MatInspector Result
MatInspector Release public domain      January 2000           Fri Mar 14 10:04:26 2003


   Solution parameters:
   ~~~~~~~~~~~~~~~~~~~~
   sequence file:   regiopromotora.seq
   core sim:        0.75
   matrix sim:      0.85

   Explanation for column output:
   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
        ->      Matrix positions correspond to sense strand numbering, but all
                sequences are given in 5'-3' direction.

        ->      n/a in column 'core simil.' indicates, that no core search
                was conducted.

        ->      Capital letters within the sequence indicate the core string.

 Matrix               | Position(str)| Core   | Matrix | Sequence
 Name                 |   of Matrix  | Simil. | Simil. | 
-----------------------------------------------------------------------

Inspecting sequence regiopromotora [?] (1 - 200):
  V$CETS1P54_01       |        9 (-) |  0.852 |  0.929 | ccTGGAagtt
  V$E47_02            |       10 (+) |  1.000 |  0.892 | acttcCAGGtggaaca
  V$LMO2COM_01        |       12 (+) |  1.000 |  0.950 | ttcCAGGtggaa
  V$DELTAEF1_01       |       13 (-) |  1.000 |  0.970 | ttccACCTgga
  V$MYOD_Q6           |       13 (-) |  1.000 |  0.915 | tcCACCtgga
  V$USF_C             |       14 (-) |  0.856 |  0.924 | cCACCTgg
  V$RFX1_02           |       16 (+) |  1.000 |  0.880 | aggtggaacaaGCAAccc
  V$CEBPB_01          |       37 (+) |  1.000 |  0.896 | ttctgctGCAAgct
  V$AP4_Q5            |       37 (-) |  1.000 |  0.887 | tgCAGCagaa
  V$IK2_01            |       63 (+) |  1.000 |  0.908 | gagcGGGAgaaa
  V$ER_Q6             |       77 (+) |  1.000 |  0.898 | taacttgaacaTGACctgt
  V$NKX25_01          |       78 (-) |  1.000 |  0.880 | tcAAGTt
  V$TCF11_01          |       79 (-) |  1.000 |  0.979 | GTCAtgttcaagt
  V$CMYB_01           |       84 (+) |  1.000 |  0.880 | aacatgacctGTTGcatt
  V$AP1FJ_Q2          |       86 (+) |  1.000 |  0.876 | caTGACctgtt
  V$RORA1_01          |       87 (-) |  1.000 |  0.913 | tgcaacaGGTCat
  V$VMYB_02           |       91 (-) |  0.784 |  0.852 | tgcAACAgg
  V$CEBP_C            |       96 (+) |  0.992 |  0.893 | tgcatttgGCAAGttcta
  V$CEBPB_01          |       97 (+) |  1.000 |  0.956 | gcatttgGCAAgtt
  V$NF1_Q6            |       99 (+) |  1.000 |  0.921 | attTGGCaagttctagca
  V$CEBPB_01          |      107 (+) |  1.000 |  0.869 | agttctaGCAAcat
  V$GATA1_02          |      130 (+) |  1.000 |  0.940 | gaagcGATAcaggc
  V$GATA1_03          |      130 (+) |  1.000 |  0.897 | gaagcGATAcaggc
  V$GATA1_04          |      131 (+) |  1.000 |  0.883 | aagcGATAcaggc
  V$LMO2COM_02        |      133 (+) |  1.000 |  0.949 | gcGATAcag
  V$GATA_C            |      134 (+) |  0.875 |  0.893 | cGATACaggca
  V$VMYB_01           |      159 (-) |  0.876 |  0.870 | aggAACTgga
  V$RFX1_02           |      161 (-) |  0.882 |  0.890 | gagcagcaggaGGAActg
  V$CETS1P54_01       |      164 (-) |  0.926 |  0.879 | gcAGGAggaa
  V$AP4_Q6            |      168 (-) |  1.000 |  0.859 | agCAGCagga
  V$AP4_Q5            |      168 (-) |  1.000 |  0.916 | agCAGCagga
  V$IK2_01            |      183 (+) |  1.000 |  0.929 | tgctGGGAtgcg
  V$CETS1P54_01       |      191 (-) |  0.926 |  0.920 | tcAGGAcgca

 A total of 200 basepairs was scanned.