PERL COMMANDS FOR RUNNING PATSCAN WITH FERROPORTIN PATTERN

 

- Running ferroportin pattern on the ferroportin set of sequences:
                    $scan_for_matches ferroportinpattern.txt < aconitase.fa

- Running ferroportin pattern on the non ires 5' sequences:
                $scan_for_matches ferroportinpattern.txt < no_ires_5'.fa

- Running ferroportin pattern on the non ires 5' sequences:
                $scan_for_matches ferroportinpattern.txt < no_ires_3'.fa