIDAKILNKILANRIQQHIKKLIHHDQVGFIPGMQGWFNIRKSINVIQH 585 Query: 639 INRTKDKNHMIISIDAEKAFDKIQQRFMLKTLNKLGIDGTYLQIIRAIYDKPTANIILNG 698 INR KDKNHMIISIDAEKAFDKIQQ FMLKTLNKLGIDGTY +IIRAIYDKPTANI LNG Sbjct: 586 INRAKDKNHMIISIDAEKAFDKIQQPFMLKTLNKLGIDGTYFKIIRAIYDKPTANIRLNG 645 Query: 699 QKLEAFPLKTGTRQGCPLSPLLFNIVLEVLARAIRQEKEIE 739 QKLEAFPLKTGTRQGCPLSPLLFNIVLEVLARAIRQEKEI+ Sbjct: 646 QKLEAFPLKTGTRQGCPLSPLLFNIVLEVLARAIRQEKEIK 686 >gi|2072964|gb|AAC51271.1| putative p150 [Homo sapiens] Length = 1275 Score = 531 bits (1369), Expect = e-149 Identities = 268/281 (95%), Positives = 274/281 (97%) Query: 459 EIQPTIREYYQHLYANKLENLEEMDKFLNTYTLPRLNQEEVESLNRPVTGSEIVAIINSL 518 EIQ TIREYY+HLYANKLENLEEMD FL+TYTLPRLNQEEVESLNRP+TGSEIVAIINSL Sbjct: 406 EIQTTIREYYKHLYANKLENLEEMDTFLDTYTLPRLNQEEVESLNRPITGSEIVAIINSL 465 Query: 519 PTKKSPGPDGFTAEFYQRYKEELVPFLLKLFQSIENEGILPNLFYEASIILIPKPGRDTT 578 PTKKSPGPDGFTAEFYQRYKEELVPFLLKLFQSIE EGILPN FYEASIILIPKPGRDTT Sbjct: 466 PTKKSPGPDGFTAEFYQRYKEELVPFLLKLFQSIEKEGILPNSFYEASIILIPKPGRDTT 525 Query: 579 KKENFRPISLMNIDAKILNKILANRIQQHIKKLIHHDQVGFIPGMQGWFNIRKSINVIQH 638 KKENFRPISLMNIDAKILNKILANRIQQHIKKLIHHDQVGFIPGMQGWFNIRKSINVIQH Sbjct: 526 KKENFRPISLMNIDAKILNKILANRIQQHIKKLIHHDQVGFIPGMQGWFNIRKSINVIQH 585 Query: 639 INRTKDKNHMIISIDAEKAFDKIQQRFMLKTLNKLGIDGTYLQIIRAIYDKPTANIILNG 698 INR KDKNH+IISIDAEKAFDKIQQ FMLKTLNKLGIDG YL+IIRAIYDKPTANIILNG Sbjct: 586 INRAKDKNHVIISIDAEKAFDKIQQPFMLKTLNKLGIDGMYLKIIRAIYDKPTANIILNG 645 Query: 699 QKLEAFPLKTGTRQGCPLSPLLFNIVLEVLARAIRQEKEIE 739 QKLEAFPLKTGTRQGCPLSPLLFNIVLEVLARAIRQEKEI+ Sbjct: 646 QKLEAFPLKTGTRQGCPLSPLLFNIVLEVLARAIRQEKEIK 686 >gi|1196432|gb|AAA88037.1| unknown protein Length = 1192 Score = 531 bits (1369), Expect = e-149 Identities = 268/281 (95%), Positives = 273/281 (97%) Query: 459 EIQPTIREYYQHLYANKLENLEEMDKFLNTYTLPRLNQEEVESLNRPVTGSEIVAIINSL 518 EIQ TIREYY+HLYANKLENLEEMD FL+TYTLPRLNQEEVESLNRP+TGSEIVAIINSL Sbjct: 323 EIQTTIREYYKHLYANKLENLEEMDTFLDTYTLPRLNQEEVESLNRPITGSEIVAIINSL 382 Query: 519 PTKKSPGPDGFTAEFYQRYKEELVPFLLKLFQSIENEGILPNLFYEASIILIPKPGRDTT 578 PTKKSPGPDGFTAEFYQRY EELVPFLLKLFQSIE EGILPN FYEASIILIPKPGRDTT Sbjct: 383 PTKKSPGPDGFTAEFYQRYMEELVPFLLKLFQSIEKEGILPNSFYEASIILIPKPGRDTT 442 Query: 579 KKENFRPISLMNIDAKILNKILANRIQQHIKKLIHHDQVGFIPGMQGWFNIRKSINVIQH 638 KKENFRPISLMNIDAKILNKILANRIQQHIKKLIHHDQVGFIPGMQGWFNIRKSINVIQH Sbjct: 443 KKENFRPISLMNIDAKILNKILANRIQQHIKKLIHHDQVGFIPGMQGWFNIRKSINVIQH 502 Query: 639 INRTKDKNHMIISIDAEKAFDKIQQRFMLKTLNKLGIDGTYLQIIRAIYDKPTANIILNG 698 INR KDKNHMIISIDAEKAFDKIQQ FMLKTLNKLGIDGTY +IIRAIYDKPTANIILNG Sbjct: 503 INRAKDKNHMIISIDAEKAFDKIQQPFMLKTLNKLGIDGTYFKIIRAIYDKPTANIILNG 562 Query: 699 QKLEAFPLKTGTRQGCPLSPLLFNIVLEVLARAIRQEKEIE 739 QKLEAFPLKTGTRQGCPLSPLLFNIVLEVLARAIRQEKEI+ Sbjct: 563 QKLEAFPLKTGTRQGCPLSPLLFNIVLEVLARAIRQEKEIK 603 >gi|2136112|pir||S65824 reverse transcriptase homolog - human transposon L1.1 gi|339771|gb|AAA51622.1| ORF2 [Homo sapiens] Length = 1275 Score = 530 bits (1366), Expect = e-149 Identities = 267/281 (95%), Positives = 272/281 (96%) Query: 459 EIQPTIREYYQHLYANKLENLEEMDKFLNTYTLPRLNQEEVESLNRPVTGSEIVAIINSL 518 EIQ TIREYY+HLYANKLENLEEMD FL+TYTLPRLNQEEVESLNRP+TGSEIVAIINSL Sbjct: 406 EIQTTIREYYKHLYANKLENLEEMDTFLDTYTLPRLNQEEVESLNRPITGSEIVAIINSL 465 Query: 519 PTKKSPGPDGFTAEFYQRYKEELVPFLLKLFQSIENEGILPNLFYEASIILIPKPGRDTT 578 PTKKSPGPDGFTAEFYQRY EELVPFLLKLFQSIE EGILPN FYEASIILIPKPGRDTT Sbjct: 466 PTKKSPGPDGFTAEFYQRYMEELVPFLLKLFQSIEKEGILPNSFYEASIILIPKPGRDTT 525 Query: 579 KKENFRPISLMNIDAKILNKILANRIQQHIKKLIHHDQVGFIPGMQGWFNIRKSINVIQH 638 KKENFRPISLMNIDAKILNKILANRIQQHIKKLIHHDQVGFIPGMQGWFNIRKSINVIQH Sbjct: 526 KKENFRPISLMNIDAKILNKILANRIQQHIKKLIHHDQVGFIPGMQGWFNIRKSINVIQH 585 Query: 639 INRTKDKNHMIISIDAEKAFDKIQQRFMLKTLNKLGIDGTYLQIIRAIYDKPTANIILNG 698 INR DKNHMIISIDAEKAFDKIQQ FMLKTLNKLGIDGTY +IIRAIYDKPTANIILNG Sbjct: 586 INRANDKNHMIISIDAEKAFDKIQQPFMLKTLNKLGIDGTYFKIIRAIYDKPTANIILNG 645 Query: 699 QKLEAFPLKTGTRQGCPLSPLLFNIVLEVLARAIRQEKEIE 739 QKLEAFPLKTGTRQGCPLSPLLFNIVLEVLARAIRQEKEI+ Sbjct: 646 QKLEAFPLKTGTRQGCPLSPLLFNIVLEVLARAIRQEKEIK 686 >gi|2072961|gb|AAC51269.1| putative p150 [Homo sapiens] Length = 1275 Score = 530 bits (1365), Expect = e-149 Identities = 268/281 (95%), Positives = 273/281 (97%) Query: 459 EIQPTIREYYQHLYANKLENLEEMDKFLNTYTLPRLNQEEVESLNRPVTGSEIVAIINSL 518 EIQ TIREYY+HLYANKLENLEEMD FL+TYTLPRLNQEEVESLNR +TGSEIVAIINSL Sbjct: 406 EIQTTIREYYKHLYANKLENLEEMDTFLDTYTLPRLNQEEVESLNRRITGSEIVAIINSL 465 Query: 519 PTKKSPGPDGFTAEFYQRYKEELVPFLLKLFQSIENEGILPNLFYEASIILIPKPGRDTT 578 PTKKSPGPDGFTAEFYQRY EELVPFLLKLFQSIE EGILPN FYEASIILIPKPGRDTT Sbjct: 466 PTKKSPGPDGFTAEFYQRYMEELVPFLLKLFQSIEKEGILPNSFYEASIILIPKPGRDTT 525 Query: 579 KKENFRPISLMNIDAKILNKILANRIQQHIKKLIHHDQVGFIPGMQGWFNIRKSINVIQH 638 KKENFRPISLMNIDAKILNKILANRIQQHIKKLIHHDQVGFIPGMQGWFNIRKSINVIQH Sbjct: 526 KKENFRPISLMNIDAKILNKILANRIQQHIKKLIHHDQVGFIPGMQGWFNIRKSINVIQH 585 Query: 639 INRTKDKNHMIISIDAEKAFDKIQQRFMLKTLNKLGIDGTYLQIIRAIYDKPTANIILNG 698 INRTKDKNHMIISIDAEKAFDKIQQ FMLKTLNKLGIDGTY +IIRAIYDKPTANIILNG Sbjct: 586 INRTKDKNHMIISIDAEKAFDKIQQPFMLKTLNKLGIDGTYFKIIRAIYDKPTANIILNG 645 Query: 699 QKLEAFPLKTGTRQGCPLSPLLFNIVLEVLARAIRQEKEIE 739 QKLEAFPLKTGTRQGCPLSPLLFNIVLEVLARAIRQEKEI+ Sbjct: 646 QKLEAFPLKTGTRQGCPLSPLLFNIVLEVLARAIRQEKEIK 686 >gi|2120083|pir||I38588 reverse transcriptase homolog - human retrotransposon L1 gi|483916|gb|AAB60345.1| ORF2, encodes a reverse transcriptase homolog Length = 1275 Score = 530 bits (1365), Expect = e-149 Identities = 267/281 (95%), Positives = 272/281 (96%) Query: 459 EIQPTIREYYQHLYANKLENLEEMDKFLNTYTLPRLNQEEVESLNRPVTGSEIVAIINSL 518 EIQ TIREYY+HLYANKLENLEEMD FL+TYTLPRL QEEVESLN P+TGSEIVAIINSL Sbjct: 406 EIQTTIREYYKHLYANKLENLEEMDTFLDTYTLPRLKQEEVESLNGPITGSEIVAIINSL 465 Query: 519 PTKKSPGPDGFTAEFYQRYKEELVPFLLKLFQSIENEGILPNLFYEASIILIPKPGRDTT 578 PTKKSPGPDGFTAEFYQRYKEELVPFLLKLFQSIE EGILPN FYEASIILIPKPGRDTT Sbjct: 466 PTKKSPGPDGFTAEFYQRYKEELVPFLLKLFQSIEKEGILPNSFYEASIILIPKPGRDTT 525 Query: 579 KKENFRPISLMNIDAKILNKILANRIQQHIKKLIHHDQVGFIPGMQGWFNIRKSINVIQH 638 KKENFRPISLMNIDAKILNKILANRIQQHIKKLIHHDQVGFIPGMQGWFNIRKSINVIQH Sbjct: 526 KKENFRPISLMNIDAKILNKILANRIQQHIKKLIHHDQVGFIPGMQGWFNIRKSINVIQH 585 Query: 639 INRTKDKNHMIISIDAEKAFDKIQQRFMLKTLNKLGIDGTYLQIIRAIYDKPTANIILNG 698 INR KDKNHMIISIDAEKAFDKIQQ FMLKTLNKLGIDGTY +IIRAIYDKPTANIILNG Sbjct: 586 INRAKDKNHMIISIDAEKAFDKIQQPFMLKTLNKLGIDGTYFKIIRAIYDKPTANIILNG 645 Query: 699 QKLEAFPLKTGTRQGCPLSPLLFNIVLEVLARAIRQEKEIE 739 QKLEAFPLKTGTRQGCPLSPLLFNIVLEVLARAIRQEKEI+ Sbjct: 646 QKLEAFPLKTGTRQGCPLSPLLFNIVLEVLARAIRQEKEIK 686 >gi|11037117|gb|AAG27485.1|AF194537_1 NAG13 [Homo sapiens] Length = 420 Score = 524 bits (1350), Expect = e-147 Identities = 265/281 (94%), Positives = 272/281 (96%) Query: 459 EIQPTIREYYQHLYANKLENLEEMDKFLNTYTLPRLNQEEVESLNRPVTGSEIVAIINSL 518 EIQ TIREYY+HLYANKLENLEEMD FL+TYTLPRLNQEEVESLNRP+TG+EIVAIINSL Sbjct: 55 EIQTTIREYYKHLYANKLENLEEMDTFLDTYTLPRLNQEEVESLNRPITGAEIVAIINSL 114 Query: 519 PTKKSPGPDGFTAEFYQRYKEELVPFLLKLFQSIENEGILPNLFYEASIILIPKPGRDTT 578 PTKKSPGPDGFTAEFYQRYKEELVPFLLKLFQSIE EGILPN FYEASIILIPKPGRDTT Sbjct: 115 PTKKSPGPDGFTAEFYQRYKEELVPFLLKLFQSIEKEGILPNSFYEASIILIPKPGRDTT 174 Query: 579 KKENFRPISLMNIDAKILNKILANRIQQHIKKLIHHDQVGFIPGMQGWFNIRKSINVIQH 638 KKENFRPISLMNIDAKILNKILANRIQQHIKKLIHHDQVGFIPGMQGWFNI KSINVIQH Sbjct: 175 KKENFRPISLMNIDAKILNKILANRIQQHIKKLIHHDQVGFIPGMQGWFNICKSINVIQH 234 Query: 639 INRTKDKNHMIISIDAEKAFDKIQQRFMLKTLNKLGIDGTYLQIIRAIYDKPTANIILNG 698 INR KDK+HMIISIDAEKAFDKIQQ FMLKTLNKLGIDGTY +IIRAIY KPTANIILNG Sbjct: 235 INRAKDKSHMIISIDAEKAFDKIQQPFMLKTLNKLGIDGTYFKIIRAIYGKPTANIILNG 294 Query: 699 QKLEAFPLKTGTRQGCPLSPLLFNIVLEVLARAIRQEKEIE 739 QKLEAFPLKTGTRQGCPLSPLLFNIVLEVLARAIRQEKEI+ Sbjct: 295 QKLEAFPLKTGTRQGCPLSPLLFNIVLEVLARAIRQEKEIK 335 >gi|2072951|gb|AAC51263.1| putative p150 [Homo sapiens] Length = 1275 Score = 523 bits (1347), Expect = e-147 Identities = 266/281 (94%), Positives = 271/281 (96%) Query: 459 EIQPTIREYYQHLYANKLENLEEMDKFLNTYTLPRLNQEEVESLNRPVTGSEIVAIINSL 518 EIQ TIREYY+HLYANKLENLEEMD FL+TYTLPRLNQEEVESLNRP+TGSEIVAIINSL Sbjct: 406 EIQTTIREYYKHLYANKLENLEEMDTFLDTYTLPRLNQEEVESLNRPITGSEIVAIINSL 465 Query: 519 PTKKSPGPDGFTAEFYQRYKEELVPFLLKLFQSIENEGILPNLFYEASIILIPKPGRDTT 578 PTKKS GPD FTAEFYQRYKEELVPFLLKLFQSIE EGILPN FYEASIILIPKPGRDTT Sbjct: 466 PTKKSLGPDRFTAEFYQRYKEELVPFLLKLFQSIEKEGILPNSFYEASIILIPKPGRDTT 525 Query: 579 KKENFRPISLMNIDAKILNKILANRIQQHIKKLIHHDQVGFIPGMQGWFNIRKSINVIQH 638 KKENFRPISLMNIDAKILNKILANRIQQ IKKLIHHDQVGFIPGMQGWFNIRKSINVIQH Sbjct: 526 KKENFRPISLMNIDAKILNKILANRIQQPIKKLIHHDQVGFIPGMQGWFNIRKSINVIQH 585 Query: 639 INRTKDKNHMIISIDAEKAFDKIQQRFMLKTLNKLGIDGTYLQIIRAIYDKPTANIILNG 698 INR KDKNHMIISIDAEKAFDKIQQ FMLKTLNKLGIDGTY +IIRAIYDKPTANIILNG Sbjct: 586 INRAKDKNHMIISIDAEKAFDKIQQPFMLKTLNKLGIDGTYFKIIRAIYDKPTANIILNG 645 Query: 699 QKLEAFPLKTGTRQGCPLSPLLFNIVLEVLARAIRQEKEIE 739 QKLEAFPLKTGTRQGCPLSPLLFNIVLEVLARAIRQEKEI+ Sbjct: 646 QKLEAFPLKTGTRQGCPLSPLLFNIVLEVLARAIRQEKEIK 686 >gi|225047|prf||1207289A reverse transcriptase related protein Length = 1259 Score = 521 bits (1342), Expect = e-146 Identities = 263/281 (93%), Positives = 271/281 (96%) Query: 459 EIQPTIREYYQHLYANKLENLEEMDKFLNTYTLPRLNQEEVESLNRPVTGSEIVAIINSL 518 EIQ TIREYY+HLYANKLENLEEMDKFL+TYTLPRLNQEEVESLNRP+T SEI AIINSL Sbjct: 405 EIQTTIREYYKHLYANKLENLEEMDKFLDTYTLPRLNQEEVESLNRPITSSEIEAIINSL 464 Query: 519 PTKKSPGPDGFTAEFYQRYKEELVPFLLKLFQSIENEGILPNLFYEASIILIPKPGRDTT 578 P KKSPGP+GFTAEFYQRYKEELVPFLLKLFQSIE EGILPN FYEASIILIPKPGRDTT Sbjct: 465 PNKKSPGPEGFTAEFYQRYKEELVPFLLKLFQSIEKEGILPNSFYEASIILIPKPGRDTT 524 Query: 579 KKENFRPISLMNIDAKILNKILANRIQQHIKKLIHHDQVGFIPGMQGWFNIRKSINVIQH 638 KKENFRPISLMNIDAKILNKILAN+IQQHIKKLIHHDQVGFIP MQGWFNIRKSIN+IQH Sbjct: 525 KKENFRPISLMNIDAKILNKILANQIQQHIKKLIHHDQVGFIPAMQGWFNIRKSINIIQH 584 Query: 639 INRTKDKNHMIISIDAEKAFDKIQQRFMLKTLNKLGIDGTYLQIIRAIYDKPTANIILNG 698 INRTKD NHMIISIDAEKAFDKIQQ FMLK LNKLGIDGTYL+IIRAIYDKPTANIILNG Sbjct: 585 INRTKDTNHMIISIDAEKAFDKIQQPFMLKPLNKLGIDGTYLKIIRAIYDKPTANIILNG 644 Query: 699 QKLEAFPLKTGTRQGCPLSPLLFNIVLEVLARAIRQEKEIE 739 QKLEAFPLKTGTRQGCPLSPLLFNIVLEVLARAIRQEKEI+ Sbjct: 645 QKLEAFPLKTGTRQGCPLSPLLFNIVLEVLARAIRQEKEIK 685 >gi|2072967|gb|AAC51273.1| putative p150 [Homo sapiens] Length = 1275 Score = 521 bits (1342), Expect = e-146 Identities = 262/281 (93%), Positives = 272/281 (96%) Query: 459 EIQPTIREYYQHLYANKLENLEEMDKFLNTYTLPRLNQEEVESLNRPVTGSEIVAIINSL 518 EIQ TIREYY+HLYANKLENLEEMDKFL+TYTLPR+NQEEVESLNRP+TGSEIVAIINSL Sbjct: 406 EIQTTIREYYKHLYANKLENLEEMDKFLHTYTLPRVNQEEVESLNRPITGSEIVAIINSL 465 Query: 519 PTKKSPGPDGFTAEFYQRYKEELVPFLLKLFQSIENEGILPNLFYEASIILIPKPGRDTT 578 PTKKSPGPDGFT EFYQRYKEELVPFLLKLFQSIE EGILPN FYEASIILIPKPGRDTT Sbjct: 466 PTKKSPGPDGFTDEFYQRYKEELVPFLLKLFQSIEKEGILPNSFYEASIILIPKPGRDTT 525 Query: 579 KKENFRPISLMNIDAKILNKILANRIQQHIKKLIHHDQVGFIPGMQGWFNIRKSINVIQH 638 KKENFRPISLMNIDAKILNKILAN+IQQHIKKLIHHDQVGFIPGMQGWFN+ KSINVIQH Sbjct: 526 KKENFRPISLMNIDAKILNKILANQIQQHIKKLIHHDQVGFIPGMQGWFNMCKSINVIQH 585 Query: 639 INRTKDKNHMIISIDAEKAFDKIQQRFMLKTLNKLGIDGTYLQIIRAIYDKPTANIILNG 698 INR KDKNHMIISIDAEKA DKIQQ F+LKTLNKLGIDGTY +I+RAIYDKPTANIILNG Sbjct: 586 INRAKDKNHMIISIDAEKALDKIQQPFVLKTLNKLGIDGTYFKIMRAIYDKPTANIILNG 645 Query: 699 QKLEAFPLKTGTRQGCPLSPLLFNIVLEVLARAIRQEKEIE 739 QKLEAFPLKTGTRQGCPLSPLLFNIVLEVLARAIRQEKEI+ Sbjct: 646 QKLEAFPLKTGTRQGCPLSPLLFNIVLEVLARAIRQEKEIK 686 >gi|106903|pir||B28096 line-1 protein ORF2 - human Length = 1275 Score = 517 bits (1332), Expect = e-145 Identities = 259/281 (92%), Positives = 269/281 (95%) Query: 459 EIQPTIREYYQHLYANKLENLEEMDKFLNTYTLPRLNQEEVESLNRPVTGSEIVAIINSL 518 EIQ TIREYY+HLYANKLENLEEMD FL+TYTLPRLNQEEVESLNRP+TG+EIVAIINSL Sbjct: 406 EIQTTIREYYKHLYANKLENLEEMDTFLDTYTLPRLNQEEVESLNRPITGAEIVAIINSL 465 Query: 519 PTKKSPGPDGFTAEFYQRYKEELVPFLLKLFQSIENEGILPNLFYEASIILIPKPGRDTT 578 TKKSPGPDGFTAEFYQRYKEELVPF LKLFQSIE EGILPN FYEASIILIPKPGRDTT Sbjct: 466 STKKSPGPDGFTAEFYQRYKEELVPFFLKLFQSIEKEGILPNSFYEASIILIPKPGRDTT 525 Query: 579 KKENFRPISLMNIDAKILNKILANRIQQHIKKLIHHDQVGFIPGMQGWFNIRKSINVIQH 638 KKENFRPISLMNIDAKILNKILAN+IQQHIKKLIHHDQVGFIPGMQGWFNIRKSINVIQH Sbjct: 526 KKENFRPISLMNIDAKILNKILANQIQQHIKKLIHHDQVGFIPGMQGWFNIRKSINVIQH 585 Query: 639 INRTKDKNHMIISIDAEKAFDKIQQRFMLKTLNKLGIDGTYLQIIRAIYDKPTANIILNG 698 INR KDKNHMI+SIDAEKAFDKIQQ FMLKT+NK+GIDG Y +IIRAIYDK TANIILNG Sbjct: 586 INRAKDKNHMIVSIDAEKAFDKIQQPFMLKTINKIGIDGMYFKIIRAIYDKTTANIILNG 645 Query: 699 QKLEAFPLKTGTRQGCPLSPLLFNIVLEVLARAIRQEKEIE 739 QKLEAFPLKTGTRQGCPLSPLLFNIVLE LARAIRQEKEI+ Sbjct: 646 QKLEAFPLKTGTRQGCPLSPLLFNIVLEFLARAIRQEKEIK 686 >gi|126295|sp|P08547|LIN1_HUMAN LINE-1 REVERSE TRANSCRIPTASE HOMOLOG Length = 1259 Score = 513 bits (1322), Expect = e-144 Identities = 261/281 (92%), Positives = 269/281 (95%) Query: 459 EIQPTIREYYQHLYANKLENLEEMDKFLNTYTLPRLNQEEVESLNRPVTGSEIVAIINSL 518 EIQ TIREYY+HLYANKLENLEEMDKFL+TYTLPRLNQEEVESLNRP+T SEI AIINSL Sbjct: 405 EIQTTIREYYKHLYANKLENLEEMDKFLDTYTLPRLNQEEVESLNRPITSSEIEAIINSL 464 Query: 519 PTKKSPGPDGFTAEFYQRYKEELVPFLLKLFQSIENEGILPNLFYEASIILIPKPGRDTT 578 P KKSPGP+GFTAEFYQRYKEELVPFLLKLFQSIE EGILPN FYEASIILIPKPGRDTT Sbjct: 465 PNKKSPGPEGFTAEFYQRYKEELVPFLLKLFQSIEKEGILPNSFYEASIILIPKPGRDTT 524 Query: 579 KKENFRPISLMNIDAKILNKILANRIQQHIKKLIHHDQVGFIPGMQGWFNIRKSINVIQH 638 KKENFRPISLMNIDAKILNKILAN+IQQHIKKLIHHDQVGFIP MQGWFNIRKSIN+IQH Sbjct: 525 KKENFRPISLMNIDAKILNKILANQIQQHIKKLIHHDQVGFIPAMQGWFNIRKSINIIQH 584 Query: 639 INRTKDKNHMIISIDAEKAFDKIQQRFMLKTLNKLGIDGTYLQIIRAIYDKPTANIILNG 698 INRTKD NHMIISIDAEKAFDKIQQ FMLK LNKLGIDGTYL+IIRAIYDKPTANIILNG Sbjct: 585 INRTKDTNHMIISIDAEKAFDKIQQPFMLKPLNKLGIDGTYLKIIRAIYDKPTANIILNG 644 Query: 699 QKLEAFPLKTGTRQGCPLSPLLFNIVLEVLARAIRQEKEIE 739 QKLEA PLKTGTRQGCPLSPLL NIVLEVLARAIRQEKEI+ Sbjct: 645 QKLEAPPLKTGTRQGCPLSPLLPNIVLEVLARAIRQEKEIK 685 >gi|21756813|dbj|BAC04963.1| unnamed protein product [Homo sapiens] Length = 372 Score = 482 bits (1241), Expect = e-135 Identities = 243/258 (94%), Positives = 249/258 (96%) Query: 482 MDKFLNTYTLPRLNQEEVESLNRPVTGSEIVAIINSLPTKKSPGPDGFTAEFYQRYKEEL 541 MDKFL+TYTLPRLNQEEVESLNRP+TG+EIVAIINSLPTKKSPGPDGFTAEFYQRYKEEL Sbjct: 1 MDKFLDTYTLPRLNQEEVESLNRPITGAEIVAIINSLPTKKSPGPDGFTAEFYQRYKEEL 60 Query: 542 VPFLLKLFQSIENEGILPNLFYEASIILIPKPGRDTTKKENFRPISLMNIDAKILNKILA 601 VPFLLKLFQS E EGILPN FYE SIILIPKPGRDTTKK+NFRPISLMNIDAKILNKILA Sbjct: 61 VPFLLKLFQSTEKEGILPNSFYEDSIILIPKPGRDTTKKDNFRPISLMNIDAKILNKILA 120 Query: 602 NRIQQHIKKLIHHDQVGFIPGMQGWFNIRKSINVIQHINRTKDKNHMIISIDAEKAFDKI 661 RIQQHIKKLIHHDQVGFIPGMQGWFNI KSINVIQHINR KDKNHMIISIDAEKAFDKI Sbjct: 121 KRIQQHIKKLIHHDQVGFIPGMQGWFNIGKSINVIQHINRAKDKNHMIISIDAEKAFDKI 180 Query: 662 QQRFMLKTLNKLGIDGTYLQIIRAIYDKPTANIILNGQKLEAFPLKTGTRQGCPLSPLLF 721 QQ FMLKTLNKLGIDGTY +IIRAIYDKPTANIILNGQKLEAFPLKTGTRQGCPLSPLLF Sbjct: 181 QQPFMLKTLNKLGIDGTYFKIIRAIYDKPTANIILNGQKLEAFPLKTGTRQGCPLSPLLF 240 Query: 722 NIVLEVLARAIRQEKEIE 739 NIVLEVLARAIRQEKEI+ Sbjct: 241 NIVLEVLARAIRQEKEIK 258 >gi|25031497|ref|XP_207552.1| similar to Retrovirus-related POL polyprotein [Mus musculus] Length = 3442 Score = 433 bits (1114), Expect = e-120 Identities = 208/281 (74%), Positives = 241/281 (85%) Query: 459 EIQPTIREYYQHLYANKLENLEEMDKFLNTYTLPRLNQEEVESLNRPVTGSEIVAIINSL 518 EIQ TIR +Y+ LY+ KLENL+EMDKFL+ Y +P+LNQ++V+ LN P++ EI A+INSL Sbjct: 2612 EIQNTIRSFYKRLYSTKLENLDEMDKFLDRYQVPKLNQDQVDHLNSPISPKEIEAVINSL 2671 Query: 519 PTKKSPGPDGFTAEFYQRYKEELVPFLLKLFQSIENEGILPNLFYEASIILIPKPGRDTT 578 PTKKSPGPDGF+AEFYQ +KE+L+P L KLF IE EG LPN FYEA+I LIPKP +D T Sbjct: 2672 PTKKSPGPDGFSAEFYQTFKEDLIPILHKLFHKIEVEGTLPNSFYEATITLIPKPQKDPT 2731 Query: 579 KKENFRPISLMNIDAKILNKILANRIQQHIKKLIHHDQVGFIPGMQGWFNIRKSINVIQH 638 K ENFRPISLMNIDAKILNKILANRIQ+HIK +IH DQVGFIPGMQGWFNIRKSINVI + Sbjct: 2732 KIENFRPISLMNIDAKILNKILANRIQEHIKAIIHPDQVGFIPGMQGWFNIRKSINVIHY 2791 Query: 639 INRTKDKNHMIISIDAEKAFDKIQQRFMLKTLNKLGIDGTYLQIIRAIYDKPTANIILNG 698 IN+ KDKNHMIIS+DAEKAFDKIQ FM+K L + GI G YL +I+AIY KP ANI +NG Sbjct: 2792 INKLKDKNHMIISLDAEKAFDKIQHPFMIKVLERSGIQGPYLNMIKAIYSKPVANIKVNG 2851 Query: 699 QKLEAFPLKTGTRQGCPLSPLLFNIVLEVLARAIRQEKEIE 739 +KLEA PLK+GTRQGCPLSP LFNIVLEVLARAIRQ+KEI+ Sbjct: 2852 EKLEAIPLKSGTRQGCPLSPYLFNIVLEVLARAIRQQKEIK 2892 >gi|25031585|ref|XP_207560.1| similar to Retrovirus-related POL polyprotein [Mus musculus] Length = 3349 Score = 432 bits (1112), Expect = e-120 Identities = 208/281 (74%), Positives = 241/281 (85%) Query: 459 EIQPTIREYYQHLYANKLENLEEMDKFLNTYTLPRLNQEEVESLNRPVTGSEIVAIINSL 518 EIQ TIR +Y+ LY+ KLENL+EMDKFL+ Y +P+LNQ++V+ LN P++ EI A+INSL Sbjct: 2495 EIQNTIRSFYKRLYSTKLENLDEMDKFLDRYQVPKLNQDQVDHLNSPISPKEIEAVINSL 2554 Query: 519 PTKKSPGPDGFTAEFYQRYKEELVPFLLKLFQSIENEGILPNLFYEASIILIPKPGRDTT 578 PTKKSPGPDGF+AEFYQ +KE+L+P L KLF IE EG LPN FYEA+I LIPKP +D T Sbjct: 2555 PTKKSPGPDGFSAEFYQTFKEDLIPILHKLFHKIEVEGTLPNSFYEATITLIPKPQKDPT 2614 Query: 579 KKENFRPISLMNIDAKILNKILANRIQQHIKKLIHHDQVGFIPGMQGWFNIRKSINVIQH 638 K ENFRPISLMNIDAKILNKILANRIQ+HIK +IH DQVGFIPGMQGWFNIRKSINVI + Sbjct: 2615 KIENFRPISLMNIDAKILNKILANRIQEHIKAIIHPDQVGFIPGMQGWFNIRKSINVIHY 2674 Query: 639 INRTKDKNHMIISIDAEKAFDKIQQRFMLKTLNKLGIDGTYLQIIRAIYDKPTANIILNG 698 IN+ KDKNHMIIS+DAEKAFDKIQ FM+K L + GI G YL +I+AIY KP ANI +NG Sbjct: 2675 INKLKDKNHMIISLDAEKAFDKIQHPFMIKVLERSGIQGPYLNMIKAIYSKPVANIKVNG 2734 Query: 699 QKLEAFPLKTGTRQGCPLSPLLFNIVLEVLARAIRQEKEIE 739 +KLEA PLK+GTRQGCPLSP LFNIVLEVLARAIRQ+KEI+ Sbjct: 2735 EKLEAIPLKSGTRQGCPLSPYLFNIVLEVLARAIRQQKEIK 2775 >gi|25020144|ref|XP_207791.1| similar to ORF2 [Mus musculus domesticus] Length = 3508 Score = 431 bits (1108), Expect = e-119 Identities = 208/281 (74%), Positives = 240/281 (85%) Query: 459 EIQPTIREYYQHLYANKLENLEEMDKFLNTYTLPRLNQEEVESLNRPVTGSEIVAIINSL 518 EIQ TIR +Y+ LY+ KLENL+EMDKFL+ Y +P+LNQ++V+ LN P++ EI A+INSL Sbjct: 913 EIQNTIRSFYKRLYSTKLENLDEMDKFLDRYQVPKLNQDQVDLLNSPISPKEIEAVINSL 972 Query: 519 PTKKSPGPDGFTAEFYQRYKEELVPFLLKLFQSIENEGILPNLFYEASIILIPKPGRDTT 578 P KKSPGPDGF+AEFYQ +KE+L P L KLF IE EGILPN FYEA+I LIPKP +D T Sbjct: 973 PAKKSPGPDGFSAEFYQTFKEDLTPVLHKLFHKIEVEGILPNSFYEATITLIPKPQKDPT 1032 Query: 579 KKENFRPISLMNIDAKILNKILANRIQQHIKKLIHHDQVGFIPGMQGWFNIRKSINVIQH 638 K ENFRPISLMNIDAKILNKILANRIQ+HIK +IH DQVGFIPGMQGWFNIRKSINVI + Sbjct: 1033 KIENFRPISLMNIDAKILNKILANRIQEHIKAIIHPDQVGFIPGMQGWFNIRKSINVIHY 1092 Query: 639 INRTKDKNHMIISIDAEKAFDKIQQRFMLKTLNKLGIDGTYLQIIRAIYDKPTANIILNG 698 IN+ KDKNHMIIS+DAEKAFDKIQ FM+K L + GI G YL +I+AIY KP ANI +NG Sbjct: 1093 INKLKDKNHMIISLDAEKAFDKIQHPFMIKVLERSGIQGQYLNMIKAIYSKPVANIKVNG 1152 Query: 699 QKLEAFPLKTGTRQGCPLSPLLFNIVLEVLARAIRQEKEIE 739 +KLEA PLK+GTRQGCPLSP LFNIVLEVLARAIRQ+KEI+ Sbjct: 1153 EKLEAIPLKSGTRQGCPLSPYLFNIVLEVLARAIRQQKEIK 1193 >gi|126296|sp|P08548|LIN1_NYCCO LINE-1 REVERSE TRANSCRIPTASE HOMOLOG gi|225048|prf||1207289B reverse transcriptase related protein Length = 1260 Score = 429 bits (1102), Expect = e-118 Identities = 207/281 (73%), Positives = 247/281 (87%) Query: 459 EIQPTIREYYQHLYANKLENLEEMDKFLNTYTLPRLNQEEVESLNRPVTGSEIVAIINSL 518 EIQ + EYY+ LY++K ENL+E+D++L LPRL+Q+EVE LNRP++ SEI + I +L Sbjct: 405 EIQKILNEYYKKLYSHKYENLKEIDQYLEACHLPRLSQKEVEMLNRPISSSEIASTIQNL 464 Query: 519 PTKKSPGPDGFTAEFYQRYKEELVPFLLKLFQSIENEGILPNLFYEASIILIPKPGRDTT 578 P KKSPGPDGFT+EFYQ +KEELVP LL LFQ+IE EGILPN FYEA+I LIPKPG+D T Sbjct: 465 PKKKSPGPDGFTSEFYQTFKEELVPILLNLFQNIEKEGILPNTFYEANITLIPKPGKDPT 524 Query: 579 KKENFRPISLMNIDAKILNKILANRIQQHIKKLIHHDQVGFIPGMQGWFNIRKSINVIQH 638 +KEN+RPISLMNIDAKILNKIL NRIQQHIKK+IHHDQVGFIPG QGWFNIRKSINVIQH Sbjct: 525 RKENYRPISLMNIDAKILNKILTNRIQQHIKKIIHHDQVGFIPGSQGWFNIRKSINVIQH 584 Query: 639 INRTKDKNHMIISIDAEKAFDKIQQRFMLKTLNKLGIDGTYLQIIRAIYDKPTANIILNG 698 IN+ K+K+HMI+SIDAEKAFD IQ FM++TL K+GI+GT+L++I AIY KPTANIILNG Sbjct: 585 INKLKNKDHMILSIDAEKAFDNIQHPFMIRTLKKIGIEGTFLKLIEAIYSKPTANIILNG 644 Query: 699 QKLEAFPLKTGTRQGCPLSPLLFNIVLEVLARAIRQEKEIE 739 KL++FPL++GTRQGCPLSPLLFNIV+EVLA AIR+EK I+ Sbjct: 645 VKLKSFPLRSGTRQGCPLSPLLFNIVMEVLAIAIREEKAIK 685 >gi|25020138|ref|XP_207789.1| similar to Retrovirus-related POL polyprotein [Mus musculus] Length = 1990 Score = 426 bits (1096), Expect = e-118 Identities = 208/281 (74%), Positives = 241/281 (85%) Query: 459 EIQPTIREYYQHLYANKLENLEEMDKFLNTYTLPRLNQEEVESLNRPVTGSEIVAIINSL 518 EIQ TIR +Y+ LY+ KLENL+EMDKFL+ Y +P+LNQ++V+ LN P++ EI A+INSL Sbjct: 1122 EIQNTIRSFYKRLYSTKLENLDEMDKFLDRYQVPKLNQDQVDHLNSPISPKEIEAVINSL 1181 Query: 519 PTKKSPGPDGFTAEFYQRYKEELVPFLLKLFQSIENEGILPNLFYEASIILIPKPGRDTT 578 PTKKSPGPDGF+AEFYQ +KE+L+P L KLF IE EG LPN FYEA+I LIPKP +D T Sbjct: 1182 PTKKSPGPDGFSAEFYQTFKEDLIPILHKLFHKIEVEGTLPNSFYEATITLIPKPQKDPT 1241 Query: 579 KKENFRPISLMNIDAKILNKILANRIQQHIKKLIHHDQVGFIPGMQGWFNIRKSINVIQH 638 K ENFRPISLMNIDAKILNKILANRIQ+HIK +IH DQVGFIPGMQGWFNIRKSINVI + Sbjct: 1242 KIENFRPISLMNIDAKILNKILANRIQEHIKAIIHPDQVGFIPGMQGWFNIRKSINVIHY 1301 Query: 639 INRTKDKNHMIISIDAEKAFDKIQQRFMLKTLNKLGIDGTYLQIIRAIYDKPTANIILNG 698 IN+ KDKNHMIIS+DAEKAFDKIQ FM+K L + GI G YL +I+AIY KP ANI +NG Sbjct: 1302 INKLKDKNHMIISLDAEKAFDKIQHPFMIKVLERSGIQGPYLNMIKAIYSKPVANIKVNG 1361 Query: 699 QKLEAFPLKTGTRQGCPLSPLLFNIVLEVLARAIRQEKEIE 739 +KLEA PLK+GTRQGCPLSP LFNIVLEVLARAIRQ+KEI+ Sbjct: 1362 EKLEAIPLKSGTRQGCPLSPYLFNIVLEVLARAIRQQKEIK 1402 >gi|25024570|ref|XP_207164.1| similar to Retrovirus-related POL polyprotein [Mus musculus] Length = 1962 Score = 426 bits (1095), Expect = e-118 Identities = 208/281 (74%), Positives = 241/281 (85%) Query: 459 EIQPTIREYYQHLYANKLENLEEMDKFLNTYTLPRLNQEEVESLNRPVTGSEIVAIINSL 518 EIQ TIR +Y+ LY+ KLENL+EMDKFL+ Y +P+LNQ++V+ LN P++ EI A+INSL Sbjct: 954 EIQNTIRSFYKRLYSTKLENLDEMDKFLDRYQVPKLNQDQVDHLNSPISPKEIEAVINSL 1013 Query: 519 PTKKSPGPDGFTAEFYQRYKEELVPFLLKLFQSIENEGILPNLFYEASIILIPKPGRDTT 578 PTKKSPGPDGF+AEFYQ +KE+L+P L KLF IE EG LPN FYEA+I LIPKP +D T Sbjct: 1014 PTKKSPGPDGFSAEFYQTFKEDLIPILHKLFHKIEVEGTLPNSFYEATITLIPKPQKDPT 1073 Query: 579 KKENFRPISLMNIDAKILNKILANRIQQHIKKLIHHDQVGFIPGMQGWFNIRKSINVIQH 638 K ENFRPISLMNIDAKILNKILANRIQ+HIK +IH DQVGFIPGMQGWFNIRKSINVI + Sbjct: 1074 KIENFRPISLMNIDAKILNKILANRIQEHIKAIIHPDQVGFIPGMQGWFNIRKSINVIHY 1133 Query: 639 INRTKDKNHMIISIDAEKAFDKIQQRFMLKTLNKLGIDGTYLQIIRAIYDKPTANIILNG 698 IN+ KDKNHMIIS+DAEKAFDKIQ FM+K L + GI G YL +I+AIY KP ANI +NG Sbjct: 1134 INKLKDKNHMIISLDAEKAFDKIQHPFMIKVLERSGIQGPYLNMIKAIYSKPVANIKVNG 1193 Query: 699 QKLEAFPLKTGTRQGCPLSPLLFNIVLEVLARAIRQEKEIE 739 +KLEA PLK+GTRQGCPLSP LFNIVLEVLARAIRQ+KEI+ Sbjct: 1194 EKLEAIPLKSGTRQGCPLSPYLFNIVLEVLARAIRQQKEIK 1234 >gi|25032539|ref|XP_207401.1| similar to Retrovirus-related POL polyprotein [Mus musculus] Length = 2450 Score = 426 bits (1095), Expect = e-118 Identities = 208/281 (74%), Positives = 241/281 (85%) Query: 459 EIQPTIREYYQHLYANKLENLEEMDKFLNTYTLPRLNQEEVESLNRPVTGSEIVAIINSL 518 EIQ TIR +Y+ LY+ KLENL+EMDKFL+ Y +P+LNQ++V+ LN P++ EI A+INSL Sbjct: 1582 EIQNTIRSFYKRLYSTKLENLDEMDKFLDRYQVPKLNQDQVDHLNSPISPKEIEAVINSL 1641 Query: 519 PTKKSPGPDGFTAEFYQRYKEELVPFLLKLFQSIENEGILPNLFYEASIILIPKPGRDTT 578 PTKKSPGPDGF+AEFYQ +KE+L+P L KLF IE EG LPN FYEA+I LIPKP +D T Sbjct: 1642 PTKKSPGPDGFSAEFYQTFKEDLIPILHKLFHKIEVEGTLPNSFYEATITLIPKPQKDPT 1701 Query: 579 KKENFRPISLMNIDAKILNKILANRIQQHIKKLIHHDQVGFIPGMQGWFNIRKSINVIQH 638 K ENFRPISLMNIDAKILNKILANRIQ+HIK +IH DQVGFIPGMQGWFNIRKSINVI + Sbjct: 1702 KIENFRPISLMNIDAKILNKILANRIQEHIKAIIHPDQVGFIPGMQGWFNIRKSINVIHY 1761 Query: 639 INRTKDKNHMIISIDAEKAFDKIQQRFMLKTLNKLGIDGTYLQIIRAIYDKPTANIILNG 698 IN+ KDKNHMIIS+DAEKAFDKIQ FM+K L + GI G YL +I+AIY KP ANI +NG Sbjct: 1762 INKLKDKNHMIISLDAEKAFDKIQHPFMIKVLERSGIQGPYLNMIKAIYSKPVANIKVNG 1821 Query: 699 QKLEAFPLKTGTRQGCPLSPLLFNIVLEVLARAIRQEKEIE 739 +KLEA PLK+GTRQGCPLSP LFNIVLEVLARAIRQ+KEI+ Sbjct: 1822 EKLEAIPLKSGTRQGCPLSPYLFNIVLEVLARAIRQQKEIK 1862 Score = 48.1 bits (113), Expect = 6e-04 Identities = 21/31 (67%), Positives = 26/31 (83%) Query: 459 EIQPTIREYYQHLYANKLENLEEMDKFLNTY 489 EIQ TIR +Y+ LY+ KLENL+EMDKFL+ Y Sbjct: 413 EIQNTIRSFYKRLYSTKLENLDEMDKFLDRY 443 >gi|7429144|pir||GNMSLL retrovirus-related reverse transcriptase homolog - mouse retrotransposon gi|804788|gb|AAA66024.1| 2855 is the position of the first start codon in ORF 2; putative Length = 1281 Score = 425 bits (1093), Expect = e-117 Identities = 208/281 (74%), Positives = 241/281 (85%) Query: 459 EIQPTIREYYQHLYANKLENLEEMDKFLNTYTLPRLNQEEVESLNRPVTGSEIVAIINSL 518 EIQ TIR +Y+ LY+ KLENL+EMDKFL+ Y +P+LNQ++V+ LN P++ EI A+INSL Sbjct: 413 EIQNTIRSFYKRLYSTKLENLDEMDKFLDRYQVPKLNQDQVDHLNSPISPKEIEAVINSL 472 Query: 519 PTKKSPGPDGFTAEFYQRYKEELVPFLLKLFQSIENEGILPNLFYEASIILIPKPGRDTT 578 PTKKSPGPDGF+AEFYQ +KE+L+P L KLF IE EG LPN FYEA+I LIPKP +D T Sbjct: 473 PTKKSPGPDGFSAEFYQTFKEDLIPILHKLFHKIEVEGTLPNSFYEATITLIPKPQKDPT 532 Query: 579 KKENFRPISLMNIDAKILNKILANRIQQHIKKLIHHDQVGFIPGMQGWFNIRKSINVIQH 638 K ENFRPISLMNIDAKILNKILANRIQ+HIK +IH DQVGFIPGMQGWFNIRKSINVI + Sbjct: 533 KIENFRPISLMNIDAKILNKILANRIQEHIKAIIHPDQVGFIPGMQGWFNIRKSINVIHY 592 Query: 639 INRTKDKNHMIISIDAEKAFDKIQQRFMLKTLNKLGIDGTYLQIIRAIYDKPTANIILNG 698 IN+ KDKNHMIIS+DAEKAFDKIQ FM+K L + GI G YL +I+AIY KP ANI +NG Sbjct: 593 INKLKDKNHMIISLDAEKAFDKIQHPFMIKVLERSGIQGPYLNMIKAIYSKPVANIKVNG 652 Query: 699 QKLEAFPLKTGTRQGCPLSPLLFNIVLEVLARAIRQEKEIE 739 +KLEA PLK+GTRQGCPLSP LFNIVLEVLARAIRQ+KEI+ Sbjct: 653 EKLEAIPLKSGTRQGCPLSPYLFNIVLEVLARAIRQQKEIK 693 >gi|558908|gb|AAA67727.1| reverse transcriptase Length = 1281 Score = 425 bits (1093), Expect = e-117 Identities = 208/281 (74%), Positives = 241/281 (85%) Query: 459 EIQPTIREYYQHLYANKLENLEEMDKFLNTYTLPRLNQEEVESLNRPVTGSEIVAIINSL 518 EIQ TIR +Y+ LY+ KLENL+EMDKFL+ Y +P+LNQ++V+ LN P++ EI A+INSL Sbjct: 413 EIQNTIRSFYKRLYSTKLENLDEMDKFLDRYQVPKLNQDQVDHLNSPISPKEIEAVINSL 472 Query: 519 PTKKSPGPDGFTAEFYQRYKEELVPFLLKLFQSIENEGILPNLFYEASIILIPKPGRDTT 578 PTKKSPGPDGF+AEFYQ +KE+L+P L KLF IE EG LPN FYEA+I LIPKP +D T Sbjct: 473 PTKKSPGPDGFSAEFYQTFKEDLIPILHKLFHKIEVEGTLPNSFYEATITLIPKPQKDPT 532 Query: 579 KKENFRPISLMNIDAKILNKILANRIQQHIKKLIHHDQVGFIPGMQGWFNIRKSINVIQH 638 K ENFRPISLMNIDAKILNKILANRIQ+HIK +IH DQVGFIPGMQGWFNIRKSINVI + Sbjct: 533 KIENFRPISLMNIDAKILNKILANRIQEHIKAIIHPDQVGFIPGMQGWFNIRKSINVIHY 592 Query: 639 INRTKDKNHMIISIDAEKAFDKIQQRFMLKTLNKLGIDGTYLQIIRAIYDKPTANIILNG 698 IN+ KDKNHMIIS+DAEKAFDKIQ FM+K L + GI G YL +I+AIY KP ANI +NG Sbjct: 593 INKLKDKNHMIISLDAEKAFDKIQHPFMIKVLERSGIQGPYLNMIKAIYSKPVANIKVNG 652 Query: 699 QKLEAFPLKTGTRQGCPLSPLLFNIVLEVLARAIRQEKEIE 739 +KLEA PLK+GTRQGCPLSP LFNIVLEVLARAIRQ+KEI+ Sbjct: 653 EKLEAIPLKSGTRQGCPLSPYLFNIVLEVLARAIRQQKEIK 693 >gi|16508047|gb|AAL17972.1| pORF2 [Mus musculus domesticus] Length = 1281 Score = 425 bits (1093), Expect = e-117 Identities = 208/281 (74%), Positives = 241/281 (85%) Query: 459 EIQPTIREYYQHLYANKLENLEEMDKFLNTYTLPRLNQEEVESLNRPVTGSEIVAIINSL 518 EIQ TIR +Y+ LY+ KLENL+EMDKFL+ Y +P+LNQ++V+ LN P++ EI A+INSL Sbjct: 413 EIQNTIRSFYKRLYSTKLENLDEMDKFLDRYQVPKLNQDQVDHLNSPISPKEIEAVINSL 472 Query: 519 PTKKSPGPDGFTAEFYQRYKEELVPFLLKLFQSIENEGILPNLFYEASIILIPKPGRDTT 578 PTKKSPGPDGF+AEFYQ +KE+L+P L KLF IE EG LPN FYEA+I LIPKP +D T Sbjct: 473 PTKKSPGPDGFSAEFYQTFKEDLIPILHKLFHKIEVEGTLPNSFYEATITLIPKPQKDPT 532 Query: 579 KKENFRPISLMNIDAKILNKILANRIQQHIKKLIHHDQVGFIPGMQGWFNIRKSINVIQH 638 K ENFRPISLMNIDAKILNKILANRIQ+HIK +IH DQVGFIPGMQGWFNIRKSINVI + Sbjct: 533 KIENFRPISLMNIDAKILNKILANRIQEHIKAIIHPDQVGFIPGMQGWFNIRKSINVIHY 592 Query: 639 INRTKDKNHMIISIDAEKAFDKIQQRFMLKTLNKLGIDGTYLQIIRAIYDKPTANIILNG 698 IN+ KDKNHMIIS+DAEKAFDKIQ FM+K L + GI G YL +I+AIY KP ANI +NG Sbjct: 593 INKLKDKNHMIISLDAEKAFDKIQHPFMIKVLERSGIQGPYLNMIKAIYSKPVANIKVNG 652 Query: 699 QKLEAFPLKTGTRQGCPLSPLLFNIVLEVLARAIRQEKEIE 739 +KLEA PLK+GTRQGCPLSP LFNIVLEVLARAIRQ+KEI+ Sbjct: 653 EKLEAIPLKSGTRQGCPLSPYLFNIVLEVLARAIRQQKEIK 693 >gi|28545301|ref|XP_204245.2| similar to Retrovirus-related POL polyprotein [Mus musculus] Length = 1281 Score = 425 bits (1093), Expect = e-117 Identities = 208/281 (74%), Positives = 241/281 (85%) Query: 459 EIQPTIREYYQHLYANKLENLEEMDKFLNTYTLPRLNQEEVESLNRPVTGSEIVAIINSL 518 EIQ TIR +Y+ LY+ KLENL+EMDKFL+ Y +P+LNQ++V+ LN P++ EI A+INSL Sbjct: 413 EIQNTIRSFYKRLYSTKLENLDEMDKFLDRYQVPKLNQDQVDHLNSPISPKEIEAVINSL 472 Query: 519 PTKKSPGPDGFTAEFYQRYKEELVPFLLKLFQSIENEGILPNLFYEASIILIPKPGRDTT 578 PTKKSPGPDGF+AEFYQ +KE+L+P L KLF IE EG LPN FYEA+I LIPKP +D T Sbjct: 473 PTKKSPGPDGFSAEFYQTFKEDLIPILHKLFHKIEVEGTLPNSFYEATITLIPKPQKDPT 532 Query: 579 KKENFRPISLMNIDAKILNKILANRIQQHIKKLIHHDQVGFIPGMQGWFNIRKSINVIQH 638 K ENFRPISLMNIDAKILNKILANRIQ+HIK +IH DQVGFIPGMQGWFNIRKSINVI + Sbjct: 533 KIENFRPISLMNIDAKILNKILANRIQEHIKAIIHPDQVGFIPGMQGWFNIRKSINVIHY 592 Query: 639 INRTKDKNHMIISIDAEKAFDKIQQRFMLKTLNKLGIDGTYLQIIRAIYDKPTANIILNG 698 IN+ KDKNHMIIS+DAEKAFDKIQ FM+K L + GI G YL +I+AIY KP ANI +NG Sbjct: 593 INKLKDKNHMIISLDAEKAFDKIQHPFMIKVLERSGIQGPYLNMIKAIYSKPVANIKVNG 652 Query: 699 QKLEAFPLKTGTRQGCPLSPLLFNIVLEVLARAIRQEKEIE 739 +KLEA PLK+GTRQGCPLSP LFNIVLEVLARAIRQ+KEI+ Sbjct: 653 EKLEAIPLKSGTRQGCPLSPYLFNIVLEVLARAIRQQKEIK 693 >gi|25030042|ref|XP_207307.1| similar to Retrovirus-related POL polyprotein [Mus musculus] Length = 1880 Score = 425 bits (1093), Expect = e-117 Identities = 208/281 (74%), Positives = 241/281 (85%) Query: 459 EIQPTIREYYQHLYANKLENLEEMDKFLNTYTLPRLNQEEVESLNRPVTGSEIVAIINSL 518 EIQ TIR +Y+ LY+ KLENL+EMDKFL+ Y +P+LNQ++V+ LN P++ EI A+INSL Sbjct: 1012 EIQNTIRSFYKRLYSTKLENLDEMDKFLDRYQVPKLNQDQVDHLNSPISPKEIEAVINSL 1071 Query: 519 PTKKSPGPDGFTAEFYQRYKEELVPFLLKLFQSIENEGILPNLFYEASIILIPKPGRDTT 578 PTKKSPGPDGF+AEFYQ +KE+L+P L KLF IE EG LPN FYEA+I LIPKP +D T Sbjct: 1072 PTKKSPGPDGFSAEFYQTFKEDLIPVLHKLFHKIEVEGTLPNSFYEATITLIPKPLKDPT 1131 Query: 579 KKENFRPISLMNIDAKILNKILANRIQQHIKKLIHHDQVGFIPGMQGWFNIRKSINVIQH 638 K ENFRPISLMNIDAKILNKILANRIQ+HIK +IH DQVGFIPGMQGWFNIRKSINVI + Sbjct: 1132 KIENFRPISLMNIDAKILNKILANRIQEHIKAIIHPDQVGFIPGMQGWFNIRKSINVIHY 1191 Query: 639 INRTKDKNHMIISIDAEKAFDKIQQRFMLKTLNKLGIDGTYLQIIRAIYDKPTANIILNG 698 IN+ KDKNHMIIS+DAEKAFDKIQ FM+K L + GI G YL +I+AIY KP ANI +NG Sbjct: 1192 INKLKDKNHMIISLDAEKAFDKIQHPFMIKVLERSGIQGPYLNMIKAIYSKPVANIKVNG 1251 Query: 699 QKLEAFPLKTGTRQGCPLSPLLFNIVLEVLARAIRQEKEIE 739 +KLEA PLK+GTRQGCPLSP LFNIVLEVLARAIRQ+KEI+ Sbjct: 1252 EKLEAIPLKSGTRQGCPLSPYLFNIVLEVLARAIRQQKEIK 1292 >gi|25020962|ref|XP_207793.1| similar to Retrovirus-related POL polyprotein [Mus musculus] Length = 1834 Score = 425 bits (1092), Expect = e-117 Identities = 208/281 (74%), Positives = 241/281 (85%) Query: 459 EIQPTIREYYQHLYANKLENLEEMDKFLNTYTLPRLNQEEVESLNRPVTGSEIVAIINSL 518 EIQ TIR +Y+ LY+ KLENL+EMDKFL+ Y +P+LNQ++V+ LN P++ EI A+INSL Sbjct: 966 EIQNTIRSFYKRLYSTKLENLDEMDKFLDRYQVPKLNQDQVDHLNSPISPKEIEAVINSL 1025 Query: 519 PTKKSPGPDGFTAEFYQRYKEELVPFLLKLFQSIENEGILPNLFYEASIILIPKPGRDTT 578 PTKKSPGPDGF+AEFYQ +KE+L+P L KLF IE EG LPN FYEA+I LIPKP +D T Sbjct: 1026 PTKKSPGPDGFSAEFYQTFKEDLIPILHKLFHKIEVEGTLPNSFYEATITLIPKPQKDPT 1085 Query: 579 KKENFRPISLMNIDAKILNKILANRIQQHIKKLIHHDQVGFIPGMQGWFNIRKSINVIQH 638 K ENFRPISLMNIDAKILNKILANRIQ+HIK +IH DQVGFIPGMQGWFNIRKSINVI + Sbjct: 1086 KIENFRPISLMNIDAKILNKILANRIQEHIKAIIHPDQVGFIPGMQGWFNIRKSINVIHY 1145 Query: 639 INRTKDKNHMIISIDAEKAFDKIQQRFMLKTLNKLGIDGTYLQIIRAIYDKPTANIILNG 698 IN+ KDKNHMIIS+DAEKAFDKIQ FM+K L + GI G YL +I+AIY KP ANI +NG Sbjct: 1146 INKLKDKNHMIISLDAEKAFDKIQHPFMIKVLERSGIQGPYLNMIKAIYSKPVANIKVNG 1205 Query: 699 QKLEAFPLKTGTRQGCPLSPLLFNIVLEVLARAIRQEKEIE 739 +KLEA PLK+GTRQGCPLSP LFNIVLEVLARAIRQ+KEI+ Sbjct: 1206 EKLEAIPLKSGTRQGCPLSPYLFNIVLEVLARAIRQQKEIK 1246 >gi|25021569|ref|XP_207624.1| similar to Retrovirus-related POL polyprotein [Mus musculus] Length = 1773 Score = 425 bits (1092), Expect = e-117 Identities = 208/281 (74%), Positives = 241/281 (85%) Query: 459 EIQPTIREYYQHLYANKLENLEEMDKFLNTYTLPRLNQEEVESLNRPVTGSEIVAIINSL 518 EIQ TIR +Y+ LY+ KLENL+EMDKFL+ Y +P+LNQ++V+ LN P++ EI A+INSL Sbjct: 905 EIQNTIRSFYKRLYSTKLENLDEMDKFLDRYQVPKLNQDQVDHLNSPISPKEIEAVINSL 964 Query: 519 PTKKSPGPDGFTAEFYQRYKEELVPFLLKLFQSIENEGILPNLFYEASIILIPKPGRDTT 578 PTKKSPGPDGF+AEFYQ +KE+L+P L KLF IE EG LPN FYEA+I LIPKP +D T Sbjct: 965 PTKKSPGPDGFSAEFYQTFKEDLIPILHKLFHKIEVEGTLPNSFYEATITLIPKPQKDPT 1024 Query: 579 KKENFRPISLMNIDAKILNKILANRIQQHIKKLIHHDQVGFIPGMQGWFNIRKSINVIQH 638 K ENFRPISLMNIDAKILNKILANRIQ+HIK +IH DQVGFIPGMQGWFNIRKSINVI + Sbjct: 1025 KIENFRPISLMNIDAKILNKILANRIQEHIKAIIHPDQVGFIPGMQGWFNIRKSINVIHY 1084 Query: 639 INRTKDKNHMIISIDAEKAFDKIQQRFMLKTLNKLGIDGTYLQIIRAIYDKPTANIILNG 698 IN+ KDKNHMIIS+DAEKAFDKIQ FM+K L + GI G YL +I+AIY KP ANI +NG Sbjct: 1085 INKLKDKNHMIISLDAEKAFDKIQHPFMIKVLERSGIQGPYLNMIKAIYSKPVANIKVNG 1144 Query: 699 QKLEAFPLKTGTRQGCPLSPLLFNIVLEVLARAIRQEKEIE 739 +KLEA PLK+GTRQGCPLSP LFNIVLEVLARAIRQ+KEI+ Sbjct: 1145 EKLEAIPLKSGTRQGCPLSPYLFNIVLEVLARAIRQQKEIK 1185 >gi|130402|sp|P11369|POL2_MOUSE Retrovirus-related POL polyprotein [Contains: Reverse transcriptase ; Endonuclease] Length = 1300 Score = 424 bits (1091), Expect = e-117 Identities = 208/281 (74%), Positives = 241/281 (85%) Query: 459 EIQPTIREYYQHLYANKLENLEEMDKFLNTYTLPRLNQEEVESLNRPVTGSEIVAIINSL 518 EIQ TIR +Y+ LY+ KLENL+EMDKFL+ Y +P+LNQ++V+ LN P++ EI A+INSL Sbjct: 432 EIQNTIRSFYKRLYSTKLENLDEMDKFLDRYQVPKLNQDQVDHLNSPISPKEIEAVINSL 491 Query: 519 PTKKSPGPDGFTAEFYQRYKEELVPFLLKLFQSIENEGILPNLFYEASIILIPKPGRDTT 578 PTKKSPGPDGF+AEFYQ +KE+L+P L KLF IE EG LPN FYEA+I LIPKP +D T Sbjct: 492 PTKKSPGPDGFSAEFYQTFKEDLIPILHKLFHKIEVEGTLPNSFYEATITLIPKPQKDPT 551 Query: 579 KKENFRPISLMNIDAKILNKILANRIQQHIKKLIHHDQVGFIPGMQGWFNIRKSINVIQH 638 K ENFRPISLMNIDAKILNKILANRIQ+HIK +IH DQVGFIPGMQGWFNIRKSINVI + Sbjct: 552 KIENFRPISLMNIDAKILNKILANRIQEHIKAIIHPDQVGFIPGMQGWFNIRKSINVIHY 611 Query: 639 INRTKDKNHMIISIDAEKAFDKIQQRFMLKTLNKLGIDGTYLQIIRAIYDKPTANIILNG 698 IN+ KDKNHMIIS+DAEKAFDKIQ FM+K L + GI G YL +I+AIY KP ANI +NG Sbjct: 612 INKLKDKNHMIISLDAEKAFDKIQHPFMIKVLERSGIQGPYLNMIKAIYSKPVANIKVNG 671 Query: 699 QKLEAFPLKTGTRQGCPLSPLLFNIVLEVLARAIRQEKEIE 739 +KLEA PLK+GTRQGCPLSP LFNIVLEVLARAIRQ+KEI+ Sbjct: 672 EKLEAIPLKSGTRQGCPLSPYLFNIVLEVLARAIRQQKEIK 712 >gi|25021577|ref|XP_207628.1| similar to Retrovirus-related POL polyprotein [Mus musculus] Length = 1865 Score = 424 bits (1090), Expect = e-117 Identities = 208/281 (74%), Positives = 241/281 (85%) Query: 459 EIQPTIREYYQHLYANKLENLEEMDKFLNTYTLPRLNQEEVESLNRPVTGSEIVAIINSL 518 EIQ TIR +Y+ LY+ KLENL+EMDKFL+ Y +P+LNQ++V+ LN P++ EI A+INSL Sbjct: 837 EIQNTIRSFYKRLYSTKLENLDEMDKFLDRYQVPKLNQDQVDHLNSPISPKEIEAVINSL 896 Query: 519 PTKKSPGPDGFTAEFYQRYKEELVPFLLKLFQSIENEGILPNLFYEASIILIPKPGRDTT 578 PTKKSPGPDGF+AEFYQ +KE+L+P L KLF IE EG LPN FYEA+I LIPKP +D T Sbjct: 897 PTKKSPGPDGFSAEFYQTFKEDLIPILHKLFHKIEVEGTLPNSFYEATITLIPKPQKDPT 956 Query: 579 KKENFRPISLMNIDAKILNKILANRIQQHIKKLIHHDQVGFIPGMQGWFNIRKSINVIQH 638 K ENFRPISLMNIDAKILNKILANRIQ+HIK +IH DQVGFIPGMQGWFNIRKSINVI + Sbjct: 957 KIENFRPISLMNIDAKILNKILANRIQEHIKAIIHPDQVGFIPGMQGWFNIRKSINVIHY 1016 Query: 639 INRTKDKNHMIISIDAEKAFDKIQQRFMLKTLNKLGIDGTYLQIIRAIYDKPTANIILNG 698 IN+ KDKNHMIIS+DAEKAFDKIQ FM+K L + GI G YL +I+AIY KP ANI +NG Sbjct: 1017 INKLKDKNHMIISLDAEKAFDKIQHPFMIKVLERSGIQGPYLNMIKAIYSKPVANIKVNG 1076 Query: 699 QKLEAFPLKTGTRQGCPLSPLLFNIVLEVLARAIRQEKEIE 739 +KLEA PLK+GTRQGCPLSP LFNIVLEVLARAIRQ+KEI+ Sbjct: 1077 EKLEAIPLKSGTRQGCPLSPYLFNIVLEVLARAIRQQKEIK 1117 >gi|198646|gb|AAA39398.1| ORF2; 5' end undetermined Length = 1300 Score = 424 bits (1090), Expect = e-117 Identities = 208/281 (74%), Positives = 240/281 (85%) Query: 459 EIQPTIREYYQHLYANKLENLEEMDKFLNTYTLPRLNQEEVESLNRPVTGSEIVAIINSL 518 EIQ TIR +Y LY+ KLENL+EMDKFL+ Y +P+LNQ++V+ LN P++ EI A+INSL Sbjct: 432 EIQNTIRSFYTRLYSTKLENLDEMDKFLDRYQVPKLNQDQVDHLNSPISPKEIEAVINSL 491 Query: 519 PTKKSPGPDGFTAEFYQRYKEELVPFLLKLFQSIENEGILPNLFYEASIILIPKPGRDTT 578 PTKKSPGPDGF+AEFYQ +KE+L+P L KLF IE EG LPN FYEA+I LIPKP +D T Sbjct: 492 PTKKSPGPDGFSAEFYQTFKEDLIPILHKLFHKIEVEGTLPNSFYEATITLIPKPQKDPT 551 Query: 579 KKENFRPISLMNIDAKILNKILANRIQQHIKKLIHHDQVGFIPGMQGWFNIRKSINVIQH 638 K ENFRPISLMNIDAKILNKILANRIQ+HIK +IH DQVGFIPGMQGWFNIRKSINVI + Sbjct: 552 KIENFRPISLMNIDAKILNKILANRIQEHIKAIIHPDQVGFIPGMQGWFNIRKSINVIHY 611 Query: 639 INRTKDKNHMIISIDAEKAFDKIQQRFMLKTLNKLGIDGTYLQIIRAIYDKPTANIILNG 698 IN+ KDKNHMIIS+DAEKAFDKIQ FM+K L + GI G YL +I+AIY KP ANI +NG Sbjct: 612 INKLKDKNHMIISLDAEKAFDKIQHPFMIKVLERSGIQGPYLNMIKAIYSKPVANIKVNG 671 Query: 699 QKLEAFPLKTGTRQGCPLSPLLFNIVLEVLARAIRQEKEIE 739 +KLEA PLK+GTRQGCPLSP LFNIVLEVLARAIRQ+KEI+ Sbjct: 672 EKLEAIPLKSGTRQGCPLSPYLFNIVLEVLARAIRQQKEIK 712 >gi|28530221|ref|XP_289916.1| similar to Retrovirus-related POL polyprotein [Mus musculus] Length = 1281 Score = 424 bits (1089), Expect = e-117 Identities = 208/281 (74%), Positives = 241/281 (85%) Query: 459 EIQPTIREYYQHLYANKLENLEEMDKFLNTYTLPRLNQEEVESLNRPVTGSEIVAIINSL 518 EIQ TIR +Y+ LY+ KLENL+EMDKFL+ Y +P+LNQ++V+ LN P++ EI A+INSL Sbjct: 413 EIQNTIRFFYKRLYSTKLENLDEMDKFLDRYQVPKLNQDQVDHLNSPISPKEIEAVINSL 472 Query: 519 PTKKSPGPDGFTAEFYQRYKEELVPFLLKLFQSIENEGILPNLFYEASIILIPKPGRDTT 578 PTKKSPGPDGF+AEFYQ +KE+L+P L KLF IE EG LPN FYEA+I LIPKP +D T Sbjct: 473 PTKKSPGPDGFSAEFYQTFKEDLIPILHKLFHKIEVEGTLPNSFYEATITLIPKPQKDPT 532 Query: 579 KKENFRPISLMNIDAKILNKILANRIQQHIKKLIHHDQVGFIPGMQGWFNIRKSINVIQH 638 K ENFRPISLMNIDAKILNKILANRIQ+HIK +IH DQVGFIPGMQGWFNIRKSINVI + Sbjct: 533 KIENFRPISLMNIDAKILNKILANRIQEHIKAIIHPDQVGFIPGMQGWFNIRKSINVIHY 592 Query: 639 INRTKDKNHMIISIDAEKAFDKIQQRFMLKTLNKLGIDGTYLQIIRAIYDKPTANIILNG 698 IN+ KDKNHMIIS+DAEKAFDKIQ FM+K L + GI G YL +I+AIY KP ANI +NG Sbjct: 593 INKLKDKNHMIISLDAEKAFDKIQHPFMIKVLERSGIQGPYLNMIKAIYSKPVANIKVNG 652 Query: 699 QKLEAFPLKTGTRQGCPLSPLLFNIVLEVLARAIRQEKEIE 739 +KLEA PLK+GTRQGCPLSP LFNIVLEVLARAIRQ+KEI+ Sbjct: 653 EKLEAIPLKSGTRQGCPLSPYLFNIVLEVLARAIRQQKEIK 693 >gi|25024189|ref|XP_204250.1| similar to Retrovirus-related POL polyprotein [Mus musculus] Length = 1281 Score = 424 bits (1089), Expect = e-117 Identities = 208/281 (74%), Positives = 241/281 (85%) Query: 459 EIQPTIREYYQHLYANKLENLEEMDKFLNTYTLPRLNQEEVESLNRPVTGSEIVAIINSL 518 EIQ TIR +Y+ LY+ KLENL+EMDKFL+ Y +P+LNQ++V+ LN P++ EI A+INSL Sbjct: 413 EIQNTIRSFYKSLYSTKLENLDEMDKFLDRYQVPKLNQDQVDLLNSPISPKEIEAVINSL 472 Query: 519 PTKKSPGPDGFTAEFYQRYKEELVPFLLKLFQSIENEGILPNLFYEASIILIPKPGRDTT 578 P KKSPGPDGF+AEFYQ +KE+L+P L KLF IE EG LPN FYEA+I LIPKP +D T Sbjct: 473 PAKKSPGPDGFSAEFYQTFKEDLIPVLHKLFHKIEVEGTLPNSFYEATITLIPKPQKDPT 532 Query: 579 KKENFRPISLMNIDAKILNKILANRIQQHIKKLIHHDQVGFIPGMQGWFNIRKSINVIQH 638 K ENFRPISLMNIDAKILNKILANRIQ+HIK++IH DQVGFIPGMQGWFNIRKSINVI + Sbjct: 533 KIENFRPISLMNIDAKILNKILANRIQEHIKEIIHPDQVGFIPGMQGWFNIRKSINVIHY 592 Query: 639 INRTKDKNHMIISIDAEKAFDKIQQRFMLKTLNKLGIDGTYLQIIRAIYDKPTANIILNG 698 IN+ KDKNHMIIS+DAEKAFDKIQ FM+K L + GI G YL II+AIY KP ANI +NG Sbjct: 593 INKLKDKNHMIISLDAEKAFDKIQHPFMIKVLERSGIQGPYLNIIKAIYSKPVANIKVNG 652 Query: 699 QKLEAFPLKTGTRQGCPLSPLLFNIVLEVLARAIRQEKEIE 739 +KLEA PLK+GTRQGCPLSP LFNIVLEVLARAIRQ+KEI+ Sbjct: 653 EKLEAIPLKSGTRQGCPLSPYLFNIVLEVLARAIRQQKEIK 693 >gi|28476876|ref|XP_204457.2| similar to Retrovirus-related POL polyprotein [Mus musculus] Length = 1281 Score = 424 bits (1089), Expect = e-117 Identities = 207/281 (73%), Positives = 240/281 (85%) Query: 459 EIQPTIREYYQHLYANKLENLEEMDKFLNTYTLPRLNQEEVESLNRPVTGSEIVAIINSL 518 EIQ TIR +Y+ LY+ KLENL+EMDKFL+ Y +P+LNQ++ + LN P++ EI A+INSL Sbjct: 413 EIQNTIRSFYKRLYSTKLENLDEMDKFLDRYQVPKLNQDQADHLNSPISPKEIEAVINSL 472 Query: 519 PTKKSPGPDGFTAEFYQRYKEELVPFLLKLFQSIENEGILPNLFYEASIILIPKPGRDTT 578 PTKKSPGPDGF+AEFYQ +KE+L+P L KLF IE EG LPN FYEA+I LIPKP +D T Sbjct: 473 PTKKSPGPDGFSAEFYQTFKEDLIPILHKLFHKIEVEGTLPNSFYEATITLIPKPQKDPT 532 Query: 579 KKENFRPISLMNIDAKILNKILANRIQQHIKKLIHHDQVGFIPGMQGWFNIRKSINVIQH 638 K ENFRPISLMNIDAKILNKILANRIQ+HIK +IH DQVGFIPGMQGWFNIRKSINVI + Sbjct: 533 KIENFRPISLMNIDAKILNKILANRIQEHIKAIIHPDQVGFIPGMQGWFNIRKSINVIHY 592 Query: 639 INRTKDKNHMIISIDAEKAFDKIQQRFMLKTLNKLGIDGTYLQIIRAIYDKPTANIILNG 698 IN+ KDKNHMIIS+DAEKAFDKIQ FM+K L + GI G YL +I+AIY KP ANI +NG Sbjct: 593 INKLKDKNHMIISLDAEKAFDKIQHPFMIKVLERSGIQGPYLNMIKAIYSKPVANIKVNG 652 Query: 699 QKLEAFPLKTGTRQGCPLSPLLFNIVLEVLARAIRQEKEIE 739 +KLEA PLK+GTRQGCPLSP LFNIVLEVLARAIRQ+KEI+ Sbjct: 653 EKLEAIPLKSGTRQGCPLSPYLFNIVLEVLARAIRQQKEIK 693 >gi|16508044|gb|AAL17970.1| pORF2 [Mus musculus domesticus] Length = 1281 Score = 423 bits (1088), Expect = e-117 Identities = 207/281 (73%), Positives = 241/281 (85%) Query: 459 EIQPTIREYYQHLYANKLENLEEMDKFLNTYTLPRLNQEEVESLNRPVTGSEIVAIINSL 518 EI+ TIR +Y+ LY+ KLENL+EMDKFL+ Y +P+LNQ++V+ LN P++ EI A+INSL Sbjct: 413 EIRNTIRSFYKRLYSTKLENLDEMDKFLDRYQVPKLNQDQVDHLNSPISPKEIEAVINSL 472 Query: 519 PTKKSPGPDGFTAEFYQRYKEELVPFLLKLFQSIENEGILPNLFYEASIILIPKPGRDTT 578 PTKKSPGPDGF+AEFYQ +KE+L+P L KLF IE EG LPN FYEA+I LIPKP +D T Sbjct: 473 PTKKSPGPDGFSAEFYQTFKEDLIPILHKLFHKIEVEGTLPNSFYEATITLIPKPQKDPT 532 Query: 579 KKENFRPISLMNIDAKILNKILANRIQQHIKKLIHHDQVGFIPGMQGWFNIRKSINVIQH 638 K ENFRPISLMNIDAKILNKILANRIQ+HIK +IH DQVGFIPGMQGWFNIRKSINVI + Sbjct: 533 KIENFRPISLMNIDAKILNKILANRIQEHIKAIIHPDQVGFIPGMQGWFNIRKSINVIHY 592 Query: 639 INRTKDKNHMIISIDAEKAFDKIQQRFMLKTLNKLGIDGTYLQIIRAIYDKPTANIILNG 698 IN+ KDKNHMIIS+DAEKAFDKIQ FM+K L + GI G YL +I+AIY KP ANI +NG Sbjct: 593 INKLKDKNHMIISLDAEKAFDKIQHPFMIKVLERSGIQGPYLNMIKAIYSKPVANIKVNG 652 Query: 699 QKLEAFPLKTGTRQGCPLSPLLFNIVLEVLARAIRQEKEIE 739 +KLEA PLK+GTRQGCPLSP LFNIVLEVLARAIRQ+KEI+ Sbjct: 653 EKLEAIPLKSGTRQGCPLSPYLFNIVLEVLARAIRQQKEIK 693 >gi|25046838|ref|XP_207501.1| similar to Retrovirus-related POL polyprotein [Mus musculus] Length = 1785 Score = 423 bits (1087), Expect = e-117 Identities = 208/281 (74%), Positives = 240/281 (85%) Query: 459 EIQPTIREYYQHLYANKLENLEEMDKFLNTYTLPRLNQEEVESLNRPVTGSEIVAIINSL 518 EIQ TIR +Y+ LY+ KLENL+EMDKFL+ Y LP+LNQ++V+ LN P++ EI A+INSL Sbjct: 912 EIQNTIRSFYKRLYSTKLENLDEMDKFLDRYQLPKLNQDQVDHLNSPISPKEIEAVINSL 971 Query: 519 PTKKSPGPDGFTAEFYQRYKEELVPFLLKLFQSIENEGILPNLFYEASIILIPKPGRDTT 578 PTKKSPGPDGF+AEFYQ +KE+L+P L KLF IE EG LPN FYEA+I LIPKP +D T Sbjct: 972 PTKKSPGPDGFSAEFYQTFKEDLIPVLHKLFHKIEVEGTLPNSFYEATITLIPKPQKDPT 1031 Query: 579 KKENFRPISLMNIDAKILNKILANRIQQHIKKLIHHDQVGFIPGMQGWFNIRKSINVIQH 638 K ENFRPISLMNIDAKILNKILA RIQ+HIK +IH DQVGFIPGMQGWFNIRKSINVI + Sbjct: 1032 KIENFRPISLMNIDAKILNKILATRIQEHIKAIIHPDQVGFIPGMQGWFNIRKSINVIHY 1091 Query: 639 INRTKDKNHMIISIDAEKAFDKIQQRFMLKTLNKLGIDGTYLQIIRAIYDKPTANIILNG 698 IN+ KDKNHMIIS+DAEKAFDKIQ FM+K L + GI G YL +I+AIY KP ANI +NG Sbjct: 1092 INKLKDKNHMIISLDAEKAFDKIQHPFMIKVLERSGIQGPYLNMIKAIYSKPVANIKVNG 1151 Query: 699 QKLEAFPLKTGTRQGCPLSPLLFNIVLEVLARAIRQEKEIE 739 +KLEA PLK+GTRQGCPLSP LFNIVLEVLARAIRQ+KEI+ Sbjct: 1152 EKLEAIPLKSGTRQGCPLSPYLFNIVLEVLARAIRQQKEIK 1192 >gi|3599339|gb|AAC72805.1| ORF2 [Mus musculus domesticus] Length = 1252 Score = 422 bits (1086), Expect = e-117 Identities = 208/281 (74%), Positives = 240/281 (85%) Query: 459 EIQPTIREYYQHLYANKLENLEEMDKFLNTYTLPRLNQEEVESLNRPVTGSEIVAIINSL 518 EIQ TIR +Y+ LY+ KLENL+EMDKFL+ Y +P+LNQ++V+ LN P++ EI A+INSL Sbjct: 413 EIQNTIRSFYKRLYSTKLENLDEMDKFLDRYQVPKLNQDQVDLLNSPISPKEIEAVINSL 472 Query: 519 PTKKSPGPDGFTAEFYQRYKEELVPFLLKLFQSIENEGILPNLFYEASIILIPKPGRDTT 578 P KKSPGPDGF+AEFYQ +KE+L P L KLF IE EGILPN FYEA+I LIPKP +D T Sbjct: 473 PAKKSPGPDGFSAEFYQTFKEDLTPVLHKLFHKIEVEGILPNSFYEATITLIPKPQKDPT 532 Query: 579 KKENFRPISLMNIDAKILNKILANRIQQHIKKLIHHDQVGFIPGMQGWFNIRKSINVIQH 638 K ENFRPISLMNIDAKILNKILANRIQ+HIK +IH DQVGFIPGMQGWFNIRKSINVI + Sbjct: 533 KIENFRPISLMNIDAKILNKILANRIQEHIKAIIHPDQVGFIPGMQGWFNIRKSINVIHY 592 Query: 639 INRTKDKNHMIISIDAEKAFDKIQQRFMLKTLNKLGIDGTYLQIIRAIYDKPTANIILNG 698 IN+ KDKNHMIIS+DAEKAFDKIQ FM+K L + GI G YL +I+AIY KP ANI +NG Sbjct: 593 INKLKDKNHMIISLDAEKAFDKIQHPFMIKVLERSGIQGQYLNMIKAIYSKPVANIKVNG 652 Query: 699 QKLEAFPLKTGTRQGCPLSPLLFNIVLEVLARAIRQEKEIE 739 +KLEA PLK+GTRQGCPLSP LFNIVLEVLARAIRQ+KEI+ Sbjct: 653 EKLEAIPLKSGTRQGCPLSPYLFNIVLEVLARAIRQQKEIK 693 >gi|25029893|ref|XP_207243.1| similar to ORF2 [Mus musculus domesticus] Length = 1219 Score = 422 bits (1086), Expect = e-117 Identities = 208/281 (74%), Positives = 240/281 (85%) Query: 459 EIQPTIREYYQHLYANKLENLEEMDKFLNTYTLPRLNQEEVESLNRPVTGSEIVAIINSL 518 EIQ TIR +Y+ LY+ KLENL+EMDKFL+ Y +P+LNQ++V+ LN P++ EI A+INSL Sbjct: 351 EIQNTIRSFYKRLYSTKLENLDEMDKFLDRYQVPKLNQDQVDLLNSPISPKEIEAVINSL 410 Query: 519 PTKKSPGPDGFTAEFYQRYKEELVPFLLKLFQSIENEGILPNLFYEASIILIPKPGRDTT 578 P KKSPGPDGF+AEFYQ +KE+L P L KLF IE EGILPN FYEA+I LIPKP +D T Sbjct: 411 PAKKSPGPDGFSAEFYQTFKEDLTPVLHKLFHKIEVEGILPNSFYEATITLIPKPQKDPT 470 Query: 579 KKENFRPISLMNIDAKILNKILANRIQQHIKKLIHHDQVGFIPGMQGWFNIRKSINVIQH 638 K ENFRPISLMNIDAKILNKILANRIQ+HIK +IH DQVGFIPGMQGWFNIRKSINVI + Sbjct: 471 KIENFRPISLMNIDAKILNKILANRIQEHIKAIIHPDQVGFIPGMQGWFNIRKSINVIHY 530 Query: 639 INRTKDKNHMIISIDAEKAFDKIQQRFMLKTLNKLGIDGTYLQIIRAIYDKPTANIILNG 698 IN+ KDKNHMIIS+DAEKAFDKIQ FM+K L + GI G YL +I+AIY KP ANI +NG Sbjct: 531 INKLKDKNHMIISLDAEKAFDKIQHPFMIKVLERSGIQGQYLNMIKAIYSKPVANIKVNG 590 Query: 699 QKLEAFPLKTGTRQGCPLSPLLFNIVLEVLARAIRQEKEIE 739 +KLEA PLK+GTRQGCPLSP LFNIVLEVLARAIRQ+KEI+ Sbjct: 591 EKLEAIPLKSGTRQGCPLSPYLFNIVLEVLARAIRQQKEIK 631 >gi|25019768|ref|XP_203729.1| similar to ORF2 [Mus musculus domesticus] Length = 1281 Score = 422 bits (1086), Expect = e-117 Identities = 208/281 (74%), Positives = 240/281 (85%) Query: 459 EIQPTIREYYQHLYANKLENLEEMDKFLNTYTLPRLNQEEVESLNRPVTGSEIVAIINSL 518 EIQ TIR +Y+ LY+ KLENL+EMDKFL+ Y +P+LNQ++V+ LN P++ EI A+INSL Sbjct: 413 EIQNTIRSFYKRLYSTKLENLDEMDKFLDRYQVPKLNQDQVDLLNSPISPKEIEAVINSL 472 Query: 519 PTKKSPGPDGFTAEFYQRYKEELVPFLLKLFQSIENEGILPNLFYEASIILIPKPGRDTT 578 P KKSPGPDGF+AEFYQ +KE+L P L KLF IE EGILPN FYEA+I LIPKP +D T Sbjct: 473 PAKKSPGPDGFSAEFYQTFKEDLTPVLHKLFHKIEVEGILPNSFYEATITLIPKPQKDPT 532 Query: 579 KKENFRPISLMNIDAKILNKILANRIQQHIKKLIHHDQVGFIPGMQGWFNIRKSINVIQH 638 K ENFRPISLMNIDAKILNKILANRIQ+HIK +IH DQVGFIPGMQGWFNIRKSINVI + Sbjct: 533 KIENFRPISLMNIDAKILNKILANRIQEHIKAIIHPDQVGFIPGMQGWFNIRKSINVIHY 592 Query: 639 INRTKDKNHMIISIDAEKAFDKIQQRFMLKTLNKLGIDGTYLQIIRAIYDKPTANIILNG 698 IN+ KDKNHMIIS+DAEKAFDKIQ FM+K L + GI G YL +I+AIY KP ANI +NG Sbjct: 593 INKLKDKNHMIISLDAEKAFDKIQHPFMIKVLERSGIQGQYLNMIKAIYSKPVANIKVNG 652 Query: 699 QKLEAFPLKTGTRQGCPLSPLLFNIVLEVLARAIRQEKEIE 739 +KLEA PLK+GTRQGCPLSP LFNIVLEVLARAIRQ+KEI+ Sbjct: 653 EKLEAIPLKSGTRQGCPLSPYLFNIVLEVLARAIRQQKEIK 693 >gi|3599326|gb|AAC72797.1| ORF2 [Mus musculus domesticus] Length = 1281 Score = 422 bits (1086), Expect = e-117 Identities = 208/281 (74%), Positives = 240/281 (85%) Query: 459 EIQPTIREYYQHLYANKLENLEEMDKFLNTYTLPRLNQEEVESLNRPVTGSEIVAIINSL 518 EIQ TIR +Y+ LY+ KLENL+EMDKFL+ Y +P+LNQ++V+ LN P++ EI A+INSL Sbjct: 413 EIQNTIRSFYKRLYSTKLENLDEMDKFLDRYQVPKLNQDQVDLLNSPISPKEIEAVINSL 472 Query: 519 PTKKSPGPDGFTAEFYQRYKEELVPFLLKLFQSIENEGILPNLFYEASIILIPKPGRDTT 578 P KKSPGPDGF+AEFYQ +KE+L P L KLF IE EGILPN FYEA+I LIPKP +D T Sbjct: 473 PAKKSPGPDGFSAEFYQTFKEDLTPVLHKLFHKIEVEGILPNSFYEATITLIPKPQKDPT 532 Query: 579 KKENFRPISLMNIDAKILNKILANRIQQHIKKLIHHDQVGFIPGMQGWFNIRKSINVIQH 638 K ENFRPISLMNIDAKILNKILANRIQ+HIK +IH DQVGFIPGMQGWFNIRKSINVI + Sbjct: 533 KIENFRPISLMNIDAKILNKILANRIQEHIKAIIHPDQVGFIPGMQGWFNIRKSINVIHY 592 Query: 639 INRTKDKNHMIISIDAEKAFDKIQQRFMLKTLNKLGIDGTYLQIIRAIYDKPTANIILNG 698 IN+ KDKNHMIIS+DAEKAFDKIQ FM+K L + GI G YL +I+AIY KP ANI +NG Sbjct: 593 INKLKDKNHMIISLDAEKAFDKIQHPFMIKVLERSGIQGQYLNMIKAIYSKPVANIKVNG 652 Query: 699 QKLEAFPLKTGTRQGCPLSPLLFNIVLEVLARAIRQEKEIE 739 +KLEA PLK+GTRQGCPLSP LFNIVLEVLARAIRQ+KEI+ Sbjct: 653 EKLEAIPLKSGTRQGCPLSPYLFNIVLEVLARAIRQQKEIK 693 >gi|25029572|ref|XP_203692.1| similar to ORF2 [Mus musculus domesticus] Length = 1281 Score = 422 bits (1086), Expect = e-117 Identities = 208/281 (74%), Positives = 240/281 (85%) Query: 459 EIQPTIREYYQHLYANKLENLEEMDKFLNTYTLPRLNQEEVESLNRPVTGSEIVAIINSL 518 EIQ TIR +Y+ LY+ KLENL+EMDKFL+ Y +P+LNQ++V+ LN P++ EI A+INSL Sbjct: 413 EIQNTIRSFYKRLYSTKLENLDEMDKFLDRYQVPKLNQDQVDLLNSPISPKEIEAVINSL 472 Query: 519 PTKKSPGPDGFTAEFYQRYKEELVPFLLKLFQSIENEGILPNLFYEASIILIPKPGRDTT 578 P KKSPGPDGF+AEFYQ +KE+L P L KLF IE EGILPN FYEA+I LIPKP +D T Sbjct: 473 PAKKSPGPDGFSAEFYQTFKEDLTPVLHKLFHKIEVEGILPNSFYEATITLIPKPQKDPT 532 Query: 579 KKENFRPISLMNIDAKILNKILANRIQQHIKKLIHHDQVGFIPGMQGWFNIRKSINVIQH 638 K ENFRPISLMNIDAKILNKILANRIQ+HIK +IH DQVGFIPGMQGWFNIRKSINVI + Sbjct: 533 KIENFRPISLMNIDAKILNKILANRIQEHIKAIIHPDQVGFIPGMQGWFNIRKSINVIHY 592 Query: 639 INRTKDKNHMIISIDAEKAFDKIQQRFMLKTLNKLGIDGTYLQIIRAIYDKPTANIILNG 698 IN+ KDKNHMIIS+DAEKAFDKIQ FM+K L + GI G YL +I+AIY KP ANI +NG Sbjct: 593 INKLKDKNHMIISLDAEKAFDKIQHPFMIKVLERSGIQGQYLNMIKAIYSKPVANIKVNG 652 Query: 699 QKLEAFPLKTGTRQGCPLSPLLFNIVLEVLARAIRQEKEIE 739 +KLEA PLK+GTRQGCPLSP LFNIVLEVLARAIRQ+KEI+ Sbjct: 653 EKLEAIPLKSGTRQGCPLSPYLFNIVLEVLARAIRQQKEIK 693 >gi|2731767|gb|AAC53542.1| endonuclease/reverse transcriptase [Mus musculus] gi|3599334|gb|AAC72802.1| ORF2 [Mus musculus domesticus] Length = 1281 Score = 422 bits (1086), Expect = e-117 Identities = 208/281 (74%), Positives = 240/281 (85%) Query: 459 EIQPTIREYYQHLYANKLENLEEMDKFLNTYTLPRLNQEEVESLNRPVTGSEIVAIINSL 518 EIQ TIR +Y+ LY+ KLENL+EMDKFL+ Y +P+LNQ++V+ LN P++ EI A+INSL Sbjct: 413 EIQNTIRSFYKRLYSTKLENLDEMDKFLDRYQVPKLNQDQVDLLNSPISPKEIEAVINSL 472 Query: 519 PTKKSPGPDGFTAEFYQRYKEELVPFLLKLFQSIENEGILPNLFYEASIILIPKPGRDTT 578 P KKSPGPDGF+AEFYQ +KE+L P L KLF IE EGILPN FYEA+I LIPKP +D T Sbjct: 473 PAKKSPGPDGFSAEFYQTFKEDLTPVLHKLFHKIEVEGILPNSFYEATITLIPKPQKDPT 532 Query: 579 KKENFRPISLMNIDAKILNKILANRIQQHIKKLIHHDQVGFIPGMQGWFNIRKSINVIQH 638 K ENFRPISLMNIDAKILNKILANRIQ+HIK +IH DQVGFIPGMQGWFNIRKSINVI + Sbjct: 533 KIENFRPISLMNIDAKILNKILANRIQEHIKAIIHPDQVGFIPGMQGWFNIRKSINVIHY 592 Query: 639 INRTKDKNHMIISIDAEKAFDKIQQRFMLKTLNKLGIDGTYLQIIRAIYDKPTANIILNG 698 IN+ KDKNHMIIS+DAEKAFDKIQ FM+K L + GI G YL +I+AIY KP ANI +NG Sbjct: 593 INKLKDKNHMIISLDAEKAFDKIQHPFMIKVLERSGIQGQYLNMIKAIYSKPVANIKVNG 652 Query: 699 QKLEAFPLKTGTRQGCPLSPLLFNIVLEVLARAIRQEKEIE 739 +KLEA PLK+GTRQGCPLSP LFNIVLEVLARAIRQ+KEI+ Sbjct: 653 EKLEAIPLKSGTRQGCPLSPYLFNIVLEVLARAIRQQKEIK 693 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 9, 2003 2:42 AM Number of letters in database: 436,601,001 Number of sequences in database: 1,363,684 Lambda K H 0.321 0.138 0.406 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 623,830,626 Number of Sequences: 1363684 Number of extensions: 25880727 Number of successful extensions: 60386 Number of sequences better than 10.0: 1053 Number of HSP's better than 10.0 without gapping: 824 Number of HSP's successfully gapped in prelim test: 229 Number of HSP's that attempted gapping in prelim test: 58570 Number of HSP's gapped (non-prelim): 1204 length of query: 750 length of database: 436,601,001 effective HSP length: 131 effective length of query: 619 effective length of database: 257,958,397 effective search space: 159676247743 effective search space used: 159676247743 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 77 (34.3 bits)