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MatInspector Result
MatInspector Release public domain January 2000 Tue Mar 11 17:11:51 2003
Solution parameters:
~~~~~~~~~~~~~~~~~~~~
sequence file: Promotorsdelgenpredit_1.seq
core sim: 1.00
matrix sim: 0.90
Explanation for column output:
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-> Matrix positions correspond to sense strand numbering, but all
sequences are given in 5'-3' direction.
-> n/a in column 'core simil.' indicates, that no core search
was conducted.
-> Capital letters within the sequence indicate the core string.
Matrix | Position(str)| Core | Matrix | Sequence
Name | of Matrix | Simil. | Simil. |
-----------------------------------------------------------------------
Inspecting sequence Promotorsdelgenpredi [?] (1 - 539):
V$NFAT_Q6 | 39 (+) | 1.000 | 0.947 | nttagGAAAtct
V$OCT1_01 | 49 (-) | 1.000 | 0.976 | tgttaTATGcaaatgaaag
V$OCT1_05 | 51 (+) | 1.000 | 0.944 | ttcatttGCATata
V$OCT_C | 51 (+) | 1.000 | 0.984 | ttcATTTGcatat
V$OCT1_Q6 | 51 (-) | 1.000 | 0.961 | ttatatgcAAATgaa
V$OCT1_02 | 53 (-) | 1.000 | 0.906 | tgttatATGCaaatg
V$DELTAEF1_01 | 63 (+) | 1.000 | 0.938 | taacACCTcta
V$BRN2_01 | 86 (-) | 1.000 | 0.900 | caaatctcAAATccac
V$S8_01 | 107 (+) | 1.000 | 0.951 | atttttaaATTActca
V$S8_01 | 120 (-) | 1.000 | 0.947 | tttgcaaaATTAatga
V$CEBPB_01 | 124 (+) | 1.000 | 0.951 | taattttGCAAagt
V$OCT1_02 | 147 (-) | 1.000 | 0.970 | tataatATGCattgc
V$GATA1_02 | 166 (+) | 1.000 | 0.941 | tttgaGATAattgt
V$GATA1_03 | 166 (+) | 1.000 | 0.952 | tttgaGATAattgt
V$GATA1_04 | 167 (+) | 1.000 | 0.953 | ttgaGATAattgt
V$GATA3_02 | 168 (+) | 1.000 | 0.940 | tgaGATAatt
V$GATA2_02 | 168 (+) | 1.000 | 0.931 | tgaGATAatt
V$GATA1_06 | 168 (+) | 1.000 | 0.905 | tgaGATAatt
V$LMO2COM_02 | 169 (+) | 1.000 | 0.918 | gaGATAatt
V$S8_01 | 169 (-) | 1.000 | 0.976 | taattacaATTAtctc
V$GATA_C | 170 (+) | 1.000 | 0.921 | aGATAAttgta
V$NKX25_02 | 171 (+) | 1.000 | 0.907 | gaTAATtg
V$S8_01 | 173 (+) | 1.000 | 0.974 | taattgtaATTAtttt
V$S8_01 | 175 (-) | 1.000 | 0.972 | ttaaaataATTAcaat
V$NKX25_01 | 243 (+) | 1.000 | 0.946 | acAAGTg
V$IK2_01 | 312 (-) | 1.000 | 0.908 | aaggGGGAtgtc
V$MZF1_01 | 316 (-) | 1.000 | 0.969 | aagGGGGa
V$IK2_01 | 332 (-) | 1.000 | 0.939 | caaaGGGAacac
V$AP4_Q5 | 380 (+) | 1.000 | 0.923 | caCAGCtccg
V$VMYB_01 | 385 (-) | 1.000 | 0.982 | aatAACGgag
V$VMYB_02 | 386 (-) | 1.000 | 0.975 | aatAACGga
V$IK2_01 | 406 (-) | 1.000 | 0.912 | aatgGGGAttat
V$MZF1_01 | 410 (-) | 1.000 | 0.979 | aatGGGGa
V$OCT1_Q6 | 412 (-) | 1.000 | 0.935 | agagatgcAAATggg
V$IK2_01 | 423 (-) | 1.000 | 0.918 | aatgGGGAagag
V$MZF1_01 | 427 (-) | 1.000 | 0.979 | aatGGGGa
V$GATA1_03 | 456 (+) | 1.000 | 0.920 | gatgaGATAggtga
V$GATA1_02 | 456 (+) | 1.000 | 0.963 | gatgaGATAggtga
V$GATA1_04 | 457 (+) | 1.000 | 0.955 | atgaGATAggtga
V$LMO2COM_02 | 459 (+) | 1.000 | 0.944 | gaGATAggt
V$DELTAEF1_01 | 461 (-) | 1.000 | 0.964 | tctcACCTatc
V$GFI1_01 | 490 (-) | 1.000 | 0.928 | gattctccAATCtcagctcttgcc
V$AP4_Q6 | 493 (-) | 1.000 | 0.900 | ctCAGCtctt
V$AP4_Q5 | 493 (-) | 1.000 | 0.943 | ctCAGCtctt
V$NFY_Q6 | 500 (-) | 1.000 | 0.910 | tctCCAAtctc
V$S8_01 | 509 (+) | 1.000 | 0.940 | gaatctgaATTAgagt
V$TST1_01 | 512 (+) | 1.000 | 0.955 | tctgAATTagagtgt
V$DELTAEF1_01 | 528 (-) | 1.000 | 0.956 | acacACCTttg
A total of 539 basepairs was scanned.
Statistics:
~~~~~~~~~~~~~~~~~~
In 0 seq. 0 matches to V$AHRARNT_01 (re: 0.81) were found.
In 0 seq. 0 matches to V$AHRARNT_02 (re: < 0.01) were found.
In 0 seq. 0 matches to V$AHR_01 (re: < 0.01) were found.
In 0 seq. 0 matches to V$AP1FJ_Q2 (re: 2.45) were found.
In 0 seq. 0 matches to V$AP1_C (re: 1.08) were found.
In 0 seq. 0 matches to V$AP1_Q2 (re: 1.82) were found.
In 0 seq. 0 matches to V$AP1_Q4 (re: 2.48) were found.
In 0 seq. 0 matches to V$AP2_Q6 (re: 4.78) were found.
In 0 seq. 0 matches to V$AP4_01 (re: 0.01) were found.
In 1 seq. 2 matches to V$AP4_Q5 (re: 0.96) were found.
In 1 seq. 1 matches to V$AP4_Q6 (re: 0.50) were found.
In 0 seq. 0 matches to V$ARNT_01 (re: 0.69) were found.
In 0 seq. 0 matches to V$ARP1_01 (re: 0.07) were found.
In 0 seq. 0 matches to V$ATF_01 (re: 0.34) were found.
In 0 seq. 0 matches to V$BARBIE_01 (re: 0.56) were found.
In 0 seq. 0 matches to V$BRACH_01 (re: < 0.01) were found.
In 1 seq. 1 matches to V$BRN2_01 (re: 0.99) were found.
In 0 seq. 0 matches to V$CAAT_01 (re: 2.21) were found.
In 0 seq. 0 matches to V$CAAT_C (re: < 0.01) were found.
In 0 seq. 0 matches to V$CDPCR3HD_01 (re: 3.06) were found.
In 0 seq. 0 matches to V$CDPCR3_01 (re: 0.12) were found.
In 0 seq. 0 matches to V$CDP_01 (re: 0.04) were found.
In 0 seq. 0 matches to V$CDP_02 (re: 0.12) were found.
In 1 seq. 1 matches to V$CEBPB_01 (re: 2.07) were found.
In 0 seq. 0 matches to V$CEBP_C (re: 0.27) were found.
In 0 seq. 0 matches to V$CETS1P54_01 (re: 1.53) were found.
In 0 seq. 0 matches to V$CHOP_01 (re: 1.10) were found.
In 0 seq. 0 matches to V$CLOX_01 (re: 0.12) were found.
In 0 seq. 0 matches to V$CMYB_01 (re: 2.02) were found.
In 0 seq. 0 matches to V$COMP1_01 (re: 0.66) were found.
In 0 seq. 0 matches to V$COUP_01 (re: 0.19) were found.
In 0 seq. 0 matches to V$CP2_01 (re: 0.39) were found.
In 0 seq. 0 matches to V$CREBP1CJUN_01 (re: 0.22) were found.
In 0 seq. 0 matches to V$CREBP1_01 (re: 0.15) were found.
In 0 seq. 0 matches to V$CREBP1_Q2 (re: 0.09) were found.
In 0 seq. 0 matches to V$CREB_01 (re: 0.40) were found.
In 0 seq. 0 matches to V$CREB_02 (re: 1.12) were found.
In 0 seq. 0 matches to V$CREB_Q2 (re: 0.34) were found.
In 0 seq. 0 matches to V$CREB_Q4 (re: 0.34) were found.
In 0 seq. 0 matches to V$CREL_01 (re: 2.74) were found.
In 1 seq. 3 matches to V$DELTAEF1_01 (re: 2.42) were found.
In 0 seq. 0 matches to V$E2F_01 (re: < 0.01) were found.
In 0 seq. 0 matches to V$E2F_02 (re: 0.13) were found.
In 0 seq. 0 matches to V$E2F_Q6 (re: 0.06) were found.
In 0 seq. 0 matches to V$E2_01 (re: 0.29) were found.
In 0 seq. 0 matches to V$E2_Q6 (re: 0.40) were found.
In 0 seq. 0 matches to V$E47_01 (re: 0.11) were found.
In 0 seq. 0 matches to V$E47_02 (re: 0.27) were found.
In 0 seq. 0 matches to V$E4BP4_01 (re: 0.07) were found.
In 0 seq. 0 matches to V$EGR1_01 (re: 0.03) were found.
In 0 seq. 0 matches to V$EGR2_01 (re: 0.03) were found.
In 0 seq. 0 matches to V$EGR3_01 (re: 0.01) were found.
In 0 seq. 0 matches to V$ELK1_01 (re: 0.06) were found.
In 0 seq. 0 matches to V$ER_Q6 (re: 1.73) were found.
In 0 seq. 0 matches to V$EVI1_01 (re: < 0.01) were found.
In 0 seq. 0 matches to V$EVI1_02 (re: 0.02) were found.
In 0 seq. 0 matches to V$EVI1_03 (re: < 0.01) were found.
In 0 seq. 0 matches to V$EVI1_04 (re: 0.92) were found.
In 0 seq. 0 matches to V$EVI1_05 (re: 0.16) were found.
In 0 seq. 0 matches to V$EVI1_06 (re: 0.02) were found.
In 0 seq. 0 matches to V$FREAC2_01 (re: 0.11) were found.
In 0 seq. 0 matches to V$FREAC3_01 (re: 0.02) were found.
In 0 seq. 0 matches to V$FREAC4_01 (re: < 0.01) were found.
In 0 seq. 0 matches to V$FREAC7_01 (re: 0.52) were found.
In 1 seq. 2 matches to V$GATA1_02 (re: 2.27) were found.
In 1 seq. 2 matches to V$GATA1_03 (re: 1.80) were found.
In 1 seq. 2 matches to V$GATA1_04 (re: 1.82) were found.
In 0 seq. 0 matches to V$GATA1_05 (re: 0.42) were found.
In 1 seq. 1 matches to V$GATA1_06 (re: 0.52) were found.
In 1 seq. 1 matches to V$GATA2_02 (re: 1.02) were found.
In 0 seq. 0 matches to V$GATA2_03 (re: 0.74) were found.
In 1 seq. 1 matches to V$GATA3_02 (re: 2.85) were found.
In 0 seq. 0 matches to V$GATA3_03 (re: 2.01) were found.
In 1 seq. 1 matches to V$GATA_C (re: 2.62) were found.
In 0 seq. 0 matches to V$GC_01 (re: 2.12) were found.
In 1 seq. 1 matches to V$GFI1_01 (re: 1.57) were found.
In 0 seq. 0 matches to V$GKLF_01 (re: 4.76) were found.
In 0 seq. 0 matches to V$GRE_C (re: 0.06) were found.
In 0 seq. 0 matches to V$HEN1_01 (re: 0.12) were found.
In 0 seq. 0 matches to V$HEN1_02 (re: 0.07) were found.
In 0 seq. 0 matches to V$HFH1_01 (re: 0.12) were found.
In 0 seq. 0 matches to V$HFH2_01 (re: 2.03) were found.
In 0 seq. 0 matches to V$HFH3_01 (re: 0.31) were found.
In 0 seq. 0 matches to V$HFH8_01 (re: 0.23) were found.
In 0 seq. 0 matches to V$HLF_01 (re: 1.69) were found.
In 0 seq. 0 matches to V$HNF1_01 (re: 0.51) were found.
In 0 seq. 0 matches to V$HNF1_C (re: 0.11) were found.
In 0 seq. 0 matches to V$HNF3B_01 (re: 1.45) were found.
In 0 seq. 0 matches to V$HOX13_01 (re: 0.02) were found.
In 0 seq. 0 matches to V$IK1_01 (re: 0.86) were found.
In 1 seq. 4 matches to V$IK2_01 (re: 3.95) were found.
In 0 seq. 0 matches to V$IK3_01 (re: 0.16) were found.
In 0 seq. 0 matches to V$IRF1_01 (re: 0.03) were found.
In 0 seq. 0 matches to V$IRF2_01 (re: < 0.01) were found.
In 0 seq. 0 matches to V$ISRE_01 (re: < 0.01) were found.
In 0 seq. 0 matches to V$LMO2COM_01 (re: 1.11) were found.
In 1 seq. 2 matches to V$LMO2COM_02 (re: 2.02) were found.
In 0 seq. 0 matches to V$LYF1_01 (re: 4.29) were found.
In 0 seq. 0 matches to V$MAX_01 (re: 0.11) were found.
In 0 seq. 0 matches to V$MEF2_01 (re: < 0.01) were found.
In 0 seq. 0 matches to V$MEF2_02 (re: 0.08) were found.
In 0 seq. 0 matches to V$MEF2_03 (re: 0.02) were found.
In 0 seq. 0 matches to V$MEF2_04 (re: < 0.01) were found.
In 0 seq. 0 matches to V$MIF1_01 (re: 0.01) were found.
In 0 seq. 0 matches to V$MYCMAX_01 (re: 0.05) were found.
In 0 seq. 0 matches to V$MYCMAX_02 (re: 1.67) were found.
In 0 seq. 0 matches to V$MYOD_01 (re: 0.21) were found.
In 0 seq. 0 matches to V$MYOD_Q6 (re: 0.96) were found.
In 0 seq. 0 matches to V$MYOGNF1_01 (re: < 0.01) were found.
In 1 seq. 3 matches to V$MZF1_01 (re: 3.84) were found.
In 0 seq. 0 matches to V$NF1_Q6 (re: 4.11) were found.
In 1 seq. 1 matches to V$NFAT_Q6 (re: 1.91) were found.
In 0 seq. 0 matches to V$NFE2_01 (re: 0.12) were found.
In 0 seq. 0 matches to V$NFKAPPAB50_01 (re: 0.05) were found.
In 0 seq. 0 matches to V$NFKAPPAB65_01 (re: 0.09) were found.
In 0 seq. 0 matches to V$NFKAPPAB_01 (re: 0.42) were found.
In 0 seq. 0 matches to V$NFKB_C (re: 0.05) were found.
In 0 seq. 0 matches to V$NFKB_Q6 (re: 0.28) were found.
In 0 seq. 0 matches to V$NFY_01 (re: 0.49) were found.
In 0 seq. 0 matches to V$NFY_C (re: < 0.01) were found.
In 1 seq. 1 matches to V$NFY_Q6 (re: 0.70) were found.
In 0 seq. 0 matches to V$NGFIC_01 (re: 0.03) were found.
In 1 seq. 1 matches to V$NKX25_01 (re: 0.79) were found.
In 1 seq. 1 matches to V$NKX25_02 (re: 0.51) were found.
In 0 seq. 0 matches to V$NMYC_01 (re: 1.64) were found.
In 0 seq. 0 matches to V$NRF2_01 (re: 0.16) were found.
In 0 seq. 0 matches to V$NRSF_01 (re: < 0.01) were found.
In 1 seq. 1 matches to V$OCT1_01 (re: 0.04) were found.
In 1 seq. 2 matches to V$OCT1_02 (re: 2.34) were found.
In 1 seq. 1 matches to V$OCT1_05 (re: 0.03) were found.
In 0 seq. 0 matches to V$OCT1_06 (re: 0.97) were found.
In 0 seq. 0 matches to V$OCT1_07 (re: 0.04) were found.
In 1 seq. 2 matches to V$OCT1_Q6 (re: 4.82) were found.
In 1 seq. 1 matches to V$OCT_C (re: 0.05) were found.
In 0 seq. 0 matches to V$OLF1_01 (re: 0.03) were found.
In 0 seq. 0 matches to V$P53_01 (re: < 0.01) were found.
In 0 seq. 0 matches to V$PADS_C (re: 0.52) were found.
In 0 seq. 0 matches to V$PAX5_01 (re: 0.04) were found.
In 0 seq. 0 matches to V$PAX5_02 (re: < 0.01) were found.
In 0 seq. 0 matches to V$PAX6_01 (re: 1.24) were found.
In 0 seq. 0 matches to V$PBX1_02 (re: 0.05) were found.
In 0 seq. 0 matches to V$POLY_C (re: 0.02) were found.
In 0 seq. 0 matches to V$PPARA_01 (re: < 0.01) were found.
In 0 seq. 0 matches to V$RFX1_01 (re: 0.94) were found.
In 0 seq. 0 matches to V$RFX1_02 (re: 0.95) were found.
In 0 seq. 0 matches to V$RORA1_01 (re: 0.19) were found.
In 0 seq. 0 matches to V$RORA2_01 (re: 0.01) were found.
In 0 seq. 0 matches to V$RREB1_01 (re: 0.03) were found.
In 0 seq. 0 matches to V$RSRFC4_01 (re: 0.02) were found.
In 0 seq. 0 matches to V$R_01 (re: 0.04) were found.
In 1 seq. 6 matches to V$S8_01 (re: 0.67) were found.
In 0 seq. 0 matches to V$SEF1_C (re: < 0.01) were found.
In 0 seq. 0 matches to V$SOX5_01 (re: 1.10) were found.
In 0 seq. 0 matches to V$SP1_Q6 (re: 1.70) were found.
In 0 seq. 0 matches to V$SREBP1_01 (re: 0.21) were found.
In 0 seq. 0 matches to V$SREBP1_02 (re: < 0.01) were found.
In 0 seq. 0 matches to V$SRF_01 (re: < 0.01) were found.
In 0 seq. 0 matches to V$SRF_C (re: 0.08) were found.
In 0 seq. 0 matches to V$SRF_Q6 (re: 0.16) were found.
In 0 seq. 0 matches to V$SRY_02 (re: 3.94) were found.
In 0 seq. 0 matches to V$STAF_01 (re: 0.02) were found.
In 0 seq. 0 matches to V$STAF_02 (re: 0.12) were found.
In 0 seq. 0 matches to V$STAT1_01 (re: < 0.01) were found.
In 0 seq. 0 matches to V$STAT3_01 (re: < 0.01) were found.
In 0 seq. 0 matches to V$STAT_01 (re: 0.48) were found.
In 0 seq. 0 matches to V$T3R_01 (re: 0.03) were found.
In 0 seq. 0 matches to V$TAL1ALPHAE47_01 (re: 0.14) were found.
In 0 seq. 0 matches to V$TAL1BETAE47_01 (re: 0.11) were found.
In 0 seq. 0 matches to V$TAL1BETAITF2_01 (re: 0.06) were found.
In 0 seq. 0 matches to V$TATA_01 (re: 5.33) were found.
In 0 seq. 0 matches to V$TATA_C (re: 0.30) were found.
In 0 seq. 0 matches to V$TAXCREB_01 (re: 0.06) were found.
In 0 seq. 0 matches to V$TAXCREB_02 (re: < 0.01) were found.
In 0 seq. 0 matches to V$TCF11MAFG_01 (re: 0.06) were found.
In 0 seq. 0 matches to V$TCF11_01 (re: 4.63) were found.
In 0 seq. 0 matches to V$TH1E47_01 (re: 1.95) were found.
In 1 seq. 1 matches to V$TST1_01 (re: 4.93) were found.
In 0 seq. 0 matches to V$USF_01 (re: 1.15) were found.
In 0 seq. 0 matches to V$USF_C (re: 2.19) were found.
In 0 seq. 0 matches to V$USF_Q6 (re: 2.52) were found.
In 0 seq. 0 matches to V$VBP_01 (re: 3.78) were found.
In 0 seq. 0 matches to V$VJUN_01 (re: < 0.01) were found.
In 0 seq. 0 matches to V$VMAF_01 (re: 0.99) were found.
In 1 seq. 1 matches to V$VMYB_01 (re: 2.29) were found.
In 1 seq. 1 matches to V$VMYB_02 (re: 1.04) were found.
In 0 seq. 0 matches to V$XBP1_01 (re: 0.34) were found.
In 0 seq. 0 matches to V$XFD1_01 (re: 0.07) were found.
In 0 seq. 0 matches to V$XFD2_01 (re: 0.07) were found.
In 0 seq. 0 matches to V$XFD3_01 (re: 0.04) were found.
In 0 seq. 0 matches to V$YY1_02 (re: 0.13) were found.
In 0 seq. 0 matches to V$ZID_01 (re: 0.33) were found.
Don't forget to cite:
Quandt, K. Frech, K. Karas, H. Wingender, E. and Werner, T.
MatInd and MatInspector - New fast and versatile tools for detection of
consensus matches in nucleotide sequence data
Nucleic Acids Research 23, 4878-4884 (1995)
Back to the MatInspector input form
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