## date Fri Mar 14 19:21:31 2003 ## source-version: geneid v 1.1 -- geneid@imim.es # Sequence hg13_dna - Length = 604198 bps # Optimal Gene Structure. 3 genes. Score = 1870.327010 # Gene 1 (Forward). 6 exons. 1047 aa. Score = 67.760989 Internal 122327 124813 55.23 + 0 0 6.17 3.21 137.73 0.00 AA 1:829 hg13_dna_1 Internal 127361 127564 4.06 + 0 0 2.83 3.87 13.86 0.00 AA 830:897 hg13_dna_1 Internal 143132 143188 0.26 + 0 0 2.90 6.11 0.90 0.00 AA 898:916 hg13_dna_1 Internal 155527 155602 3.39 + 0 1 4.26 6.29 6.40 0.00 AA 917:942 hg13_dna_1 Internal 180609 180745 1.30 + 2 0 5.61 1.26 6.69 0.00 AA 942:987 hg13_dna_1 Terminal 202386 202565 3.52 + 0 0 3.03 0.00 18.01 0.00 AA 988:1047 hg13_dna_1 >hg13_dna_1|geneid_v1.1_predicted_protein_1|1047_AA DGTKQKRERKKTVSFSSMPTEKKISSASDCINSMVEGSELKKVRSNSRIYHRYFLLDADM QSLRWEPSKKDSEKAKIDIKSIKEVRTGKNTDIFRSNGISDQISEDCAFSVIYGENYESL DLVANSADVANIWVTGLRYLISYGKHTLDMLESSQDNMRTSWVSQMFSEIDVDNLGHITL CNAVQCIRNLNPGLKTSKIELKFKELHKSKDKAGTEVTKEEFIEVFHELCTRPEIYFLLV QFSSNKEFLDTKDLMMFLEAEQGVAHINEEISLEIIHKYEPSKEGQEKGWLSIDGFTNYL MSPDCYIFDPEHKKVCQDMKQPLSHYFINSSHNTYLIEDQFRGPSDITGYIRALKMGCRS VELDVWDGPDNEPVIYTGHTMTSQIVFRSVIDIINKYAFFASEYPLILCLENHCSIKQQK VMVQHMKKLLGDKLYTTSPNVEESYLPSPDVLKGKILIKAKKLSSNCSGVEGDVTDEDEG AEMSQRMGKENMEQPNNVPVKRFQLCKELSELVSICKSVQFKEFQVSFQVQKYWEVCSFN EVLASKYANENPGDFVNYNKRFLARVFPSPMRIDSSNMNPQDFWKCGCQIVAMNFQTPGL MMDLNIGWFRQNGNCGYVLRPAIMREEVSFFSANTKDSVPGVSPQLLHIKIISGQNFPKP KGSGAKGDVVDPYVYVEIHGIPADCAEQRTKTVHQNGDAPIFDESFEFQINLPELAMVRF VVLDDDYIGDEFIGQYTIPFECLQTGYRHVPLQSLTGEVLAHASLFVHVAITNRRGGGKP HKRGLSVRKGKKSREYASLRTLWIKTVDEVFKNAQPPIRDATDLRENMQNAVVSFKELCG LSSVANLMQCMLAVSPRFLGPDNTPLVVLNLSEQYPTMELQGIVPEVLKKIVTTYDMSMI TPFHKVRFKVQNEKQKMIQSLKALIENADAVYEKIVHCQKAAMEFHEHLHSIGTKEGLKE RKLQKAVESFTWNITILKVSIELFLMLGQADLLKYAKNETLENLKQIHFAAVSCGLNKPG TENADVQKPRRSLEVIPEKANDETGE* # Gene 2 (Reverse). 3 exons. 101 aa. Score = 0.414348 Terminal 271142 271262 0.29 - 1 0 0.00 2.54 2.27 2.86 AA 61:101 hg13_dna_2 Internal 271853 272000 1.83 - 2 2 2.88 1.97 0.86 3.58 AA 12: 61 hg13_dna_2 First 272079 272112 -1.71 - 0 1 1.18 2.53 0.61 0.82 AA 1: 12 hg13_dna_2 >hg13_dna_2|geneid_v1.1_predicted_protein_2|101_AA MARQPGSGGLHDKCDNDMISHLPSKKMVTHSQVSYCREGSNWFCNLLLNSSRELSSYHIS IKLTTSLEERDIQGQWVMGSTSLKFPQAHTQTIVLLPYVF* # Gene 3 (Reverse). 21 exons. 826 aa. Score = 1802.151673 Terminal 273616 273909 10.45 - 0 0 0.00 3.34 16.00 7.05 AA 729:826 hg13_dna_3 Internal 279420 279581 100.99 - 0 0 1.06 3.48 9.40 100.00 AA 675:728 hg13_dna_3 Internal 280402 280481 100.84 - 2 0 4.14 3.51 3.13 100.00 AA 648:674 hg13_dna_3 Internal 297762 297861 103.56 - 0 1 3.66 4.82 9.94 100.00 AA 615:648 hg13_dna_3 Internal 326860 327023 99.96 - 2 0 0.68 5.14 4.92 100.00 AA 560:614 hg13_dna_3 Internal 350816 351072 102.67 - 1 1 3.54 5.91 6.24 100.00 AA 474:560 hg13_dna_3 Internal 371159 371244 100.74 - 0 2 4.80 2.91 4.03 100.00 AA 446:474 hg13_dna_3 Internal 404548 404654 99.79 - 2 0 5.26 4.08 -0.77 100.00 AA 410:445 hg13_dna_3 Internal 420645 420787 101.46 - 1 1 2.21 6.03 5.04 100.00 AA 362:410 hg13_dna_3 Internal 453308 453348 -0.99 - 0 2 2.21 3.90 2.10 0.00 AA 349:362 hg13_dna_3 Internal 464568 464640 -0.22 - 1 0 1.98 5.82 1.49 0.00 AA 324:348 hg13_dna_3 Internal 484728 484900 102.68 - 0 2 1.42 5.67 9.81 100.00 AA 267:324 hg13_dna_3 Internal 487124 487193 100.43 - 1 0 3.63 3.54 4.07 100.00 AA 243:266 hg13_dna_3 Internal 487282 487403 95.59 - 0 2 2.73 -0.33 -0.89 100.00 AA 203:243 hg13_dna_3 Internal 489174 489266 92.58 - 0 0 -4.24 5.16 1.81 96.80 AA 172:202 hg13_dna_3 Internal 496566 496668 102.88 - 1 0 2.87 6.38 7.07 100.00 AA 137:171 hg13_dna_3 Internal 515834 515901 100.98 - 0 2 2.06 3.80 7.42 100.00 AA 115:137 hg13_dna_3 Internal 517347 517421 99.28 - 0 0 0.84 4.70 3.66 100.00 AA 90:114 hg13_dna_3 Internal 517525 517614 99.30 - 0 0 2.55 4.18 1.91 100.00 AA 60: 89 hg13_dna_3 Internal 519071 519179 101.22 - 1 0 5.20 3.12 4.33 100.00 AA 23: 59 hg13_dna_3 Internal 541103 541172 87.96 - 2 2 3.29 3.49 2.11 88.55 AA 1: 23 hg13_dna_3 >hg13_dna_3|geneid_v1.1_predicted_protein_3|826_AA gaDSNKNGRRTSSTLDSEGTFNSYRKEWEELFVNNNYLATIRQKGINGQLRSSRFRSICW KLFLCVLPQDKSQWISRIEELRAWYSNIKEIHITNPRKVVGQQDLMINNPLSQDEGSLWN KFFQDKELRSMIEQDVKRTFPEMQFFQQENVRKILTDVLFCYARENEQLLYKQGMHELLA PIVFVLHCDHQAFLHASESAQPRQNKANSASLIIQKLHILIACIAFLSEEMKTVLNPEYL EHDAYAVFSQLMETAEPWFSTFEHDGQKGKETLMTPIPFARPQDLGPTIAIVTKVNQIQD HLLKKHDIELYMHLNRLEIAPQIYGLLDETLDETLFEGFFGGKKKRIQKRLPLEEFGNSK GQHLRWVRLLFGREFPLQDLLVVWDALFADGLSLGLVDYIFVAMLLYIRDALISSNYQTC LGLLMHYPFIGDVHSLILKALFLRDPKRNPRPVTYQFHPNLDYYKARGADLMNKSRTNAK GAPLNINKVSNSLINFGRKLISPAMAPGSAGGPVPGGNSSSSSSVVIPTRTSAEAPSHHL QQQQQQQRLMKSESMPVQLNKGLSSKNISSSPSVESLPGGREFTGSPPSSATKKDSFFSN ISRSRSHSKTMGRKESEEELEAQISFLQGQLNDLDAMCKYCAKVMDTHLVNIQDVILQEN LEKEDQILVSLAGLKQIKDILKGSLRFNQSQLEAEENEQITIADNHYCSSGQGQGRGQGQ SVQMSGAIKQASSETPGCTDRGNSDDFILISKDDDGSSARGSFSGQAQPLRTLRSTSGKS QAPVCSPLVFSDPLMGPASASSSNPSSSPDDDSSKDSGFTIVSPLDI*