CLUSTAL W (1.82) Multiple Sequence Alignments



Sequence format is Pearson
Sequence 1: gi|5689521|dbj|BAA83044.1|         1154 aa
Sequence 2: hg13_dna|GENSCAN_predicted_pep     1201 aa
Start of Pairwise alignments
Aligning...
Sequences (1:2) Aligned. Score:  88
Guide tree        file created:   [/ebi/extserv/old-work/87677.53411.dnd]
Start of Multiple Alignment
There are 1 groups
Aligning...
Group 1: Sequences:   2      Score:22263
Alignment Score 6288
CLUSTAL-Alignment file created  [/ebi/extserv/old-work/87677.53411.aln]

CLUSTAL W (1.82) multiple sequence alignment


gi|5689521|dbj|BAA83044.1|          PRAAARGGGGDAGTRGRGFVQAGRGAPMAECGRGGAAGGALPTSPGPALG 50
hg13_dna|GENSCAN_predicted_pep      --------------------------------------------------
                                                                                      

gi|5689521|dbj|BAA83044.1|          AKGALKAGVGEGGGGGGRLGHGRARYDSGGVSNGDCSLGVSGDEARASPT 100
hg13_dna|GENSCAN_predicted_pep      -----------------------------------------MEEARAEIG 9
                                                                              :****.  

gi|5689521|dbj|BAA83044.1|          RGPRGVALAPTPSAVVCTLPRESKPGGLPRRSSIIKDGTKQKRERKKTVS 150
hg13_dna|GENSCAN_predicted_pep      E-----------SELECP-----------------KDGTKQKRERKKTVS 31
                                    .           * : *.                 ***************

gi|5689521|dbj|BAA83044.1|          FSSMPTEKKISSASDCINSMVEGSELKKVRSNSRIYHRYFLLDADMQSLR 200
hg13_dna|GENSCAN_predicted_pep      FSSMPTEKKISSASDCINSMVEGSELKKVRSNSRIYHRYFLLDADMQSLR 81
                                    **************************************************

gi|5689521|dbj|BAA83044.1|          WEPSKKDSEKAKIDIKSIKEVRTGKNTDIFRSNGISDQISEDCAFSVIYG 250
hg13_dna|GENSCAN_predicted_pep      WEPSKKDSEKAKIDIKSIKEVRTGKNTDIFRSNGISDQISEDCAFSVIYG 131
                                    **************************************************

gi|5689521|dbj|BAA83044.1|          ENYESLDLVANSADVANIWVTGLRYLISYGKHTLDMLESSQDNMRTSWVS 300
hg13_dna|GENSCAN_predicted_pep      ENYESLDLVANSADVANIWVTGLRYLISYGKHTLDMLESSQDNMRTSWVS 181
                                    **************************************************

gi|5689521|dbj|BAA83044.1|          QMFSEIDVDNLGHITLCNAVQCIRNLNPGLKTSKIELKFKELHKSKDKAG 350
hg13_dna|GENSCAN_predicted_pep      QMFSEIDVDNLGHITLCNAVQCIRNLNPGLKTSKIELKFKELHKSKDKAG 231
                                    **************************************************

gi|5689521|dbj|BAA83044.1|          TEVTKEEFIEVFHELCTRPEIYFLLVQFSSNKEFLDTKDLMMFLEAEQGV 400
hg13_dna|GENSCAN_predicted_pep      TEVTKEEFIEVFHELCTRPEIYFLLVQFSSNKEFLDTKDLMMFLEAEQGV 281
                                    **************************************************

gi|5689521|dbj|BAA83044.1|          AHINEEISLEIIHKYEPSKEGQEKGWLSIDGFTNYLMSPDCYIFDPEHKK 450
hg13_dna|GENSCAN_predicted_pep      AHINEEISLEIIHKYEPSKEGQEKGWLSIDGFTNYLMSPDCYIFDPEHKK 331
                                    **************************************************

gi|5689521|dbj|BAA83044.1|          VCQDMKQPLSHYFINSSHNTYLIEDQFRGPSDITGYIRALKMGCRSVELD 500
hg13_dna|GENSCAN_predicted_pep      VCQDMKQPLSHYFINSSHNTYLIEDQFRGPSDITGYIRALKMGCRSVELD 381
                                    **************************************************

gi|5689521|dbj|BAA83044.1|          VWDGPDNEPVIYTGHTMTSQIVFRSVIDIINKYAFFASEYPLILCLENHC 550
hg13_dna|GENSCAN_predicted_pep      VWDGPDNEPVIYTGHTMTSQIVFRSVIDIINKYAFFASEYPLILCLENHC 431
                                    **************************************************

gi|5689521|dbj|BAA83044.1|          SIKQQKVMVQHMKKLLGDKLYTTSPNVEESYLPSPDVLKGKILIKAKKLS 600
hg13_dna|GENSCAN_predicted_pep      SIKQQKVMVQHMKKLLGDKLYTTSPNVEESYLPSPDVLKGKILIKAKKLS 481
                                    **************************************************

gi|5689521|dbj|BAA83044.1|          SNCSGVEGDVTDEDEGAEMSQRMGKENMEQPNNVPVKRFQLCKELSELVS 650
hg13_dna|GENSCAN_predicted_pep      SNCSGVEGDVTDEDEGAEMSQRMGKENMEQPNNVPVKRFQLCKELSELVS 531
                                    **************************************************

gi|5689521|dbj|BAA83044.1|          ICKSVQFKEFQVSFQVQKYWEVCSFNEVLASKYANENPGDFVNYNKRFLA 700
hg13_dna|GENSCAN_predicted_pep      ICKSVQFKEFQVSFQVQKYWEVCSFNEVLASKYANENPGDFVNYNKRFLA 581
                                    **************************************************

gi|5689521|dbj|BAA83044.1|          RVFPSPMRIDSSNMNPQDFWKCGCQIVAMNFQTPGLMMDLNIGWFRQNGN 750
hg13_dna|GENSCAN_predicted_pep      RVFPSPMRIDSSNMNPQDFWKCGCQIVAMNFQTPGLMMDLNIGWFRQNGN 631
                                    **************************************************

gi|5689521|dbj|BAA83044.1|          CGYVLRPAIMREEVSFFSANTKDSVPGVSPQLLHIKIISGQNFPKPKGSG 800
hg13_dna|GENSCAN_predicted_pep      CGYVLRPAIMREEVSFFSANTKDSVPGVSPQLLHIKIISGQNFPKPKGSG 681
                                    **************************************************

gi|5689521|dbj|BAA83044.1|          AKGDVVDPYVYVEIHGIPADCAEQRTKTVHQNGDAPIFDESFEFQINLPE 850
hg13_dna|GENSCAN_predicted_pep      AKGDVVDPYVYVEIHGIPADCAEQRTKTVHQNGDAPIFDESFEFQINLPE 731
                                    **************************************************

gi|5689521|dbj|BAA83044.1|          LAMVRFVVLDDDYIGDEFIGQYTIPFECLQTGYRHVPLQSLTGEVLAHAS 900
hg13_dna|GENSCAN_predicted_pep      LAMVRFVVLDDDYIGDEFIGQYTIPFECLQTGYRHVPLQSLTGEVLAHAS 781
                                    **************************************************

gi|5689521|dbj|BAA83044.1|          LFVHVAITNRRGGGKPHKRGLSVRKGKKSREYASLRTLWIKTVDEVFKNA 950
hg13_dna|GENSCAN_predicted_pep      LFVHVAITNRRGGGKPHKRGLSVRKGKKSREYASLRTLWIKTVDEVFKNA 831
                                    **************************************************

gi|5689521|dbj|BAA83044.1|          QPPIRDATDLRENMQNAVVSFKELCGLSSVANLMQCMLAVSPRFLGPDNT 1000
hg13_dna|GENSCAN_predicted_pep      QPPIRDATDLRENMQNAVVSFKELCGLSSVANLMQCMLAVSPRFLGPDNT 881
                                    **************************************************

gi|5689521|dbj|BAA83044.1|          PLVVLNLSEQYPTMELQGIVPEVLKKIVTTYDM----------------- 1033
hg13_dna|GENSCAN_predicted_pep      PLVVLNLSEQYPTMELQGIVPEVLKKIVTTYDMQLKDFSDFVTSLETATT 931
                                    *********************************                 

gi|5689521|dbj|BAA83044.1|          -------------------MIQSLKALIENADAVYEKIVHCQKA------ 1058
hg13_dna|GENSCAN_predicted_pep      EDAVATSVLSRTGKESSLEMIQSLKALIENADAVYEKIVHCQKAGTCYAD 981
                                                       *************************      

gi|5689521|dbj|BAA83044.1|          --------------------------------------------------
hg13_dna|GENSCAN_predicted_pep      VSTGKRKRGRRGMLRSEDLQPSVCEVPGKLPCDSLGCVSFVLALALACHR 1031
                                                                                      

gi|5689521|dbj|BAA83044.1|          ------AMEFHEHLHSIGTKEGLKERKLQKAVESFTWNITILK------- 1095
hg13_dna|GENSCAN_predicted_pep      ETVKSQAMEFHEHLHSIGTKEGLKERKLQKAVESFTWNITILKKHLFGSS 1081
                                          *************************************       

gi|5689521|dbj|BAA83044.1|          --------------------------------------------------
hg13_dna|GENSCAN_predicted_pep      KNQGQELCLEGSPFRSCTEPFIPLWQLLCTLWGGGQGGGKAVFLLWGDKL 1131
                                                                                      

gi|5689521|dbj|BAA83044.1|          -----------GQADLLKYAKNETLENLKQIHFAAVSCGLNKPGTENADV 1134
hg13_dna|GENSCAN_predicted_pep      ICSSCSMPIKRGQADLLKYAKNETLENLKQIHFAAVSCGLNKPGTENADV 1181
                                               ***************************************

gi|5689521|dbj|BAA83044.1|          QKPRRSLEVIPEKANDETGE 1154
hg13_dna|GENSCAN_predicted_pep      QKPRRSLEVIPEKANDETGE 1201
                                    ********************

(gi|5689521|dbj|BAA83044.1|:0.05849,hg13_dna|GENSCAN_predicted_pep:0.05849);